Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold679
Parameters: 2 7 7 80 10 50 1000
Length:  81274

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1142--1237
20
4.7
20
76
14
88
36
12
16
34
1.87
2372--2594
95
2.4
94
73
17
201
45
3
6
45
1.44
2424--2631
95
2.2
96
80
8
219
43
2
5
48
1.40
3022--3069
21
2.2
21
82
10
53
29
10
10
50
1.70
3723--3763
21
2.0
21
85
9
57
39
4
9
46
1.58
5891--5931
21
2.0
21
90
0
64
9
17
0
73
1.09
5917--6009
16
5.8
16
74
18
70
2
20
0
77
0.87
5917--6147
74
3.4
65
74
19
193
3
22
0
73
1.00
5917--6014
18
5.3
18
71
17
67
2
20
0
77
0.87
5983--6020
18
2.1
18
90
0
58
2
23
0
73
0.95
5929--6094
74
2.3
74
81
13
202
3
24
0
71
1.02
6033--6147
32
3.5
32
76
17
103
1
22
0
74
0.96
6102--6141
15
2.7
15
84
11
55
2
17
0
80
0.83
6107--6148
21
1.9
22
90
9
68
4
16
0
78
0.91
7868--7894
2
13.5
2
100
0
54
48
0
0
51
1.00
7833--7880
22
2.2
22
84
0
60
33
4
4
58
1.36
9236--9277
21
2.0
22
95
4
77
47
7
4
40
1.52
9410--9460
21
2.4
21
87
6
68
45
5
7
41
1.57
10419--10619
55
3.6
55
78
11
205
38
8
4
47
1.57
10393--10599
110
1.9
109
81
8
251
37
9
5
48
1.58
10380--11024
28
23.0
28
69
7
256
37
9
6
47
1.60
10729--10781
27
1.9
28
84
3
72
39
7
3
49
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10900--10981
29
2.9
29
83
7
107
40
8
4
46
1.56
10843--11024
83
2.2
82
83
3
213
37
8
7
46
1.62
11477--11520
6
7.0
6
80
10
52
81
0
18
0
0.68
12857--13002
39
3.7
39
73
3
123
36
9
7
45
1.65
12818--12991
78
2.2
78
83
6
208
34
9
8
47
1.67
16257--16281
2
12.5
2
100
0
50
48
0
0
52
1.00
16284--16418
72
1.9
69
80
13
157
44
5
1
48
1.34
21723--21763
17
2.6
16
88
7
57
26
4
0
68
1.10
23032--23065
2
17.0
2
93
0
59
50
2
0
47
1.16
25938--26005
15
4.5
15
71
14
59
66
2
2
27
1.21
30369--30759
28
13.6
28
80
4
379
25
14
27
31
1.95
30767--30855
14
6.6
14
69
10
51
37
17
11
33
1.86
46671--46798
52
2.5
52
94
3
224
30
17
17
33
1.94
46807--46831
13
1.9
13
100
0
50
36
16
16
32
1.90
46872--46938
33
2.0
33
88
0
98
40
13
11
34
1.81
46894--46918
13
1.9
13
100
0
50
32
16
16
36
1.90
47707--47739
2
16.5
2
100
0
66
48
0
0
51
1.00
50691--50825
70
1.9
69
92
1
225
45
6
9
38
1.63
54347--54393
18
2.6
18
80
12
60
61
0
0
38
0.96
54348--54392
17
2.5
18
85
7
56
62
0
0
37
0.96
54343--54413
21
3.4
22
69
23
62
59
0
1
39
1.06
54614--54649
17
2.1
17
100
0
72
41
16
11
30
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54756--54819
11
5.8
11
71
12
51
34
1
0
64
1.03
54760--54830
23
3.2
23
76
19
71
38
1
0
60
1.06
54852--54888
20
1.9
20
88
5
58
54
2
2
40
1.29
61398--61438
20
2.0
20
100
0
82
29
9
4
56
1.53
61654--61692
19
2.1
19
95
0
69
48
0
28
23
1.51
61806--61908
54
1.9
54
88
4
154
42
12
16
28
1.84
66995--67056
20
3.1
19
77
13
63
58
1
1
38
1.18
67005--67061
20
2.9
21
76
10
66
61
1
0
36
1.07
69717--69796
1
80.0
1
96
0
133
96
0
1
2
0.27
69801--69857
21
2.7
21
97
0
105
33
10
19
36
1.86
69913--69980
19
3.9
19
78
21
85
35
11
14
38
1.83
69934--69958
13
1.9
13
100
0
50
36
16
16
32
1.90
69915--69977
32
2.0
32
96
0
117
34
12
15
36
1.86
70020--70045
13
2.0
13
100
0
52
30
15
15
38
1.88
70000--70066
33
2.0
33
88
0
98
25
14
16
43
1.86
72524--72596
27
2.7
27
87
6
94
23
34
21
20
1.97
72579--72749
51
3.3
51
79
4
198
29
26
11
32
1.92
72732--72813
28
2.9
28
80
7
87
25
31
15
26
1.96

Tables:   1

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