Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold680
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1139231
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.15
Warning! 618122 characters in sequence are not A, C, G, or T
File 3 of 4
Found at i:857775 original size:55 final size:56
Alignment explanation
Indices: 857699--858061 Score: 500
Period size: 55 Copynumber: 6.3 Consensus size: 56
857689 GGAGAAAGCA
* * *
857699 TCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTAGCCTTTGAAAGGCG
1 TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
857754 TCCTACTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* *
857815 TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAATTTGTGTGGGCTTTAAAAGGCG
1 TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
857871 TCCTGCTCTTTAAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
857926 TCCTACTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* *
857987 TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAATTTGTGTGGGCTTTAAAAGGCG
1 TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
858043 TCCTGCTCTTTGAGGACTA
1 TCCTACTCTTTGAGGACTA
858062 ATGGGCGAAA
Statistics
Matches: 279, Mismatches: 14, Indels: 29
0.87 0.04 0.09
Matches are distributed among these distances:
55 118 0.42
56 53 0.19
60 2 0.01
61 62 0.22
62 44 0.16
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (56 bp):
TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:857928 original size:172 final size:172
Alignment explanation
Indices: 857508--858266 Score: 830
Period size: 172 Copynumber: 4.5 Consensus size: 172
857498 GGAGAAAAGG
* * *
857508 AAAAGACGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAGAGAAAA
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AG----
* * * * ** * * *
857573 TGCGACCTGCTCTTCGAGGACTGGAAGGTGCCACCAACTTATGTGGGCTTTGCAAAGGGAAA-GC
61 -GCGTCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGC
* * * * * * * *
857637 ATCCTGCTCTTTGAGGACT-GGAAGGTTCCACCAACTCGAGTGGTCTTT
124 GTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * *
857685 AAAAGGAGAAAGCATCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTAGCCTTTGAA
1 -AAA--AG---GCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAA
857749 AGGCGTCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
59 AGGCGTCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
*
857814 GTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAATTTGTGTGGGCTTT
124 GTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
*
857863 AAAAGGCGTCCTGCTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
857928 CTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTAC
66 CTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTAC
*
857993 TCTTTGAGGACTAGAAAAGTGCCACCAATTTGTGTGGGCTTT
131 TCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * * * *
858035 AAAAGGCGTCCTGCTCTTTGAGGACT--AATGGGCGA--AA--------AG---AGAGA-GCATC
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
* * * * * *
858084 CTACTTTTTGAGGACTAGGAAGTGCCACCAAC-----TGGGCTTTAAAAGGAGAAGGAGTCCTGC
66 CTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTAC
* *
858144 TCTTTGAGGACTGGGAAA-TGCCACCAACTTGTGTGGGCTTT
131 TCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
*
858185 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGAGCTTTGAAAGGCGTC
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
*
858250 CTATTCTTTGAGGACTA
66 CTACTCTTTGAGGACTA
858267 AAGGGTGAAA
Statistics
Matches: 503, Mismatches: 53, Indels: 62
0.81 0.09 0.10
Matches are distributed among these distances:
150 48 0.10
151 41 0.08
152 6 0.01
154 2 0.00
156 33 0.07
157 3 0.01
160 1 0.00
162 2 0.00
165 3 0.01
166 19 0.04
168 2 0.00
170 6 0.01
171 5 0.01
172 182 0.36
175 2 0.00
176 8 0.02
177 65 0.13
178 25 0.05
180 2 0.00
182 2 0.00
183 42 0.08
184 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (172 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
CTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTAC
TCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:858041 original size:117 final size:117
Alignment explanation
Indices: 857503--858061 Score: 576
Period size: 117 Copynumber: 4.8 Consensus size: 117
857493 ATAAAGGAGA
* *
857503 AAAGGAAAAGACGTCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAACTCGTGTGGGCTTTGAAG
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT----
* * * * ** *
857567 AGAAAATGCGACCTGCTCTTCGAGGACTGGAAGGTGCCACCAACTTATGTGGGCTTT
62 A-AAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
* * * * * * * *
857624 GCAAAGGGAAA-GCATCCTGCTCTTTGAGGACT-GGAAGGTTCCACCAACTCGAGTGGTCTTTAA
1 --AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAA
* * *
857687 AAGGAGAAAGCATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTAGCCTTT
64 AA--AG---GCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
*
857746 ----G-AAAGGCGTCCTACTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT---A
* *
857805 GGAAAAGGCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAATTTGTGTGGGCTTT
63 --AAAAGGCGTCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
* *
857863 -----AAAAGGCGTCCTGCTCTTTAAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT-GAA
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
*
857921 AGGCGTCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
66 AGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
* *
857973 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAATTTGTGTGGGCTTT-AA
1 -AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAA
858037 AAGGCGTCCTGCTCTTTGAGGACTA
65 AAGGCGTCCTGCTCTTTGAGGACTA
858062 ATGGGCGAAA
Statistics
Matches: 373, Mismatches: 40, Indels: 52
0.80 0.09 0.11
Matches are distributed among these distances:
110 22 0.06
111 31 0.08
115 3 0.01
116 93 0.25
117 125 0.34
118 1 0.00
119 4 0.01
121 3 0.01
122 83 0.22
123 8 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (117 bp):
AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
AGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:858203 original size:150 final size:152
Alignment explanation
Indices: 857926--858210 Score: 439
Period size: 150 Copynumber: 1.9 Consensus size: 152
857916 TTGAAAGGCG
*
857926 TCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
1 TCCTACTCTTTGAGGACTAGAAAATGCCACCAAC---T-TGGGCTTTAAAAGGAAAAGGAGTCCT
*
857991 ACTCTTTGAGGACTAGAAAAGTGCCACCAATTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGA
62 ACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGA
858056 GGACTAATGGGCGAAAAGAGAGAGCA
127 GGACTAATGGGCGAAAAGAGAGAGCA
* * * * *
858082 TCCTACTTTTTGAGGACTAGGAAGTGCCACCAAC-TGGGCTTTAAAAGGAGAAGGAGTCCTGCTC
1 TCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTGGGCTTTAAAAGGAAAAGGAGTCCTACTC
* *
858146 TTTGAGGACTGGGAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGAC
66 TTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGAC
858210 T
131 T
858211 GAAAAGTGCC
Statistics
Matches: 120, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
150 48 0.40
151 41 0.34
156 31 0.26
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (152 bp):
TCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTGGGCTTTAAAAGGAAAAGGAGTCCTACTC
TTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGAC
TAATGGGCGAAAAGAGAGAGCA
Found at i:858211 original size:55 final size:55
Alignment explanation
Indices: 858132--858265 Score: 198
Period size: 55 Copynumber: 2.4 Consensus size: 55
858122 TTAAAAGGAG
* * *
858132 AAGGAGTCCTGCTCTTTGAGGACTGGGAAA-TGCCACCAACTTGTGTGGGCTTTAA
1 AAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGAGCTTTAA
*
858187 AAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGAGCTTTGA
1 AAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGAGCTTTAA
**
858242 AAGGCGTCCTATTCTTTGAGGACT
1 AAGGCGTCCTGCTCTTTGAGGACT
858266 AAAGGGTGAA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
54 4 0.06
55 68 0.94
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (55 bp):
AAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGAGCTTTAA
Found at i:859368 original size:9 final size:9
Alignment explanation
Indices: 859355--859436 Score: 103
Period size: 9 Copynumber: 8.8 Consensus size: 9
859345 TTTTCTCTCT
859355 TTTTTCTTTG
1 TTTTT-TTTG
*
859365 TTTTGTTTTT
1 TTTT-TTTTG
859375 TATTTTTTTG
1 T-TTTTTTTG
859385 -TTTTTTTG
1 TTTTTTTTG
859393 TTTTTTTTG
1 TTTTTTTTG
859402 TTTTTTTTG
1 TTTTTTTTG
859411 TTTTTTTTG
1 TTTTTTTTG
*
859420 TTATTTTTTC
1 TT-TTTTTTG
859430 TTTTTTT
1 TTTTTTT
859437 GAAAAGAATG
Statistics
Matches: 65, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
8 8 0.12
9 33 0.51
10 20 0.31
11 4 0.06
ACGTcount: A:0.02, C:0.02, G:0.09, T:0.87
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:859374 original size:1 final size:1
Alignment explanation
Indices: 859354--859436 Score: 67
Period size: 1 Copynumber: 83.0 Consensus size: 1
859344 CTTTTCTCTC
* * * * * * * *
859354 TTTTTTCTTTGTTTTGTTTTTTATTTTTTTGTTTTTTTGTTTTTTTTGTTTTTTTTGTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
859419 GTTATTTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTT
859437 GAAAAGAATG
Statistics
Matches: 60, Mismatches: 22, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.02, C:0.02, G:0.08, T:0.87
Consensus pattern (1 bp):
T
Found at i:871814 original size:51 final size:50
Alignment explanation
Indices: 871742--871912 Score: 191
Period size: 51 Copynumber: 3.4 Consensus size: 50
871732 TCGAAAATAA
* * * **
871742 CGGGGTTGGAGTATCCTCGATTGTGGAAAATCGATGCTTGAGAAATAAGGT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATAG-TGTTTGAGAAATAAAAT
*
871793 CGGGGTTGGAGTATCCCCGATTGTGAGAAATTAGTGTTTTG-GAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTG-GAAAATAGTG-TTTGAGAAATAAAAT
* * * * *
871844 CGGAGTTAGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAA-TAGTGTTTGAGAAATAAAAT
*
871895 CGGGATTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
871913 TCAAAAATAA
Statistics
Matches: 101, Mismatches: 15, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
50 7 0.07
51 85 0.84
52 9 0.09
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (50 bp):
CGGGGTTGGAGTATCCCCGATTGTGGAAAATAGTGTTTGAGAAATAAAAT
Found at i:872100 original size:51 final size:51
Alignment explanation
Indices: 872040--872215 Score: 180
Period size: 51 Copynumber: 3.5 Consensus size: 51
872030 AACGGGGTTA
* *
872040 GAGTATCCCCAATTATGAAAAATTGGTGTTTTGGAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATCGGAGTTG
* ** * *
872091 GAGTATCCCCGA-T-TGCAGTAAATCAATGCTTTAGAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATG-A-AAAATTGATGTTTTGGAAATAAAATCGGAGTTG
* * * *
872142 GAGTATCCCCGATTAAGAAAAATTGATGTTTTGGACATGAAACCAGGA-TTG
1 GAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATC-GGAGTTG
* *
872193 GAGTATCTCCGA-GATGAAAAATT
1 GAGTATCCCCGATTATGAAAAATT
872216 TAGAAATTTA
Statistics
Matches: 101, Mismatches: 19, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
49 2 0.02
50 11 0.11
51 82 0.81
52 5 0.05
53 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (51 bp):
GAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATCGGAGTTG
Found at i:874572 original size:13 final size:13
Alignment explanation
Indices: 874554--874581 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
874544 GTAAATCCAG
874554 AATGTATCGATAC
1 AATGTATCGATAC
874567 AATGTATCGATAC
1 AATGTATCGATAC
874580 AA
1 AA
874582 CAAGCAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:874591 original size:20 final size:20
Alignment explanation
Indices: 874565--874620 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
874555 ATGTATCGAT
874565 ACAATGTATCGATACAA-CA
1 ACAATGTATCGATACAAGCA
* *
874584 AGCAATGTGTCGATGCAATGCA
1 A-CAATGTATCGATACAA-GCA
874606 A-AATGTATCGATACA
1 ACAATGTATCGATACA
874621 TCTAGGTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
19 1 0.03
20 26 0.87
22 3 0.10
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAATGTATCGATACAAGCA
Found at i:874642 original size:82 final size:82
Alignment explanation
Indices: 874505--874683 Score: 261
Period size: 82 Copynumber: 2.2 Consensus size: 82
874495 AAAATGCCTG
* * * * *
874505 AATGTATCGATACATTGTAAAATGTATCGATGCATCTGGGTAAATCCAGAATGTATCGATACAAT
1 AATGTATCGATACAATGCAAAATGTATCGATACATCTAGGTAAACCCAGAATGTATCGATACAAT
874570 GTATCGATACAACAAGC
66 GTATCGATACAACAAGC
* *
874587 AATGTGTCGATGCAATGCAAAATGTATCGATACATCTAGGTAAACCCAGAATGTATCGATACAAT
1 AATGTATCGATACAATGCAAAATGTATCGATACATCTAGGTAAACCCAGAATGTATCGATACAAT
*
874652 GTATCGATACAATGAA-C
66 GTATCGATACAA-CAAGC
*
874669 AATGTATTGATACAA
1 AATGTATCGATACAA
874684 ATTGTGAAAA
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
82 83 0.98
83 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (82 bp):
AATGTATCGATACAATGCAAAATGTATCGATACATCTAGGTAAACCCAGAATGTATCGATACAAT
GTATCGATACAACAAGC
Found at i:874683 original size:13 final size:13
Alignment explanation
Indices: 874636--874665 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
874626 GTAAACCCAG
874636 AATGTATCGATAC
1 AATGTATCGATAC
874649 AATGTATCGATAC
1 AATGTATCGATAC
874662 AATG
1 AATG
874666 AACAATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:878263 original size:21 final size:21
Alignment explanation
Indices: 878239--878291 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
878229 TTCTACAATT
878239 TGTATCGATACAATTAG-TGAA
1 TGTATCGATACAA-TAGATGAA
878260 TGTATCGATAC-ATAGATGAA
1 TGTATCGATACAATAGATGAA
*
878280 TGTATTGATACA
1 TGTATCGATACA
878292 TGCCTAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 3 0.10
20 15 0.52
21 11 0.38
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (21 bp):
TGTATCGATACAATAGATGAA
Found at i:883097 original size:20 final size:20
Alignment explanation
Indices: 883074--883127 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
883064 GTTACAAGCA
* *
883074 ATGTATAGATACAAT-TCGTT
1 ATGTATCGATACAATGTC-CT
883094 ATGTATCGATACAATGTCCT
1 ATGTATCGATACAATGTCCT
883114 ATGTATCGATACAA
1 ATGTATCGATACAA
883128 ACAGTGGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 29 0.94
21 2 0.06
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATGTCCT
Found at i:883850 original size:25 final size:25
Alignment explanation
Indices: 883771--883856 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 25
883761 AATGCTTAAA
* *
883771 AAAATTTCTCCCCCTTAATAGGTTAAAAA
1 AAAA-TTCTCCCCCTTAAT---TCAAAAC
**
883800 AAAATTTCTCCCCCTTAATTTGAAAC
1 AAAA-TTCTCCCCCTTAATTCAAAAC
883826 AATAATTCTCCCCCTTAA-TCAAAAC
1 AA-AATTCTCCCCCTTAATTCAAAAC
883851 AAAATT
1 AAAATT
883857 TATTTTATTT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.08
25 7 0.13
26 20 0.38
27 2 0.04
29 19 0.37
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.31
Consensus pattern (25 bp):
AAAATTCTCCCCCTTAATTCAAAAC
Found at i:884288 original size:20 final size:20
Alignment explanation
Indices: 884263--884349 Score: 73
Period size: 20 Copynumber: 4.7 Consensus size: 20
884253 TTTACCCAGA
*
884263 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTTACAT
*
884283 TGTATCCATACA---T---T
1 TGTATCGATACATTTTACAT
*
884297 -GTATCGATACATTGCT-CAT
1 TGTATCGATACATT-TTACAT
*
884316 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTTACAT
884336 TGTATCGATACATT
1 TGTATCGATACATT
884350 CAAGCATTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 16
0.73 0.05 0.21
Matches are distributed among these distances:
13 10 0.18
14 1 0.02
17 2 0.04
19 2 0.04
20 40 0.73
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTTTACAT
Found at i:884305 original size:33 final size:33
Alignment explanation
Indices: 884263--884329 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
884253 TTTACCCAGA
*
884263 TGTATCGATACATT-TTGCATTGTATCCATACAT
1 TGTATCGATACATTGCT-CATTGTATCCATACAT
*
884296 TGTATCGATACATTGCTCATTGTATCGATACAT
1 TGTATCGATACATTGCTCATTGTATCCATACAT
884329 T
1 T
884330 TTACAATGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTGCTCATTGTATCCATACAT
Found at i:884329 original size:13 final size:13
Alignment explanation
Indices: 884280--884310 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
884270 ATACATTTTG
884280 CATTGTATCCATA
1 CATTGTATCCATA
*
884293 CATTGTATCGATA
1 CATTGTATCCATA
884306 CATTG
1 CATTG
884311 CTCATTGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (13 bp):
CATTGTATCCATA
Found at i:886806 original size:51 final size:51
Alignment explanation
Indices: 886647--886814 Score: 169
Period size: 51 Copynumber: 3.3 Consensus size: 51
886637 ATTTTTCATC
* * * **
886647 TCGGGGATACTCCAA-TCCCAGTTTCATTTC-CAAACATCAATTTTTCTTAA
1 TCGGGGATACTCCAACTCCGA-TTTTATTTCTAAAACATCAATTTTTCACAA
* * * ** *
886697 TCGGGGATACTCCAACTCCGATTTTATTTCTAAAGCGTCGATTTGCCGCAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCTAAAACATCAATTTTTCACAA
* * * *
886748 TCAGGGATACTCCAACTTCGATTTTATTTTTAAAACACCAATTTTTCACAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCTAAAACATCAATTTTTCACAA
*
886799 TTGGGGATACTCCAAC
1 TCGGGGATACTCCAAC
886815 CCTATTATTT
Statistics
Matches: 94, Mismatches: 22, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
50 23 0.24
51 71 0.76
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (51 bp):
TCGGGGATACTCCAACTCCGATTTTATTTCTAAAACATCAATTTTTCACAA
Found at i:886946 original size:28 final size:28
Alignment explanation
Indices: 886883--886955 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
886873 TTTCATAATC
* **
886883 GGGGGTACTCCAACCCCGTTATTTCATC
1 GGGGATACTCCAACCCCGTTATTTCAGA
* * *
886911 GGGAATACTCCAATCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTATTTCAGA
*
886939 GGGGATACTCCAGCCCC
1 GGGGATACTCCAACCCC
886956 AATTTTATTT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.21, C:0.33, G:0.22, T:0.25
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCAGA
Found at i:887012 original size:51 final size:51
Alignment explanation
Indices: 886939--887057 Score: 150
Period size: 51 Copynumber: 2.3 Consensus size: 51
886929 TTATTTCCGA
* * *
886939 GGGGATACTCCAGCCCCAATTTTATTTCTAAAATACCAA-TTCTCCACAATC
1 GGGGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTTCT-CACAATC
* * * *
886990 GGGGATACTTCAACTCCGATTTTATTTCCAAAACACCAATTTCTCATAATC
1 GGGGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTTCTCACAATC
*
887041 GGGGATACTCTAACCCC
1 GGGGATACTCCAACCCC
887058 GTTATCTTTG
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
51 53 0.93
52 4 0.07
ACGTcount: A:0.30, C:0.29, G:0.12, T:0.29
Consensus pattern (51 bp):
GGGGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTTCTCACAATC
Found at i:887073 original size:79 final size:78
Alignment explanation
Indices: 886990--887290 Score: 250
Period size: 79 Copynumber: 3.8 Consensus size: 78
886980 CTCCACAATC
* * * *
886990 GGGGATACTTCAACTCCGATTTTATTTCCAAAACACCAATTTCT-CATAATCGGGGATACTCTAA
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGATTT-TACATAATCAGGGATACTCCAA
*
887054 CCCCGTTATCTTTGA
65 CCCCATTAT-TTTGA
* * * ** *
887069 GGGGATACTCCAA-TCCCGACTTTATTTCTAAAATATTGATTTCT-CACAATCAGGGATACTCCA
1 GGGGATACTCCAACT-CCGATTTTATTTCCAAAACACCGATTT-TACATAATCAGGGATACTCCA
*
887132 ACCCCATTATTTTTA
64 ACCCCATTATTTTGA
* * * * * *
887147 CGGGTATACTCCAAC-CCAATTTTATTTTCAAAAAACCGATTTTATATAATTAGGGATACTCCAA
1 -GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGATTTTACATAATCAGGGATACTCCAA
**
887211 CCATATTATTTTCGA
65 CCCCATTATTTT-GA
* * * * * *
887226 GGGAATACTCCAACCCCGATTTTTTTTATTTCTAGAACACCGATTTTCCATAATCGGGGATACTC
1 GGGGATACTCCAACTCCGA----TTTTATTTCCAAAACACCGATTTTACATAATCAGGGATACTC
887291 TAGCCCCGTT
Statistics
Matches: 176, Mismatches: 36, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
77 1 0.01
78 65 0.37
79 76 0.43
83 34 0.19
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.34
Consensus pattern (78 bp):
GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGATTTTACATAATCAGGGATACTCCAAC
CCCATTATTTTGA
Found at i:887473 original size:51 final size:50
Alignment explanation
Indices: 887413--887581 Score: 169
Period size: 51 Copynumber: 3.3 Consensus size: 50
887403 AACTTTTCGA
*
887413 GGGGATACTCCAATCCCGATTTTATTTCTAAAATACCAATTTTCCACAATC
1 GGGGATACTCCAA-CCCGATTTTATTTCTAAAACACCAATTTTCCACAATC
* * * *
887464 GGGGATACTCTAACTCTGATTTTATTTCCAAAACACCAA-TTTCTCATAATC
1 GGGGATACTCCAAC-CCGATTTTATTTCTAAAACACCAATTTTC-CACAATC
* ** * * * *
887515 GGGGATACTTCAACCCTGACCTTATTTCTAAAGCATCGATTTTTCACAATC
1 GGGGATACTCCAACCC-GATTTTATTTCTAAAACACCAATTTTCCACAATC
**
887566 GGATATACTCCAACCC
1 GGGGATACTCCAACCC
887582 CGTTATTTTC
Statistics
Matches: 95, Mismatches: 19, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
50 6 0.06
51 86 0.91
52 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (50 bp):
GGGGATACTCCAACCCGATTTTATTTCTAAAACACCAATTTTCCACAATC
Found at i:897218 original size:19 final size:19
Alignment explanation
Indices: 897194--897231 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
897184 GTAGTTGAAG
897194 ACATAGAAAAGACCACCTT
1 ACATAGAAAAGACCACCTT
897213 ACATAGAAAAGACCACCTT
1 ACATAGAAAAGACCACCTT
897232 TGTAACCTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.26, G:0.11, T:0.16
Consensus pattern (19 bp):
ACATAGAAAAGACCACCTT
Found at i:901365 original size:55 final size:55
Alignment explanation
Indices: 901172--901588 Score: 496
Period size: 55 Copynumber: 7.4 Consensus size: 55
901162 TTCACCCTTT
* * *
901172 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAAAATTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACAC--AAGTTGGTGGCACTTTTC
* * * * *
901229 AGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCCACACAAATTGGTGGCATTTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTTC
* *
901285 AGTCCTCAAAGAGCAGGGCGCCTTTTAAAGCCCACACAAGTTGATGGCA-TTTCTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTT-TC
* * * *
901340 AATCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACACAAGATGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGG--A-C---GCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* * * * *
901401 AGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCGACACAAGTTGGTGGCATTATTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA--CTTTTC
901458 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* * **
901512 TAGTCCTTAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCC
1 -AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
901568 AGTCCTCAAAGAGCAGGACGC
1 AGTCCTCAAAGAGCAGGACGC
901589 TCTCTCCTTT
Statistics
Matches: 312, Mismatches: 35, Indels: 28
0.83 0.09 0.07
Matches are distributed among these distances:
54 7 0.02
55 121 0.39
56 50 0.16
57 85 0.27
58 2 0.01
59 1 0.00
61 44 0.14
62 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:901642 original size:149 final size:148
Alignment explanation
Indices: 901455--901876 Score: 459
Period size: 164 Copynumber: 2.7 Consensus size: 148
901445 TGGCATTATT
* * *
901455 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCTAGTCCT
1 TTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCT
*
901519 TAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAG
65 TAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTCCCAGTCCTCAAAGAGCAG
901584 GACGCTCTCTCCTTTCACCC
129 GACGCTCTCTCCTTTCACCC
*
901604 TTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGTACCTTTCAGTCCTT
1 TTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTT
* ***
901669 AAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTAGTCCTCAAAGAGCAGGA
66 AAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTCCCAGTCCTCAAAGAGCAGGA
* * * ** **
901734 CACCTTTGAAAGCCCACACAAGTTGGTGGCAT
131 C-GC--T-----CTCTC-C---TT--TCACCC
* * * *
901766 TTTCCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCGCACAAGTTGGTGGCACCTTTCAATCC
1 TTT--AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC
* * * *
901831 TCAAAGACCAGGACGCCTTTCAAAGCCCACATAAGTTGGTGGCATT
64 TTAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATT
901877 TTTTTTAGTC
Statistics
Matches: 232, Mismatches: 24, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
148 21 0.09
149 97 0.42
150 4 0.02
151 1 0.00
156 3 0.01
157 1 0.00
160 2 0.01
162 5 0.02
164 98 0.42
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (148 bp):
TTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTT
AAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTCCCAGTCCTCAAAGAGCAGGA
CGCTCTCTCCTTTCACCC
Found at i:901667 original size:55 final size:55
Alignment explanation
Indices: 901602--901961 Score: 404
Period size: 55 Copynumber: 6.4 Consensus size: 55
901592 CTCCTTTCAC
* *
901602 CCTTT-AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGTA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
*
901656 CCTTTCAGTCCTTAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
901711 -TTTTTAGTCCTCAAAGAGCAGGACACCTTTGAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
901765 -TTTTCCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCGCACAAGTTGGTGGCA
1 CCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
901820 CCTTTCAATCCTCAAAGACCAGGACGCCTTTCAAAGCCCACATAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
** * * * * * * *
901875 TTTTTTTTAGTCCTCAAAGGGCAGGATGCTTTCTCCCTTTAAAGACCACTCGAGTTGGTGGCA
1 --CCTTTCAGTCCTCAAAGAGCAGGACGC---CT---TTCAAAGCCCACACAAGTTGGTGGCA
901938 CC-TTCTAGTCCTCAAAGAGCAGGA
1 CCTTTC-AGTCCTCAAAGAGCAGGA
901962 TGCTCTCTCT
Statistics
Matches: 259, Mismatches: 35, Indels: 17
0.83 0.11 0.05
Matches are distributed among these distances:
54 58 0.22
55 136 0.53
56 3 0.01
57 20 0.08
60 4 0.02
61 17 0.07
63 21 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:901673 original size:94 final size:94
Alignment explanation
Indices: 901512--901682 Score: 263
Period size: 94 Copynumber: 1.8 Consensus size: 94
901502 TGGCATTTTC
* * *
901512 TAGTCCTTAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAA
1 TAGTCCTCAAAGAGCAAGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAA
901577 AGAGCAGGACGCTCTCTCCTTTCACCCTT
66 AGAGCAGGACGCTCTCTCCTTTCACCCTT
* * * *
901606 TAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGTACCTT-TCAGTCCTTA
1 TAGTCCTCAAAGAGCAAGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCA
901670 AAGAGCAGGACGC
65 AAGAGCAGGACGC
901683 CTTTCAAAGC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
94 66 0.96
95 3 0.04
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (94 bp):
TAGTCCTCAAAGAGCAAGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAA
AGAGCAGGACGCTCTCTCCTTTCACCCTT
Found at i:901795 original size:109 final size:109
Alignment explanation
Indices: 901599--901961 Score: 422
Period size: 109 Copynumber: 3.2 Consensus size: 109
901589 TCTCTCCTTT
* * *
901599 CACCCTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGTACCTTTCAG
1 CACCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAG
* *
901664 TCCTTAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
65 TCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGG
* *
901709 CA-TTTTTAGTCCTCAAAGAGCAGGACACCTTTGAAAGCCCACACAAGTTGGTGGCATTTTCCAG
1 CACCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAG
*
901773 TCCTCAAAGAGCAAGACGCCTTTCAAAGCCCGCACAAGTTGGTGG
65 TCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGG
* * * * * *
901818 CACCTTTCAATCCTCAAAGACCAGGACGCCTTTCAAAGCCCACATAAGTTGGTGGCATTTTTTTT
1 CACCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA---TTTTC
* * * * * * *
901883 AGTCCTCAAAGGGCAGGATGCTTTCTCCCTTTAAAGACCACTCGAGTTGGTGG
63 AGTCCTCAAAGAGCAAGACGC---CT---TTCAAAGCCCACACAAGTTGGTGG
*
901936 CACCTTCTAGTCCTCAAAGAGCAGGA
1 CACCTTTTAGTCCTCAAAGAGCAGGA
901962 TGCTCTCTCT
Statistics
Matches: 214, Mismatches: 28, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
108 3 0.01
109 97 0.45
110 49 0.23
112 18 0.08
113 4 0.02
115 2 0.01
118 41 0.19
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (109 bp):
CACCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGT
CCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGG
Found at i:901834 original size:258 final size:262
Alignment explanation
Indices: 901342--901846 Score: 795
Period size: 258 Copynumber: 1.9 Consensus size: 262
901332 CATTTCTCAA
901342 TCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACACAAGATGGTGGCACCTTTCAGTCCT
1 TCCTCAAAGAGCAGGACACCTTTTCC---TAAAGCCCACACAAGATGGTGGCACCTTTCAGTCCT
* *
901407 CAAAGAGTAGGACGCCTTTCAAAGCCGACACAAGTTGGTGGCATTATTTTTAGTCCTCAAAGAGC
63 CAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGC--TATTTTTAGTCCTCAAAGAGC
* * * *
901472 AGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTTAAAGAGCAAGACGCCTT
126 AGGACACCTTTGAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAAGACGCCTT
* * *
901537 TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCAC
191 TCAAAGCCCACACAAGTTGGTGGCACTTCCCAATCCTCAAAGACCAGGACGCTCTCTCCTTTCAC
901602 CCTTTAG
256 CCTTTAG
* * *
901609 TCCTCAAAGAGCAGGACACC-TTT-C-AAAGCCCACACAAGTTGGTGGTACCTTTCAGTCCTTAA
1 TCCTCAAAGAGCAGGACACCTTTTCCTAAAGCCCACACAAGATGGTGGCACCTTTCAGTCCTCAA
901671 AGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGC-ATTTTTAGTCCTCAAAGAGCAGGAC
66 AGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCTATTTTTAGTCCTCAAAGAGCAGGAC
901735 ACCTTTGAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAAGACGCCTTTCAAA
131 ACCTTTGAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAAGACGCCTTTCAAA
* *
901800 GCCCGCACAAGTTGGTGGCACCTT-TCAATCCTCAAAGACCAGGACGC
196 GCCCACACAAGTTGGTGGCA-CTTCCCAATCCTCAAAGACCAGGACGC
901847 CTTTCAAAGC
Statistics
Matches: 223, Mismatches: 14, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
258 124 0.56
259 3 0.01
261 72 0.32
265 1 0.00
266 3 0.01
267 20 0.09
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (262 bp):
TCCTCAAAGAGCAGGACACCTTTTCCTAAAGCCCACACAAGATGGTGGCACCTTTCAGTCCTCAA
AGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCTATTTTTAGTCCTCAAAGAGCAGGAC
ACCTTTGAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAAGACGCCTTTCAAA
GCCCACACAAGTTGGTGGCACTTCCCAATCCTCAAAGACCAGGACGCTCTCTCCTTTCACCCTTT
AG
Found at i:904250 original size:20 final size:20
Alignment explanation
Indices: 904225--904274 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
904215 GTAACCCATG
904225 TATCGATACAAGGAATGTTA
1 TATCGATACAAGGAATGTTA
*
904245 TATCGATACAAGGAATGTTG
1 TATCGATACAAGGAATGTTA
904265 TATCGATACA
1 TATCGATACA
904275 TCTTGGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (20 bp):
TATCGATACAAGGAATGTTA
Found at i:908185 original size:21 final size:21
Alignment explanation
Indices: 908156--908200 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
908146 AAGTTTTCAT
*
908156 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
908176 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
908198 TTT
1 TTT
908201 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:910426 original size:13 final size:13
Alignment explanation
Indices: 910408--910433 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
910398 CAATTTTTTG
910408 TGTATCGATACAT
1 TGTATCGATACAT
910421 TGTATCGATACAT
1 TGTATCGATACAT
910434 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:911088 original size:72 final size:72
Alignment explanation
Indices: 910816--911106 Score: 260
Period size: 72 Copynumber: 4.1 Consensus size: 72
910806 GATCCTAACA
* * * * *
910816 ACCTTAAAAAATTTAAACTCATATAATAATACCCAAAAAATAAATTTAAATTTTTACAATTAAAT
1 ACCTT-AAAAATTTAAACTCACATAATCATACCCAAAAAATAAATTTAAA-GTTTACAAATAAAA
910881 ATAAATAAT
64 ATAAATAAT
* *
910890 ACCTTAAAAATTTAAACTCACATAATCA-AACCAAAAAATAAATTTATAGTTTACAAATAAAAAT
1 ACCTTAAAAATTTAAACTCACATAATCATACCCAAAAAATAAATTTAAAGTTTACAAATAAAAAT
*
910954 AAATTAT
66 AAATAAT
* * * * * *
910961 ATCTT-AAAA---AAACTCGCATAATCATACCC--AGAA-AAAGTTAAACTTCTAAAAATAAAAA
1 ACCTTAAAAATTTAAACTCACATAATCATACCCAAAAAATAAATTTAAAGTT-TACAAATAAAAA
911019 TAAA-AAT
65 TAAATAAT
* ** * * * *
911026 ACCTTAAAAAATTTAAATTCGTATAATCAGA-CTAGAAAACAAATTTAAAGTTATACAAATAAAA
1 ACCTT-AAAAATTTAAACTCACATAATCATACCCAAAAAATAAATTTAAAGTT-TACAAATAAAA
*
911090 ATAAATCAT
64 ATAAATAAT
*
911099 ATCTTAAA
1 ACCTTAAA
911107 TTTTTTTTAA
Statistics
Matches: 177, Mismatches: 29, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
65 15 0.08
66 18 0.10
67 18 0.10
68 3 0.02
69 1 0.01
70 18 0.10
71 26 0.15
72 46 0.26
73 27 0.15
74 5 0.03
ACGTcount: A:0.56, C:0.12, G:0.03, T:0.29
Consensus pattern (72 bp):
ACCTTAAAAATTTAAACTCACATAATCATACCCAAAAAATAAATTTAAAGTTTACAAATAAAAAT
AAATAAT
Found at i:911226 original size:40 final size:38
Alignment explanation
Indices: 911182--911304 Score: 107
Period size: 40 Copynumber: 3.3 Consensus size: 38
911172 ACCCAAAAAG
911182 AAATTTAAACTTCTACAAATAAAAATAAAAATACCTTAAA
1 AAATTTAAACTTCTACAAATAAAAATAAAAATA-CTT-AA
* * *
911222 AAATTTAAACTTGTA-TAATCAAACA-AAAAA-A--T--
1 AAATTTAAACTTCTACAAAT-AAAAATAAAAATACTTAA
* *
911254 AAATTTAAAGTTTTACAAATAAAAATAAATAATATCTTAA
1 AAATTTAAACTTCTACAAATAAAAATAAA-AATA-CTTAA
911294 AAATTTAAACT
1 AAATTTAAACT
911305 CATATAATCA
Statistics
Matches: 65, Mismatches: 8, Indels: 20
0.70 0.09 0.22
Matches are distributed among these distances:
32 17 0.26
33 6 0.09
34 2 0.03
35 2 0.03
38 2 0.03
39 8 0.12
40 28 0.43
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.31
Consensus pattern (38 bp):
AAATTTAAACTTCTACAAATAAAAATAAAAATACTTAA
Found at i:911260 original size:188 final size:180
Alignment explanation
Indices: 910932--911294 Score: 521
Period size: 188 Copynumber: 2.0 Consensus size: 180
910922 AAAAAATAAA
* * *
910932 TTTATAGTTTACAAATAAAAATAAATTATATCTTAAAAAAACTCGCATAATCATACCCAGAAAAA
1 TTTAAAGTTTACAAATAAAAATAAATCATATCTTAAAAAAACTCGCATAATCATACCCAAAAAAA
* * *
910997 GTTAAACTTCTAAAAATAAAAATAAAAATACCTTAAAAAATTTAAATTCGTATAATCAGACTAGA
66 GTTAAACTTCTAAAAATAAAAATAAAAATACCTTAAAAAATTTAAATTCGTATAATCAAACAAAA
*
911062 AAACAAATTTAAAGTTATACAAATAAAAATAAATCATATCTTAAATTTTT
131 AAACAAATTTAAAGTTATACAAATAAAAATAAATAATATCTTAAATTTTT
* *
911112 TTTAAAGTTATACAAATAAAAATAAATCATATCTTAAAAAATTTAAACTTGTATAATCATACCCA
1 TTTAAAGTT-TACAAATAAAAATAAATCATATCTT--AAAA---AAACTCGCATAATCATACCC-
* *
911177 AAAAGAAATTTAAACTTCTACAAATAAAAATAAAAATACCTTAAAAAATTTAAACTT-GTATAAT
59 AAAA-AAAGTTAAACTTCTAAAAATAAAAATAAAAATACCTTAAAAAATTTAAA-TTCGTATAAT
* *
911241 CAAACAAAAAAATAAATTTAAAGTTTTACAAATAAAAATAAATAATATCTTAAA
122 CAAACAAAAAAACAAATTTAAAGTTATACAAATAAAAATAAATAATATCTTAAA
911295 AATTTAAACT
Statistics
Matches: 161, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
180 8 0.05
181 24 0.15
183 4 0.02
186 18 0.11
187 3 0.02
188 102 0.63
189 2 0.01
ACGTcount: A:0.55, C:0.10, G:0.04, T:0.31
Consensus pattern (180 bp):
TTTAAAGTTTACAAATAAAAATAAATCATATCTTAAAAAAACTCGCATAATCATACCCAAAAAAA
GTTAAACTTCTAAAAATAAAAATAAAAATACCTTAAAAAATTTAAATTCGTATAATCAAACAAAA
AAACAAATTTAAAGTTATACAAATAAAAATAAATAATATCTTAAATTTTT
Found at i:911386 original size:218 final size:216
Alignment explanation
Indices: 911112--912191 Score: 1297
Period size: 218 Copynumber: 5.0 Consensus size: 216
911102 TTAAATTTTT
* * * *
911112 TTTAAAGTTATACAAATAAAAATAAATCATATCTTAAAAAATTTAAACTTGTATAATCATAC-CC
1 TTTAAACTTCTACAAATAAAAATAAATAATA-CTT-AAAAATTTAAACTTGTATAATCATACACA
* * * *
911176 AAAAAGAAATTTAAACTTCTACAAATAAAAATAAA-AATACCTTAAAAAATTTAAACTTGTATAA
64 AAAAATAAATTTAAACTTCTACAAATAAAAATAAATAATAACTT-AAATATTTAAACTCGTATAA
* * *
911240 TCAAACAAAAAAATAAATTTAAAGTTTTACAAATAAAAATAAATAATATCTTAAAAATTTAAACT
128 TCAAACTAAAAAATAAATTTAAA-TTTTACAAATAAAAATAAATTATACCTTAAAAATTTAAACT
911305 CATATAATCATACTCAAAAAATAAA
192 CATATAATCATACTCAAAAAATAAA
* * ** * *
911330 TTTAAACTTCAACAAATAGAAATAAATTGTACCTTAAAAAATTTAAACTCGTATAATCATACTCA
1 TTTAAACTTCTACAAATAAAAATAAATAATA-CTT-AAAAATTTAAACTTGTATAATCATACACA
** * *
911395 AAAAATAAATTTAAGTTTCTACAGATAAAGAA-AAATAATACCTTAAA-ATTTAAACTCGTATAA
64 AAAAATAAATTTAAACTTCTACAAATAAA-AATAAATAATAACTTAAATATTTAAACTCGTATAA
* * *
911458 TTAAACTGAAAAATAAATTTAAACTTCTACAAATAAAAATAAATTATACCTTAAAAATTTAAACT
128 TCAAACTAAAAAATAAATTTAAA-TTTTACAAATAAAAATAAATTATACCTTAAAAATTTAAACT
* *
911523 CGTATAATCATA-TCCAAGAAAAGAAA
192 CATATAATCATACT-CAA-AAAATAAA
* * * * *
911549 TTTAAACTTCTACAAGTAAAAATAAATAATACTTGAAAATTTAAAATTATATAATCAAACACGAA
1 TTTAAACTTCTACAAATAAAAATAAATAATACTTAAAAATTTAAACTTGTATAATCATACAC-AA
* * * *
911614 AAAAAAAATTTTAACATT-TACAAATAAAAATAAATAATAAATTAAATATTAAAACTCGTATAAT
65 AAAATAAATTTAAAC-TTCTACAAATAAAAATAAATAATAACTTAAATATTTAAACTCGTATAAT
* * *
911678 -----TAAAAAATAAATTTAAACTTTTATAAATAAAAATAAATTATACCTTAAAAATTTAAATTT
129 CAAACTAAAAAATAAATTTAAA-TTTTACAAATAAAAATAAATTATACCTTAAAAATTTAAACTC
*
911738 ATATAATCATACCCAAAAAAATAAA
193 ATATAATCATACTC-AAAAAATAAA
* * * * * * *
911763 TTTAAATTTCTACAAGT-AAAATAAATAATACTTGAAAATTTAAATTTATATAATTAAACACAAA
1 TTTAAACTTCTACAAATAAAAATAAATAATACTTAAAAATTTAAACTTGTATAATCATACAC--A
*
911827 AAAAATAAATTTAAACTTCTACAAATAAAAATAAATAATAAATTAAATATTTAAACTCGTATAAT
64 AAAAATAAATTTAAACTTCTACAAATAAAAATAAATAATAACTTAAATATTTAAACTCGTATAAT
* *
911892 TAAACTAAAAAATAAATTTAAATTTCGACAAATAAAAATAAATTATACCTTAAAAAATTTAAACT
129 CAAACTAAAAAATAAATTTAAATTT-TACAAATAAAAATAAATTATACCTT-AAAAATTTAAACT
** * **
911957 TTTATAATCATACTTAAAAAGCAAA
192 CATATAATCATACTCAAAAAATAAA
* * **
911982 TTTAAACTTCTACAAATAAAAATAAATTATACATTAAAAATTTAAACTTGTATAATCATGCTTAA
1 TTTAAACTTCTACAAATAAAAATAAATAATAC-TTAAAAATTTAAACTTGTATAATCATACACAA
* * *
912047 AAAATAAATTTAAACTTCTACAAATAAAAATAAATAATAAC-TAAATACTTAAAGTCATATAATC
65 AAAATAAATTTAAACTTCTACAAATAAAAATAAATAATAACTTAAATATTTAAACTCGTATAATC
* **
912111 AAATTAAAAAATAAATTTAAATTTTCACAAATAAAAATAAATTATATTTTAAAAATTTAAACTCA
130 AAACTAAAAAATAAATTTAAATTTT-ACAAATAAAAATAAATTATACCTTAAAAATTTAAACTCA
*
912176 TATAATTATACT-AAAA
194 TATAATCATACTCAAAA
912192 GACTTTTACA
Statistics
Matches: 751, Mismatches: 88, Indels: 48
0.85 0.10 0.05
Matches are distributed among these distances:
213 44 0.06
214 149 0.20
215 2 0.00
216 4 0.01
217 49 0.07
218 246 0.33
219 188 0.25
220 47 0.06
221 22 0.03
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.32
Consensus pattern (216 bp):
TTTAAACTTCTACAAATAAAAATAAATAATACTTAAAAATTTAAACTTGTATAATCATACACAAA
AAATAAATTTAAACTTCTACAAATAAAAATAAATAATAACTTAAATATTTAAACTCGTATAATCA
AACTAAAAAATAAATTTAAATTTTACAAATAAAAATAAATTATACCTTAAAAATTTAAACTCATA
TAATCATACTCAAAAAATAAA
Found at i:911716 original size:26 final size:27
Alignment explanation
Indices: 911643--911716 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 27
911633 ACAAATAAAA
911643 ATAAATAATAAATTAAATATTAAAACTCGT
1 ATAAATAA-AAA-TAAAT-TTAAAACTCGT
* **
911673 ATAATTAAAAAATAAATTT-AAACTTTT
1 ATAAAT-AAAAATAAATTTAAAACTCGT
911700 ATAAATAAAAATAAATT
1 ATAAATAAAAATAAATT
911717 ATACCTTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 11 0.28
27 11 0.28
28 2 0.05
29 5 0.13
30 8 0.21
31 2 0.05
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.35
Consensus pattern (27 bp):
ATAAATAAAAATAAATTTAAAACTCGT
Found at i:912171 original size:26 final size:28
Alignment explanation
Indices: 912111--912171 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 28
912101 TCATATAATC
* *
912111 AAATTAAAAAATAAATTTAAATTTTCAC
1 AAATTTAAAAATAAATTTAAATTTTCAA
*
912139 AAA--TAAAAATAAA-TTATATTTT-AA
1 AAATTTAAAAATAAATTTAAATTTTCAA
912163 AAATTTAAA
1 AAATTTAAA
912172 CTCATATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 4 0.14
25 8 0.29
26 13 0.46
28 3 0.11
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (28 bp):
AAATTTAAAAATAAATTTAAATTTTCAA
Found at i:912191 original size:72 final size:72
Alignment explanation
Indices: 911112--912191 Score: 1108
Period size: 73 Copynumber: 14.9 Consensus size: 72
911102 TTAAATTTTT
* * * * * **
911112 TTTAAAGTTATACAAATAAAAATAAATCATATCTTAAAAAATTTAAACTTGTATAATCATACCCA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTT-AAAAATTTAAACTCGTATAATCATACTAA
*
911177 AAAAGAAA
65 AAAATAAA
* * *
911185 TTTAAACTTCTACAAATAAAAATAAA-AATACCTTAAAAAATTTAAACTTGTATAATCAAACAAA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTT-AAAAATTTAAACTCGTATAATCATACTAA
911249 AAAATAAA
65 AAAATAAA
* * * *
911257 TTTAAAGTTTTACAAATAAAAATAAATAATATCTTAAAAATTTAAACTCATATAATCATACTCAA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAATCATACT-AA
911322 AAAATAAA
65 AAAATAAA
* * **
911330 TTTAAACTTCAACAAATAGAAATAAATTGTACCTTAAAAAATTTAAACTCGTATAATCATACTCA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTT-AAAAATTTAAACTCGTATAATCATACT-A
911395 AAAAATAAA
64 AAAAATAAA
** * * * *
911404 TTTAAGTTTCTACAGATAAAGAA-AAATAATACCTT-AAAATTTAAACTCGTATAATTAAACTGA
1 TTTAAACTTCTACAAATAAA-AATAAATAATACCTTAAAAATTTAAACTCGTATAATCATACTAA
911467 AAAATAAA
65 AAAATAAA
* *
911475 TTTAAACTTCTACAAATAAAAATAAATTATACCTTAAAAATTTAAACTCGTATAATCATATCCAA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAATCATA-CTAA
*
911540 GAAAAGAAA
65 -AAAATAAA
* * * ** * *
911549 TTTAAACTTCTACAAGTAAAAATAAATAATA-CTTGAAAATTTAAAATTATATAATCAAACACGA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAATC--ATACTA
*
911613 AAAAAAAAA
64 AAAAATAAA
* ** * *
911622 TTTTAACATT-TACAAATAAAAATAAATAATAAATTAAATATTAAAACTCGTAT-A--AT--TAA
1 TTTAAAC-TTCTACAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAATCATACTAA
911681 AAAATAAA
65 AAAATAAA
* * * * ** *
911689 TTTAAACTTTTATAAATAAAAATAAATTATACCTTAAAAATTTAAATTTATATAATCATACCCAA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAATCATA--CTA
911754 AAAAATAAA
64 AAAAATAAA
* * * * ** * * *
911763 TTTAAATTTCTACAAGT-AAAATAAATAATA-CTTGAAAATTTAAATTTATATAATTAAACACAA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAA-T-CATAC-T
911826 AAAAAATAAA
63 AAAAAATAAA
** * * *
911836 TTTAAACTTCTACAAATAAAAATAAATAATAAATTAAATATTTAAACTCGTATAATTAAACTAAA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAATCATACTAAA
911901 AAATAAA
66 AAATAAA
* * * **
911908 TTTAAATTTCGACAAATAAAAATAAATTATACCTTAAAAAATTTAAACTTTTATAATCATACTTA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTT-AAAAATTTAAACTCGTATAATCATAC-TA
**
911973 AAAAGCAAA
64 AAAAATAAA
* * * *
911982 TTTAAACTTCTACAAATAAAAATAAATTATACATTAAAAATTTAAACTTGTATAATCATGCTTAA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAATCATAC-TAA
912047 AAAATAAA
65 AAAATAAA
* * * * * * *
912055 TTTAAACTTCTACAAATAAAAATAAATAATAAC-TAAATACTTAAAGTCATATAATCAAATTAAA
1 TTTAAACTTCTACAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAATCATACTAAA
912119 AAATAAA
66 AAATAAA
* * ** * *
912126 TTTAAA-TTTTCACAAATAAAAATAAATTATATTTTAAAAATTTAAACTCATATAATTATACTAA
1 TTTAAACTTCT-ACAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAATCATACTAA
912190 AA
65 AA
912192 GACTTTTACA
Statistics
Matches: 845, Mismatches: 133, Indels: 59
0.81 0.13 0.06
Matches are distributed among these distances:
66 2 0.00
67 49 0.06
68 1 0.00
69 1 0.00
70 7 0.01
71 73 0.09
72 241 0.29
73 253 0.30
74 197 0.23
75 21 0.02
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.32
Consensus pattern (72 bp):
TTTAAACTTCTACAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAATCATACTAAA
AAATAAA
Found at i:912354 original size:23 final size:25
Alignment explanation
Indices: 912320--912386 Score: 77
Period size: 23 Copynumber: 2.8 Consensus size: 25
912310 CAAACTAATC
*
912320 TTACAAATAAAAATAAATTATAC-T
1 TTACAAATAAAAATAAATTAAACTT
*
912344 TTA-AAAT-AAAATAATTTTAAACTT
1 TTACAAATAAAAATAA-ATTAAACTT
*
912368 TTACAAATAACAATAAATT
1 TTACAAATAAAAATAAATT
912387 TAAATTCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
22 7 0.20
23 9 0.26
24 7 0.20
25 6 0.17
26 6 0.17
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (25 bp):
TTACAAATAAAAATAAATTAAACTT
Found at i:913340 original size:24 final size:25
Alignment explanation
Indices: 913307--913358 Score: 88
Period size: 24 Copynumber: 2.1 Consensus size: 25
913297 AATTACCCAC
913307 GTGATAGGATCTATGGTAGGGC-AT
1 GTGATAGGATCTATGGTAGGGCAAT
*
913331 GTGATGGGATCTATGGTAGGGCAAT
1 GTGATAGGATCTATGGTAGGGCAAT
913356 GTG
1 GTG
913359 CTATTACCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 21 0.81
25 5 0.19
ACGTcount: A:0.23, C:0.08, G:0.40, T:0.29
Consensus pattern (25 bp):
GTGATAGGATCTATGGTAGGGCAAT
Found at i:914054 original size:19 final size:18
Alignment explanation
Indices: 914012--914066 Score: 76
Period size: 19 Copynumber: 3.0 Consensus size: 18
914002 TATATCATAT
914012 TTATATTTAA-AATTTTA
1 TTATATTTAATAATTTTA
*
914029 ATATATTTAATAATTTATA
1 TTATATTTAATAATTT-TA
914048 TTATATTTAATAATATTTA
1 TTATATTTAATAAT-TTTA
914067 CATTAATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.27
18 5 0.15
19 17 0.52
20 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTATATTTAATAATTTTA
Found at i:914088 original size:31 final size:29
Alignment explanation
Indices: 914013--914090 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 29
914003 ATATCATATT
*
914013 TATATTTAAAATTTTAAT-ATATTTAATAA
1 TATATTT-TAATTTTAATAATATTTAATAA
* *
914042 TTTATATT-ATATTTAATAATATTTACATTAA
1 TATATTTTAAT-TTTAATAATATTTA-A-TAA
914073 TATATTTTAATTTTAATA
1 TATATTTTAATTTTAATA
914091 CCATAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
27 2 0.05
28 6 0.15
29 12 0.31
30 1 0.03
31 16 0.41
32 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (29 bp):
TATATTTTAATTTTAATAATATTTAATAA
Found at i:914425 original size:20 final size:22
Alignment explanation
Indices: 914395--914434 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
914385 AAAAAAAAGC
914395 AAAACATAAAAATT-TATTTTT
1 AAAACATAAAAATTATATTTTT
914416 AAAA-ATAAAAATTATATTT
1 AAAACATAAAAATTATATTT
914435 CTCGAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAACATAAAAATTATATTTTT
Found at i:917235 original size:24 final size:25
Alignment explanation
Indices: 917208--917267 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 25
917198 CAAATTATAA
*
917208 CTCCCCCTTAATTAAAAAATAT-TT
1 CTCCCCCTTAATGAAAAAATATCTT
* *
917232 CTCCCCCTT-AGGAAAAAATTTCTT
1 CTCCCCCTTAATGAAAAAATATCTT
*
917256 CTCCCCTTTAAT
1 CTCCCCCTTAAT
917268 CTCTCTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 9 0.31
24 19 0.66
25 1 0.03
ACGTcount: A:0.30, C:0.30, G:0.03, T:0.37
Consensus pattern (25 bp):
CTCCCCCTTAATGAAAAAATATCTT
Found at i:923508 original size:14 final size:14
Alignment explanation
Indices: 923489--923576 Score: 66
Period size: 14 Copynumber: 6.9 Consensus size: 14
923479 ATTACTGTTC
923489 ATCACTATTCATAT
1 ATCACTATTCATAT
923503 ATCACTATTC----
1 ATCACTATTCATAT
**
923513 ATCACTGCTCATAT
1 ATCACTATTCATAT
923527 ATCACTATTC----
1 ATCACTATTCATAT
**
923537 ATCACTGCTCATAT
1 ATCACTATTCATAT
*
923551 ATCACTATTCATGT
1 ATCACTATTCATAT
*
923565 ATCACTGTTCAT
1 ATCACTATTCAT
923577 CACTGTTCAT
Statistics
Matches: 56, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
10 16 0.29
14 40 0.71
ACGTcount: A:0.30, C:0.26, G:0.05, T:0.40
Consensus pattern (14 bp):
ATCACTATTCATAT
Found at i:923513 original size:24 final size:24
Alignment explanation
Indices: 923486--923562 Score: 136
Period size: 24 Copynumber: 3.2 Consensus size: 24
923476 TACATTACTG
**
923486 TTCATCACTATTCATATATCACTA
1 TTCATCACTGCTCATATATCACTA
923510 TTCATCACTGCTCATATATCACTA
1 TTCATCACTGCTCATATATCACTA
923534 TTCATCACTGCTCATATATCACTA
1 TTCATCACTGCTCATATATCACTA
923558 TTCAT
1 TTCAT
923563 GTATCACTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.30, C:0.27, G:0.03, T:0.40
Consensus pattern (24 bp):
TTCATCACTGCTCATATATCACTA
Found at i:923555 original size:38 final size:38
Alignment explanation
Indices: 923513--923591 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 38
923503 ATCACTATTC
*
923513 ATCACTGCTCATATATCACTATTCATCACTGCTCATAT
1 ATCACTACTCATATATCACTATTCATCACTGCTCATAT
* * * * *
923551 ATCACTATTCATGTATCACTGTTCATCACTGTTCATGT
1 ATCACTACTCATATATCACTATTCATCACTGCTCATAT
923589 ATC
1 ATC
923592 GATACATTGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.39
Consensus pattern (38 bp):
ATCACTACTCATATATCACTATTCATCACTGCTCATAT
Found at i:923604 original size:13 final size:13
Alignment explanation
Indices: 923586--923624 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
923576 TCACTGTTCA
923586 TGTATCGATACAT
1 TGTATCGATACAT
*
923599 TGTATCGATACAG
1 TGTATCGATACAT
923612 TGTATCGATACAT
1 TGTATCGATACAT
923625 GTGAATAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:925759 original size:21 final size:22
Alignment explanation
Indices: 925730--925771 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
925720 AGGAGGAACT
* *
925730 AAATCAGTTGGAAAA-GAAAAG
1 AAATAAGTTGCAAAATGAAAAG
925751 AAATAAGTTGCAAAATGAAAA
1 AAATAAGTTGCAAAATGAAAA
925772 TGATGAGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.60, C:0.05, G:0.19, T:0.17
Consensus pattern (22 bp):
AAATAAGTTGCAAAATGAAAAG
Found at i:945225 original size:32 final size:33
Alignment explanation
Indices: 945184--945247 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
945174 ACAATTCTTT
* *
945184 ATGTATCGATACAATG-AACATGTATTGATACA
1 ATGTATCGATACAAAGCAACATGTATCGATACA
*
945216 ATGTATCGATACAAAGCAATATGTATCGATAC
1 ATGTATCGATACAAAGCAACATGTATCGATAC
945248 TTTCTAGGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGCAACATGTATCGATACA
Found at i:947369 original size:79 final size:79
Alignment explanation
Indices: 947237--948065 Score: 687
Period size: 79 Copynumber: 10.5 Consensus size: 79
947227 CATTCATGTT
* * * * * **
947237 TTTTATTTCTAAGATACTGATTTTCCACCATCAAGGATACTCCAACCCCGTTATTTTCGAAGGGA
1 TTTTATTTCTAAAACACAGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGGA
947302 TACTCCAACCCCAG
66 TACTCCAACCCCAG
* * * * * ** *
947316 CTTTATTTCTAAAATACAGATTTTTCACCATCAGGGATACTCCAACCTCGTTATTTTTTAGGGGA
1 TTTTATTTCTAAAACACAGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGGA
* **
947381 TACTCTAACTTC-G
66 TACTCCAACCCCAG
* * * ** *
947394 ATTTTATTTTTAAAACACCGATTTTTCACAATCGGGGATACTCCAACCTCGTTATTTTTTAGGGG
1 -TTTTATTTCTAAAACACAGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGG
* *
947459 ATACTCCAGCCCTAG
65 ATACTCCAACCCCAG
* * * * *
947474 TTTTATTTCCAAAACACCGATTTTTCATAATCAGGGATACTCCAACCCTGTTA-TTTCTG-AGGT
1 TTTTATTTCTAAAACACAGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTC-GAAGG-
*
947537 GATACTTCAACCCCAG
64 GATACTCCAACCCCAG
* * * * *
947553 TTTTATTTCCAAAACATCA-ATTTTCCACAATCGAGGATACTCCAACCTCGTTATTTTCGAGGGG
1 TTTTATTTCTAAAACA-CAGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGG
* **
947617 ATATTCCAACCCTGG
65 ATACTCCAACCCCAG
* * *
947632 TTTTATTTCCAAAACATC-GATTTTTCACCATCGGGGATACTCCAACCCCATTATTTTCG-AGAG
1 TTTTATTTCTAAAACA-CAGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAAG-G
*
947695 GATACTCCAACCCCGAT
64 GATACTCCAACCCC-AG
* ** *
947712 TTTTATTTTTAAAACATTGATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTC-AAGGGG
1 TTTTATTTCTAAAACACAGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAA-GGG
* * * *
947776 ATGCTCCAATCTCGG
65 ATACTCCAACCCCAG
* * * ** *
947791 CTTTATTTCTAAAACGTCA-A-TTTTCTATAATCGGGGATACTCCAACCCTATTATTTTCGAAAG
1 TTTTATTTCTAAAAC-ACAGATTTTTC-ACAATCGGGGATACTCCAACCCCGTTATTTTCGAAGG
* *
947854 GATACTCTAACCCCAAT
64 GATACTCCAACCCC-AG
* * * * *
947871 TTTTATTTCTAAAATATCA-ATTTTTCACAATCGGGGATACTCCAAACCCATTATTTTTGAGGGG
1 TTTTATTTCTAAAACA-CAGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGG
* * * **
947935 ATGCTCTAATCCTGG
65 ATACTCCAACCCCAG
* * * * * * *
947950 CTTTAGTTCTAAAACATCA-ATTTTCCATAATCGGGGATACTCTAACCCCGTTATTTTTGAGGGG
1 TTTTATTTCTAAAACA-CAGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGG
* *
948014 ATACTCAAACCTC-G
65 ATACTCCAACCCCAG
* *
948028 ATTTTATTTCCAAAACATCA-ATTTTCCA-ACATCGGGGA
1 -TTTTATTTCTAAAACA-CAGATTTTTCACA-ATCGGGGA
948066 ATGTACTTCA
Statistics
Matches: 615, Mismatches: 114, Indels: 42
0.80 0.15 0.05
Matches are distributed among these distances:
78 13 0.02
79 464 0.75
80 132 0.21
81 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.35
Consensus pattern (79 bp):
TTTTATTTCTAAAACACAGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGGA
TACTCCAACCCCAG
Found at i:947527 original size:158 final size:159
Alignment explanation
Indices: 947256--948065 Score: 864
Period size: 158 Copynumber: 5.1 Consensus size: 159
947246 TAAGATACTG
* ** * **
947256 ATTTTCCACCATCAAGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCAGCTTTA
1 ATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTA
* ** * *
947321 TTTCTAAAATA-CAGATTTTTCACCATCAGGGATACTCCAA-CCTCGTTATTTTTTAGGGGATAC
66 TTTCTAAAACATC-GATTTTTCATAATCGGGGATACTCCAACCCT-GTTATTTTTGAGGGGATAC
** * * *
947384 TCTAACTTCGA-TTTTATTTTTAAAACACCG
129 TCTAACCCCGATTTTTATTTCTAAAACATCA
* * ** * * *
947414 ATTTTTCACAATCGGGGATACTCCAACCTCGTTATTTTTTAGGGGATACTCCAGCCCTAGTTTTA
1 ATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTA
* * * * *
947479 TTTCCAAAACACCGATTTTTCATAATCAGGGATACTCCAACCCTGTTATTTCTGAGGTGATACT-
66 TTTCTAAAACATCGATTTTTCATAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGATACTC
* *
947543 TCAACCCC-AGTTTTATTTCCAAAACATCA
131 T-AACCCCGATTTTTATTTCTAAAACATCA
* * * *
947572 ATTTTCCACAATCGAGGATACTCCAACCTCGTTATTTTCGAGGGGATATTCCAACCCTGGTTTTA
1 ATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTA
* ** ** * *
947637 TTTCCAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCCATTATTTTCGAGAGGATACTC
66 TTTCTAAAACATCGATTTTTCATAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGATACTC
* * **
947702 CAACCCCGATTTTTATTTTTAAAACATTG
131 TAACCCCGATTTTTATTTCTAAAACATCA
* * *
947731 ATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATGCTCCAA-TCTCGGCTTT
1 ATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCT-GGCTTT
* * * * **
947795 ATTTCTAAAACGTC-AATTTTCTATAATCGGGGATACTCCAACCCTATTATTTTCGAAAGGATAC
65 ATTTCTAAAACATCGATTTTTC-ATAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGATAC
* *
947859 TCTAACCCCAATTTTTATTTCTAAAATATCA
129 TCTAACCCCGATTTTTATTTCTAAAACATCA
* * * * * * *
947890 ATTTTTCACAATCGGGGATACTCCAAACCCATTATTTTTGAGGGGATGCTCTAATCCTGGCTTTA
1 ATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTA
* * * * *
947955 GTTCTAAAACATCAATTTTCCATAATCGGGGATACTCTAACCCCGTTATTTTTGAGGGGATACTC
66 TTTCTAAAACATCGATTTTTCATAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGATACTC
* * *
948020 AAACCTCGA-TTTTATTTCCAAAACATCA
131 TAACCCCGATTTTTATTTCTAAAACATCA
948048 ATTTTCCA-ACATCGGGGA
1 ATTTTCCACA-ATCGGGGA
948066 ATGTACTTCA
Statistics
Matches: 551, Mismatches: 90, Indels: 22
0.83 0.14 0.03
Matches are distributed among these distances:
157 3 0.01
158 282 0.51
159 259 0.47
160 7 0.01
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (159 bp):
ATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTA
TTTCTAAAACATCGATTTTTCATAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGATACTC
TAACCCCGATTTTTATTTCTAAAACATCA
Found at i:948102 original size:159 final size:157
Alignment explanation
Indices: 947256--948065 Score: 781
Period size: 159 Copynumber: 5.1 Consensus size: 157
947246 TAAGATACTG
* ** * * **
947256 ATTTTCCACCATCAAGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCAGCTTTA
1 ATTTTCCACAATCGGGGATACTCCAA-CCCGTTATTTTCGAGGGGATACTCCAATCCTGGCTTTA
* * * ** * * * ** *
947321 TTTCTAAAATA-CAGATTTTTCACCATCAGGGATACTCCAACCTCGTTATTTTTTAGGGGATACT
65 TTTCCAAAACATCA-ATTTTCCATAATCGGGGATACTCCAACCCCATTATTTTCGAGAGGATACT
** ** * *
947385 CTAACTTCGA-TTTTATTTTTAAAACACCG
129 C-AACCCCGATTTTTATTTCCAAAACATCA
* ** ** * *
947414 ATTTTTCACAATCGGGGATACTCCAACCTCGTTATTTTTTAGGGGATACTCCAGCCCTAGTTTTA
1 ATTTTCCACAATCGGGGATACTCCAACC-CGTTATTTTCGAGGGGATACTCCAATCCTGGCTTTA
* * * * **
947479 TTTCCAAAACACCGATTTTTCATAATCAGGGATACTCCAACCCTGTTA-TTTCTGAG-GTGATAC
65 TTTCCAAAACATCAATTTTCCATAATCGGGGATACTCCAACCCCATTATTTTC-GAGAG-GATAC
*
947542 TTCAACCCC-AGTTTTATTTCCAAAACATCA
128 -TCAACCCCGATTTTTATTTCCAAAACATCA
* * * *
947572 ATTTTCCACAATCGAGGATACTCCAACCTCGTTATTTTCGAGGGGATATTCCAACCCTGGTTTTA
1 ATTTTCCACAATCGGGGATACTCCAACC-CGTTATTTTCGAGGGGATACTCCAATCCTGGCTTTA
* * **
947637 TTTCCAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCCATTATTTTCGAGAGGATACTC
65 TTTCCAAAACATCAATTTTCCATAATCGGGGATACTCCAACCCCATTATTTTCGAGAGGATACT-
** **
947702 CAACCCCGATTTTTATTTTTAAAACATTG
129 CAACCCCGATTTTTATTTCCAAAACATCA
* *
947731 ATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATGCTCCAAT-CTCGGCTTT
1 ATTTTCCACAATCGGGGATACTCCAA-CCCGTTATTTTCGAGGGGATACTCCAATCCT-GGCTTT
* * * * *
947795 ATTTCTAAAACGTCAATTTTCTATAATCGGGGATACTCCAACCCTATTATTTTCGAAAGGATACT
64 ATTTCCAAAACATCAATTTTCCATAATCGGGGATACTCCAACCCCATTATTTTCGAGAGGATACT
* * *
947860 CTAACCCCAATTTTTATTTCTAAAATATCA
129 C-AACCCCGATTTTTATTTCCAAAACATCA
* * * * *
947890 ATTTTTCACAATCGGGGATACTCCAAACCCATTATTTTTGAGGGGATGCTCTAATCCTGGCTTTA
1 ATTTTCCACAATCGGGGATACTCC-AACCCGTTATTTTCGAGGGGATACTCCAATCCTGGCTTTA
* * * * * *
947955 GTTCTAAAACATCAATTTTCCATAATCGGGGATACTCTAACCCCGTTATTTTTGAGGGGATACTC
65 TTTCCAAAACATCAATTTTCCATAATCGGGGATACTCCAACCCCATTATTTTCGAGAGGATACTC
*
948020 AAACCTCGA-TTTTATTTCCAAAACATCA
130 -AACCCCGATTTTTATTTCCAAAACATCA
948048 ATTTTCCA-ACATCGGGGA
1 ATTTTCCACA-ATCGGGGA
948066 ATGTACTTCA
Statistics
Matches: 553, Mismatches: 83, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
157 9 0.02
158 267 0.48
159 271 0.49
160 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (157 bp):
ATTTTCCACAATCGGGGATACTCCAACCCGTTATTTTCGAGGGGATACTCCAATCCTGGCTTTAT
TTCCAAAACATCAATTTTCCATAATCGGGGATACTCCAACCCCATTATTTTCGAGAGGATACTCA
ACCCCGATTTTTATTTCCAAAACATCA
Found at i:958960 original size:79 final size:79
Alignment explanation
Indices: 958868--959023 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
958858 GATAAAGATA
* * * * **
958868 GGGTTGGAGTATCCCCTCAGAAATAA-GGGGGCGGAAGTATCTCC-GATTGTGAAAAATCGGTGT
1 GGGTTGAAATATCCCCTCAAAAATAACGGGGGCGG-AGTATC-CCTGATTATGAAAAATCAATGT
958931 TCTGAAAATAAAACCG
64 TCTGAAAATAAAACCG
* ** *
958947 GGGTTGAAATATCCTCTCAAAAATAACGGGGTTGGAGTATCCCTGATTATGGAAAATCAATGTTC
1 GGGTTGAAATATCCCCTCAAAAATAACGGGGGCGGAGTATCCCTGATTATGAAAAATCAATGTTC
*
959012 TGGAAATAAAAC
66 TGAAAATAAAAC
959024 TAAGGTTGGA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
78 2 0.03
79 56 0.88
80 6 0.09
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (79 bp):
GGGTTGAAATATCCCCTCAAAAATAACGGGGGCGGAGTATCCCTGATTATGAAAAATCAATGTTC
TGAAAATAAAACCG
Found at i:959054 original size:51 final size:51
Alignment explanation
Indices: 958976--959073 Score: 115
Period size: 51 Copynumber: 1.9 Consensus size: 51
958966 AAAATAACGG
* * *
958976 GGTTGGAGTATCCCTGATTATGGAAAATCAATGTTCTGGAAATAAAACTAA
1 GGTTGGAGTATCCCCGATGATGAAAAATCAATGTTCTGGAAATAAAACTAA
* * *** *
959027 GGTTGGAGTTTCCCCGATGGTGAAAAATTGGTGTTTTGGAAATAAAA
1 GGTTGGAGTATCCCCGATGATGAAAAATCAATGTTCTGGAAATAAAA
959074 TCGAGTTGGA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 38 1.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATGATGAAAAATCAATGTTCTGGAAATAAAACTAA
Found at i:959240 original size:51 final size:51
Alignment explanation
Indices: 959183--959292 Score: 130
Period size: 51 Copynumber: 2.2 Consensus size: 51
959173 TAACGGGATA
* * *
959183 GGAGTATCCCTGATTATGGAAAATCAATGTTCTAGAAATAAAACTAGGGTT
1 GGAGTATCCATGATGATGGAAAATCAATGTTCTAGAAATAAAACCAGGGTT
* * *** * *
959234 GGAGTATCTATGATGGTGGAAAATTGGTGTTTTGGAAATAAAACCAGGGTT
1 GGAGTATCCATGATGATGGAAAATCAATGTTCTAGAAATAAAACCAGGGTT
959285 GGAGTATC
1 GGAGTATC
959293 TCCTCGAAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (51 bp):
GGAGTATCCATGATGATGGAAAATCAATGTTCTAGAAATAAAACCAGGGTT
Found at i:959439 original size:28 final size:28
Alignment explanation
Indices: 959405--959478 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
959395 GAAATAAAAC
*
959405 CGGGGTTGGAGTATCCCCTTGAAAATAA
1 CGGGGTTGGAGTATCCCCTCGAAAATAA
* * *
959433 TGGGGTTAGAGTATCTCCTCGAAAATAA
1 CGGGGTTGGAGTATCCCCTCGAAAATAA
*
959461 CGGGATTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
959479 GATTATAGAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAA
Found at i:960538 original size:52 final size:50
Alignment explanation
Indices: 960405--961570 Score: 441
Period size: 52 Copynumber: 24.9 Consensus size: 50
960395 GTGATAAAGG
* * * * *
960405 TGCCAATATGCTGATT-TAGGACCAGTGATATTGGGCTTAAAG-ATGTAAAGAA
1 TGCCAATATGCTGATTCAAGG-CCAGCGACATTGGACTTAAAGAAAG--AAG-A
* * * * * * *
960457 TGTCAATGTGCTAATTCACGGTCAGCGACATTAGACTTGAAGACAAGAAGAA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-AAGAAG-A
* * * * * *
960509 TGCCAATGTGCTGATTCAAGGCCAACGACATTGG-GTTCAGGAATGTTAAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAG---AAGA
* * * * * *
960561 TGCCAATATGCTAATTCAAGGCCAACGATATCGGACTTAAAG-ATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
* * * * *
960610 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATA-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
* * *
960659 TGCCAATATGCTGATTCAAGGCCAGCG-CTATCGAACTTAAAGATA-AAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGAC-ATTGGACTTAAAGAAAGAAGA
* *
960708 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT----------G-
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
* * *
960747 TGCCAATGTGCTGATTGAAGGCTAGCGACATTGGACTTAAAGACAAG--G-
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-AAGAAGA
* *
960795 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT-----------A
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
* * * *
960834 TGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAGAGACAAG--G-
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-AAGAAGA
* *
960882 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT-----------A
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
* * * *
960921 TGCCAATGTGCTGATTCAAGGCCAG-GAACATTGGTCTT--AGAGAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCG-ACATTGGACTTAAAGAAAGAAGA
* *
960969 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT-----------A
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
* ** *
961008 TGCCAATATGCTGATTCAAGGCCAGCGGCATTGGTTTTAGAGACAAG--G-
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-AAGAAGA
* * *
961056 TGCCAATATGCTGATT------CAGCGATATTGGGCTT------AT----
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
* * * * * *
961090 -GCTAATGTGCTCATTCAAGGCTAGCGACATTGGTCTTAGAGACAAG--G-
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-AAGAAGA
* * * * ** *
961137 TGCTAATATGTTGATTCAAGGCCAGCGATATTGGAC-TCAAGATGGTAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAG--AAGA
* *
961188 TGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTT----AAAG--G-
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
** * * *
961231 TGCTGATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGACA-AAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA--A-AGAAGA
* * * *
961283 CGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTTAAAG-ATGAAGT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
* * * * * *
961332 TGCCAATGTACTGATTCAAGGCCAGCAATATTGGACTTAAAG-ATGACAAA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGA-AGA
* * * *
961382 GGCAACAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG-ATGAAGG
1 TGC--CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
* * * * *
961433 TTCCAATGTGCTGATTCAAGGCTAGCAACATTGGACTTAAAGATGACA-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA--A-AGAAGA
* * * *
961485 CGCCAATAGGCTGATTCAAGGCCAACGATATTGGACTT----AAAG--G-
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
* * *
961528 TGCCAATATGCTGATTTAAGGCTAGCGACATTGGTCTTAAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA
961571 TAATGGTGCC
Statistics
Matches: 860, Mismatches: 158, Indels: 197
0.71 0.13 0.16
Matches are distributed among these distances:
33 12 0.01
35 1 0.00
38 1 0.00
39 147 0.17
40 1 0.00
42 12 0.01
43 62 0.07
44 2 0.00
45 1 0.00
46 3 0.00
47 6 0.01
48 150 0.17
49 197 0.23
50 7 0.01
51 41 0.05
52 206 0.24
53 9 0.01
54 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (50 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGAAGA
Found at i:960691 original size:98 final size:97
Alignment explanation
Indices: 960397--961581 Score: 548
Period size: 87 Copynumber: 12.6 Consensus size: 97
960387 TGAGAAAAGT
* * * * *
960397 GATAAAGGTGCCAATATGCTGATT-TAGGACCAGTGATATTGGGCTTAAAGATGTAAAGAATGTC
1 GATAAAGGTGCCAATATGCTGATTCAAGG-CCAGCGACATTGGGCTT-AA-A-GTAAAG-GTGCC
* * * * ** *
960461 AATGTGCTAATTCACGGTCAGCGAC-ATTAGACTTGAA
61 AATATGCTGATTCAAGGCCAGCG-CTATCGGACTTAAA
* * * * *
960498 GACAAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGG-TTCAGGAATGTTAAAGAT
1 GA-TA-AAG-GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT-A--AA-G-TAAAGGT
* * *
960562 GCCAATATGCTAATTCAAGGCCAACGATATCGGACTTAAA
58 GCCAATATGCTGATTCAAGGCCAGCGCTATCGGACTTAAA
* * * *
960602 GATGAAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGGTGCCAATA
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAG-TAAAGGTGCCAATA
*
960667 TGCTGATTCAAGGCCAGCGCTATCGAACTTAAA
65 TGCTGATTCAAGGCCAGCGCTATCGGACTTAAA
* * *
960700 GATAAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T----T----GTGCCAATGT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGTAAAGGTGCCAATAT
* * *
960756 GCTGATTGAAGGCTAGCGAC-ATTGGACTTAAA
66 GCTGATTCAAGGCCAGCG-CTATCGGACTTAAA
* * *
960788 GA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T----T--A--TGCCAATGT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGTAAAGGTGCCAATAT
** * *
960843 GCTGATTCAAGGCCAGCGAC-ATTAGTCTTAGA
66 GCTGATTCAAGGCCAGCG-CTATCGGACTTAAA
* * *
960875 GA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T----T--A--TGCCAATGT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGTAAAGGTGCCAATAT
* * *
960930 GCTGATTCAAGGCCAG-GAAC-ATTGGTCTTAGA
66 GCTGATTCAAGGCCAGCG--CTATCGGACTTAAA
* *
960962 GA-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T----T--A--TGCCAATAT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGTAAAGGTGCCAATAT
* ** *
961017 GCTGATTCAAGGCCAGCGGC-ATTGGTTTTAGA
66 GCTGATTCAAGGCCAGC-GCTATCGGACTTAAA
* * * *
961049 GA-CAAGGTGCCAATATGCTGATT------CAGCGATATTGGGC-T----T--A--TGCTAATGT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGTAAAGGTGCCAATAT
* * * * *
961098 GCTCATTCAAGGCTAGCGAC-ATTGGTCTTAGA
66 GCTGATTCAAGGCCAGCG-CTATCGGACTTAAA
* * * * * *
961130 GA-CAAGGTGCTAATATGTTGATTCAAGGCCAGCGATATTGGACTCAAGATGGTAAAGGTGCCAA
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAA-A--GTAAAGGTGCCAA
* * *
961194 TATGCTAATTCAAGGCCAGCGATATTGGAC-T---
63 TATGCTGATTCAAGGCCAGCGCTATCGGACTTAAA
** * * * **
961225 --TAAAGGTGCTGATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGACAAAGACGCCA
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAG-T---AAAGGTGCCA
**
961288 ATATGCTGATTCAAGGCCAGCGAC-ATTAGACTTAAA
62 ATATGCTGATTCAAGGCCAGCG-CTATCGGACTTAAA
* * * * * * * *
961324 GATGAAGTTGCCAATGTACTGATTCAAGGCCAGCAATATTGGACTTAAAGATGACAAAG-GCAAC
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAG-T-A-AAGGTGC--C
* *
961388 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
61 AATATGCTGATTCAAGGCCAGCGCTATCGGACTTAAA
* * * * * * *
961425 GATGAAGGTTCCAATGTGCTGATTCAAGGCTAGCAACATTGGACTTAAAGATGACAAAGGCGCCA
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAG-T---AAAGGTGCCA
* * * *
961490 ATAGGCTGATTCAAGGCCAACGATATTGGAC-T---
62 ATATGCTGATTCAAGGCCAGCGCTATCGGACTTAAA
* * * *
961522 --TAAAGGTGCCAATATGCTGATTTAAGGCTAGCGACATTGGTCTTAAAGATAATGGTGCCA
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAG-TAAAGGTGCCA
961582 CAAAGTTGTG
Statistics
Matches: 920, Mismatches: 111, Indels: 115
0.80 0.10 0.10
Matches are distributed among these distances:
80 1 0.00
81 72 0.08
86 1 0.00
87 277 0.30
88 37 0.04
89 2 0.00
91 1 0.00
92 10 0.01
93 1 0.00
94 37 0.04
95 80 0.09
96 1 0.00
97 2 0.00
98 82 0.09
99 34 0.04
100 3 0.00
101 189 0.21
102 9 0.01
103 9 0.01
104 63 0.07
105 9 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (97 bp):
GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGTAAAGGTGCCAATAT
GCTGATTCAAGGCCAGCGCTATCGGACTTAAA
Found at i:960762 original size:39 final size:39
Alignment explanation
Indices: 960708--961034 Score: 260
Period size: 39 Copynumber: 7.7 Consensus size: 39
960698 AAGATAAAGA
960708 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTG
* * * * *
960747 TGCCAATGTGCTGATTGAAGGCTAGCGACATTGGACTTAAAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT---------G
*
960795 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTG
* * **
960834 TGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAGAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCG--A-TA---TT-G-GGC-TTG
*
960882 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTG
* * *
960921 TGCCAATGTGCTGATTCAAGGCCAG-GAACATTGGTCTTAGAGAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCG-ATATTGGGCTT---------G
*
960969 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTG
961008 TGCCAATATGCTGATTCAAGGCCAGCG
1 TGCCAATATGCTGATTCAAGGCCAGCG
961035 GCATTGGTTT
Statistics
Matches: 230, Mismatches: 29, Indels: 58
0.73 0.09 0.18
Matches are distributed among these distances:
38 1 0.00
39 119 0.52
40 2 0.01
41 2 0.01
42 4 0.02
45 4 0.02
46 2 0.01
47 2 0.01
48 93 0.40
49 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (39 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTG
Found at i:960824 original size:87 final size:87
Alignment explanation
Indices: 960659--961170 Score: 743
Period size: 87 Copynumber: 5.9 Consensus size: 87
960649 AAGATAAAGG
* * ** * * *
960659 TGCCAATATGCTGATTCAAGGCCAGCG-CTATCGAACTTAAAGATAAAGATGCCAATATGCTGAT
1 TGCCAATGTGCTGATTCAAGGCCAGCGAC-ATTGGTCTTAGAGA-CAAGGTGCCAATATGCTGAT
*
960723 TCAAGGCCAGCGATATTGGGCTTG
64 TCAAGGCCAGCGATATTGGGCTTA
* * * *
960747 TGCCAATGTGCTGATTGAAGGCTAGCGACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTC
960812 AAGGCCAGCGATATTGGGCTTA
66 AAGGCCAGCGATATTGGGCTTA
*
960834 TGCCAATGTGCTGATTCAAGGCCAGCGACATTAGTCTTAGAGACAAGGTGCCAATATGCTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTC
960899 AAGGCCAGCGATATTGGGCTTA
66 AAGGCCAGCGATATTGGGCTTA
*
960921 TGCCAATGTGCTGATTCAAGGCCAG-GAACATTGGTCTTAGAGAGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCG-ACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATT
960985 CAAGGCCAGCGATATTGGGCTTA
65 CAAGGCCAGCGATATTGGGCTTA
* * *
961008 TGCCAATATGCTGATTCAAGGCCAGCGGCATTGGTTTTAGAGACAAGGTGCCAATATGCTGATT-
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTC
961072 -----CAGCGATATTGGGCTTA
66 AAGGCCAGCGATATTGGGCTTA
* * * * *
961089 TGCTAATGTGCTCATTCAAGGCTAGCGACATTGGTCTTAGAGACAAGGTGCTAATATGTTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTC
961154 AAGGCCAGCGATATTGG
66 AAGGCCAGCGATATTGG
961171 ACTCAAGATG
Statistics
Matches: 388, Mismatches: 27, Indels: 19
0.89 0.06 0.04
Matches are distributed among these distances:
81 73 0.19
86 1 0.00
87 276 0.71
88 37 0.10
89 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (87 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGGCTTA
Found at i:961248 original size:43 final size:43
Alignment explanation
Indices: 961182--961272 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 43
961172 CTCAAGATGG
* *
961182 TAAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACT
1 TAAAGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGACT
** * * *
961225 TAAAGGTGCTGATGTGCTGATTCAAGGCCAACGACATTGGTCT
1 TAAAGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGACT
961268 TAAAG
1 TAAAG
961273 ATGACAAAGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (43 bp):
TAAAGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGACT
Found at i:961382 original size:101 final size:101
Alignment explanation
Indices: 961097--961571 Score: 503
Period size: 101 Copynumber: 4.8 Consensus size: 101
961087 TATGCTAATG
* * * * * * * * * *
961097 TGCTCATTCAAGGCTAGCGACATTGGTCTTAGAGA-CAAGGTGCTAATATGTTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTTGCCAATGTGCTGATTCAAGGCCA
* * * ** *
961161 GCGATATTGGAC-TCAAGATGGTAAAGGTGCCAATA
66 GCAACATTGGACTTAAAGATGACAAAGGCGCCAATA
* **
961196 TGCTAATTCAAGGCCAGCGATATTGGACTT-AA-A-G--G-TGCTGATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTTGCCAATGTGCTGATTCAAGGCCA
* * * *
961255 ACGACATTGGTCTTAAAGATGACAAAGACGCCAATA
66 GCAACATTGGACTTAAAGATGACAAAGGCGCCAATA
* * *
961291 TGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAAGTTGCCAATGTACTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTTGCCAATGTGCTGATTCAAGGCCA
* **
961356 GCAATATTGGACTTAAAGATGACAAAGGCAACAATA
66 GCAACATTGGACTTAAAGATGACAAAGGCGCCAATA
*
961392 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTT-CCAATGTGCTGATTCAAGGCT
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-GTTGCCAATGTGCTGATTCAAGGCC
961456 AGCAACATTGGACTTAAAGATGACAAAGGCGCCAATA
65 AGCAACATTGGACTTAAAGATGACAAAGGCGCCAATA
* * * * *
961493 GGCTGATTCAAGGCCAACGATATTGGACTT-AA-A-G--G-TGCCAATATGCTGATTTAAGGCTA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTTGCCAATGTGCTGATTCAAGGCCA
* *
961552 GCGACATTGGTCTTAAAGAT
66 GCAACATTGGACTTAAAGAT
961572 AATGGTGCCA
Statistics
Matches: 324, Mismatches: 43, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
94 31 0.10
95 85 0.26
96 2 0.01
97 2 0.01
98 3 0.01
99 27 0.08
100 3 0.01
101 168 0.52
102 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (101 bp):
TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTTGCCAATGTGCTGATTCAAGGCCA
GCAACATTGGACTTAAAGATGACAAAGGCGCCAATA
Found at i:961533 original size:43 final size:43
Alignment explanation
Indices: 961480--961569 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
961470 TAAAGATGAC
*
961480 AAAGGCGCCAATAGGCTGATTCAAGGCCAACGATATTGGACTT
1 AAAGGCGCCAATAGGCTGATTCAAGGCCAACGACATTGGACTT
* * * * * *
961523 AAAGGTGCCAATATGCTGATTTAAGGCTAGCGACATTGGTCTT
1 AAAGGCGCCAATAGGCTGATTCAAGGCCAACGACATTGGACTT
961566 AAAG
1 AAAG
961570 ATAATGGTGC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (43 bp):
AAAGGCGCCAATAGGCTGATTCAAGGCCAACGACATTGGACTT
Found at i:961633 original size:26 final size:26
Alignment explanation
Indices: 961604--961661 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
961594 CTTAAAAAGA
* *
961604 AAAAGATGCCATGGAGTTGTGGACTT
1 AAAAGATGCCACGGAGTTATGGACTT
*
961630 AAAAGGGTGCCACGGAGTTATGGACTT
1 AAAA-GATGCCACGGAGTTATGGACTT
961657 AAAAG
1 AAAAG
961662 GAAAAAGAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.34, C:0.12, G:0.31, T:0.22
Consensus pattern (26 bp):
AAAAGATGCCACGGAGTTATGGACTT
Found at i:961660 original size:60 final size:62
Alignment explanation
Indices: 961575--961695 Score: 174
Period size: 60 Copynumber: 2.0 Consensus size: 62
961565 TAAAGATAAT
*
961575 GGTGCCACAAAGTTGTGGACTTAAAAAGAAAAAGA-TGCCATGGAGTTGTGGAC-TTAAAAG
1 GGTGCCACAAAGTTATGGACTTAAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTAAAAG
** * * *
961635 GGTGCCACGGAGTTATGGACTTAAAAGGAAAAAGAGTGCCGTGGAGTTGTGGGCTTTAAAA
1 GGTGCCACAAAGTTATGGACTTAAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTAAAA
961696 AGAAAAAGGT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
60 31 0.58
61 16 0.30
62 6 0.11
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.22
Consensus pattern (62 bp):
GGTGCCACAAAGTTATGGACTTAAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTAAAAG
Found at i:961661 original size:27 final size:27
Alignment explanation
Indices: 961610--961662 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
961600 AAGAAAAAGA
* *
961610 TGCCATGGAGTTGTGGACTTAAAAGGG
1 TGCCACGGAGTTATGGACTTAAAAGGG
961637 TGCCACGGAGTTATGGACTTAAAAGG
1 TGCCACGGAGTTATGGACTTAAAAGG
961663 AAAAAGAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.34, T:0.25
Consensus pattern (27 bp):
TGCCACGGAGTTATGGACTTAAAAGGG
Found at i:961668 original size:34 final size:34
Alignment explanation
Indices: 961630--961785 Score: 116
Period size: 34 Copynumber: 4.8 Consensus size: 34
961620 TTGTGGACTT
*
961630 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGA
* ** * *
961664 AAAAGAGTGCCGTGGAGTTGTGGGCTTTAAAAAGA
1 AAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGA
* *
961699 AAAA-GGTACTACGGAGTTGTGGACTT-------
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGA
*
961725 AAAAGGGTGCCACAGAGTTGTGGACTTTGAAAA-GA
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT-AAAAGGA
* *
961760 AAAA-GGTGCCACAGAGTCGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
961786 TGGGAATAGA
Statistics
Matches: 96, Mismatches: 16, Indels: 21
0.72 0.12 0.16
Matches are distributed among these distances:
26 4 0.04
27 17 0.18
28 2 0.02
33 4 0.04
34 53 0.55
35 16 0.17
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.21
Consensus pattern (34 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGA
Found at i:961729 original size:61 final size:61
Alignment explanation
Indices: 961664--961785 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 61
961654 CTTAAAAGGA
*** * * * *
961664 AAAAGAGTGCCGTGGAGTTGTGGGCTTTAAAAAGAAAAAGGTACTACGGAGTTGTGGACTT
1 AAAAGAGTGCCACAGAGTTGTGGACTTTAAAAAGAAAAAGGTACCACAGAGTCGTGGACTT
* * *
961725 AAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAGAAAAAGGTGCCACAGAGTCGTGGACTT
1 AAAAGAGTGCCACAGAGTTGTGGACTTTAAAAAGAAAAAGGTACCACAGAGTCGTGGACTT
961786 TGGGAATAGA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.34, C:0.12, G:0.32, T:0.22
Consensus pattern (61 bp):
AAAAGAGTGCCACAGAGTTGTGGACTTTAAAAAGAAAAAGGTACCACAGAGTCGTGGACTT
Found at i:961743 original size:95 final size:94
Alignment explanation
Indices: 961585--961769 Score: 266
Period size: 95 Copynumber: 2.0 Consensus size: 94
961575 GGTGCCACAA
* * *
961585 AGTTGTGGACTTAAAAAGAAAAAGATGCCATGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTA
1 AGTTGTGGACTTAAAAAGAAAAAGATACCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTA
961650 TGGAC-TT-AAAAGGAAAAAGAGTGCCGTGG
66 TGGACTTTGAAAA-GAAAAAG-GTGCCGTGG
* * *
961679 AGTTGTGGGCTTTAAAAAGAAAAAGGTACTACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTT
1 AGTTGTGGAC-TTAAAAAGAAAAAGATACCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTT
*
961744 GTGGACTTTGAAAAGAAAAAGGTGCC
65 ATGGACTTTGAAAAGAAAAAGGTGCC
961770 ACAGAGTCGT
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
94 9 0.11
95 59 0.73
96 9 0.11
97 4 0.05
ACGTcount: A:0.36, C:0.11, G:0.31, T:0.22
Consensus pattern (94 bp):
AGTTGTGGACTTAAAAAGAAAAAGATACCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTA
TGGACTTTGAAAAGAAAAAGGTGCCGTGG
Found at i:961844 original size:31 final size:30
Alignment explanation
Indices: 961732--962232 Score: 468
Period size: 31 Copynumber: 16.0 Consensus size: 30
961722 CTTAAAAGGG
* * *
961732 TGCCACAGAGTTGTGGACTTTGAAAAGAAAAAGG
1 TGCCACTGAGTCGTGGACTTTG---AG-AAAAGA
* * *
961766 TGCCACAGAGTCGTGGACTTTGGGAATAGA
1 TGCCACTGAGTCGTGGACTTTGAGAAAAGA
* *
961796 TGCCACTAAGTCGTGGACTTTGAGAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAGAAAAGA
* * *
961826 TTGCCACTGAGTCATGGACTTTAAAAAAAAGA
1 -TGCCACTGAGTCGTGGACTTT-GAGAAAAGA
*
961858 TGCCACTAAGTCGTGGACTTTGAAGAAAAAAGA
1 TGCCACTGAGTCGTGGACTTTG-AG--AAAAGA
*
961891 TGCCACTGAGTCGTAGAC-TTGAAAGAAAAAGA
1 TGCCACTGAGTCGTGGACTTTG--AG-AAAAGA
* * * *
961923 TGCCATTGAGTTGTGGACTTTGAGAAGATA
1 TGCCACTGAGTCGTGGACTTTGAGAAAAGA
*
961953 TTGCCACTGAGTTGTGGACTTTGAAGAAAAGA
1 -TGCCACTGAGTCGTGGACTTTG-AGAAAAGA
* * *
961985 TGCCACTGAGTTGTGGACTTTGGGAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAGAAAAGA
*
962015 TGCCACTGAGTCATGGACTTTGAAGAAAAAAGA
1 TGCCACTGAGTCGTGGACTTTG-AG--AAAAGA
* *
962048 TGCCACTGAGTCGTGAACTTGGAAGAAAAGGA
1 TGCCACTGAGTCGTGGACTTTG-AGAAAA-GA
*
962080 TGCCACTGAGTCATGGAC-TT-AGAAAAGTGA
1 TGCCACTGAGTCGTGGACTTTGAGAAAA--GA
* * *
962110 TGCCACTGAGTTGTGGACTTTAAGAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAGAAAAGA
962140 TTGCCACTGAGTCGTGGACTTTGAAGAAAAGA
1 -TGCCACTGAGTCGTGGACTTTG-AGAAAAGA
* * * *
962172 TGCCACTAAGTCATGGACTTTGGGAACAGA
1 TGCCACTGAGTCGTGGACTTTGAGAAAAGA
* *
962202 TGCCACTGAGTCGAGGACTTTGAGAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAGAAAAGA
962232 T
1 T
962233 TTAAAGAATT
Statistics
Matches: 394, Mismatches: 55, Indels: 40
0.81 0.11 0.08
Matches are distributed among these distances:
29 6 0.02
30 112 0.28
31 133 0.34
32 67 0.17
33 55 0.14
34 21 0.05
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (30 bp):
TGCCACTGAGTCGTGGACTTTGAGAAAAGA
Found at i:962038 original size:157 final size:156
Alignment explanation
Indices: 961732--962214 Score: 593
Period size: 157 Copynumber: 3.1 Consensus size: 156
961722 CTTAAAAGGG
* * * * * * *
961732 TGCCACAGAGTTGTGGACTTTGAAAAGAAAAAGGTGCCACAGAGTCGTGGACTTTGGGAATAGAT
1 TGCCACTGAGTCGT-GAC-TTG-AAAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAGATAT
* * * * *
961797 GCCACTAAGTCGTGGACTTTG-AGAAGAGATTGCCACTGAGTCATGGACTTTAAAAAAAAGATGC
63 GCCACTGAGTTGTGGACTTTGAAGAAGAGATTGCCACTGAGTCGTGGACTTT-GAGAAAAGATGC
*
961861 CACTAAGTCGTGGACTTTGAAGAAAAAAGA
127 CACTAAGTCATGGACTTTGAAGAAAAAAGA
* *
961891 TGCCACTGAGTCGTAGACTTGAAAGAAAAAGATGCCATTGAGTTGTGGACTTTGAGAAGATATTG
1 TGCCACTGAGTCGT-GACTTGAAAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAGATA-TG
* * * *
961956 CCACTGAGTTGTGGACTTTGAAGAAAAGA-TGCCACTGAGTTGTGGACTTTGGGAAGAGATGCCA
64 CCACTGAGTTGTGGACTTTGAAGAAGAGATTGCCACTGAGTCGTGGACTTTGAGAAAAGATGCCA
*
962020 CTGAGTCATGGACTTTGAAGAAAAAAGA
129 CTAAGTCATGGACTTTGAAGAAAAAAGA
* * * * *
962048 TGCCACTGAGTCGTGAACTTGGAAGAAAAGGATGCCACTGAGTCATGGACTTAGAAAAG-TGATG
1 TGCCACTGAGTCGTG-ACTTGAAAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAGAT-ATG
962112 CCACTGAGTTGTGGACTTT-AAGAAGAGATTGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCC
64 CCACTGAGTTGTGGACTTTGAAGAAGAGATTGCCACTGAGTCGTGGACTTTG-AGAAAAGATGCC
* *
962176 ACTAAGTCATGGACTTTG--G-GAACAGA
128 ACTAAGTCATGGACTTTGAAGAAAAAAGA
962202 TGCCACTGAGTCG
1 TGCCACTGAGTCG
962215 AGGACTTTGA
Statistics
Matches: 283, Mismatches: 35, Indels: 17
0.84 0.10 0.05
Matches are distributed among these distances:
154 18 0.06
155 9 0.03
156 44 0.16
157 148 0.52
158 42 0.15
159 22 0.08
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (156 bp):
TGCCACTGAGTCGTGACTTGAAAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAGATATGCC
ACTGAGTTGTGGACTTTGAAGAAGAGATTGCCACTGAGTCGTGGACTTTGAGAAAAGATGCCACT
AAGTCATGGACTTTGAAGAAAAAAGA
Found at i:962159 original size:187 final size:187
Alignment explanation
Indices: 961766--962224 Score: 658
Period size: 187 Copynumber: 2.4 Consensus size: 187
961756 AAGAAAAAGG
* * * *
961766 TGCCACAGAGTCGTGGACTTTG-GGAATAGATGCCACTAAGTCGTGGACTTTGAGAAGAGATTGC
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTAAGTCGTGGACTTTGGGAAGAGA-TGC
* *
961830 CACTGAGTCATGGACTTT-AAAAAAAAGATGCCACTAAGTCGTGGACTTTGAAGAAAAAAGATGC
65 CACTGAGTCATGGACTTTGAAAAAAAAGATGCCACTAAGTCGTGAACTTGGAAGAAAAAAGATGC
* * * *
961894 CACTGAGTCGTAGACTTGAAAGAAAAAGATGCCATTGAGTTGTGGACTTTGAGAAGATAT
130 CACTGAGTCATAGACTT--AAGAAAAAGATGCCACTGAGTTGTGGACTTTAAGAAGAGAT
* * *
961954 TGCCACTGAGTTGTGGACTTTGAAGAAAAGATGCCACTGAGTTGTGGACTTTGGGAAGAGATGCC
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTAAGTCGTGGACTTTGGGAAGAGATGCC
* *
962019 ACTGAGTCATGGACTTTGAAGAAAAAAGATGCCACTGAGTCGTGAACTTGGAAG-AAAAGGATGC
66 ACTGAGTCATGGACTTTGAA-AAAAAAGATGCCACTAAGTCGTGAACTTGGAAGAAAAAAGATGC
* *
962083 CACTGAGTCATGGACTT-AGAAAAGTGATGCCACTGAGTTGTGGACTTTAAGAAGAGAT
130 CACTGAGTCATAGACTTAAGAAAA-AGATGCCACTGAGTTGTGGACTTTAAGAAGAGAT
* *
962141 TGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTAAGTCATGGACTTTGGGAACAGATGCC
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTAAGTCGTGGACTTTGGGAAGAGATGCC
962206 ACTGAGTCGA-GGACTTTGA
66 ACTGAGTC-ATGGACTTTGA
962225 GAAGAGATTT
Statistics
Matches: 244, Mismatches: 22, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
186 6 0.02
187 107 0.44
188 42 0.17
189 59 0.24
190 30 0.12
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.24
Consensus pattern (187 bp):
TGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTAAGTCGTGGACTTTGGGAAGAGATGCC
ACTGAGTCATGGACTTTGAAAAAAAAGATGCCACTAAGTCGTGAACTTGGAAGAAAAAAGATGCC
ACTGAGTCATAGACTTAAGAAAAAGATGCCACTGAGTTGTGGACTTTAAGAAGAGAT
Found at i:963553 original size:23 final size:21
Alignment explanation
Indices: 963533--963574 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
963523 TTTGTTTGTT
963533 TGTTTTT-TTTTGACATTTTTG
1 TGTTTTTATTTTGAC-TTTTTG
963554 TGTTTTTACTTTTGACTTTTT
1 TGTTTTTA-TTTTGACTTTTT
963575 CATCATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 5 0.26
23 7 0.37
ACGTcount: A:0.10, C:0.07, G:0.12, T:0.71
Consensus pattern (21 bp):
TGTTTTTATTTTGACTTTTTG
Found at i:970005 original size:51 final size:51
Alignment explanation
Indices: 969927--970025 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
969917 GAAATAACAG
* * * *
969927 GGTTGGAGTATCCCTGATTATGGAAAATCAATGTTTTGGAAATAAAACTGC
1 GGTTGGAGTATCCCCGATGATGAAAAATCAATGTTTTAGAAATAAAACTGC
* ***
969978 GGTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTTTAGAAATAAAAC
1 GGTTGGAGTATCCCCGATGATGAAAAATCAATGTTTTAGAAATAAAAC
970026 CGAGTTTGAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATGATGAAAAATCAATGTTTTAGAAATAAAACTGC
Found at i:970142 original size:75 final size:74
Alignment explanation
Indices: 969999--970144 Score: 175
Period size: 75 Copynumber: 2.0 Consensus size: 74
969989 CCCCGATGGT
* ** *
969999 GAAAAATTGGTGTTTTAGAAATAAAACCGAGTTTGAGAATCCCCTCGAAAATAATGAGGTTGGTG
1 GAAAAATTAGTGTTTTAGAAATAAAACCGAGTTTGAGAATCCCCTCGAAAATAACAAGGTTGGAG
970064 TATCCCCTC
66 TATCCCCTC
* * * * * * * *
970073 GAAAAATTAGTGTTTTGGAAATAAAATCGGGGTTTGAGTATCTCTTTGGAAATAACAAGGTTGGA
1 GAAAAATTAGTGTTTTAGAAATAAAA-CCGAGTTTGAGAATCCCCTCGAAAATAACAAGGTTGGA
970138 GTATCCC
65 GTATCCC
970145 TGATTATGGA
Statistics
Matches: 59, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
74 24 0.41
75 35 0.59
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (74 bp):
GAAAAATTAGTGTTTTAGAAATAAAACCGAGTTTGAGAATCCCCTCGAAAATAACAAGGTTGGAG
TATCCCCTC
Found at i:970192 original size:51 final size:51
Alignment explanation
Indices: 970131--970246 Score: 160
Period size: 51 Copynumber: 2.3 Consensus size: 51
970121 GAAATAACAA
* *
970131 GGTTGGAGTATCCCTGATTATGGAAAATCAATGTTCTGGAAATAAAACTAG
1 GGTTGGAGTATCCCTGATGATGGAAAATCAATGTTCTGGAAATAAAACCAG
* * *** *
970182 GGTTGGAGTATCCATGATGGTGGAAAATTGGTGTTTTGGAAATAAAACCAG
1 GGTTGGAGTATCCCTGATGATGGAAAATCAATGTTCTGGAAATAAAACCAG
970233 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
970247 CTCGGAAATA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCTGATGATGGAAAATCAATGTTCTGGAAATAAAACCAG
Found at i:970316 original size:130 final size:125
Alignment explanation
Indices: 970056--970382 Score: 365
Period size: 130 Copynumber: 2.6 Consensus size: 125
970046 AAAATAATGA
* * * * * * *
970056 GGTTGGTGTATCCCCTCGAAAAATTAGTGTTTTGGAAATAAAATCGGGGTTTGAGTATCTCTTTG
1 GGTTGGAGTA-CCCATCGAAAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCG
* * *
970121 GAAATAACAAGGTTGGAGTATCCCTGATTATGGAAAATCAATGTTCTGGAAATAAAACTAG
65 GAAATAACAAGGTTGGAGTATCCCTGATTATGGAAAATCAATATTCTAGAAATAAAACGAG
* * *
970182 GGTTGGAGTATCCAT-GATGGTGGAAAATTGGTGTTTTGGAAATAAAACCAGGGTTGGAGTATCC
1 GGTTGGAGTACCCATCGA------AAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCC
* ** *
970246 CCTCGGAAATAAC-GGGATTGGAGTAAT-CCTGATTATGGAAAATTGATATTTTAGAAATAAAAT
60 CCTCGGAAATAACAAGG-TTGGAGT-ATCCCTGATTATGGAAAATCAATATTCTAGAAATAAAA-
970309 CGA-
122 CGAG
* *
970312 GGTTGGAGTACCCCTCGAAAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCGA
1 GGTTGGAGTACCCATCGAAAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCGG
970377 AAATAA
66 AAATAA
970383 TGGGGTTAGA
Statistics
Matches: 169, Mismatches: 22, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
124 2 0.01
125 53 0.31
126 9 0.05
129 2 0.01
130 97 0.57
131 6 0.04
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.30
Consensus pattern (125 bp):
GGTTGGAGTACCCATCGAAAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCGG
AAATAACAAGGTTGGAGTATCCCTGATTATGGAAAATCAATATTCTAGAAATAAAACGAG
Found at i:970336 original size:46 final size:47
Alignment explanation
Indices: 970284--970379 Score: 149
Period size: 46 Copynumber: 2.1 Consensus size: 47
970274 CTGATTATGG
970284 AAAATTGATATTTTAGAAATAAAATCGAGGTTGGAGTA-CCCCTCGA
1 AAAATTGATATTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCGA
* * * *
970330 AAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCGA
1 AAAATTGATATTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCGA
970377 AAA
1 AAA
970380 TAATGGGGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
46 34 0.76
47 11 0.24
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.28
Consensus pattern (47 bp):
AAAATTGATATTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCGA
Found at i:970346 original size:79 final size:79
Alignment explanation
Indices: 970184--970328 Score: 197
Period size: 79 Copynumber: 1.8 Consensus size: 79
970174 AAAACTAGGG
* * * *
970184 TTGGAGTATCCATGATGGTGGAAAATTGGTGTTTTGGAAATAAAACCAGGGTTGGAGTATCCCCT
1 TTGGAGTATCCATGATGATGGAAAATTGATATTTTAGAAATAAAACCAGGGTTGGAGTATCCCCT
970249 CGGAAATAACGGGA
66 CGGAAATAACGGGA
* *
970263 TTGGAGTAATCC-TGATTATGGAAAATTGATATTTTAGAAATAAAATC-GAGGTTGGAGTA-CCC
1 TTGGAGT-ATCCATGATGATGGAAAATTGATATTTTAGAAATAAAACCAG-GGTTGGAGTATCCC
970325 CTCG
64 CTCG
970329 AAAAATTGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 8 0.14
79 46 0.79
80 4 0.07
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (79 bp):
TTGGAGTATCCATGATGATGGAAAATTGATATTTTAGAAATAAAACCAGGGTTGGAGTATCCCCT
CGGAAATAACGGGA
Found at i:970389 original size:28 final size:28
Alignment explanation
Indices: 970355--970428 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
970345 GAAATAAAAT
*
970355 CGGGGTTGGAGTATCCCCTCGAAAATAA
1 CGGGGTTGGAGTATCCCCTCAAAAATAA
* * *
970383 TGGGGTTAGAGTATCTCCTCAAAAATAA
1 CGGGGTTGGAGTATCCCCTCAAAAATAA
970411 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
970429 GATTATGAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCAAAAATAA
Found at i:973921 original size:52 final size:52
Alignment explanation
Indices: 973773--973901 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
973763 CGAAATATGA
973773 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
973825 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
973877 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
973902 AAGATCAGTG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:973928 original size:13 final size:13
Alignment explanation
Indices: 973910--973934 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
973900 CAAAGATCAG
973910 TGTATCGATACAA
1 TGTATCGATACAA
973923 TGTATCGATACA
1 TGTATCGATACA
973935 TTTTTTGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:973980 original size:19 final size:19
Alignment explanation
Indices: 973956--974020 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
973946 TGGCTTACAT
973956 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
973975 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
973988 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
*
974007 TGTATCAATACAAA
1 TGTATCGATACAAA
974021 TCGTTGAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:973992 original size:32 final size:32
Alignment explanation
Indices: 973951--974018 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
973941 GGCAATGGCT
*
973951 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCAA
*
973983 TACATTGTATCGATACAACACTTATGTATCAA
1 TACATTGTATCGATACAAAACTTATGTATCAA
974015 TACA
1 TACA
974019 AATCGTTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (32 bp):
TACATTGTATCGATACAAAACTTATGTATCAA
Found at i:973993 original size:13 final size:13
Alignment explanation
Indices: 973975--973999 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
973965 ACAAAACTTA
973975 TGTATCGATACAT
1 TGTATCGATACAT
973988 TGTATCGATACA
1 TGTATCGATACA
974000 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:974803 original size:52 final size:52
Alignment explanation
Indices: 974660--975575 Score: 430
Period size: 49 Copynumber: 17.9 Consensus size: 52
974650 GAAGAGTGAT
* * * * * * **
974660 AAAATGACCAATATGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAA
1 AAAATG-CCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAG-A
* * * * * *
974714 AAAGGATGTCAATGTGCTGATTCACGGTCAGCGACATTAGACTTGAAGATGAGA
1 AAA--ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
* **
974768 AAAATGCCAATGTGCTGATTCAAGGCCAACAACATTGGGTTTTAAAGATGATG-
1 AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATT-GGACTTAAAGATGA-GA
** * *
974821 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGA
1 AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGAT---GA-GA
** * * * *** * *
974877 GAAAAGTGATAAAGATGCTAATATTTTGATTCACGACCAATGATATTGGGCTTAAAGATGAGAA
1 -AAAA-TGCCAATG-TGC--------TGATTCAAGGCCAGCAACATTGGACTTAAAGATGAG-A
* * *
974941 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG-GA
1 AAA--ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
* * * *
974994 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G-G-
1 AAA-ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
* * * *
975042 ----TGCCAATGTGCTAATTCAGGGCTAGCGACATTGGACTTAAAGA--AG-
1 AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
** * * * *
975087 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAA
1 AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAG-A
* * * *
975140 AAAGGATGTCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAAAAT--G-
1 AAA--ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
** * * *
975191 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G-
1 AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
** * * * *
975240 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAA
1 AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAG-A
* *
975293 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT--G-
1 AAA--ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
* * * * * *
975344 AAAGTGTCAATATGCTGATTCAAGGCCAGCTATATTAGACTT-AA-A-G-G-
1 AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
*
975391 ----TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA--AG-
1 AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
** * * * * *
975436 AAGGTGTCAATATGCTGATTCAAGGCCAACTATATTGGACTTAGAAG--G-G-
1 AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTA-AAGATGAGA
* *
975485 ----TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AA-A-GACA
1 AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
** * * * * *
975530 AAGGTGCCAATATGCTAATTCAAGGCTAGCTATATTGGACTTAAAG
1 AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAG
975576 GAAGATGCCA
Statistics
Matches: 690, Mismatches: 112, Indels: 123
0.75 0.12 0.13
Matches are distributed among these distances:
43 69 0.10
44 4 0.01
45 38 0.06
47 2 0.00
48 2 0.00
49 228 0.33
50 6 0.01
51 10 0.01
52 73 0.11
53 51 0.07
54 9 0.01
55 143 0.21
56 3 0.00
57 2 0.00
58 4 0.01
59 3 0.00
63 7 0.01
64 8 0.01
65 1 0.00
67 27 0.04
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.26
Consensus pattern (52 bp):
AAAATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGA
Found at i:975005 original size:227 final size:228
Alignment explanation
Indices: 974609--975022 Score: 611
Period size: 227 Copynumber: 1.8 Consensus size: 228
974599 CCACTGTGCA
* * * *
974609 GATTCAAGGCCTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAATGACCAATAT
1 GATTCAAGGCCAGCAACACTGGACTTAAAGATGAAGAGGATGAAAAGTGATAAAATGACCAATAT
* * *
974674 GTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAC
66 GTTGATTCACGACCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAA
* * *
974739 GGTCAGCGACATTAGACTTGAAGATGAGAAAAATGCCAATGTGCTGATTCAAGGCCAACAACATT
131 GGCCAGCGACATTAGACTTAAAGATGAGAAAAATGCCAATATGCTGATTCAAGGCCAACAACATT
974804 GGGTTTTAAAGATGATGAAGGTGCCAATATGCT
196 GGGTTTTAAAGATGATGAAGGTGCCAATATGCT
* * * *
974837 GATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGA-GAAAAGTGATAAAGATG-CTAATA
1 GATTCAAGGCCAGCAACACTGGACTTAAAGATGAAGAGGATGAAAAGTGATAAA-ATGACCAATA
* *
974900 TTTTGATTCACGACCAATGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCA
65 TGTTGATTCACGACCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCA
* *
974965 AGGCCAGCTACATT-GAACTTAAAGATG-GAAAAGGTGCCAATATGCTGATTCAAGGCCA
130 AGGCCAGCGACATTAG-ACTTAAAGATGAGAAAA-ATGCCAATATGCTGATTCAAGGCCA
975023 GCTATATTGG
Statistics
Matches: 165, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
226 6 0.04
227 122 0.74
228 37 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (228 bp):
GATTCAAGGCCAGCAACACTGGACTTAAAGATGAAGAGGATGAAAAGTGATAAAATGACCAATAT
GTTGATTCACGACCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAA
GGCCAGCGACATTAGACTTAAAGATGAGAAAAATGCCAATATGCTGATTCAAGGCCAACAACATT
GGGTTTTAAAGATGATGAAGGTGCCAATATGCT
Found at i:975124 original size:49 final size:49
Alignment explanation
Indices: 974950--975580 Score: 677
Period size: 49 Copynumber: 12.9 Consensus size: 49
974940 AAAAGGATGT
* * * *
974950 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA---AGAAGGTGC
975002 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT-----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGC
* * * * * *
975045 CAATGTGCTAATTCAGGGCTAGCGACATTGGACTTAAAGAAGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGC
* *
975094 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAAAAAGGATGT
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT-A--A--AGAAGAAGG-TGC
* * *
975149 CAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAA-AATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAA-GAAGGTGC
* *
975198 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGC
* *
975247 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAAAAAGGATGT
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT-A--A--AGAAGAAGG-TGC
* * * * *
975302 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGTGT
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGC
*
975351 CAATATGCTGATTCAAGGCCAGCTATATTAGACTT-----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGC
* * *
975394 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGT
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGC
*
975443 CAATATGCTGATTCAAGGCCAACTATATTGGACTT--AGAAG--GGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGC
* *
975488 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGACA-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA-AGAAGGTGC
* *
975537 CAATATGCTAATTCAAGGCTAGCTATATTGGACTTAAAGGAAGA
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA-GAAGA
975581 TGCCACCAAC
Statistics
Matches: 489, Mismatches: 57, Indels: 68
0.80 0.09 0.11
Matches are distributed among these distances:
43 73 0.15
44 1 0.00
45 36 0.07
47 8 0.02
48 3 0.01
49 229 0.47
50 17 0.03
52 36 0.07
54 17 0.03
55 69 0.14
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGC
Found at i:975226 original size:104 final size:98
Alignment explanation
Indices: 974941--975574 Score: 667
Period size: 104 Copynumber: 6.5 Consensus size: 98
974931 AAGATGAGAA
* * * *
974941 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGTCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA-A---AGAAGGTGCCAAT
* *
975006 ATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T-
61 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * * * * * * *
975037 AAAGGTGCCAATGTGCTAATTCAGGGCTAGCGACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGTCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA-AAGAAGGTGCCAATGTGC
* *
975102 TGATTCAAGGCCAGCTATATTGGACTTAACGATGAG
65 TGATTCAAGGCCAGCTACATTGGACTTAAAGAT--G
* * * *
975138 AAAAAGGATGTCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAAAATGAAGGTGCCAATA
1 --AAAGG-TGTCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAA-GAAGGTGCCAATG
* *
975203 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
62 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
975240 -AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAAAAAGGATGTCA
1 AAAGGTGTCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-A--A--A-AAGAAGG-TGCCA
975304 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
59 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
*
975344 AAA-GTGTCAATATGCTGATTCAAGGCCAGCTATATTAGACTT----A-AAGGTGCCAATGTGCT
1 AAAGGTGTCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAAGAAGGTGCCAATGTGCT
*
975403 GATTCAAGGCCAGCTACATTGGACTTAAAGAAG
66 GATTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
975436 -AAGGTGTCAATATGCTGATTCAAGGCCAACTATATTGGACTT-AGAAG--GGTGCCAATGTGCT
1 AAAGGTGTCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAAGAAGGTGCCAATGTGCT
*
975497 GATTCAAGGCCAGCTACATTGGACTTAAAGA-C
66 GATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
975529 AAAGGTGCCAATATGCTAATTCAAGGCTAGCTATATTGGACTTAAA
1 AAAGGTGTCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
975575 GGAAGATGCC
Statistics
Matches: 474, Mismatches: 36, Indels: 57
0.84 0.06 0.10
Matches are distributed among these distances:
91 2 0.00
92 121 0.26
93 5 0.01
94 84 0.18
95 39 0.08
96 5 0.01
98 35 0.07
99 5 0.01
101 1 0.00
102 1 0.00
103 12 0.03
104 162 0.34
105 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.26
Consensus pattern (98 bp):
AAAGGTGTCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAAGAAGGTGCCAATGTGCT
GATTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:975279 original size:153 final size:149
Alignment explanation
Indices: 974950--975573 Score: 771
Period size: 153 Copynumber: 4.2 Consensus size: 149
974940 AAAAGGATGT
* * * * *
974950 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG-G-AAAAGGTGCCAATATGCTGA
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAAAAAGGTGTCAATATGCTGA
* * * * *
975013 TTCAAGGCCAGCTATATTGGACTT---A-AAGGTGCCAATGTGCTAATTCAGGGCTAGCGACATT
66 TTCAAGGCCAGCTACATTGGACTTAAAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATT
975074 GGACTTAAAGAAGAAGGTGC
131 GGACTTAAAG-AGAAGGTGC
*
975094 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAAAAAGGATGTCAATGTGCTG
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAAAAAGG-TGTCAATATGCTG
* *
975159 ATTCAAGGTCAGCTACATTGGACTTAAAAATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
65 ATTCAAGGCCAGCTACATTGGACTT-AAAA-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGAC
975224 ATTGGACTTAAAGATGAAGGTGC
128 ATTGGACTTAAAGA-GAAGGTGC
*
975247 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAAAAAGGATGTCAATGTGCTG
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAAAAAGG-TGTCAATATGCTG
* * * *
975312 ATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGTGTCAATATGCTGATTCAAGGCCAGCTAT
65 ATTCAAGGCCAGCTACATTGGACTTAAA-A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGAC
*
975377 ATTAGACTT----A-AAGGTGC
128 ATTGGACTTAAAGAGAAGGTGC
* * *
975394 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-A--A--AGAAGAAGGTGTCAATATGCTGA
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAAAAAGGTGTCAATATGCTGA
* * * * *
975454 TTCAAGGCCAACTATATTGGACTTAGAAG--GGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
66 TTCAAGGCCAGCTACATTGGACTTAAAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATT
*
975517 GGACTTAAAGACAAAGGTGC
131 GGACTTAAAGA-GAAGGTGC
* *
975537 CAATATGCTAATTCAAGGCTAGCTATATTGGACTTAA
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
975574 AGGAAGATGC
Statistics
Matches: 428, Mismatches: 34, Indels: 36
0.86 0.07 0.07
Matches are distributed among these distances:
137 35 0.08
139 1 0.00
140 1 0.00
141 38 0.09
142 8 0.02
143 38 0.09
144 40 0.09
145 1 0.00
146 7 0.02
147 74 0.17
149 1 0.00
151 1 0.00
152 4 0.01
153 179 0.42
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (149 bp):
CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGATGAGAAAAAGGTGTCAATATGCTGA
TTCAAGGCCAGCTACATTGGACTTAAAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATT
GGACTTAAAGAGAAGGTGC
Found at i:975551 original size:94 final size:92
Alignment explanation
Indices: 975293--975576 Score: 446
Period size: 94 Copynumber: 3.1 Consensus size: 92
975283 ACGATGAGAA
* *
975293 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAA-GTGTCAATAT
1 AAAGGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA--AAAGGTGTCAATAT
*
975357 GCTGATTCAAGGCCAGCTATATTAGACTT
64 GCTGATTCAAGGCCAGCTATATTGGACTT
975386 AAA-GGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGTCAATATG
1 AAAGGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAA-AAGGTGTCAATATG
*
975450 CTGATTCAAGGCCAACTATATTGGACTT
65 CTGATTCAAGGCCAGCTATATTGGACTT
*
975478 AGAAGGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGACAAAGGTGCCAATAT
1 A-AAGGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-AAAGGTGTCAATAT
* *
975543 GCTAATTCAAGGCTAGCTATATTGGACTT
64 GCTGATTCAAGGCCAGCTATATTGGACTT
975572 AAAGG
1 AAAGG
975577 AAGATGCCAC
Statistics
Matches: 178, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
90 1 0.01
91 2 0.01
92 81 0.46
93 9 0.05
94 84 0.47
95 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (92 bp):
AAAGGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAAAGGTGTCAATATGC
TGATTCAAGGCCAGCTATATTGGACTT
Found at i:975701 original size:32 final size:32
Alignment explanation
Indices: 975581--975701 Score: 170
Period size: 32 Copynumber: 3.8 Consensus size: 32
975571 TAAAGGAAGA
* * *
975581 TGCCACCAACTTGTGTGAGCTTTTGAAGAAGGT
1 TGCCACCGACTTGTGTGAGCTTTGGAA-AGGGT
*
975614 TGCCACCGACTTGTGTGAGCTTTAGAAAGGGT
1 TGCCACCGACTTGTGTGAGCTTTGGAAAGGGT
* *
975646 TTCCACCGACTTGTGTGGGCTTTGGAAAGGGT
1 TGCCACCGACTTGTGTGAGCTTTGGAAAGGGT
*
975678 TGCCACCGACTTGTGTGGGCTTTG
1 TGCCACCGACTTGTGTGAGCTTTG
975702 AAGAATGGTG
Statistics
Matches: 81, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
32 56 0.69
33 25 0.31
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (32 bp):
TGCCACCGACTTGTGTGAGCTTTGGAAAGGGT
Found at i:975800 original size:36 final size:34
Alignment explanation
Indices: 975712--975936 Score: 193
Period size: 36 Copynumber: 6.8 Consensus size: 34
975702 AAGAATGGTG
* *
975712 AAAGATGCCACGAAGTTGTGGAC-TT-AAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAA
* *
975744 CAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTTAAAA-GGAA
* * *
975779 AAAGAGGGCCGCGGAGTTGTGGGCTTTGAAAA-G--
1 AAAG-GTGCCACGGAGTTGTGGACTTT-AAAAGGAA
**
975812 -AAGGTGCCACGGAGTCATGGAC-TTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAA
* *
975844 CAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTTAAAA-GGAA
* *
975879 AAAGAGTGCCATGGAGTTGTGGGCTTTGAAAA-G--
1 AAAG-GTGCCACGGAGTTGTGGACTTT-AAAAGGAA
*
975912 -AAGGTGCCACGGAGTCGTGGACTTT
1 AAAGGTGCCACGGAGTTGTGGACTTT
975937 GAAGAAAAAA
Statistics
Matches: 158, Mismatches: 22, Indels: 27
0.76 0.11 0.13
Matches are distributed among these distances:
29 4 0.03
30 3 0.02
31 33 0.21
32 27 0.17
33 21 0.13
34 9 0.06
35 16 0.10
36 37 0.23
37 8 0.05
ACGTcount: A:0.32, C:0.14, G:0.35, T:0.20
Consensus pattern (34 bp):
AAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAA
Found at i:975817 original size:67 final size:63
Alignment explanation
Indices: 975718--975874 Score: 161
Period size: 67 Copynumber: 2.4 Consensus size: 63
975708 GGTGAAAGAT
* * * **
975718 GCCACGAAGTTGTGGACTTAAAGGAACAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAAAG
1 GCCACGGAGTTGTGGACTTTAA--AAGAAGGTGCCACGAAGTCATGGAC-TTAAAA-GGAAAAAG
975783 AGG
62 -GG
* * * * *
975786 GCCGCGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCATGGACTTAAAAGGAACAAGGT
1 GCCACGGAGTTGTGGACTTT-AAAAGAAGGTGCCACGAAGTCATGGACTTAAAAGGAAAAAGGG
*
975850 GCCACGGGGTTGTGGACTTTAAAAG
1 GCCACGGAGTTGTGGACTTTAAAAG
975875 GGAAAAAGAG
Statistics
Matches: 75, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
63 5 0.07
64 18 0.24
65 7 0.09
66 6 0.08
67 21 0.28
68 16 0.21
69 2 0.03
ACGTcount: A:0.32, C:0.15, G:0.34, T:0.19
Consensus pattern (63 bp):
GCCACGGAGTTGTGGACTTTAAAAGAAGGTGCCACGAAGTCATGGACTTAAAAGGAAAAAGGG
Found at i:975847 original size:100 final size:99
Alignment explanation
Indices: 975730--975935 Score: 349
Period size: 100 Copynumber: 2.1 Consensus size: 99
975720 CACGAAGTTG
*
975730 TGGACTTAAAGGAACAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAAAGAGGGCCGCGGAG
1 TGGACTTAAAGGAACAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAAAGAGGGCCACGGAG
975795 TTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCA
66 TTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCA
** * *
975829 TGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCATGGA
1 TGGACTT-AAAGGAACAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAAAGAGGGCCACGGA
*
975894 GTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCG
65 GTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCA
975929 TGGACTT
1 TGGACTT
975936 TGAAGAAAAA
Statistics
Matches: 100, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
99 7 0.07
100 93 0.93
ACGTcount: A:0.31, C:0.14, G:0.35, T:0.20
Consensus pattern (99 bp):
TGGACTTAAAGGAACAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAAAGAGGGCCACGGAG
TTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCA
Found at i:975910 original size:30 final size:32
Alignment explanation
Indices: 975776--976003 Score: 136
Period size: 31 Copynumber: 7.2 Consensus size: 32
975766 CTTTAAAAGG
* * *
975776 GAAAAAG-AGG-GCCGCGGAGTTGTGGGCTTT
1 GAAAAAGAAGGTGCCACGGAGTCGTGGACTTT
*
975806 G-AAAAGAAGGTGCCACGGAGTCATGGAC-TT
1 GAAAAAGAAGGTGCCACGGAGTCGTGGACTTT
* * * *
975836 AAAAGGAACAAGGTGCCACGGGGTTGTGGACTTT
1 GAAA--AAGAAGGTGCCACGGAGTCGTGGACTTT
* * * * *
975870 AAAAGGGAAAAAGAGTGCCATGGAGTTGTGGGCTTT
1 GAAA---AAGAAG-GTGCCACGGAGTCGTGGACTTT
975906 G-AAAAGAAGGTGCCACGGAGTCGTGGACTTT
1 GAAAAAGAAGGTGCCACGGAGTCGTGGACTTT
* * * *
975937 GAAGAAA-AA-ATACCACTGAGTCATGGACTTT
1 GAA-AAAGAAGGTGCCACGGAGTCGTGGACTTT
* *
975968 GAGACAA-AA--TGCCACTGAGTCGTGGACTTT
1 GA-AAAAGAAGGTGCCACGGAGTCGTGGACTTT
975998 -AAAAAG
1 GAAAAAG
976004 GTATTTGAAG
Statistics
Matches: 160, Mismatches: 26, Indels: 25
0.76 0.12 0.12
Matches are distributed among these distances:
28 3 0.02
29 6 0.04
30 25 0.16
31 59 0.37
32 9 0.06
33 24 0.15
34 6 0.04
35 9 0.06
36 19 0.12
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.20
Consensus pattern (32 bp):
GAAAAAGAAGGTGCCACGGAGTCGTGGACTTT
Found at i:975958 original size:31 final size:30
Alignment explanation
Indices: 975918--975997 Score: 115
Period size: 30 Copynumber: 2.6 Consensus size: 30
975908 AAAGAAGGTG
*
975918 CCACGGAGTCGTGGACTTTGAAGAAAAAATA
1 CCACTGAGTCGTGGACTTTG-AGAAAAAATA
* * *
975949 CCACTGAGTCATGGACTTTGAGACAAAATG
1 CCACTGAGTCGTGGACTTTGAGAAAAAATA
975979 CCACTGAGTCGTGGACTTT
1 CCACTGAGTCGTGGACTTT
975998 AAAAAGGTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 26 0.59
31 18 0.41
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (30 bp):
CCACTGAGTCGTGGACTTTGAGAAAAAATA
Found at i:984362 original size:51 final size:52
Alignment explanation
Indices: 984223--984342 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
984213 GAAAATGTGT
984223 CTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCAAATTTGC
1 CTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCAAATTTGC
* *
984275 CTGCATGTATCGATACATTTTATAGTGTATCGATACATCT-GGCAAATTTTC
1 CTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCAAATTTGC
984326 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
984343 AAGATCAGTG
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
51 27 0.41
52 39 0.59
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCAAATTTGC
Found at i:984369 original size:13 final size:13
Alignment explanation
Indices: 984351--984409 Score: 67
Period size: 13 Copynumber: 4.9 Consensus size: 13
984341 CAAAGATCAG
984351 TGTATCGATACAA
1 TGTATCGATACAA
984364 TGTATCGATAC-A
1 TGTATCGATACAA
984376 T-T-T-GAGT--AA
1 TGTATCGA-TACAA
984385 TGTATCGATACAA
1 TGTATCGATACAA
984398 TGTATCGATACA
1 TGTATCGATACA
984410 TTTGAGTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
9 4 0.10
10 3 0.08
11 3 0.08
12 4 0.10
13 25 0.64
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:984394 original size:34 final size:34
Alignment explanation
Indices: 984351--984430 Score: 160
Period size: 34 Copynumber: 2.4 Consensus size: 34
984341 CAAAGATCAG
984351 TGTATCGATACAATGTATCGATACATTTGAGTAA
1 TGTATCGATACAATGTATCGATACATTTGAGTAA
984385 TGTATCGATACAATGTATCGATACATTTGAGTAA
1 TGTATCGATACAATGTATCGATACATTTGAGTAA
984419 TGTATCGATACA
1 TGTATCGATACA
984431 TTTTTTGGCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 46 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (34 bp):
TGTATCGATACAATGTATCGATACATTTGAGTAA
Found at i:984488 original size:32 final size:32
Alignment explanation
Indices: 984447--984514 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
984437 GGCAATAGCT
* *
984447 TACATTGTATTGATACAAAAATTATGTATCGA
1 TACATTGTATAGATACAAAAATTATGTATCAA
* *
984479 TACATTGTATAGATACAACACTTATGTATCAA
1 TACATTGTATAGATACAAAAATTATGTATCAA
984511 TACA
1 TACA
984515 AATCGTTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.35
Consensus pattern (32 bp):
TACATTGTATAGATACAAAAATTATGTATCAA
Found at i:989115 original size:17 final size:17
Alignment explanation
Indices: 989093--989130 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
989083 TTCCTTTTTA
989093 AAAAAAACAAAAAAAAG
1 AAAAAAACAAAAAAAAG
* *
989110 AAAAAAAGAAAAAAGAG
1 AAAAAAACAAAAAAAAG
989127 AAAA
1 AAAA
989131 GAAAAGAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.87, C:0.03, G:0.11, T:0.00
Consensus pattern (17 bp):
AAAAAAACAAAAAAAAG
Found at i:989122 original size:9 final size:9
Alignment explanation
Indices: 989092--989138 Score: 60
Period size: 9 Copynumber: 5.2 Consensus size: 9
989082 CTTCCTTTTT
*
989092 AAAAAAAAC
1 AAAAAAAAG
989101 AAAAAAAAG
1 AAAAAAAAG
989110 -AAAAAAAG
1 AAAAAAAAG
*
989118 AAAAAAGAG
1 AAAAAAAAG
989127 AAAAGAAAAG
1 AAAA-AAAAG
989137 AA
1 AA
989139 CCTGATTAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
8 8 0.24
9 19 0.58
10 6 0.18
ACGTcount: A:0.85, C:0.02, G:0.13, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:990214 original size:61 final size:61
Alignment explanation
Indices: 990106--990495 Score: 487
Period size: 61 Copynumber: 6.4 Consensus size: 61
990096 AACCTTTTAT
* * * * *
990106 CCTTTCAGTCCTTAAAGAGCAGGATACTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * *
990167 CATTTTAGTCTTCAAAGAGCAAGACGTCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* **
990228 CC-TTCTAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGTG
1 CCTTTC-AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
990289 CCTTTCAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGTA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * ** * **
990350 ACTTTCAATCCTTTAAGAGCAGGATGCCTTCTCCTTTCGAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
990411 CCTTTCAGTTCTCAAAGAGAATGATGCCTTTTCCTTTTAGAAGCCTACACAAGCTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTA-AAGCCCACACAAGTTGGTGGCA
990473 CC-TTCTAGTCCTCAAAGAGCAGG
1 CCTTTC-AGTCCTCAAAGAGCAGG
990496 GCCCCTTTCT
Statistics
Matches: 278, Mismatches: 47, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
60 2 0.01
61 237 0.85
62 39 0.14
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (61 bp):
CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:993580 original size:79 final size:76
Alignment explanation
Indices: 993448--994051 Score: 482
Period size: 79 Copynumber: 7.6 Consensus size: 76
993438 TCATTCATGT
* * * *
993448 TTTTA-TTTCTAAAATACCGATTTTTCACCATCGGAGATTCTCCAACCCCGTTATTTTTGAGAGG
1 TTTTATTTTC-AAAACA-CGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGAG-GG
*
993512 ATACTCTAACCTTGA
63 ATACTCCAACCTT-A
* * * * *
993527 TTTTATTTTCAAAAGATCGA-TTTTCAACCATTGGGGATACTTCAACCCTGTTATTTTTGAGGGA
1 TTTTATTTTCAAAACA-CGATTTTTC-ACAATCGGGGATACTCCAACCCCGTTATTTTTGAGGG-
*
993591 ATACTCTAACCTTAA
63 ATACTCCAACCTT-A
*
993606 TTTTA-TTTCTAAAACACCGATTTTTCACAATCGGGGATACTCCAACCCCATTATTTTTGAGGAG
1 TTTTATTTTC-AAAACA-CGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGAGG-G
* **
993670 ATACTCCAGCCCTGG
63 ATACTCCA-ACCTTA
* * * *
993685 TTTTATTTTTAAAACACTGATTTTTCACAATCAGGGATACTCCAACCTCGTTATTTTTTAGGGGA
1 TTTTATTTTCAAAACAC-GATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGA-GGGA
*
993750 TACTCCAACCCTA
64 TACTCCAACCTTA
* * * * * *
993763 GCTTTATTTCCAAAATACTGAATTTTCATAATCGGGGATACTCCAACTCCGTTATTTTTGAGGGG
1 -TTTTATTTTCAAAACAC-GATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGA-GGG
*
993828 ATACTCCAATCTTA
63 ATACTCCAACCTTA
* * * *
993842 GTTTTATTTCCAAAACACCGATTTTTCACCATCGGGGATATTCCAACCCCGTTATTTTCGAGGGG
1 -TTTTATTTTCAAAACA-CGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGA-GGG
* *
993907 ACACTCCAACTCCGGT-
63 ATACTCCAA--CC-TTA
* * * * * * * * *
993923 TTTTA-TTTCTAAAACATCAACTTTTCATAATCGAGGACACTCCAATCCTGTTATTTTCGAGAGA
1 TTTTATTTTC-AAAACA-CGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGAG-GG
* **
993987 ATGCTCCAACCCCGA
63 ATACTCCAA-CCTTA
* *
994002 CTTTA-TTTCTAAAACATCGATTTTACACAATCGGGGATACTCCAACCCCG
1 TTTTATTTTC-AAAACA-CGATTTTTCACAATCGGGGATACTCCAACCCCG
994052 ACTTTATTTC
Statistics
Matches: 430, Mismatches: 77, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
78 14 0.03
79 342 0.80
80 72 0.17
81 1 0.00
82 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.35
Consensus pattern (76 bp):
TTTTATTTTCAAAACACGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGAGGGATA
CTCCAACCTTA
Found at i:993738 original size:158 final size:156
Alignment explanation
Indices: 993448--994049 Score: 598
Period size: 158 Copynumber: 3.8 Consensus size: 156
993438 TCATTCATGT
* * * *
993448 TTTTATTTCTAAAATACCGATTTTTCACCATCGGAGATTCTCCAACCCCGTTATTTTTGAGAGGA
1 TTTTATTTCTAAAACACCGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGAGA-GA
* * * * * * *
993513 TACTCTAACCTTGATTTTATTTTCAAAAGATCGA-TTTTCAACCATTGGGGATACTTCAACCCTG
65 TACTCCAACCCTGATTTTATTTCCAAAACATCGATTTTTC-ACAATCGGGGATACTCCAACCC-G
* * *
993577 TTATTTTTGAGGGAATACTCTAACCTTAA
128 TTATTTTTGAGGGGATACTCCAACCCTAA
*
993606 TTTTATTTCTAAAACACCGATTTTTCACAATCGGGGATACTCCAACCCCATTATTTTTGAGGAGA
1 TTTTATTTCTAAAACACCGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGA-GAGA
* * ** *
993671 TACTCCAGCCCTGGTTTTATTTTTAAAACA-CTGATTTTTCACAATCAGGGATACTCCAACCTCG
65 TACTCCAACCCTGATTTTATTTCCAAAACATC-GATTTTTCACAATCGGGGATACTCCAACC-CG
* *
993735 TTATTTTTTAGGGGATACTCCAACCCTAG
128 TTATTTTTGAGGGGATACTCCAACCCTAA
* * * * * * * *
993764 CTTTATTTCCAAAATACTGAATTTTCATAATCGGGGATACTCCAACTCCGTTATTTTTGAGGGGA
1 TTTTATTTCTAAAACACCGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGA-GAGA
* * * * *
993829 TACTCCAA-TCTTAGTTTTATTTCCAAAACACCGATTTTTCACCATCGGGGATATTCCAACCCCG
65 TACTCCAACCCTGA-TTTTATTTCCAAAACATCGATTTTTCACAATCGGGGATACTCCAA-CCCG
* * ***
993893 TTATTTTCGAGGGGACACTCCAACTCCGGT
128 TTATTTTTGAGGGGATACTCCAAC-CCTAA
* * * * * * * * *
993923 TTTTATTTCTAAAACATCAACTTTTCATAATCGAGGACACTCCAATCCTGTTATTTTCGAGAGAA
1 TTTTATTTCTAAAACACCGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGAGAG-A
* * * * *
993988 TGCTCCAACCCCGACTTTATTTCTAAAACATCGATTTTACACAATCGGGGATACTCCAACCC
65 TACTCCAACCCTGATTTTATTTCCAAAACATCGATTTTTCACAATCGGGGATACTCCAACCC
994050 CGACTTTATT
Statistics
Matches: 366, Mismatches: 68, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.01
158 254 0.69
159 107 0.29
160 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (156 bp):
TTTTATTTCTAAAACACCGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGAGAGAT
ACTCCAACCCTGATTTTATTTCCAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCGTTA
TTTTTGAGGGGATACTCCAACCCTAA
Found at i:993863 original size:237 final size:236
Alignment explanation
Indices: 993446--994049 Score: 686
Period size: 237 Copynumber: 2.5 Consensus size: 236
993436 TTTCATTCAT
* * * * *
993446 GTTTTTATTTCTAAAATACCGATTTTTCACCATCGGAGATTCTCCAACCCCGTTATTTTTGAGAG
1 GTTTTTATTTCTAAAACACTGATTTTTCACAATCGG-GATACTCCAACCTCGTTATTTTTGAGAG
* * * * * * *
993511 GATACTCTAA-CCTTGATTTTATTTTCAAAAGATCGATTTTCAACCATTGGGGATACTTCAACCC
65 GATACTCCAACCCTAGACTTTATTTCCAAAACATCGATTTTCAA--ATCGGGGATACTCCAACCC
* *
993575 TGTTATTTTTGAGGGAATACTCTAACCTTAATTTTATTTCTAAAACACCGATTTTTCACAATCGG
128 TGTTATTTTTGAGGGAATACTCCAACCTTAATTTTATTTCCAAAACACCGATTTTTCACAATCGG
* * *
993640 GGATACTCCAACCCCATTATTTTTGAGGAGATACTCCAGC-CCTG
193 GGATACTCCAACCCCATTATTTTCGAGGAGACACTCCAACTCC-G
* * *
993684 G-TTTTATTTTTAAAACACTGATTTTTCACAATCAGGGATACTCCAACCTCGTTATTTTTTAGGG
1 GTTTTTATTTCTAAAACACTGATTTTTCACAATC-GGGATACTCCAACCTCGTTATTTTTGAGAG
*
993748 GATACTCCAACCCTAG-CTTTATTTCCAAAATA-CTGAATTTTCATAATCGGGGATACTCCAACT
65 GATACTCCAACCCTAGACTTTATTTCCAAAACATC-G-ATTTTCA-AATCGGGGATACTCCAAC-
* * * *
993811 CC-GTTATTTTTGAGGGGATACTCCAATCTTAGTTTTATTTCCAAAACACCGATTTTTCACCATC
126 CCTGTTATTTTTGAGGGAATACTCCAACCTTAATTTTATTTCCAAAACACCGATTTTTCACAATC
* * *
993875 GGGGATATTCCAACCCCGTTATTTTCGAGGGGACACTCCAACTCCG
191 GGGGATACTCCAACCCCATTATTTTCGAGGAGACACTCCAACTCCG
* * * * *
993921 GTTTTTATTTCTAAAACA-TCAACTTTTCATAATCGAGGACACTCCAATCCT-GTTATTTTCGAG
1 GTTTTTATTTCTAAAACACT-GATTTTTCACAATCG-GGATACTCCAA-CCTCGTTATTTTTGAG
* * * *
993984 AGAATGCTCCAACCC-CGACTTTATTTCTAAAACATCGATTTTACACAATCGGGGATACTCCAAC
63 AGGATACTCCAACCCTAGACTTTATTTCCAAAACATCGATTTT-CA-AATCGGGGATACTCCAAC
994048 CC
126 CC
994050 CGACTTTATT
Statistics
Matches: 311, Mismatches: 41, Indels: 29
0.82 0.11 0.08
Matches are distributed among these distances:
236 1 0.00
237 194 0.62
238 111 0.36
239 5 0.02
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (236 bp):
GTTTTTATTTCTAAAACACTGATTTTTCACAATCGGGATACTCCAACCTCGTTATTTTTGAGAGG
ATACTCCAACCCTAGACTTTATTTCCAAAACATCGATTTTCAAATCGGGGATACTCCAACCCTGT
TATTTTTGAGGGAATACTCCAACCTTAATTTTATTTCCAAAACACCGATTTTTCACAATCGGGGA
TACTCCAACCCCATTATTTTCGAGGAGACACTCCAACTCCG
Found at i:994050 original size:51 final size:51
Alignment explanation
Indices: 993990--994101 Score: 224
Period size: 51 Copynumber: 2.2 Consensus size: 51
993980 CGAGAGAATG
993990 CTCCAACCCCGACTTTATTTCTAAAACATCGATTTTACACAATCGGGGATA
1 CTCCAACCCCGACTTTATTTCTAAAACATCGATTTTACACAATCGGGGATA
994041 CTCCAACCCCGACTTTATTTCTAAAACATCGATTTTACACAATCGGGGATA
1 CTCCAACCCCGACTTTATTTCTAAAACATCGATTTTACACAATCGGGGATA
994092 CTCCAACCCC
1 CTCCAACCCC
994102 ATTATTTTTG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.30, C:0.31, G:0.11, T:0.28
Consensus pattern (51 bp):
CTCCAACCCCGACTTTATTTCTAAAACATCGATTTTACACAATCGGGGATA
Found at i:994085 original size:130 final size:130
Alignment explanation
Indices: 993924--994168 Score: 305
Period size: 130 Copynumber: 1.9 Consensus size: 130
993914 AACTCCGGTT
* * **
993924 TTTATTTCTAAAACATCAACTTTTCATAATCGAGGACACTCCAATCCTGTTATTTTCGAGAGAAT
1 TTTATTTCTAAAACATCAACTTTTCACAATCGAGGACACTCCAACCCCATTATTTTCGAGAGAAT
* *
993989 GCTCCAACCCCGA-CTTTATTTCTAAAACATCGATTTTACACAATCGGGGATACTCCAACCCCGA
66 ACTCCAA-CCCGAGCTTTATTTCCAAAACATCGATTTTACACAATCGGGGATACTCCAACCCCGA
994053 C
130 C
* * * * * *
994054 TTTATTTCTAAAACATCGA-TTTTACACAATCGGGGATACTCCAACCCCATTATTTTTGAGGGCA
1 TTTATTTCTAAAACATCAACTTTT-CACAATCGAGGACACTCCAACCCCATTATTTTCGAGAGAA
* * * * *
994118 TACTCCAATCCTAGTTTTATTTCCAAAACATCGATTTTCCACCATCGGGGA
65 TACTCCAACCCGAGCTTTATTTCCAAAACATCGATTTTACACAATCGGGGA
994169 ATGTACTCCA
Statistics
Matches: 96, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
129 7 0.07
130 89 0.93
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (130 bp):
TTTATTTCTAAAACATCAACTTTTCACAATCGAGGACACTCCAACCCCATTATTTTCGAGAGAAT
ACTCCAACCCGAGCTTTATTTCCAAAACATCGATTTTACACAATCGGGGATACTCCAACCCCGAC
Found at i:995763 original size:12 final size:12
Alignment explanation
Indices: 995746--995773 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
995736 TCTCCAATTA
995746 ATTTATATAATG
1 ATTTATATAATG
995758 ATTTATATAATG
1 ATTTATATAATG
995770 ATTT
1 ATTT
995774 TTTAAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (12 bp):
ATTTATATAATG
Found at i:1001461 original size:118 final size:118
Alignment explanation
Indices: 1001248--1001543 Score: 378
Period size: 118 Copynumber: 2.5 Consensus size: 118
1001238 GGACCAATAC
* * ** * * *
1001248 ATTGGTGCCTAAGCACTATGTGATTTATGTGAAAATAAATTTTCCTATACAAAACGCATTCATAC
1 ATTGGTGCCTAAGTACTACGTGATTTATGAAAAAATGAATTCTCCTATACAAAAGGCATTCATAC
* * **
1001313 ACCTTGGTTGTGACTTTAAATGGATGACTGATAACCTATCCCGAGG-CTAATCT
66 ACCTTCGTTGGGACTTTAAATGGACAACTGATAACCTATCCC-AGGTCTAATCT
* * *
1001366 ATTGGTGCCTGAGTACTACGTTATTTATGAAAAAACGAATTCTCCTATACAAAAGGCATTCATAC
1 ATTGGTGCCTAAGTACTACGTGATTTATGAAAAAATGAATTCTCCTATACAAAAGGCATTCATAC
* * *
1001431 ACCTTCTTTGGGACTTTAAATGGACAACTGATAACTTATCCCAGGTCTAATTT
66 ACCTTCGTTGGGACTTTAAATGGACAACTGATAACCTATCCCAGGTCTAATCT
* * * * *
1001484 ATTGGTGCCCAAGTATTGCATGATTTATGAAAAAATGAATTCTTCTATACAAAAGGCATT
1 ATTGGTGCCTAAGTACTACGTGATTTATGAAAAAATGAATTCTCCTATACAAAAGGCATT
1001544 TGTCTACTAC
Statistics
Matches: 152, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
117 3 0.02
118 149 0.98
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (118 bp):
ATTGGTGCCTAAGTACTACGTGATTTATGAAAAAATGAATTCTCCTATACAAAAGGCATTCATAC
ACCTTCGTTGGGACTTTAAATGGACAACTGATAACCTATCCCAGGTCTAATCT
Found at i:1002422 original size:11 final size:11
Alignment explanation
Indices: 1002408--1002442 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
1002398 TTTCTACTTT
1002408 TTTCTTTTTTC
1 TTTCTTTTTTC
1002419 TTTCTTTTTTC
1 TTTCTTTTTTC
*
1002430 TTTCTTTTCTC
1 TTTCTTTTTTC
1002441 TT
1 TT
1002443 CTCTCTCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTCTTTTTTC
Found at i:1002442 original size:18 final size:17
Alignment explanation
Indices: 1002396--1002442 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
1002386 TAGGCCATCC
1002396 TTTTTCTACTTTTTTCTT
1 TTTTTCT-CTTTTTTCTT
*
1002414 TTTTCTTTCTTTTTTCTT
1 TTTT-TCTCTTTTTTCTT
1002432 TCTTTTCTCTT
1 T-TTTTCTCTT
1002443 CTCTCTCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 20 0.80
19 5 0.20
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTCTCTTTTTTCTT
Found at i:1003537 original size:28 final size:28
Alignment explanation
Indices: 1003478--1003561 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
1003468 GCAAGCTAAC
*** *
1003478 GTGGGCTTTGACTTAGGTATTAGCTAAG-
1 GTGGGCTTTGACTTAGGTGCCAACT-AGT
1003506 GTGGGCTTTGACTTAGGTGCCAACTAGT
1 GTGGGCTTTGACTTAGGTGCCAACTAGT
* *
1003534 GTGGACTTTGACTTAGGTGCCTACTAGT
1 GTGGGCTTTGACTTAGGTGCCAACTAGT
1003562 ATGAGCTTAG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
27 2 0.04
28 47 0.96
ACGTcount: A:0.19, C:0.15, G:0.31, T:0.35
Consensus pattern (28 bp):
GTGGGCTTTGACTTAGGTGCCAACTAGT
Found at i:1003574 original size:28 final size:27
Alignment explanation
Indices: 1003509--1003574 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 27
1003499 AGCTAAGGTG
*
1003509 GGCTTTGACTTAGGTGCCAACTAGTGT
1 GGCTTTGACTTAGGTGCCAACTAGTAT
*
1003536 GGACTTTGACTTAGGTGCCTACTAGTAT
1 GG-CTTTGACTTAGGTGCCAACTAGTAT
*
1003564 GAGCTTAGACT
1 G-GCTTTGACT
1003575 CTATAGGACT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 2 0.06
28 31 0.91
29 1 0.03
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.33
Consensus pattern (27 bp):
GGCTTTGACTTAGGTGCCAACTAGTAT
Found at i:1003750 original size:28 final size:28
Alignment explanation
Indices: 1003654--1003769 Score: 103
Period size: 28 Copynumber: 4.2 Consensus size: 28
1003644 GCATACTCAA
*
1003654 GTGCCAGTTAATGTAGGCTTTGACTTAG
1 GTGCCAGCTAATGTAGGCTTTGACTTAG
* * * * **
1003682 ATACCAGCTAATATGGGCTTCAACTT-G
1 GTGCCAGCTAATGTAGGCTTTGACTTAG
* * * *
1003709 TATGCCAACTAATGTGGGCTTTGACTAAG
1 -GTGCCAGCTAATGTAGGCTTTGACTTAG
1003738 GTGCCAGCTAATGTAGGC-TT-ACTTAG
1 GTGCCAGCTAATGTAGGCTTTGACTTAG
1003764 GTGCCA
1 GTGCCA
1003770 ATTACTATAG
Statistics
Matches: 69, Mismatches: 17, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
26 11 0.16
27 3 0.04
28 54 0.78
29 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (28 bp):
GTGCCAGCTAATGTAGGCTTTGACTTAG
Done.