Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold682
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56334
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Found at i:372 original size:158 final size:157
Alignment explanation
Indices: 3--360 Score: 447
Period size: 158 Copynumber: 2.3 Consensus size: 157
1 AG
* * * * *
3 TCATATTAATCCCCATTC-TCTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATACAT
1 TCATAATAATCCCCATTCATTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAT
* * *
67 GATATTGACGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTC
66 GATATTGACGCTTTGGTTTCGGAAAAAAAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTC
* *
132 CTCTTTTAAATAAGACAAACATGAATA
131 CTCTCTCAAATAAGACAAACATGAATA
* *
159 GTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
1 -TCATAATAATCCCCATTCATTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
*
224 TGATATTGACGCTTTGGTTTCGGAAAAAAAGCTTTCTTCCCACCAATTTTTATAATGTGTAAGTT
65 TGATATTGACGCTTTGGTTTCGGAAAAAAAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTT
* * *
289 CGGTGC-CTCAAATGAGAC-AACATGGAT-
130 C-CT-CTCTCAAATAAGACAAACATGAATA
* ** *
316 TCTAGTAATGATCTTCATTCATTTT-GTGATTAGGCACTATAAACA
1 TC-A-TAATAATCCCCATTCATTTTAG-GATTAGGCACCATAAACA
361 CATTCTCCTC
Statistics
Matches: 175, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
156 2 0.01
157 19 0.11
158 143 0.82
159 10 0.06
160 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (157 bp):
TCATAATAATCCCCATTCATTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAT
GATATTGACGCTTTGGTTTCGGAAAAAAAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTC
CTCTCTCAAATAAGACAAACATGAATA
Found at i:1427 original size:475 final size:474
Alignment explanation
Indices: 140--7577 Score: 6227
Period size: 475 Copynumber: 15.6 Consensus size: 474
130 TCCTCTTTTA
*
140 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATA
1 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * *
205 GTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCGGAAAAAAAGCTTTCTTCCCACCAA
66 GTCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCAA
*
270 TTTTTATAATGTGTAAGTTCGGTGCCTCAAATGAGAC-AACATGGATTCTAGTAATGATCTTCAT
130 TTTTTATAATGTCTAAGTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
*
334 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAAGGATATTGATGATTTTC
194 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTC
* * * * * * * *
399 TTTTGCTTATTGAAGTGTGT-CATTGCCAC-ATTTGTCCTTAATATCAAAGTTCATCTCTCAAAT
259 TTTTGC--ATGGAAATGTTTCCTTTGCC-CTATTT-TCCTTAAAATCATAGTTCATCCCTTAAAT
* ** * *
462 AAGGCAAGCATTGATTCTCGAAACAATCTCCATTCTTTTTGTGACTTGCAACCAAGAACACATTC
320 AAGGCAAGCATTGATTCTCGAAACAGTCTCCATTCTTTTCATGAC-TGGAACCAAAAACACATTC
* * * *
527 CTTTCATTAGGATACTTGACATTAATGCTTTGGTGTCACAAGAAAAGCTTTTTCTTTCAACCG-T
384 CCTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGC-TTTTCTTTCAACCGTT
*
591 TTTGATAGAATTAAAGTTTGTCT-CTT
448 TTTGATAGAATCAAAGTTTGTCTCCTT
** *
617 AAATAAGACAAACAACAATAGTCACACTAAT-CCCATT-TTTTCCAGGATTAGGCACCATAAACA
1 -AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT-CAGGATTAGGCACCATAAACA
* * * * * * * * *
680 GA-T-TATC-ATAAGGATTCACGGTATAGAAGCTTTAGGTTTC-CAAGAAAGGCTTTCTTTCTAC
64 TAGTCT-TCTATAAGGATACACGATATTGACGCTTT-GGTTTCGGAAGAAACGCTTTCTTCCCAC
* * ** *
741 CAATTTTTATAATGTCTAAGTTTGTGCCTCAAATGTGACAAAACAAAGATTATAGTAATGATCTT
127 CAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGAC-AAACATGGATTCTAGTAATGATCTT
* * *
806 CATTCATTTTGTGACTAGGCACAATAAACACATTCTCCTCATGAGGGTAAATGATATTGATGATT
191 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATT
* *
871 TT-TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAA
256 TTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATA
*
935 AGGCAAGCATTGATTCTCGAACCAGTCTCCATTCTTTTCATGACTGAGAACCAAAAACACATTCC
321 AGGCAAGCATTGATTCTCGAAACAGTCTCCATTCTTTTCATGACTG-GAACCAAAAACACATTCC
* * * * * * *
1000 TTTTATTAGGATACTTCACATTGACACTTTGGAGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTT
385 CTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTT
* **
1065 TGATAGAATC-AAGTTTGTATCCCC
450 TGATAGAATCAAAGTTTGTCTCCTT
* * * * * *
1089 AATAAAACAAACGTGAACAGTCATACTAATCCCCTTTTCTTTTCAAGATTAGGCGCCATAAACAT
1 AATAAGACAAACATGAATAGTCATACTAATCCCC-ATTCTTTTCAGGATTAGGCACCATAAACAT
* * * *
1154 TGTCTTCCTATAAGGATACACGATATTGACGCTTTGGTTTCGTAGGGAACGCTTTCTTCCCACCA
65 AGTCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCA
* *
1219 ATTTTTATCATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAA-GATCTTCAT
129 ATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* *
1283 TCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGGTAAATGATATTGATGATTTTG
194 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTC
* * ** *
1348 TTTTGGATGGAAATGTTTCCTTTGCCTTATTTTCCAAAAAATCATTGTTCATCCCTTAAATAAGG
259 TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATAAGG
* * *
1413 CAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGCTTGGAACCAAAAACACATTCCCTT
324 CAAGCATTGATTCTCGAAACAGTCTCCATTCTTTTCATGAC-TGGAACCAAAAACACATTCCCTT
* * * *
1478 CATTAGGATACATGACATCGATGCTTTGGTGTCGCAAGAAAAGC-TTTCTTTCAACCATTTTTGA
388 CATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGA
*
1542 TAGAATCAAAGTTTGTCTCTTT
453 TAGAATCAAAGTTTGTCTCCTT
* * *
1564 AATAAGACAAATATGAATAGTCTTACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATA
1 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * *
1629 GTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGGAAGAAAGGCTTTCTTCGCACCAA
66 GTCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCAA
* * * * * * **
1694 TTTTTTTAATGTCTAATTTCGTGCCTCGAGTGAGACAAACATGAATTGTAGTAACAATCTTCATT
130 TTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* *
1759 CATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGGTAAACGATATTGATTATTTTCT
195 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* * * *
1823 TTTACATGGAAATGTTTCCTTTGCCCTATTTTCCTCAAAATCGTAGTTCATTTCC-TAAATAAGG
260 TTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCA-TCCCTTAAATAAGG
* * * *
1887 CAAGCTTTGATTCTC-ATAACAGTCTCCATTCTTTTCATGATTGCGAACTAAAAGCACATTCCCT
324 CAAGCATTGATTCTCGA-AACAGTCTCCATTCTTTTCATGACTG-GAACCAAAAACACATTCCCT
* * *
1951 TCATAAGGATACATGACATTGACGCTTTGGTGTCATAAGAAAAGTTTTTCTTTCAACCGTTTTTG
387 TCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTG
2016 ATAGAATCAAAGTTTGTCTCCTT
452 ATAGAATCAAAGTTTGTCTCCTT
*
2039 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATT
1 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * *
2104 GTCTTCCCATAAGGATACACGATATTGACGATTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAA
66 GTCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCAA
* * *
2169 TTTTTATAATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGA-TCTAGTAAAGATCTTTATT
130 TTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* *
2233 CATTTTGTGATTAGGCACTACAAACGCATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
195 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* * * * *
2298 TTTGCATGAAAATGTTTCCTTTGCCTTATTTTCCATAAAGTCATTGTTCATCCCTTAAATAAGGC
260 TTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATAAGGC
* * **
2363 AAGCGTTGATCCTC-ATAACAGTCTCCATTCTTTTCATGGTTTGGAACCAAAAACACATTCCCTT
325 AAGCATTGATTCTCGA-AACAGTCTCCATTCTTTTCAT-GACTGGAACCAAAAACACATTCCCTT
* * * ** *** **
2427 CTGTTAGG----AT--C-TTG--G-TTT--TGAT-ATAA-CAAAGGATTGAATAAAACCGGAAAT
388 C-ATTAGGATACATGACATTGACGCTTTGGTG-TCACAAGAAAAGCTTTTCTTTCAACC-G----
* * * **
2478 TATTTTGA-A-AATAACAAAAATGTGTTTTATT
446 T-TTTTGATAGAAT--C-AAAGTTTGTCTCCTT
* * ** * * * *
2509 CAATTAAGTACTTTATAA-ATTTTGTACCA-AATGATTTTTGATTCACCAAATGTTTTCTA-G-T
1 -AA-TAAG-AC---A-AACA---TG-A--ATAGTCA-TACT-AATC-CCCATTCTTTTC-AGGAT
** * * * ** * * *** *
2570 TA---AGTAT-AA-AT-GT-TT-T-CAAGGCTTA-A-AATGATTGA-TTTTTAAG-ATAAAATAT
49 TAGGCACCATAAACATAGTCTTCTATAAGG-ATACACGAT-ATTGACGCTTT-GGTTTCGGA-AG
* * * ** *** * * * * *
2622 ATCAAAG-TATTGATACATAGGTATTTGTATCGAT-ACATTAAGGTTGACTTAGGCT-AAATTGT
110 A--AACGCT-TT-CTTCCCACCAATTTTTAT-AATGTC--TAA-GTT--CGT-GCCTCAAA-TG-
* * * * * * * * * * ** **
2684 CAAAACCCTTAAAAGTATCGATACACAATTCAAAGTATC--AATACATGTTGCAATGTATCGATA
162 --AGA--C---AAA-CATGGAT--TCTAGT-AATG-ATCTTCATTCATTTTGTGAT-TA--GGCA
* * * * *** * * * * **
2747 C-ATGAAA-AAATGTATCGATACATGA-AAAAAATG-TATCGAT-ACATGTC-ATTG---GGATT
212 CTAT-AAACACAT-TCTC-CT-CATTAGGGTAAATGATATTGATGA-TTTTCTTTTGCATGGAAA
* * ** * ** ** * ** **** *
2803 TCTTGGCAGTAGCCAAACTTGTATCGATAGACAA-GA-AG-AGA-GAAGTAGAACCAA-GCAAGA
272 TGTT-TCCTTTGCCCTA-TT-T-TCCTTA-A-AATCATAGTTCATCCCTTA-AA-TAAGGCAAG-
** * ** * * ** * *****
2863 AACATCTAGCATTCAAAGATCAA-AGTGTTTTATAT-TTTTCAAGAGCTTTTG-TTCATATTGTT
328 --CAT-T-G-ATTC-TCGA--AACAGT-CTCCAT-TCTTTTCATGA-C--TGGAACCAAAAACAC
*** ** ** * ***
2925 ATTATTTTTCTAAGCTCTTTG-TATTTGA-TTTCGA-GCTTAAAT-TCCCACAA-ACACAAGCCT
380 ATT-CCCTTC--A--T-TAGGATACATGACATT-GACGCTTTGGTGT--CACAAGA-A-AAG-CT
***** * * * * *
2985 AGTTAGAGGCAAACTTTGTTTG-TAGAA--AAATCTTTGT-TGTCAT
433 --TTTCTTTCAACCGTT-TTTGATAGAATCAAA-GTTTGTCT-CCTT
** ** * * * * **** * * * *
3028 AAGGTTGTGGTAAACCTTGAGAGAG-AAT-CT-CTTTGGA-ACTTGT--GG-TATAGTTC-GCA-
1 AA---TAAGACAAA-CATGA-ATAGTCATACTAATCCCCATTCTTTTCAGGAT-TAG-GCACCAT
* * * * * * ** ** *
3084 AAGAGATTGTACGGTTGGTATCTAAGCCCG-TAAAAGATA-CGA-G--TT-G-TAAGG-TTATAC
59 AA-ACATAGT-C--TT-CTA--TAAG---GATACACGATATTGACGCTTTGGTTTCGGAAGAAAC
** * * * * ** * *
3141 -CTTTGCCTT---A--AA-GGTAATCAAT-TC--GGTTAGTG----AATTG-GGTAATCACTCGA
114 GCTTT--CTTCCCACCAATTTTTAT-AATGTCTAAGTTCGTGCCTCAAATGAGACAAACA-TGGA
* * * ** **** * * **** ** *
3191 --CAAGGAAGTG-TC--GA-GGAGAGAG-GACGTAGGTGC-CGTGTTTGGAC-CGCACCTC--TA
175 TTCTAGTAA-TGATCTTCATTCATTTTGTGA-TTA-G-GCAC-TATAAACACATTCTCCTCATTA
* * * * * * * * *** * *
3245 ---AAAAT-ATCTTG-TGTCAAGTTTTC-CTTCCCT--AATCTCTTTTCATTTCGAATTGTTTTG
235 GGGTAAATGATATTGATG---A-TTTTCTTTTGCATGGAA-AT-GTTTCCTTT-GCCCTATTTTC
* * * * * ** ** * * * * **
3302 TTTCAAA-CTTA-TACAAAACCCGAAAAT-TTG-AA--A-AGA-AC-C-AATTCA--CCCCCCTC
293 CTTAAAATCATAGTTC--ATCCCTTAAATAAGGCAAGCATTGATTCTCGAA-ACAGTCTCCATTC
* * * * * * * *
3355 TTGGTTCATTACT----TC-ATAA-GCTTTCACCTTCATTAGGATACATGACACTGAGGCTTTAG
355 TT--TTCATGACTGGAACCAAAAACACATTC-CCTTCATTAGGATACATGACATTGACGCTTTGG
* *
3414 TGTCACAAGAAAAGCTTTTCTTTGAACCGTTTTTGATGGAATCAAAGTTTGTCT-CTCT
417 TGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCT-T
* * *
3472 AATAAGACAAA-AGTGAATAGTCTTACCAATCCCCATTCTTTTCAAGATTAGGCACCATAAACAT
1 AATAAGACAAACA-TGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * *
3536 AGTC-TC-ATAAGGATTCACGATTTTGACGCTTTGGGTTCGCAAGAAAGGCTTTCTTCTCACCAA
65 AGTCTTCTATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCAA
* * *
3599 TTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAAAGATCTTCATT
130 TTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* *
3664 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGGTAAATGATATTGATGATTTTCA
195 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* *
3729 TTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGGC
260 TTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATAAGGC
* * *
3794 AAGCATTGATTCTCGAACCAGTCTCCATTCTTTTTATGACTGAGAACCAAAAACACATTCCCTTT
325 AAGCATTGATTCTCGAAACAGTCTCCATTCTTTTCATGACTG-GAACCAAAAACACATTCCCTTC
* * ** * * * *
3859 ATTAGGATACTTCACATTGATACTTTGGAGTCGCAAGAAAAGCTTTTCTTTCAACCATTTCTGAT
389 ATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGAT
3924 AGAATCAAAGTTTGTCTCCTT
454 AGAATCAAAGTTTGTCTCCTT
** * *
3945 AATAA-AGCAAACATGAATAGTCATACTAATCCGCTTTTCTTTTCAAGATTAGGCGCCATAAACA
1 AATAAGA-CAAACATGAATAGTCATACTAATCC-CCATTCTTTTCAGGATTAGGCACCATAAACA
* * * * * * *
4009 TTGTCTTCCTATAAGGATACACGATATTGATGCTTTAGTTTCGTAGGGAATGCTTTCTTCCCACC
64 TAGTCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACC
* * * *
4074 AATTTTTATCATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTA
128 AATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* *
4139 TTCATTTTGTGATTAGGCACTACAAACGCATTCTCCTCATTAGGGTAAATGATATTGATGATTTT
193 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTT
* * * *
4204 CTTTTGCATGAAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATTGTTCATCCCTTAAATAAG
258 CTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATAAG
* **
4269 GCAAGCGTTGATTCTC-ATAACAGTCTCCATTCTTTTCATGGTTTGGAACCAAAAACACATTCCC
323 GCAAGCATTGATTCTCGA-AACAGTCTCCATTCTTTTCAT-GACTGGAACCAAAAACACATTCCC
** * * * *
4333 TTCATTAGGATACATGACCCTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTGAACCGTTTTT
386 TTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTT
*
4398 GATGGAATCAAAGTTTGTCT-CTCT
451 GATAGAATCAAAGTTTGTCTCCT-T
* * *
4422 AATAAGATAAA-AGTGAATAGTCTTACCAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
1 AATAAGACAAACA-TGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * * **
4486 AGTC-TC-ATATGGATTCACGATTTTGACGCTTTGGGTTCGCAAGAAAGGCTTTCTTGTCACCAA
65 AGTCTTCTATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCAA
* * *
4549 TTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAAAGATCTTCATT
130 TTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* *
4614 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGGTAAATGATATTGATGATTTTCA
195 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* *
4679 TTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGGC
260 TTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATAAGGC
* *
4744 AAGCATTGATTCTCGAACCAGTCTCCATTCTTTTCATGACTGAGAACCAAAAACACATTCCCTTT
325 AAGCATTGATTCTCGAAACAGTCTCCATTCTTTTCATGACTG-GAACCAAAAACACATTCCCTTC
** * * *
4809 ATTAGGATAC-TGCACATTGATACTTTGGAGTCGCAAGAAAACCTTTTCTTTCAACCGTTTTTGA
389 ATTAGGATACATG-ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGA
4873 TAGAATCAAAGTTTGTCTCCTT
453 TAGAATCAAAGTTTGTCTCCTT
* * * * *
4895 AATAAAACAAACGTGAATAGTCATACTAATCCCCTTTTCTTTTCAAGATTAGGCGCCATAAACAT
1 AATAAGACAAACATGAATAGTCATACTAATCCCC-ATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * * *
4960 TGTGTTCCTATAAGGATGCACGATATTAACGCTTTGGTTTCGTAGGGAACGCTTTCTTCCCACCA
65 AGTCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCA
* * *
5025 ATTTTTATCATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCAT
129 ATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
*
5090 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGGTAAATGATATTGATGA-TTTC
194 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTC
* * * * * *
5154 TTTTCGCATGAAAATGTTTTCTTTGCCTTATTTTCCATAAAATCATTGTTTATCCCTTAAATAAG
259 TTTT-GCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATAAG
* * * * *
5219 GCAAG-AGTTGATTCTCGTAACAATCTCCATTGTTTTCATGATTGGGAGCCAAAAACACATTCCC
323 GCAAGCA-TTGATTCTCGAAACAGTCTCCATTCTTTTCATGACT-GGAACCAAAAACACATTCCC
** * * *
5283 TTCATTAGGATACATGACATTGGTGCTTCGGCGTCACAAGAAAAGCTTTTCTTTCAACCGTTTCT
386 TTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTT
* *
5348 GATAGAATCAATGTTTGTCTCTTT
451 GATAGAATCAAAGTTTGTCTCCTT
* * *
5372 AATAAGACAAACGTGAATAGTTATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATA
1 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * * **
5437 GTCTTCTCATAAGGATACACGATACTGACGCTTTAGCTTCGCAAGAAAGGCTTTCTTTTCACCAA
66 GTCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCAA
* * * * *
5502 TTTTTATAATGTC-AAGTTTGTGCCTCAAATCAGAAAAACAAGGATTCTAGTAATCATCTTCATT
130 TTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * *
5566 -ATTTTGTGATTAGGCACTACAAACACATTCTCCTCATGAGGGTAAATGATGTTGATGATTTTTT
195 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* * *
5630 TTTGCGTGGAAAAGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGC
260 TTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATAAGGC
* * **
5695 AAGCATTGATTCTC-ATACCAGTCTCCATTCTTTTCATGATTGGGAACCAAAAATGCATTCCCTT
325 AAGCATTGATTCTCGA-AACAGTCTCCATTCTTTTCATGACT-GGAACCAAAAACACATTCCCTT
* * * * * *
5759 CATTAGGATACATGATAATGACGCATTGGTGTCACAAGAATAGCTTTTCTTTCAACCATTTTTTA
388 CATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGA
* *
5824 TAGAATCAAAGTTTATCT-ATT
453 TAGAATCAAAGTTTGTCTCCTT
* * * **
5845 AAATAGGGCAAACATGAATAGTTATACTAATCCCCATTCTTTTCAGGATTCCGCACCATAAACAT
1 -AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * * *
5910 AGTCTTCTCATAAGAATACACGATGTTGGCGCTTTGGTTTTGTAAGAAAGGCTTTCTTCCCAGCA
65 AGTCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCA
* * *
5975 ATTTTTATAATATCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTAATAATGATCTTCAT
129 ATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * *
6040 TCAATTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGGTAAATGGTATTGATGATTTTC
194 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTC
* * *
6105 TTTTGCATGGAAATGTTTCATTTGCCCTATTTTCCATAAAATCATAGTTCATCCCCTAAATAAGG
259 TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATAAGG
* * * *
6170 CAAGCATTGATTCTC-ATAACAGTCTCCATTCTTTTCAGGATTGCGAACCAAAAGCACTTTCCCT
324 CAAGCATTGATTCTCGA-AACAGTCTCCATTCTTTTCATGACTG-GAACCAAAAACACATTCCCT
* * * * * *
6234 TCATAAGGATACATGACACTGATGCTTTGGTGTCGCAAGAATAGCTTTTCTTTCAACCGTTTTTT
387 TCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTG
**
6299 ATAGAATCAAAGTTAATCT-CTT
452 ATAGAATCAAAGTTTGTCTCCTT
** * * * * *
6321 AAATAAGACAAACACAAATAGACATACTAGTCCTCATTCTTTTCAAGATTCGGCACCATAAACAT
1 -AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * ** * * * * *
6386 AGTCTTCTCATAAAGATATACGATGTTGACATTTTGGGTCCGTAAGAAAGGCTTTCTTCCCACCG
65 AGTCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCA
* **
6451 ATTTTTACAATGTCTAAGTTCGCCCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
129 ATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * * *
6516 TCAATTTGTGATTAGGCACCATAAACACATTATCCTCATTAGGGTAAATGGTATTGATGATTTTC
194 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTC
* * *
6581 TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATTGCTCATCCCTTAAATAAGG
259 TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATAAGG
* * * * **
6646 CAAGCGTTGATTCT-TATAACAGTCACCATTTTTTTCATGGTTGGGAACCAAAAACACATTCCCT
324 CAAGCATTGATTCTCGA-AACAGTCTCCATTCTTTTCATGACT-GGAACCAAAAACACATTCCCT
* * ** *
6710 TCATTAGGATACATGACACTGATGCTTCCGTGTCACAAGAAAAGCTTTTCTTTGAACCGTTTTTG
387 TCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTG
*
6775 ATGGAATCAAAGTTTGTCT-CTCT
452 ATAGAATCAAAGTTTGTCTCCT-T
* * *
6798 AATAAGA-AAAAAGTGAATAGTC-TCACCAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACA
1 AATAAGACAAACA-TGAATAGTCAT-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
* * * * * * **
6861 TAGTC-TC-ATAAAGATTCACGATTTTGACGCTTTGGGTTCGCAAGAAAGGCTTTCTTGTCACCA
64 TAGTCTTCTATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCA
* *
6924 ATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCAT
129 ATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
*
6989 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGGTAAATGATATTGATGATTTTC
194 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTC
* * * * *
7054 TTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGG
259 TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATAAGG
* * *
7119 CAAG-AGTTGATTCTCGTAACAGTCTCCATTGTTTTCATGATTAGGAACCAAAAACACATTCCCT
324 CAAGCA-TTGATTCTCGAAACAGTCTCCATTCTTTTCATGACT-GGAACCAAAAACACATTCCCT
* *
7183 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCATTTTTG
387 TCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTG
*
7248 ATAGAATCAAAGTTTGTCTCTTT
452 ATAGAATCAAAGTTTGTCTCCTT
* * *
7271 AATAAGATAAACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCCCCATAAACATA
1 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * **
7335 GTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGGAAGAAAGGTTTTCTTTGCACCAA
66 GTCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCAA
* * * * * *
7400 TTTTTATAATGTCCAATTTGGTGCCTCAAATGAGACAAACATGAATTGTAGTAACGATCTTCATT
130 TTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
*
7465 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGGTAAATGATATTGATGATTTTCT
195 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
** ** *
7530 TTTGCGGGGAAATGTTTCCTTTGCCCTATTTTCCAAAAAATCAAAGTT
260 TTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTT
7578 TGTCTCCTTA
Statistics
Matches: 5640, Mismatches: 984, Indels: 675
0.77 0.13 0.09
Matches are distributed among these distances:
434 1 0.00
435 5 0.00
436 2 0.00
437 5 0.00
439 6 0.00
440 5 0.00
441 12 0.00
442 8 0.00
443 20 0.00
444 11 0.00
445 17 0.00
446 13 0.00
447 19 0.00
448 8 0.00
449 7 0.00
451 5 0.00
453 8 0.00
454 6 0.00
455 7 0.00
456 8 0.00
457 10 0.00
458 6 0.00
459 9 0.00
460 25 0.00
461 15 0.00
462 9 0.00
463 19 0.00
464 11 0.00
465 4 0.00
466 4 0.00
467 14 0.00
468 5 0.00
469 17 0.00
470 12 0.00
471 59 0.01
472 208 0.04
473 934 0.17
474 960 0.17
475 1011 0.18
476 974 0.17
477 798 0.14
478 42 0.01
479 11 0.00
480 7 0.00
481 10 0.00
482 12 0.00
483 6 0.00
484 10 0.00
485 4 0.00
486 6 0.00
487 1 0.00
490 3 0.00
491 4 0.00
493 5 0.00
494 19 0.00
495 12 0.00
496 21 0.00
497 26 0.00
498 8 0.00
499 8 0.00
500 2 0.00
501 1 0.00
502 6 0.00
504 7 0.00
505 13 0.00
506 10 0.00
507 12 0.00
508 5 0.00
509 1 0.00
510 5 0.00
511 5 0.00
512 4 0.00
513 5 0.00
514 3 0.00
515 6 0.00
516 3 0.00
517 4 0.00
518 7 0.00
519 11 0.00
520 6 0.00
521 6 0.00
522 11 0.00
523 6 0.00
524 3 0.00
527 6 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (474 bp):
AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
GTCTTCTATAAGGATACACGATATTGACGCTTTGGTTTCGGAAGAAACGCTTTCTTCCCACCAAT
TTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTT
TTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCTTAAATAAGGCA
AGCATTGATTCTCGAAACAGTCTCCATTCTTTTCATGACTGGAACCAAAAACACATTCCCTTCAT
TAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAG
AATCAAAGTTTGTCTCCTT
Found at i:2173 original size:159 final size:158
Alignment explanation
Indices: 1502--2177 Score: 383
Period size: 159 Copynumber: 4.3 Consensus size: 158
1492 ACATCGATGC
* * * *
1502 TTTGGTGTCGCAAGAAAAGCTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
1 TTTGGTTTCGTAAGAAAAGCTTTCTTTCCACCATTTTTGATA-AATCAAAGTTTGTCTCCTTAAT
* * * *
1567 AAGACAAATATGAATAGTC-TTACTAATCCCCATTCTTTTTAGGATTAGGCACCATAA-ACATAG
65 AAGACAAACATGAATAGTCATAAC-AATCCCCATTCTTTTCAGGATTAGGCACCATAACACATTG
* * *
1630 TCTTCTCATAAGGATACACGATATTGATGC
129 TCTTCCCATAAGGATACACGATATTGACGA
* * * * * * *
1660 TTTGGTTTTGGAAGAAAGGCTTTC-TTCGCACCAATTTTT-TTAATGTCTAA-TTTCGT-GCCTC
1 TTTGGTTTCGTAAGAAAAGCTTTCTTTC-CACC-ATTTTTGATAA-ATCAAAGTTT-GTCTCCT-
* * * * ** *
1721 GAGTGAGACAAACATGAATTGT-AGTAACAATCTTCATTCATTTT--GTGATTAGGCACTATAAC
61 TAATAAGACAAACATGAATAGTCA-TAACAATCCCCATTC-TTTTCAG-GATTAGGCACCATAAC
* * * **
1783 ACA-T-TC-TCCTCATTAGGGTAAACGATATTGATTA
123 ACATTGTCTTCC-CATAAGGATACACGATATTGACGA
** * * * ** ** *
1817 TTTTCTTT--TACATGGAAATG-TTTCCTTTGCC-CTATTTTCCTCA-AAATCGTAGTTCATTTC
1 TTTGGTTTCGTA-A--GAAAAGCTTT-CTTT-CCACCATTTT--TGATAAATCAAAGTTTGTCTC
* * * * ** * * * * * *
1877 CTAAATAAGGCAAGCTTTG-ATTCTCATAACAGTCTCCATTCTTTTCATGATT-GCGAACTAAAA
59 CTTAATAAGACAAAC-ATGAATAGTCATAACAATCCCCATTCTTTTCAGGATTAG-GCACCATAA
** * * *
1940 GCACATTCCCTT--CATAAGGATACATGACATTGACGC
122 -CACATTGTCTTCCCATAAGGATACACGATATTGACGA
* * * * *
1976 TTTGGTGTCATAAGAAAAGTTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAA
1 TTTGGTTTCGTAAGAAAAG-CTTTCTTTCCACCATTTTTGATA-AATCAAAGTTTGTCTCCTTAA
2041 TAAGACAAACATGAATAGTCAT-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAA-ACATT
64 TAAGACAAACATGAATAGTCATAAC-AATCCCCATTCTTTTCAGGATTAGGCACCATAACACATT
2104 GTCTTCCCATAAGGATACACGATATTGACGA
128 GTCTTCCCATAAGGATACACGATATTGACGA
* *
2135 TTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTT-ATAA
1 TTTGGTTTCGTAAGAAAAGCTTTCTTTCCACC-ATTTTTGATAA
2178 TGTCTAAGTT
Statistics
Matches: 378, Mismatches: 96, Indels: 89
0.67 0.17 0.16
Matches are distributed among these distances:
155 1 0.00
156 3 0.01
157 61 0.16
158 142 0.38
159 160 0.42
160 7 0.02
161 3 0.01
162 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (158 bp):
TTTGGTTTCGTAAGAAAAGCTTTCTTTCCACCATTTTTGATAAATCAAAGTTTGTCTCCTTAATA
AGACAAACATGAATAGTCATAACAATCCCCATTCTTTTCAGGATTAGGCACCATAACACATTGTC
TTCCCATAAGGATACACGATATTGACGA
Found at i:2758 original size:20 final size:21
Alignment explanation
Indices: 2735--2791 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
2725 TACATGTTGC
2735 AATGTATCGATACATG-AAAA
1 AATGTATCGATACATGAAAAA
2755 AATGTATCGATACATGAAAAA
1 AATGTATCGATACATGAAAAA
2776 AATGTATCGATACATG
1 AATGTATCGATACATG
2792 TCATTGGGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 16 0.44
21 20 0.56
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAA
Found at i:6762 original size:476 final size:475
Alignment explanation
Indices: 3381--7577 Score: 5744
Period size: 473 Copynumber: 8.8 Consensus size: 475
3371 TAAGCTTTCA
* * *
3381 CCTTCATTAGGATACATGACACTGAGGCTTTAGTGTCACAAGAAAAGCTTTTCTTTGAACCGTTT
1 CCTTCATTAGGATACATGACACTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTT
* * *
3446 TTGATGGAATCAAAGTTTGTCTCTCTAATAAGACAAA-AGTGAATAGTCTTACCAATCCCCATTC
66 TTGATAGAATCAAAGTTTGTCTCT-TAATAAGACAAACA-TGAATAGTCATACTAATCCCCATTC
* *
3510 TTTTCAAGATTAGGCACCATAAACATAG---TCTCATAAGGATTCACGATTTTGACGCTTTGGGT
129 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGGT
* *
3572 TCGCAAGAAAGGCTTTCTTCTCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAA
194 TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAA
* *
3637 ACAAGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAA
259 ACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
* *
3702 TAGGGTAAATGATATTGATGATTTTCATTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAA
324 TAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAA
* * * *
3767 AATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGA-ACCAGTCTCCATTCTTTTTAT
389 AATCATAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC-ATAACAGTCTCCATTCTTTTCAT
* *
3831 GACTGAGAACCAAAAACACATTC
453 GATTGGGAACCAAAAACACATTC
* * * * * * * *
3854 CCTTTATTAGGATACTTCACATTGATACTTTGGAGTCGCAAGAAAAGCTTTTCTTTCAACCATTT
1 CCTTCATTAGGATACATGACACTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTT
* **
3919 CTGATAGAATCAAAGTTTGTCTCCTTAATAA-AGCAAACATGAATAGTCATACTAATCCGCTTTT
66 TTGATAGAATCAAAGTTTGTCT-CTTAATAAGA-CAAACATGAATAGTCATACTAATCC-CCATT
* * * *
3983 CTTTTCAAGATTAGGCGCCATAAACATTGTCTTC-CTATAAGGATACACGATATTGATGCTTTAG
128 CTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATATTGACGCTTTGG
* * * * * * *
4047 TTTCGTAGGGAATGCTTTCTTCCCACCAATTTTTATCATGTCTAAGTTCGTGTCTCAAATGAGAC
192 GTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGAC
* * *
4112 AAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTACAAACGCATTCTCCTC
257 AAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
* *
4177 ATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCTTATTTTCCAT
322 ATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCAT
* *
4242 AAAATCATTGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCA
387 AAAATCATAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCA
* *
4307 TGGTTTGGAACCAAAAACACATTC
452 TGATTGGGAACCAAAAACACATTC
* * * *
4331 CCTTCATTAGGATACATGACCCTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTGAACCGTTT
1 CCTTCATTAGGATACATGACACTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTT
* * * *
4396 TTGATGGAATCAAAGTTTGTCTCTCTAATAAGATAAA-AGTGAATAGTCTTACCAATCCCCATTC
66 TTGATAGAATCAAAGTTTGTCTCT-TAATAAGACAAACA-TGAATAGTCATACTAATCCCCATTC
* * * *
4460 TTTTCAGGATTAGGCACCATAAACATAG---TCTCATATGGATTCACGATTTTGACGCTTTGGGT
129 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGGT
** *
4522 TCGCAAGAAAGGCTTTCTTGTCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAA
194 TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAA
* *
4587 ACAAGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAA
259 ACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
* *
4652 TAGGGTAAATGATATTGATGATTTTCATTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAA
324 TAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAA
* * *
4717 AATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGA-ACCAGTCTCCATTCTTTTCAT
389 AATCATAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC-ATAACAGTCTCCATTCTTTTCAT
* *
4781 GACTGAGAACCAAAAACACATTC
453 GATTGGGAACCAAAAACACATTC
* * * * * *
4804 CCTTTATTAGGATAC-TGCACATTGATACTTTGGAGTCGCAAGAAAACCTTTTCTTTCAACCGTT
1 CCTTCATTAGGATACATG-ACACTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTT
* * *
4868 TTTGATAGAATCAAAGTTTGTCTCCTTAATAAAACAAACGTGAATAGTCATACTAATCCCCTTTT
65 TTTGATAGAATCAAAGTTTGTCT-CTTAATAAGACAAACATGAATAGTCATACTAATCCCC-ATT
* * * * *
4933 CTTTTCAAGATTAGGCGCCATAAACATTGTGTTC-CTATAAGGATGCACGATATTAACGCTTTGG
128 CTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATATTGACGCTTTGG
* * * * * * *
4997 TTTCGTAGGGAACGCTTTCTTCCCACCAATTTTTATCATGTCTAAGTTCGTGTCTCAAATGAGAC
192 GTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGAC
5062 AAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
257 AAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
* * * *
5127 AATAGGGTAAATGATATTGATGA-TTTCTTTTCGCATGAAAATGTTTTCTTTGCCTTATTTTCCA
322 ATTAGGGTAAATGATATTGATGATTTTCTTTT-GCATGGAAATGTTTCCTTTGCCCTATTTTCCA
* * * * *
5191 TAAAATCATTGTTTATCCCTTAAATAAGGCAAG-AGTTGATTCTCGTAACAATCTCCATTGTTTT
386 TAAAATCATAGTTCATCCCTTAAATAAGGCAAGCA-TTGATTCTCATAACAGTCTCCATTCTTTT
*
5255 CATGATTGGGAGCCAAAAACACATTC
450 CATGATTGGGAACCAAAAACACATTC
* * * *
5281 CCTTCATTAGGATACATGACATTGGTGCTTCGGCGTCACAAGAAAAGCTTTTCTTTCAACCGTTT
1 CCTTCATTAGGATACATGACACTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTT
* * * *
5346 CTGATAGAATCAATGTTTGTCTCTTTAATAAGACAAACGTGAATAGTTATACTAATCCCCATTCT
66 TTGATAGAATCAAAGTTTGTCTC-TTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* * *
5411 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATACTGACGCTTTAGCTT
130 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGGTT
** * * *
5476 CGCAAGAAAGGCTTTCTTTTCACCAATTTTTATAATGTC-AAGTTTGTGCCTCAAATCAGAAAAA
195 CGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAA
* ** * *
5540 CAAGGATTCTAGTAATCATCTTCATT-ATTTTGTGATTAGGCACTACAAACACATTCTCCTCATG
260 CATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* * * * *
5604 AGGGTAAATGATGTTGATGATTTTTTTTTGCGTGGAAAAGTTTCCTTTGCCCTATTTTCCTTAAA
325 AGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAA
* *
5669 ATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATACCAGTCTCCATTCTTTTCATGA
390 ATCATAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGA
**
5734 TTGGGAACCAAAAATGCATTC
455 TTGGGAACCAAAAACACATTC
* * * * * *
5755 CCTTCATTAGGATACATGATAATGACGCATTGGTGTCACAAGAATAGCTTTTCTTTCAACCATTT
1 CCTTCATTAGGATACATGACACTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTT
* * * * * *
5820 TTTATAGAATCAAAGTTTATCTATTAAATAGGGCAAACATGAATAGTTATACTAATCCCCATTCT
66 TTGATAGAATCAAAGTTTGTCTCTT-AATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* ** * * * *
5885 TTTCAGGATTCCGCACCATAAACATAGTCTTCTCATAAGAATACACGATGTTGGCGCTTTGGTTT
130 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGGTT
* * * * *
5950 TGTAAGAAAGGCTTTCTTCCCAGCAATTTTTATAATATCTAAGTTCGTCCCTCAAATGAGACAAA
195 CGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * *
6015 CATGGATTCTAATAATGATCTTCATTCAATTTGTGATTAGGCACTATAAACACATTATCCTCATT
260 CATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* *
6080 AGGGTAAATGGTATTGATGATTTTCTTTTGCATGGAAATGTTTCATTTGCCCTATTTTCCATAAA
325 AGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAA
* *
6145 ATCATAGTTCATCCCCTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAGGA
390 ATCATAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGA
* * *
6210 TTGCGAACCAAAAGCACTTTC
455 TTGGGAACCAAAAACACATTC
* * *
6231 CCTTCATAAGGATACATGACACTGATGCTTTGGTGTCGCAAGAATAGCTTTTCTTTCAACCGTTT
1 CCTTCATTAGGATACATGACACTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTT
* ** ** * * *
6296 TTTATAGAATCAAAGTTAATCTCTTAAATAAGACAAACACAAATAGACATACTAGTCCTCATTCT
66 TTGATAGAATCAAAGTTTGTCTCTT-AATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* * * * ** *
6361 TTTCAAGATTCGGCACCATAAACATAGTCTTCTCATAAAGATATACGATGTTGACATTTTGGGTC
130 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGGTT
* * * **
6426 CGTAAGAAAGGCTTTCTTCCCACCGATTTTTACAATGTCTAAGTTCGCCCCTCAAATGAGACAAA
195 CGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * *
6491 CATGGATTCTAGTAATGATCTTCATTCAATTTGTGATTAGGCACCATAAACACATTATCCTCATT
260 CATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
*
6556 AGGGTAAATGGTATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAA
325 AGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAA
* * * * * * *
6621 ATCATTGCTCATCCCTTAAATAAGGCAAGCGTTGATTCTTATAACAGTCACCATTTTTTTCATGG
390 ATCATAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGA
6686 TTGGGAACCAAAAACACATTC
455 TTGGGAACCAAAAACACATTC
** *
6707 CCTTCATTAGGATACATGACACTGATGCTTCCGTGTCACAAGAAAAGCTTTTCTTTGAACCGTTT
1 CCTTCATTAGGATACATGACACTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTT
* * * *
6772 TTGATGGAATCAAAGTTTGTCTCTCTAATAAGA-AAAAAGTGAATAGTC-TCACCAATCCCCGTT
66 TTGATAGAATCAAAGTTTGTCTCT-TAATAAGACAAACA-TGAATAGTCAT-ACTAATCCCCATT
* * * *
6835 CTTTTCAGGATTAGGCACCATAAACATAG---TCTCATAAAGATTCACGATTTTGACGCTTTGGG
128 CTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGG
** *
6897 TTCGCAAGAAAGGCTTTCTTGTCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACA
193 TTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACA
6962 AACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA
258 AACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA
* * * *
7027 ATAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCATA
323 TTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATA
* * *
7092 AAATCATAGTTTATCCCTTAAATAAGGCAAG-AGTTGATTCTCGTAACAGTCTCCATTGTTTTCA
388 AAATCATAGTTCATCCCTTAAATAAGGCAAGCA-TTGATTCTCATAACAGTCTCCATTCTTTTCA
*
7156 TGATTAGGAACCAAAAACACATTC
452 TGATTGGGAACCAAAAACACATTC
* *
7180 CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCATTT
1 CCTTCATTAGGATACATGACACTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTT
* *
7245 TTGATAGAATCAAAGTTTGTCTCTTTAATAAGATAAACATGAAGAGTCATACT-ATCCCCATTCT
66 TTGATAGAATCAAAGTTTGTCTC-TTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* * * *
7309 TTTCAGGATTAGGCCCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
130 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGGTT
* * ** * * *
7374 CGGAAGAAAGGTTTTCTTTGCACCAATTTTTATAATGTCCAATTTGGTGCCTCAAATGAGACAAA
195 CGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * *
7439 CATGAATTGTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
260 CATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* ** *
7504 AAGGTAAATGATATTGATGATTTTCTTTTGCGGGGAAATGTTTCCTTTGCCCTATTTTCCAAAAA
325 AGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAA
*
7569 ATCAAAGTT
390 ATCATAGTT
7578 TGTCTCCTTA
Statistics
Matches: 3277, Mismatches: 404, Indels: 84
0.87 0.11 0.02
Matches are distributed among these distances:
472 39 0.01
473 868 0.26
474 428 0.13
475 315 0.10
476 860 0.26
477 764 0.23
478 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (475 bp):
CCTTCATTAGGATACATGACACTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTT
TTGATAGAATCAAAGTTTGTCTCTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGGTTC
GCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAAC
ATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
GGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAA
TCATAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGAT
TGGGAACCAAAAACACATTC
Found at i:7365 original size:158 final size:156
Alignment explanation
Indices: 5319--16281 Score: 777
Period size: 159 Copynumber: 69.2 Consensus size: 156
5309 TTCGGCGTCA
* * *
5319 CAAGAAAAGCTTTTCTTT-CAACC-GTTTCTGATAGAATCAATGTTTGTCTCTTTAATAAGACAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTT-TTATA-AATCAAAGTTTGTCTCTTTAATAAGACAA
* * * *
5382 ACGTGAATAGTTATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
62 ACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * * * *
5447 AAGGATACACGATACTGACGCTTTAGCTTCG
126 AAGGATACACGATATTGATGATTTGGTTTCG
* * * * ** * *
5478 CAAGAAAGGCTTTCTTTTCACCAATTTTTATAATGTC-AAGTTTGTGC-CTCAAATCAGAAAAAC
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGT-CTCTTTAATAAGACAAAC
* * * ** * * * * * *
5541 A--AGGATTCTAGTAATCATCTTCATTATTTT--GTGATTAGGCACTACAAACACATTCTCCTCA
64 ATGAAGAGTC-A-TACT-ATCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCA
* * * * * ** *
5602 TGAGGGTAAATGATGTTGATGATTTTTTTTTG
125 TAAGGATACACGATATTGATGATTTGGTTTCG
** * * ** * * *
5634 CGTGGAAAAGTTTCCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGGCAA
1 C-AAGAAAAGTTTTCTTTGCACCAATTTT--TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAA
* *** * * * * *
5697 GCATTG-ATTCTCATACCAGTCTCCATTCTTTTCATGATTGGGAACCA-AAA-AT-G-CATTCCC
62 ACA-TGAAGAGTCATACTA-TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC-TT--C
* * * * * *
5757 TTCATTAGGATACATGATAATGACGCA-TTGGTGTCA
122 -TCATAAGGATACACGATATTGATG-ATTTGGTTTCG
* * * * * * *
5793 CAAGAATAGCTTTTCTTT-CAACCATTTTTTATAGAATCAAAGTTTATCTATTAAATAGGGCAAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTTTTATA-AATCAAAGTTTGTCTCTTTAATAAGACAAA
* * **
5857 CATGAATAGTTATACTAATCCCCATTCTTTTCAGGATTCCGCACCATAAACATAGTCTTCTCATA
63 CATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
* * ** * *
5922 AGAATACACGATGTTGGCGCTTTGGTTTTG
127 AGGATACACGATATTGATGATTTGGTTTCG
* * * ** * * * * ** *
5952 TAAGAAAGGCTTTCTTCCCAGCAATTTTTATAATATCTAAGTTCGTCCCTCAAATGAGACAAACA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGTCTCTTTAATAAGACAAACA
* * ** * * * * * *
6017 TG--GATTCTAATAATGATCTTCATTCAATTT--GTGATTAGGCACTATAAACACATTATCCTCA
65 TGAAGAGTC--ATACT-ATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCA
* * * * * ** *
6078 TTAGGGTAAATGGTATTGATGATTTTCTTTTG
125 TAAGGATACACGATATTGATGATTTGGTTTCG
* * * * * ** * * * *
6110 CATGGAAA-TGTTTCATTTGC-CCTATTTTCCATAAAATCATAGTTCATCCCCTAAATAAGGCAA
1 CAAGAAAAGT-TTTC-TTTGCACCAATTTT-TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAA
* *** * * * *
6173 GCATTG-ATTCTCATAAC-AGTCTCCATTCTTTTCAGGATT-GCGAACCA-AAAGCACT-TTC-C
62 ACA-TGAAGAGTCAT-ACTA-TCCCCATTCTTTTCAGGATTAG-GCACCATAAA-CA-TAGTCTT
* * * * *
6232 CTTCATAAGGATACATGACACTGATGCTTTGGTGTCG
121 C-TCATAAGGATACACGATATTGATGATTTGGTTTCG
* ** ** *
6269 CAAGAATAGCTTTTCTTT-CAACCGTTTTTTATAGAATCAAAGTTAATCTCTTAAATAAGACAAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTTTTATA-AATCAAAGTTTGTCTCTTTAATAAGACAAA
** * * * * *
6333 CACAAATAGACATACTAGTCCTCATTCTTTTCAAGATTCGGCACCATAAACATAGTCTTCTCATA
63 CATGAAGAGTCATACTA-TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
* * * * * *
6398 AAGATATACGATGTTGA-CATTTTGGGTCCG
127 AGGATACACGATATTGATGA-TTTGGTTTCG
* * * ** * * * * * * * ** *
6428 TAAGAAAGGCTTTCTTCCCACCGATTTTTACAATGTCTAAGTTCGCCCCTCAAATGAGACAAACA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGTCTCTTTAATAAGACAAACA
* * ** * * * * *
6493 TG--GATTCTAGTAATGATCTTCATTCAATTT--GTGATTAGGCACCATAAACACATTATCCTCA
65 TGAAGAGTC-A-TACT-ATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCA
* * * * * ** *
6554 TTAGGGTAAATGGTATTGATGATTTTCTTTTG
125 TAAGGATACACGATATTGATGATTTGGTTTCG
* * * * * ** * ** * * * *
6586 CATGGAAATGTTTCCTTTGC-CCTATTTTCCATAAAATCATTGCTCATCCCTTAAATAAGGCAAG
1 CA-AGAAAAGTTTTCTTTGCACCAATTTT-TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
** * * * * * * * * *
6650 C--GTTGATTCTTATAAC-AGTCACCATTTTTTTCATGG-TTGGGAACCAAAAACACATTC-CCT
63 CATGAAGAGTC--AT-ACTA-TCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTTC-
* * * * * ** * *
6710 TCATTAGGATACATGACACTGATGCTTCCGTGTCA
122 TCATAAGGATACACGATATTGATGATTTGGTTTCG
* * * *
6745 CAAGAAAAGCTTTTCTTTGAACC-GTTTTTGATGGAATCAAAGTTTGTCTCTCTAATAAGA-AAA
1 CAAGAAAAG-TTTTCTTTGCACCAATTTTT-AT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
* * * *
6808 AAGTGAATAGTC-TCACCAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAG---TCTCA
63 CA-TGAAGAGTCAT-A-CTATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * * * * *
6869 TAAAGATTCACGATTTTGACGCTTTGGGTTCG
125 TAAGGATACACGATATTGATGATTTGGTTTCG
* * * * ** *
6901 CAAGAAAGGCTTTC-TTGTCACCAATTTTTATAATGTCTAAGTTCATG-C-CTCAAATGAGACAA
1 CAAGAAAAGTTTTCTTTG-CACCAATTTTTATAA-ATCAAAGTT--TGTCTCTTTAATAAGACAA
* ** ** * * * *
6963 ACATG--GATTCTAGTAAAGATCTTCATTCATTTT--GTGATTAGGCACTATAAACACATTCTCC
62 ACATGAAGAGTC-A-T-ACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTC
* * * ** *
7024 TCA-ATAGGGTAAATGATATTGATGATTTTCTTTTG
122 TCATA-AGGATACACGATATTGATGATTTGGTTTCG
* ** * * * * * *
7059 CATGAAAATGTTTTCTTTGC-CTTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAG
1 CAAGAAAA-GTTTTCTTTGCACCAATTTT-TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAA-
** *** * * * * * * * * *
7123 AGTTG-ATTCTCGTAAC-AGTCTCCATTGTTTTCATGATTAGGAACCAAAAACACATTC-CCTTC
62 ACATGAAGAGTCAT-ACTA-TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TC
* * * * * *
7185 ATTAGGATACATGACATTGATGCTTTGGTGTCA
124 ATAAGGATACACGATATTGATGATTTGGTTTCG
*
7218 CAAGAAAAGCTTTTCTTT-CAACC-ATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGATAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTTTT-ATA-AATCAAAGTTTGTCTCTTTAATAAGACAA
*
7281 ACATGAAGAGTCATACTATCCCCATTCTTTTCAGGATTAGGCCCCATAAACATAGTCTTCTCATA
62 ACATGAAGAGTCATACTATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
*
7346 AGGATACACGATATTGATGCTTTGGTTTCG
127 AGGATACACGATATTGATGATTTGGTTTCG
* * * * ** *
7376 GAAGAAAGGTTTTCTTTGCACCAATTTTTATAATGTCCAA-TTTGGTGC-CTCAAATGAGACAAA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTT-GT-CTCTTTAATAAGACAAA
* ** * * * *
7439 CATGAATTGTAGT-A-ACGATCTTCATTCATTTT--GTGATTAGGCACTATAAACACATTCTCCT
63 CATGAA--G-AGTCATACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCT
* * ** *
7500 CATTAAGG-TAAATGATATTGATGATTTTCTTTTG
123 CA-TAAGGATACACGATATTGATGATTTGGTTTCG
** * * * * * *
7534 CGGGGAAATGTTTCCTTTGC-CCTATTTTCCAAAAAATCAAAGTTTGTCTCCTTAATAAGACAAA
1 C-AAGAAAAGTTTTCTTTGCACCAATTTT--TATAAATCAAAGTTTGTCTCTTTAATAAGACAAA
* * * *
7598 CATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCATAAACATTGTCTTCCCATA
63 CATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
*
7663 AGGATACACGATATTGACGATTTGGTTTCG
127 AGGATACACGATATTGATGATTTGGTTTCG
* * * ** * * * * ** *
7693 TAAGAAACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTTTCTCAAATGAGACAAACA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGTCTCTTTAATAAGACAAACA
* ** *** * * ** * *
7758 TG--GATTCTAGTAAAGATCTTTATTCATTTT--GTGATTAGGCACTACAAACGCATTCTCCTCA
65 TGAAGAGTC-A-T-ACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCA
* * * * ** *
7819 TTAGGGTAAATGATATTGATGATTTTCTTTTG
125 TAAGGATACACGATATTGATGATTTGGTTTCG
* * ** * ** ** * * * *
7851 CATGAAAATGTTTCCTTTGC-CTTATTTTCCATAAAATCATTGTTCATCCCTTAAATAAGGCAAG
1 CAAGAAAA-GTTTTCTTTGCACCAATTTT-TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
*** * * * * * * *
7915 CATTG-ATTCTCATAAC-AGTCTCCATTCTTTTCATGG-TTTGGAACCAAAAACACATTC-CCTT
63 CA-TGAAGAGTCAT-ACTA-TCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTTC-T
* * * * * * *
7976 CATTAGGATACATGACATTGATGCTTCGGTGTCA
123 CATAAGGATACACGATATTGATGATTTGGTTTCG
* * * *
8010 CAAGAAAAGCTTTTCTTT-CAACC-GTTTCTGATCGAATCAATGTTTGTCTCTTTAATAAGACAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTT-TTAT-AAATCAAAGTTTGTCTCTTTAATAAGACAA
* * * *
8073 ACATGAATAGTCATACTAATCCCCATTCTTTTAAGGATTAGGCACCATAAATATTA-TTTTC-CT
62 ACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACA-TAGTCTTCTC-
*
8136 ATAAGGATACACGATATTGATGCTTTGGTTTCG
124 ATAAGGATACACGATATTGATGATTTGGTTTCG
* * * * * * *
8169 GAAGAAAGGCTTTCTTTGCACCAATTTTTATAATGTCTAA-TTTGGTGC-CTTAAATGAGA-AAA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTT-GT-CTCTTTAATAAGACAAA
* * ** * * * *
8231 GCATGAATTTTAGT-A-ACGATCTTCATTCATTTT--GTGATTAGGCACTATAAACACATTCTCC
63 -CATGAA---GAGTCATACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTC
* * * * ** *
8292 TCATTAGGGTAAATGATATTGATGATTTTCTTTTG
122 TCATAAGGATACACGATATTGATGATTTGGTTTCG
* * ** * * ** * * * * *
8327 CATGGAAA-TGTTTCTTTTGC-CTTATTTTCCATAAAATCATAGTTCATCCCCTAAATAAGGCGA
1 CAAGAAAAGT-TTTC-TTTGCACCAATTTT-TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAA
* * *** * * * * * *
8390 GCGTTG-ATTCTCATAAC-AGTCTCCATTCTTTTCAAGATT-GCGAACCA-AAAGCACATTC-CC
62 AC-ATGAAGAGTCAT-ACTA-TCCCCATTCTTTTCAGGATTAG-GCACCATAAA-CATAGTCTTC
*** * * *
8450 TTCATAAGGATATGTGACATTGATGCTTTGGTGTCG
122 -TCATAAGGATACACGATATTGATGATTTGGTTTCG
* * *
8486 CAAGAAAAGTTTTTCTTT-CA-AACATTTTTGATAGAATCAAAGTTTATCTCCTTAATAAGACAA
1 CAAGAAAAG-TTTTCTTTGCACCA-ATTTTT-ATA-AATCAAAGTTTGTCTCTTTAATAAGACAA
* * * * * * *
8549 ACGTGAATAGTCATACTAATCACCACTCTTTTCAGGATTAGGCACCATAAACATTGTTTTC-CTG
62 ACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-A
* * * * *
8613 TGAGGATACACAACATTGATGCTTTGGTTTTG
125 TAAGGATACACGATATTGATGATTTGGTTTCG
* * * * * * * * * * *
8645 TAAGAAACGCTTTCTTTCCCCCAATTTTTATAATGTCTAAGTTCGTGTCTTAAATGAGACAAACA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGTCTCTTTAATAAGACAAACA
* ** *** * ** * * *
8710 TG--GATTCTAGTAAAAATCTTGATTCATTTT--GCGATTAGGCACTATAAACGCATTCTCCTCT
65 TGAAGAGTC-A-T-ACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCA
* * * * **
8771 TTAGGGTAAATGATATTGATGATTTTCTATT-G
125 TAAGGATACACGATATTGATGATTTGGT-TTCG
* * * ** * ** * * * * * *
8803 CATGGAAATGTTTCCTTTGC-CTTATTTTCGATAAAATCATTGTTTATCCCTTAAATATGGCAAG
1 CA-AGAAAAGTTTTCTTTGCACCAATTTT-TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
** * * * * * * *
8867 C--GTTGATTCCCATAAC-AGTCTCCATTCTTTTCATGG-TTTGGAACCAAAAACACATTC-TCT
63 CATGAAGAGT--CAT-ACTA-TCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTTC-
* * * ** *
8927 TCATTAGGATACATGACATTGATGCGTTGGTGTCG
122 TCATAAGGATACACGATATTGATGATTTGGTTTCG
*** * * ** *
8962 CAAGAAAAGCTTTTCTTT-CAACCGCGTTTGATAGAGTCAAAGTTCATCTCTTTAATAAGACAAT
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTTTTATA-AATCAAAGTTTGTCTCTTTAATAAGACAAA
* * * * * *
9026 CGTGAATAGTCTTACTAATCCCCATTCTTTTCATGATTAGGCACCTTAAACATAGTTTTCTCATA
63 CATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
*
9091 AGGATACACGATATTGATGCTTTGGTTTCG
127 AGGATACACGATATTGATGATTTGGTTTCG
* ** * * * ** **
9121 CAAGAAAAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGC-CTCAAATGTGACAAAC
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGT-CTCTTTAATAAGACAAAC
*** * * ** *** * * * * *
9185 ATGAATTCTAGAAAAGATGTTCATTCATTTT--GTGATTAGGCACTATAAACACATTCTCCTTAT
64 ATGAAGAGT-CATACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCAT
* * * * * ** *
9248 TAGGGTAAATGGTATTGATGATTTTCTTTTG
126 AAGGATACACGATATTGATGATTTGGTTTCG
* * * * ** * *
9279 CATGGAAACA-TTTCCTTTGC-CCTATTTTCCATAAA--ATTG-TTGTTCATTCCTTAAATAAGG
1 CA-AGAAA-AGTTTTCTTTGCACCAATTTT-TATAAATCAAAGTTTG-TC--T-CTTTAATAAGA
* *** * * * * * *
9339 CAAGCATTG-ATTCTCATAATAGTCACCATTCTTTTCATGG-TTGGGAACCAAAAACA-CGT-TC
59 CAAACA-TGAAGAGTCATACTA-TCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCT-
* * * * * * * * *
9400 CCTTCGTTAGGATACATGACATTGATGCTTCGGTGTCA
120 TC-TCATAAGGATACACGATATTGATGATTTGGTTTCG
* * *
9438 CAAGAAAAGCTTTTCTTT-CAACC-GTTTCTGATAGAATCAATGTTTGTCTCTTTAATAAGACAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTT-TTATA-AATCAAAGTTTGTCTCTTTAATAAGACAA
* * * *
9501 ACGTGAATAGTTATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
62 ACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * * * *
9566 AAGGATACACGATACTGATGCTTTAGCTTCA
126 AAGGATACACGATATTGATGATTTGGTTTCG
* * * * * ** *
9597 CAAGAAAGGCTTTCTTTTCACCAATTTTTATAATGTCTAAGTTTGTGC-CTCAAATCAA-AAAAA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGT-CTCTTTAAT-AAGACAAA
* * * ** * * * * * *
9660 CACG--GATTCTAGTAATCATCTTCATTATTTT--GTGATTAGGCACTACAAACACATTCTCCTC
63 CATGAAGAGTC-A-TACT-ATCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTC
* * * * * ** *
9721 ATGAGGGTAAATGATGTTGATGATTTTTTTTTG
124 ATAAGGATACACGATATTGATGATTTGGTTTCG
* * * * ** * * *
9754 CATGGAAATGTTTCCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGGCAA
1 CA-AGAAAAGTTTTCTTTGCACCAATTTT--TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAA
* * *** * * * * * * * * * *
9817 GCGTTG-ATTTTCCTACCAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTC-CCTTC
62 AC-ATGAAGAGTCATACTA-TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TC
* ** * * * * *
9880 ATTAGGATACTTGACATTGACGCTTGGGTGTCG
124 ATAAGGATACACGATATTGATGATTTGGTTTCG
* * * *
9913 CAAGAATAGCTTTTCTTT-CAACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTTTTATA-AATCAAAGTTTGTCTCTTTAATAAGACAAA
** * * *
9977 CACAAATAGACATACTAGTCCCCATTCTTTTCAGGATTCGGCACCATAAACATAGTCTTCTCATA
63 CATGAAGAGTCATACTA-TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
* * * *
10042 AGGATACACGATGTTAACGCTTTGGTTTCG
127 AGGATACACGATATTGATGATTTGGTTTCG
* * * ** * * * * * ** *
10072 TAAGAAAGGCTTTCTTCCCACCGATTTTCACAAAGTCTAAGTTCT-TCCCTCAAATGAGACAAAC
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAAA-TCAAAGTT-TGTCTCTTTAATAAGACAAAC
* * ** * * * * * *
10136 ATG--GATTCTAGTAATGATCTTCATTCAATTT--GTGATTAGGCACTATAAACACATTATCCTC
64 ATGAAGAGTC-A-TACT-ATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTC
* * * * ** *
10197 ATTAGGGTAAATGGA-ATTGATGATTTTCTTTTG
124 ATAAGGATACA-CGATATTGATGATTTGGTTTCG
** * * * * ** * ** * * * *
10230 CGTGGAAATGTTTCCTTTGC-CCTATTTTCCATAAAATCATTGCTCATCCCTTAAATAAGGCAAG
1 C-AAGAAAAGTTTTCTTTGCACCAATTTT-TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
* *** * * * * * * *
10294 CGTTG-ATTCTCATAAC-AGTCACCATTCTTTTCACGG-TTGGGAACCAAAAACACATTC-CCTT
63 C-ATGAAGAGTCAT-ACTA-TCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTTC-T
* * * * * ** *
10355 CATTAGGATACATGACACTGATGCTTTAATGTCG
123 CATAAGGATACACGATATTGATGATTTGGTTTCG
* * * * *
10389 CAAGAAAAGCTTTTCTTTGAACC-GTTTTTGATGGAATCAACGTTTGTCTCTCTAATAAGACAAA
1 CAAGAAAAG-TTTTCTTTGCACCAATTTTT-AT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
* * * * *
10453 -AGTGAATAGTCTTACCAATCCCCATTCTTTTTAGGATTAGACACCATAAACATAG---TCTCAT
63 CA-TGAAGAGTCATA-CTATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * * * *
10514 AAGGATTCACGATTTTGACGCTTTGGGTTCG
126 AAGGATACACGATATTGATGATTTGGTTTCG
* * * ** *
10545 CAAGAAAGGCTTTCTTCT-CACCAATTTTTATAATGTCAAAGTTCATG-C-CTCAAATGAGACAA
1 CAAGAAAAGTTTTCTT-TGCACCAATTTTTATAA-ATCAAAGTT--TGTCTCTTTAATAAGACAA
* ** ** * * * *
10607 ACATG--GATTCTAGTAAAGATCTTCATTCATTTT--GTGATTAGGCACTATAAACACATTCTCC
62 ACATGAAGAGTC-A-T-ACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTC
* * * **
10668 TCA-ATAGGGTAAATGATATTGATGATTTTCATTT-G
122 TCATA-AGGATACACGATATTGATGA-TTTGGTTTCG
* * * ** * * * * *
10703 CATGAAAATGTTTCCTTTGC-CCTATTTCTT-TAAAATCAAAGTTCATCCCTTAAAAAAGGCAAG
1 CAAGAAAA-GTTTTCTTTGCACCAATTT-TTAT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
*** * * * * * * * *
10766 CATTG-ATTCTCGA-ACCAATCTCCATTCTTTTCATGACT-GAGAACCAAAAACACATTCCCTT-
63 CA-TGAAGAGTC-ATA-CTATCCCCATTCTTTTCAGGATTAG-GCACCATAAACATAGT--CTTC
* * * ** *
10827 T-ATTAGGATACTTC-AGATTGAT-ACTTTGGAGTCA
122 TCATAAGGATAC-ACGATATTGATGA-TTTGGTTTCG
* * * *
10861 CAAGAAAACCTTTTCTTT-CAACC-GTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAAACAA
1 CAAGAAAA-GTTTTCTTTGC-ACCAATTTTT-ATA-AATCAAAGTTTGTCTCTTTAATAAGACAA
* * * * * * *
10924 ACGTGAATAATCATACTAATCCCCTTTTCTTTTCAAGATTAGGCGCCATAAACATTGTCTTC-CT
62 ACATGAAGAGTCATACT-ATCCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-
* *
10988 ATAAGGATACACGACATTGATGCTTTGGTTTCG
124 ATAAGGATACACGATATTGATGATTTGGTTTCG
* * * * * ** ** * * * ** *
11021 TAGGGAACGCTTTCTTCCCACCAATTTTTATCATGTCTAAGTTCGTGTCTCAAATGAGACAAACA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTAT-AAATCAAAGTTTGTCTCTTTAATAAGACAAACA
* ** ** * * ** * **
11086 TG--GATTCTAGTAAAGATCTTCATT-TATTT-TGTGATTAGGCACTATAAACGCATTCCCCTCA
65 TGAAGAGTC-A-T-ACTATCCCCATTCT-TTTCAG-GATTAGGCACCATAAACATAGTCTTCTCA
* * * * * *
11147 TTAGGGTAAATGATATTGATGATTTTGTTTTG
125 TAAGGATACACGATATTGATGATTTGGTTTCG
* * * ** * * ** ** * * * *
11179 CATGGAAATGTTTCCTTTGC-CTTATTTTCCAAAAAATCATTGTTCATCCCTTAAATAAGGCAAG
1 CA-AGAAAAGTTTTCTTTGCACCAATTTT--TATAAATCAAAGTTTGTCTCTTTAATAAGACAAA
* **** * * * * * * * *
11243 CGTTGATTCTTC-TAAC-AGTCTCCATTCTTTTCATGGCTT-GGAACTAAAAACACATTC-CCTT
63 C-ATGAAGAGTCAT-ACTA-TCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTTC-T
* * * * * *
11304 CATTAGGATACATGACATCGATGCTTTGGTGTCG
123 CATAAGGATACACGATATTGATGATTTGGTTTCG
* * *
11338 AAAGAAAAGCTTTTCTTT-CAACAGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAA
1 CAAGAAAAG-TTTTCTTTGCACCAATTTTT-ATA-AATCAAAGTTTGTCTCTTTAATAAGACAAA
* * * * *
11402 TATGAATAGCCTTACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCA-A
63 CATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
* *
11466 TAGGATACACGATATTGATGCTTTGGTTTTG
127 -AGGATACACGATATTGATGATTTGGTTTCG
* * * * * * * * ** * *
11497 GAAGAAAGGCTTTCTTCGCACCAACTTTTATAATGTCTAATTTTGTGC-CTCGAGTGAGACAAAC
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGT-CTCTTTAATAAGACAAAC
* * ** * * *
11561 TTGAATTGTAGT-A-ACAATCTTCATTCATTTT--GTGATTAGGCACTATAAACATATTCTCCTC
64 ATGAA--G-AGTCATACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTC
* * * * ** *
11622 ATGAGGGTAAACGATATTGATTATTTTCTTTTG
124 ATAAGGATACACGATATTGATGATTTGGTTTCG
* * * * ** ** * * * *
11655 CATGGAAATGTTTCCTTTGC-CCTATTTTCCT-TAAAATCGTAGTTCATTTCCTAAATAAAGGCA
1 CA-AGAAAAGTTTTCTTTGCACCAATTTT--TAT-AAATCAAAGTTTGTCTCTTTAAT-AAGACA
* * *** * * * * * * *
11718 AGCTTTG-ATTCTCATAAC-AGTCTCCATTCTTTTCATGATT--GCGAACAAAAAGCACATTC-C
61 AAC-ATGAAGAGTCAT-ACTA-TCCCCATTCTTTTCAGGATTAGGC-ACCATAAA-CATAGTCTT
* * * * * *
11778 CTTCATTAGGATACATGACATTGACGCTTTGGTGTCG
121 C-TCATAAGGATACACGATATTGATGATTTGGTTTCG
* * * *
11815 TAAGAAAAGCTTTTCTTT-CAACC-GTTTTTGATAGAATTAAAGTTTGTCTCCTTAATAAGACAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTTTT-ATA-AATCAAAGTTTGTCTCTTTAATAAGACAA
*
11878 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
62 ACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* *
11943 ACGGATACACGATATTGACGATTTGGTTTCG
126 AAGGATACACGATATTGATGATTTGGTTTCG
* * * ** * * * * ** *
11974 TAAGAAACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTTTCTCAAATGAGACAAACA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGTCTCTTTAATAAGACAAACA
* * *** * * * ** * *
12039 TG--GATTC-TAGCAAAGATCTTTATTCATTTT-GGGATTAGGCACTACAAACGCATTCTCCTCA
65 TGAAGAGTCATA-C---TATCCCCATTC-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * * * ** *
12100 TTAGGGTAAATGATATTGATGATTTTCTTTTG
125 TAAGGATACACGATATTGATGATTTGGTTTCG
* * ** * ** ** * * * *
12132 CATGAAAATGTTTCCTTTGC-CTTATTTTCCATAAAATCATTGTTCATCCCTTAAATAAGGCAAG
1 CAAGAAAA-GTTTTCTTTGCACCAATTTT-TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
*** * * * * * * *
12196 CATTG-ATTCTCATAAC-AGTCTCCATTCTTTTCATGG-TTTGGAACCAAAAACACATTC-CCTT
63 CA-TGAAGAGTCAT-ACTA-TCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTTC-T
* * * * * * *
12257 CATTA--ATACATGACATTGATGCTTCGGTGTCA
123 CATAAGGATACACGATATTGATGATTTGGTTTCG
* * * *
12289 CAAGAAAAGCTTTTCTTT-CAACC-GTTTCTGATCGAATCAATGTTTGTCTCTTTAATAAGACAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTT-TTAT-AAATCAAAGTTTGTCTCTTTAATAAGACAA
* * * * * *
12352 ACATGAATAGTCATACTAATCCCCATTCTTTTAAGGATTAGGCACTATAAATATTGTTTTC-CTA
62 ACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-A
*
12416 TAAGGATACACGATATTGATGCTTTGGTTTCG
125 TAAGGATACACGATATTGATGATTTGGTTTCG
* * * * * ** *
12448 GAAGAAAGGCTTTCTTTGCACCAATTTTTATAATGTCTAA-TTTGGTGC-CTCAAATGAGA-AAA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTT-GT-CTCTTTAATAAGACAAA
* ** * * * *
12510 GCATGAATTGTAGT-A-ACGATCTTCATTCATTTT--GTGATTAGGCACTATAAACACATTCTCC
63 -CATGAA--G-AGTCATACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTC
* * * * ** *
12571 TCATTAGGGTAAATGATATTGATGATTTTCTTTTG
122 TCATAAGGATACACGATATTGATGATTTGGTTTCG
* * * ** * * ** * * * * * *
12606 CATGGAAATGTTTCCTTTGC-CTTATTTTCCATAAAATCATAGTTCATCCCCTAAATAAGGCGAG
1 CA-AGAAAAGTTTTCTTTGCACCAATTTT-TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
* *** * * * * * *
12670 CGTTG-ATTCTCATAAC-AGTCTCCATTC-TTTCAAGATT-GCGAACCA-AAAGCACATTC-CCT
63 C-ATGAAGAGTCAT-ACTA-TCCCCATTCTTTTCAGGATTAG-GCACCATAAA-CATAGTCTTC-
** * * *
12729 TCATAAGGATACGTGACATTGATGCTTTGGTGTCG
122 TCATAAGGATACACGATATTGATGATTTGGTTTCG
* *
12764 CAAGAAAAGTTTTTCTTT-CA-AACATTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
1 CAAGAAAAG-TTTTCTTTGCACCA-ATTTTT-ATA-AATCAAAGTTTGTCTCTTTAATAAGACAA
* * * * * * * *
12827 ACGTGAATAGTCATACTAATCACCACTCTTTTCAGGATTAGGCACCATAAACATTGTTTTCCCGT
62 ACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * * * *
12892 GAGGATACACAACATTGATGCTTTGGTTTTG
126 AAGGATACACGATATTGATGATTTGGTTTCG
* * * ** * * * * * * * *
12923 TAAGAAACGCTTTCTTCCCCCCAATTTTTATAATGTCTATGTTCGTGTCTTAAATGAGACAAACA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGTCTCTTTAATAAGACAAACA
* ** ** * ** * * *
12988 TG--GATTCTAGTAAAGATCTTCATTCATTTT--GCGATTAGGCACTATAAACGCATTCTCCTCT
65 TGAAGAGTC-A-T-ACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCA
* * * * * **
13049 TTAGGGTAAATGATATTAATGATTTTCTATT-G
125 TAAGGATACACGATATTGATGATTTGGT-TTCG
* * * ** * ** ** * * * *
13081 CATGGAAATGTTTCCTTTGC-CTTATTTTCCATAAAATCATTGTTCATCCCTTAAATAAGGCAAG
1 CA-AGAAAAGTTTTCTTTGCACCAATTTT-TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
** * * * * * * *
13145 C--GTTGATTCCCATAAC-AGTCTCCATTCTTTTCATGG-TTTGGAACCAAAAACACATTC-TCT
63 CATGAAGAGT--CAT-ACTA-TCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTTC-
* ** * * ** *
13205 TCATTAGGATACATAACATCGATGCGTTGGTGTCG
122 TCATAAGGATACACGATATTGATGATTTGGTTTCG
*** * * **
13240 CAAGAAAAGCTTTTCTTT-CAACCGCGTTTGATAGAGTCAAAGTTCATCTCTTTAATAAGACAAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTTTTATA-AATCAAAGTTTGTCTCTTTAATAAGACAAA
* * * * * *
13304 CGTGAATAGTCTTACTAATCCCCATTCTTTTCATGATTAGGCACCTTAAACAGAGT-TTCTCATA
63 CATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
*
13368 AGGATACACGATATTGATGCTTTGGTTTCG
127 AGGATACACGATATTGATGATTTGGTTTCG
* ** * * * ** **
13398 CAAGAAAAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGC-CTCAAATGTGACAAAC
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGT-CTCTTTAATAAGACAAAC
*** * * ** *** * * * * *
13462 ATGAATTCTAGAAAAGATGTTCATTCATTTT--GTGATTAGGCACTATAAACACATTCTCCTTAT
64 ATGAAGAGT-CATACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCAT
* * * * * ** *
13525 TAGGGTAAATGGTATTGATGATTTTCTTTTG
126 AAGGATACACGATATTGATGATTTGGTTTCG
* * * * *** * * *
13556 CATGGAAACA-TTTCCTTTGC-CCTATTTTCCATAAAATCGCTGTTCAT-TC-CTTAAATAGGGC
1 CA-AGAAA-AGTTTTCTTTGCACCAATTTT-TAT-AAATCAAAGTT--TGTCTCTTTAATAAGAC
* *** * * * * * * * *
13617 AAGCATTG-ATTCTCGTAATAGTCACCATTCTTTTCATGG-TTGGGAACCAAAAACA-CGT-TCC
60 AAACA-TGAAGAGTCATACTA-TCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCT-T
* * * * * * * *
13678 CTTCGTTAGGATACATGACATTGATGCTTCGGTGTCA
121 C-TCATAAGGATACACGATATTGATGATTTGGTTTCG
* *
13715 CAAGAAAAGCTTTTCTTT-CAACC-GTTTTTGATAGAAT-AAATGTTTGTCTCTTTAATAAGATA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTTTT-ATA-AATCAAA-GTTTGTCTCTTTAATAAGACA
* * *
13777 AACGTAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
61 AACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * *
13842 TAAGGATACACGATACTGACGCTTTGGTTTCG
125 TAAGGATACACGATATTGATGATTTGGTTTCG
* * * * * * ** * *
13874 CAAGAAAGGCTTTCTTTTCACCAATTTTTAGAATGTCTAAGTTTGTGC-CTCAAATGAGAAAAAC
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGT-CTCTTTAATAAGACAAAC
* * * ** * * * * *
13938 A--AGGATTCTAGTAATCATCTTCATTATTTT--GTGATTAGGCACTATAAACACATTCTCCTCA
64 ATGAAGAGTC-A-TACT-ATCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCA
* * * * * *
13999 TGAAGG-TAAATGATGTGGATGATTT-TTTTTG
125 T-AAGGATACACGATATTGATGATTTGGTTTCG
* * * * * ** * * *
14030 CATGGAAATGTTTCCTTTG-TCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGGCAA
1 CA-AGAAAAGTTTTCTTTGCACCAATTTT--TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAA
* * *** * * * * * * * * * *
14093 GCGTTG-ATTTTCCTACCAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTC-CCTTC
62 AC-ATGAAGAGTCATACTA-TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TC
* ** * * * * *
14156 ATTAGGATACTTGACATTGACGCTTGGGTGTCG
124 ATAAGGATACACGATATTGATGATTTGGTTTCG
* ** * *
14189 CAAGAATAGCTTTTCTTT-CAACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTTTTATA-AATCAAAGTTTGTCTCTTTAATAAGACAAA
** * * *
14253 CACAAATAGACATACTAGTCCCCATTCTTTTCAGGATTCGGCACCATAAACATAGTCTTCTCATA
63 CATGAAGAGTCATACTA-TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
* * * *
14318 AGGATACACGATGTTAACGCTTTGGTTTCG
127 AGGATACACGATATTGATGATTTGGTTTCG
* * * ** * * * * * * **
14348 TAAGAAAGGCTTTCTTCCCACCGATTTTCACAATGTCTAAGTTCT-TCCCTCAAATGAA-ACAAA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTT-TGTCTCTTTAAT-AAGACAAA
* * ** * * * * * *
14411 CATG--GATTCTAGTAATGATCTTCATTCAATTT--GTGATTAGGCACTATAAACACATTATCCT
63 CATGAAGAGTC-A-TACT-ATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCT
* * * * * ** *
14472 CATTAGGGTAAATGGTATTGATGATTTTCTTTTG
123 CATAAGGATACACGATATTGATGATTTGGTTTCG
** * * * * ** * ** * * * * *
14506 CGTGGAAATGTTTCCTTTGC-CCTATTTTCCATAAAATCATTGCTCATCCCTTAAATTAGGCAAG
1 C-AAGAAAAGTTTTCTTTGCACCAATTTT-TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
* *** * * * * * * *
14570 CGTTG-ATTCTCATAAC-AGTCACCATTCTTTTCACGG-TTGGGAACCAAAAACACATTC-CCTT
63 C-ATGAAGAGTCAT-ACTA-TCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTTC-T
* * * * * * *
14631 CATTAGGATACATGACACTGATGCTTTAGTGTCG
123 CATAAGGATACACGATATTGATGATTTGGTTTCG
* * * *
14665 CAAGAAAAGCTTTTCTTTGAACC-GTTTTTGATGAAATCAACGTTTGTCTCTCTAATAAGACAAA
1 CAAGAAAAG-TTTTCTTTGCACCAATTTTT-AT-AAATCAAAGTTTGTCTCTTTAATAAGACAAA
* * *
14729 -AGTGAATAGTCTTACCAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG---TCTCAT
63 CA-TGAAGAGTCATA-CTATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * * * *
14790 AAGGATTCACGATTTTGACGCTTTGGGTTCG
126 AAGGATACACGATATTGATGATTTGGTTTCG
* * * ** *
14821 CAAGAAAGGCTTTCTTCT-CACCAATTTTTATAATGTCAAAGTTCT-TGC-CTCAAATGAGACAA
1 CAAGAAAAGTTTTCTT-TGCACCAATTTTTATAA-ATCAAAGTT-TGT-CTCTTTAATAAGACAA
* ** ** * * * * *
14883 ACATG--GATTCTAGTAAAGATCTTCACTCATTTT--GTGATTAGGCACTATAAACACATTCTCC
62 ACATGAAGAGTC-A-T-ACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTC
* * * **
14944 TCA-ATAGGGTAAATGATATTGATGACTTTCATTT-G
122 TCATA-AGGATACACGATATTGATGA-TTTGGTTTCG
* * * * ** * * * *
14979 CATGGAAATGTTTCCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAAAAAGGCAA
1 CA-AGAAAAGTTTTCTTTGCACCAATTTT--TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAA
* *** * * * * * * *
15042 GCATTG-ATTCTCGA-ACCAGTCTCCATTCTTTTCATGACT-GAGAACCATAAACACATTCCCTT
62 ACA-TGAAGAGTC-ATACTA-TCCCCATTCTTTTCAGGATTAG-GCACCATAAACATAGT--CTT
* * * **
15104 -T-ATTAGGATACTTC-ACATTGAT-ACTTTGGAGTCG
121 CTCATAAGGATAC-ACGATATTGATGA-TTTGGTTTCG
* * * * *
15138 CAAGAAAACCTTTTCTTT-CAACC-GTTTTTGATAGAATCAAAGTTTGTCACCTTAATAAAACAA
1 CAAGAAAA-GTTTTCTTTGC-ACCAATTTTT-ATA-AATCAAAGTTTGTCTCTTTAATAAGACAA
* * ** * * *
15201 ACGTGAATAGTCATACTAATCCCTTTTCTTTTCAAGATTAGGCGCCATAAACATTGTCTTC-CTA
62 ACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-A
* *
15265 TAAGGATACACGATATTGACGCTTTGGTTTCG
125 TAAGGATACACGATATTGATGATTTGGTTTCG
* * * * ** ** * * * ** *
15297 TAGGGAACGCTTTT-TTCCCACCAATTTTTATCATGTCTAAGTTCGTGTCTCAAATGAGACAAAC
1 CAAGAAAAG-TTTTCTTTGCACCAATTTTTAT-AAATCAAAGTTTGTCTCTTTAATAAGACAAAC
* ** *** * * ** * ** *
15361 ATG--GATTCTAGTAAAGATGTTCATTCATTTT--GTTATTAGGCACTATAAACGCATTCCCCTT
64 ATGAAGAGTC-A-T-ACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTC
* * * * * *
15422 ATTAGGGTAAATGATATTGATGATTTTGTTTTG
124 ATAAGGATACACGATATTGATGATTTGGTTTCG
** * * ** * * ** ** * * * *
15455 CGTGGAAATGTTTCCTTTGC-CTTATTTTCCAAAAAATCATTGTTCATCCCTTAAATAAGGCAAG
1 C-AAGAAAAGTTTTCTTTGCACCAATTTT--TATAAATCAAAGTTTGTCTCTTTAATAAGACAAA
* *** * * * * * * * *
15519 CGTTG-ATTCTCGTAAC-AGTCTCCATTCTTTTCATGGCTT-GGAACCAAAAACACATTC-CCTT
63 C-ATGAAGAGTCAT-ACTA-TCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTTC-T
* * * * * *
15580 CATTAGGATACATGACATCGATGCTTTGGTGTCG
123 CATAAGGATACACGATATTGATGATTTGGTTTCG
* * **
15614 AAAGAAAAGCTTTTCTTT-CAACTGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAA
1 CAAGAAAAG-TTTTCTTTGCACCAATTTTT-ATA-AATCAAAGTTTGTCTCTTTAATAAGACAAA
* * * * * *
15678 TATGAATAGCCTTACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATTGTCTTCTCATA
63 CATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
* *
15743 AGGATACACGATATTGATGCTTTGGTTTTG
127 AGGATACACGATATTGATGATTTGGTTTCG
* * * * * * * * ** * *
15773 GAAGAAAGGCTTTCTTCGCACCAACTTTTATAATGTCTAATTTTGTGC-CTCGAGTGAGACAAAC
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA-ATCAAAGTTTGT-CTCTTTAATAAGACAAAC
* * ** * * * *
15837 TTGAATTGTAGT-A-ACAATCTTCATTCATTTT--GTGATTAGGCACTATAAACATATTCTCCTT
64 ATGAA--G-AGTCATACTATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTC
* * * * ** *
15898 ATTAGGGTAAACGATATTGATTATTTTCTTTTG
124 ATAAGGATACACGATATTGATGATTTGGTTTCG
* * * * ** ** * * * *
15931 CATGGAAATGTTTCCTTTGC-CCTATTTTCCT-TAAAATCGTAGTTCATTTCCTAAATAAGGCAA
1 CA-AGAAAAGTTTTCTTTGCACCAATTTT--TAT-AAATCAAAGTTTGTCTCTTTAATAAGACAA
* * *** * * * * * * *
15994 GCTTTG-ATTCTCATAAC-AGTCTCCATTCTTTTCATGATT-GCGAACTA-AAAGCACATTC-CC
62 AC-ATGAAGAGTCAT-ACTA-TCCCCATTCTTTTCAGGATTAG-GCACCATAAA-CATAGTCTTC
* * * * *
16054 TTCATAAGGATACATGACATTGACGCTTTGGTGTCG
122 -TCATAAGGATACACGATATTGATGATTTGGTTTCG
* * *
16090 TAAGAAAAGCTTTTCTTT-CAACC-GTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
1 CAAGAAAAG-TTTTCTTTGC-ACCAATTTTT-ATA-AATCAAAGTTTGTCTCTTTAATAAGACAA
* * * *
16153 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTACGCACCATAAACATTGTCTTCCCAT
62 ACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
*
16218 AAGGATACACGATATTGACGATTTGGTTTCG
126 AAGGATACACGATATTGATGATTTGGTTTCG
** * * **
16249 TTAGAAACGCTTTCTTCCCACCAATTTTTATAA
1 CAAGAAAAGTTTTCTTTGCACCAATTTTTATAA
16282 TGTCTAAGTT
Statistics
Matches: 7496, Mismatches: 2529, Indels: 1560
0.65 0.22 0.13
Matches are distributed among these distances:
153 9 0.00
154 10 0.00
155 180 0.02
156 261 0.03
157 515 0.07
158 2480 0.33
159 3569 0.48
160 388 0.05
161 66 0.01
162 13 0.00
163 5 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (156 bp):
CAAGAAAAGTTTTCTTTGCACCAATTTTTATAAATCAAAGTTTGTCTCTTTAATAAGACAAACAT
GAAGAGTCATACTATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
TACACGATATTGATGATTTGGTTTCG
Found at i:7636 original size:159 final size:161
Alignment explanation
Indices: 6998--16681 Score: 831
Period size: 159 Copynumber: 61.1 Consensus size: 161
6988 TTCATTTTGT
* * * *
6998 GATTAGGCACTATAAACACATTCTCCTCAAT-AGGGTAAATGATATTGATGATTTTCTTTTGCAT
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-G
* * * *
7062 GA-AAATGTTTTCTTTGC-CTTATTTTCCATAAAATCATAGTTTATC-CCTTAAATAAGGCAAGA
65 GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAA-A
** ** * * * * *
7124 GTTG-ATTCTCGTAACAGTCTCCATTGTTTTCAT
128 CATGAATAGTCATAACAATCCCCATTCTTTTCAG
* * * * * ** * **
7157 GATTAGGAACCAAAAACACATTC-CCTTCATT-AGGATACATGACATTGATGCTTTGGTGTCAC-
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * ** * * *
7219 AAGAAAAGCTTTTCTTT-CAACC-ATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGATAAA
65 GAGAAATG-TTTTCTTTGC-ACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACAAA
* *
7282 CATGAAGAGTCAT-ACTATCCCCATTCTTTTCAG
128 CATGAATAGTCATAACAATCCCCATTCTTTTCAG
* * * * * * * **
7315 GATTAGGCCCCATAAACATAGTCTTCTCA-TAAGGATACACGATATTGATG-CTTTGGTTT-CGG
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCGG
* * * ** * * * *
7377 AAGAAAGGTTTTCTTTGCACCAATTTT-TATAATGTCCAA-TTTGGT-GCCTCAAATGAGACAAA
66 -AGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTT-GTCTCCT-TAATAAGACAAA
* * **
7439 CATGAATTGT-AGTAACGATCTTCATTCATTTT--G
128 CATGAATAGTCA-TAACAATCCCCATTC-TTTTCAG
*
7472 TGATTAGGCACTATAAACACATTCTCCTCATTAAGG-TAAATGATATTGATGATTTTCTTTTGCG
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * *
7536 GGGAAATGTTTCCTTTGC-CCTATTTTCCAAAAAATCAAAGTTTGTCTCCTTAATAAGACAAACA
65 GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACAAACA
7600 TGAATAGTCAT-ACTAATCCCCATTCTTTTCAG
130 TGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * **
7632 GATTAGGTACCATAAACA-TTGTCTTCC-CA-TAAGGATACACGATATTGACGA-TTTGGTTT-C
1 GATTAGGCACCATAAACACAT-TC-TCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC
* * * ** * * ** * * * * *
7692 GTAAGAAACGCTTTCTTCCCACCAATTTT-TATAATGTCTAAGTTCGT-TTCTCAAATGAGACAA
64 G-GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCT-TAATAAGACAA
* ***
7755 ACATGGAT--TCTAGTAA-AGATCTTTATTCATTTT--G
127 ACATGAATAGTC-A-TAACA-ATCCCCATTC-TTTTCAG
* * * *
7789 TGATTAGGCACTACAAACGCATTCTCCTCATT-AGGGTAAATGATATTGATGATTTTCTTTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * ** ** * *
7853 TGA-AAATGTTTCCTTTGC-CTTATTTTCCATAAAATCATTGTTCATC-CCTTAAATAAGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
** * *
7915 CATTG-ATTCTCATAACAGTCTCCATTCTTTTCATG
128 CA-TGAATAGTCATAACAATCCCCATTCTTTTCA-G
* * * * * * *** * **
7950 G-TTTGGAACCAAAAACACATTC-CCTTCATT-AGGATACATGACATTGATGCTTCGGTGTCAC-
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * ** * *
8011 AAGAAAAGCTTTTCTTT-CAACC--GTTTCTGATCGAATCAATGTTTGTCTCTTTAATAAGACAA
65 GAGAAATG-TTTTCTTTGC-ACCTATTTTC-CATAAAATCAAAGTTTGTCTCCTTAATAAGACAA
*
8073 ACATGAATAGTCAT-ACTAATCCCCATTCTTTTAAG
127 ACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * * **
8108 GATTAGGCACCATAAATATTATTTTCCT-A-TAAGGATACACGATATTGATG-CTTTGGTTT-CG
1 GATTAGGCACCATAAACA-CATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * ** * * *
8169 GAAGAAAGGCTTTCTTTGCACCAATTTT-TATAATGTCTAA-TTTGGT-GCCTTAAATGAGA-AA
65 G-AGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTT-GTCTCCTT-AATAAGACAA
* * * **
8230 AGCATGAAT-TTTAGTAACGATCTTCATTCATTTT--G
127 A-CATGAATAGTCA-TAACAATCCCCATTC-TTTTCAG
* *
8265 TGATTAGGCACTATAAACACATTCTCCTCATT-AGGGTAAATGATATTGATGATTTTCTTTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * ** * * * * *
8329 TG-GAAATG-TTTCTTTTGC-CTTATTTTCCATAAAATCATAGTTCATCCCCTAAATAAGGCGAG
64 GGAGAAATGTTTTC-TTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACAAA
* ** * * *
8391 CGTTG-ATTCTCATAACAGTCTCCATTCTTTTCAA
128 C-ATGAATAGTCATAACAATCCCCATTCTTTTCAG
* ** * * ** * *
8425 GATT-GCGAACCA-AAAGCACATTC-CCTTCA-TAAGGATATGTGACATTGATGCTTTGGTGTCG
1 GATTAG-GCACCATAAA-CACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTG
* * * ** * *
8486 C-AAGAAAAGTTTTTCTTT-CAAAC-ATTTTTGATAGAATCAAAGTTTATCTCCTTAATAAGACA
63 CGGAGAAATG-TTTTCTTTGC-ACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACA
* * *
8548 AACGTGAATAGTCAT-ACTAATCACCACTCTTTTCAG
126 AACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
** * * * * ** * * ** *
8584 GATTAGGCACCATAAACATTGTTTTCCT--GTGAGGATACACAACATTGATGCTTTGGTTTTG-T
1 GATTAGGCACCATAAACA-CATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * * * * ** * * * *
8646 AAGAAACGCTTTCTTTCCCCCAATTTT-TATAATGTCTAAGTTCGTGT-CTTAAATGAGACAAAC
65 GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAAC
* * ***
8709 ATGGAT--TCTAGTAAAAATCTTGATTCATTTT--G
129 ATGAATAGTC-A-TAACAATCCCCATTC-TTTTCAG
* * * * *
8741 CGATTAGGCACTATAAACGCATTCTCCTC-TTTAGGGTAAATGATATTGATGATTTTCTATTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * * ** * * * *
8805 TG-GAAATGTTTCCTTTGC-CTTATTTTCGATAAAATCATTGTTTATC-CCTTAAATATGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
* *** * *
8867 CGTTG-ATTCCCATAACAGTCTCCATTCTTTTCATG
128 C-ATGAATAGTCATAACAATCCCCATTCTTTTCA-G
* * * * * * ** ** * * *
8902 G-TTTGGAACCAAAAACACATTCTCTTCATT-AGGATACATGACATTGATGCGTTGGTGTCGC-A
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCGG
* *** * * * ** * *
8964 AGAAAAGCTTTTCTTT-CAACCGCGTTT-GATAGAGTCAAAGTTCATCTCTTTAATAAGACAATC
66 AGAAATG-TTTTCTTTGC-ACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACAAAC
* * *
9027 GTGAATAGTC-TTACTAATCCCCATTCTTTTCAT
129 ATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * * ** *
9060 GATTAGGCACCTTAAACATAGTT-TTCTCA-TAAGGATACACGATATTGATGCTTTGGTTTCGC-
1 GATTAGGCACCATAAACACA-TTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * ** * * ** * * * * **
9122 AAGAAAAGCTTTCTTCCCACCAATTTT-TATAATGTCTAAGTTCGT-GCCTCAAATGTGACAAAC
65 GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCT-TAATAAGACAAAC
* * ***
9185 ATGAAT--TCTAGAAAAGATGTTCATTCATTTT--G
129 ATGAATAGTC-ATAACA-ATCCCCATTC-TTTTCAG
* * * *
9217 TGATTAGGCACTATAAACACATTCTCCTTATT-AGGGTAAATGGTATTGATGATTTTCTTTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* ** * **** ** * *
9281 TG-GAAACATTTCCTTTGC-CCTATTTTCCATAAAATTGTTGTTCAT-TCCTTAAATAAGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
** * * *
9343 CATTG-ATTCTCATAATAGTCACCATTCTTTTCATG
128 CA-TGAATAGTCATAACAATCCCCATTCTTTTCA-G
* * * * * * * * *** * **
9378 G-TTGGGAACCAAAAACACGTTC-CCTTCGTT-AGGATACATGACATTGATGCTTCGGTGTCAC-
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * * * *
9439 AAGAAAAGCTTTTCTTT-CAACC--GTTTCTGATAGAATCAATGTTTGTCTCTTTAATAAGACAA
65 GAGAAATG-TTTTCTTTGC-ACCTATTTTC-CATAAAATCAAAGTTTGTCTCCTTAATAAGACAA
* * *
9501 ACGTGAATAGTTAT-ACTAATCCCCATTCTTTTCAA
127 ACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * * * * **
9536 GATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATACTGATGCTTTAGC-TTCAC-
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTT-TCTTTTGCG
* * * * * * ** * * * *
9598 AAGAAAGGCTTTCTTTTCACCAATTTT-TATAATGTCTAAGTTTGT-GCCTCAAATCAA-AAAAA
65 GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCT-TAAT-AAGACAAA
* * ** *
9660 CACGGAT--TCTAGTAATC-ATCTTCATTATTTT--G
128 CATGAATAGTC-A-TAA-CAATCCCCATTCTTTTCAG
* * * * * *
9692 TGATTAGGCACTACAAACACATTCTCCTCA-TGAGGGTAAATGATGTTGATGATTTTTTTTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * ** * *
9756 TG-GAAATGTTTCCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATC-CCTTAAATAAGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
* ** * * * * *
9818 CGTTG-ATTTTCCTACCAGTCTCCATTCTTTTCAT
128 C-ATGAATAGTCATAACAATCCCCATTCTTTTCAG
* * * ** * * * *** * *
9852 GATTGGGAACCAAAAACACATTC-CCTTCATT-AGGATACTTGACATTGACGCTTGGGTGTCGC-
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* ** * *
9914 AAG-AATAGCTTTTCTTT-CAACC-ATTTTTTATAGAATCAAAGTTTATCT-CTTAAATAAGACA
65 GAGAAAT-G-TTTTCTTTGC-ACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACA
** * *
9975 AACACAAATAGACAT-ACTAGTCCCCATTCTTTTCAG
126 AACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * * * * * * **
10011 GATTCGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATGTTAACG-CTTTGGTTT-CGT
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG-
* * * ** * * * * * *
10073 AAGAAAGGCTTTCTTCCCACCGATTTT-CACAAAGTCTAAGTTCT-TC-CCTCAAATGAGACAAA
65 GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTT-TGTCTCCT-TAATAAGACAAA
* ** ** *
10135 CATGGAT--TCTAGTAATGATCTTCATTCAATTT--G
128 CATGAATAGTC-A-TAACAATCCCCATTC-TTTTCAG
* * *
10168 TGATTAGGCACTATAAACACATTATCCTCATT-AGGGTAAATGGA-ATTGATGATTTTCTTTTGC
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAAT-GATATTGATGATTTTCTTTTGC
* ** * ** *
10231 GTG-GAAATGTTTCCTTTGC-CCTATTTTCCATAAAATCATTGCTCATC-CCTTAAATAAGGCAA
64 G-GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAA
* * ** * *
10293 GCGTTG-ATTCTCATAACAGTCACCATTCTTTTCACG
127 AC-ATGAATAGTCATAACAATCCCCATTCTTTTCA-G
* * * * * * * ** * *
10329 G-TTGGGAACCAAAAACACATTC-CCTTCATT-AGGATACATGACACTGATGCTTTAATGTCGC-
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * ** *
10390 AAGAAAAGCTTTTCTTTGAACCGT-TTTT-GATGGAATCAACGTTTGTCT-CTCTAATAAGACAA
65 GAGAAATG-TTTTCTTTGCACC-TATTTTCCATAAAATCAAAGTTTGTCTCCT-TAATAAGACAA
* * *
10452 A-AGTGAATAGTCTTACCAATCCCCATTCTTTTTAG
127 ACA-TGAATAGTCATAACAATCCCCATTCTTTTCAG
* ** ** * * * * *** * *
10487 GATTAGACACCAT-AA-ACATAGT-CTCA-TAAGGATTCACGATTTTGACGCTTTGGGTTCGC-A
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCGG
* * * * ** * * *
10547 AGAAAGGCTTTCTTCT-CACCAATTTT-TATAATGTCAAAGTTCATGCCT-C-AAATGAGACAAA
66 AGAAATGTTTTCTT-TGCACCTATTTTCCATAAAATCAAAGTT--TGTCTCCTTAATAAGACAAA
* **
10608 CATGGAT--TCTAGTAA-AGATCTTCATTCATTTT--G
128 CATGAATAGTC-A-TAACA-ATCCCCATTC-TTTTCAG
* * * *
10641 TGATTAGGCACTATAAACACATTCTCCTCAAT-AGGGTAAATGATATTGATGATTTTCATTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * ** ** * * *
10705 TGA-AAATGTTTCCTTTGC-CCTA-TTTCTTTAAAATCAAAGTTCATC-CCTTAAAAAAGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
** * * *
10766 CATTG-ATTCTCGA-ACCAATCTCCATTCTTTTCAT
128 CA-TGAATAGTC-ATAACAATCCCCATTCTTTTCAG
* * * * ** * * * ****
10800 GACT-GAGAACCAAAAACACATTC-CCTTTATT-AGGATACTTCAGATTGAT-ACTTTGGAGT-C
1 GATTAG-GCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGC
** ** * * *
10860 ACAAGAAAACCTTTTCTTT-CAACCGT-TTTT-GATAGAATCAAAGTTTGTCTCCTTAATAAAAC
64 -GGAG-AAATGTTTTCTTTGC-ACC-TATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGAC
* * * *
10922 AAACGTGAATAATCAT-ACTAATCCCCTTTTCTTTTCAA
125 AAACATGAATAGTCATAAC-AATCCCC-ATTCTTTTCAG
* * * * * * **
10960 GATTAGGCGCCATAAACA-TTGTCTTCCT-A-TAAGGATACACGACATTGATG-CTTTGGTTT-C
1 GATTAGGCACCATAAACACAT-TC-TCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * ** * * * ** * * *
11020 GTAGGGAACGCTTTCTTCCCACCAATTTT-TATCATGTCTAAGTTCGTGTCT-C-AAATGAGACA
64 GGA-GAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTT--TGTCTCCTTAATAAGACA
* ** *
11082 AACATGGAT--TCTAGTAA-AGATCTTCATT-TATTT-TG
126 AACATGAATAGTC-A-TAACA-ATCCCCATTCT-TTTCAG
* * * * *
11117 TGATTAGGCACTATAAACGCATTCCCCTCATT-AGGGTAAATGATATTGATGATTTTGTTTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * * ** ** * *
11181 TG-GAAATGTTTCCTTTGC-CTTATTTTCCAAAAAATCATTGTTCATC-CCTTAAATAAGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
* * ** * *
11243 CGTTGATTCTTC-TAACAGTCTCCATTCTTTTCATG
128 C-ATGAATAGTCATAACAATCCCCATTCTTTTCA-G
* * * * * * * * ** *
11278 GCTT-GGAACTAAAAACACATTC-CCTTCATT-AGGATACATGACATCGATG-CTTTGGTGT-CG
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * ** * *
11338 AAAGAAAAGCTTTTCTTT-CAAC-AGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAA
65 -GAGAAATG-TTTTCTTTGCACCTA-TTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACAA
* * * *
11401 ATATGAATAG-CCTTACTAATCCCCATTCTTTTTAG
127 ACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * * * ** *
11436 GATTAGGCACCATAAACATAGTCTTCTCAAT-AGGATACACGATATTGATGCTTTGGTTTTG-GA
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCGG
* * * * ** * * * * * *
11499 AGAAAGGCTTTCTTCGCACCAACTTTT--ATAATGTCTAATTTTGT-GCCTCGAGTGAGACAAAC
66 AGAAATGTTTTCTTTGCACCTA-TTTTCCATAAAATCAAAGTTTGTCTCCT-TAATAAGACAAAC
* * **
11561 TTGAATTGT-AGTAACAATCTTCATTCATTTT--G
129 ATGAATAGTCA-TAACAATCCCCATTC-TTTTCAG
* * * * * *
11593 TGATTAGGCACTATAAACATATTCTCCTCA-TGAGGGTAAACGATATTGATTATTTTCTTTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * ** ** * * * *
11657 TG-GAAATGTTTCCTTTGC-CCTATTTTCCTTAAAATCGTAGTTCATTTCCTAAATAAAGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAAT-AAGACAAA
* ** * * *
11720 CTTTG-ATTCTCATAACAGTCTCCATTCTTTTCAT
128 C-ATGAATAGTCATAACAATCCCCATTCTTTTCAG
* * * * * * ** *
11754 GATT--GCGAACAAAAAGCACATTC-CCTTCATT-AGGATACATGACATTGACG-CTTTGGTGT-
1 GATTAGGC-ACCATAAA-CACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTG
* * * * *
11813 CGTAAGAAAAGCTTTTCTTT-CAACCGT-TTTT-GATAGAATTAAAGTTTGTCTCCTTAATAAGA
63 CG-GAGAAATG-TTTTCTTTGC-ACC-TATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGA
11875 CAAACATGAATAGTCAT-ACTAATCCCCATTCTTTTCAG
124 CAAACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * * * **
11913 GATTAGGCACCATAAACATAGTCTTCTCA-TACGGATACACGATATTGACGA-TTTGGTTT-CGT
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG-
* * * ** * * ** * * * * *
11975 AAGAAACGCTTTCTTCCCACCAATTTT-TATAATGTCTAAGTTCGT-TTCTCAAATGAGACAAAC
65 GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCT-TAATAAGACAAAC
* * *** *
12038 ATGGATTCTAG-CA-AA-GATCTTTATTCATTTT-GG
129 AT-GA--ATAGTCATAACAATCCCCATTC-TTTTCAG
* * * * *
12071 GATTAGGCACTACAAACGCATTCTCCTCATT-AGGGTAAATGATATTGATGATTTTCTTTTGCAT
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-G
* * ** ** * *
12135 GA-AAATGTTTCCTTTGC-CTTATTTTCCATAAAATCATTGTTCATC-CCTTAAATAAGGCAAGC
65 GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAAC
** * *
12197 ATTG-ATTCTCATAACAGTCTCCATTCTTTTCATG
129 A-TGAATAGTCATAACAATCCCCATTCTTTTCA-G
* * * * * * *** * **
12231 G-TTTGGAACCAAAAACACATTC-CCTTCATT-A--ATACATGACATTGATGCTTCGGTGTCAC-
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * ** * *
12290 AAGAAAAGCTTTTCTTT-CAACC--GTTTCTGATCGAATCAATGTTTGTCTCTTTAATAAGACAA
65 GAGAAATG-TTTTCTTTGC-ACCTATTTTC-CATAAAATCAAAGTTTGTCTCCTTAATAAGACAA
*
12352 ACATGAATAGTCAT-ACTAATCCCCATTCTTTTAAG
127 ACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * ** * * * * **
12387 GATTAGGCACTATAAATATTGTTTTCCT-A-TAAGGATACACGATATTGATG-CTTTGGTTT-CG
1 GATTAGGCACCATAAACA-CATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * ** * * * *
12448 GAAGAAAGGCTTTCTTTGCACCAATTTT-TATAATGTCTAA-TTTGGT-GCCTCAAATGAGA-AA
65 G-AGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTT-GTCTCCT-TAATAAGACAA
* * **
12509 AGCATGAATTGT-AGTAACGATCTTCATTCATTTT--G
127 A-CATGAATAGTCA-TAACAATCCCCATTC-TTTTCAG
* *
12544 TGATTAGGCACTATAAACACATTCTCCTCATT-AGGGTAAATGATATTGATGATTTTCTTTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * * ** * * * * *
12608 TG-GAAATGTTTCCTTTGC-CTTATTTTCCATAAAATCATAGTTCATCCCCTAAATAAGGCGAGC
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACAAAC
* ** * * *
12671 GTTG-ATTCTCATAACAGTCTCCATTC-TTTCAA
129 -ATGAATAGTCATAACAATCCCCATTCTTTTCAG
* ** * * ** * *
12703 GATT-GCGAACCA-AAAGCACATTC-CCTTCA-TAAGGATACGTGACATTGATGCTTTGGTGTCG
1 GATTAG-GCACCATAAA-CACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTG
* * * ** *
12764 C-AAGAAAAGTTTTTCTTT-CAAAC-ATTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACA
63 CGGAGAAATG-TTTTCTTTGC-ACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACA
* * *
12826 AACGTGAATAGTCAT-ACTAATCACCACTCTTTTCAG
126 AACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
** * * * * ** * * ** *
12862 GATTAGGCACCATAAACATTGTTTTCC-C-GTGAGGATACACAACATTGATGCTTTGGTTTTG-T
1 GATTAGGCACCATAAACA-CATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * ** * * * ** * * * * *
12924 AAGAAACGCTTTCTTCCCCCCAATTTT-TATAATGTCTATGTTCGTGT-CTTAAATGAGACAAAC
65 GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAAC
* **
12987 ATGGAT--TCTAGTAA-AGATCTTCATTCATTTT--G
129 ATGAATAGTC-A-TAACA-ATCCCCATTC-TTTTCAG
* * * * * *
13019 CGATTAGGCACTATAAACGCATTCTCCTC-TTTAGGGTAAATGATATTAATGATTTTCTATTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * ** ** * *
13083 TG-GAAATGTTTCCTTTGC-CTTATTTTCCATAAAATCATTGTTCATC-CCTTAAATAAGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
* *** * *
13145 CGTTG-ATTCCCATAACAGTCTCCATTCTTTTCATG
128 C-ATGAATAGTCATAACAATCCCCATTCTTTTCA-G
* * * * * * * * ** ** * * *
13180 G-TTTGGAACCAAAAACACATTCTCTTCATT-AGGATACATAACATCGATGCGTTGGTGTCGC-A
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCGG
* *** * * * ** *
13242 AGAAAAGCTTTTCTTT-CAACCGCGTTT-GATAGAGTCAAAGTTCATCTCTTTAATAAGACAAAC
66 AGAAATG-TTTTCTTTGC-ACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACAAAC
* * *
13305 GTGAATAGTC-TTACTAATCCCCATTCTTTTCAT
129 ATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * ** *
13338 GATTAGGCACCTTAAACAGAGTT-T-CTCA-TAAGGATACACGATATTGATGCTTTGGTTTCGC-
1 GATTAGGCACCATAAACACA-TTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * ** * * ** * * * * **
13399 AAGAAAAGCTTTCTTCCCACCAATTTT-TATAATGTCTAAGTTCGT-GCCTCAAATGTGACAAAC
65 GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCT-TAATAAGACAAAC
* * ***
13462 ATGAAT--TCTAGAAAAGATGTTCATTCATTTT--G
129 ATGAATAGTC-ATAACA-ATCCCCATTC-TTTTCAG
* * * *
13494 TGATTAGGCACTATAAACACATTCTCCTTATT-AGGGTAAATGGTATTGATGATTTTCTTTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* ** * *** ** * * *
13558 TG-GAAACATTTCCTTTGC-CCTATTTTCCATAAAATCGCTGTTCAT-TCCTTAAATAGGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
** * * * *
13620 CATTG-ATTCTCGTAATAGTCACCATTCTTTTCATG
128 CA-TGAATAGTCATAACAATCCCCATTCTTTTCA-G
* * * * * * * * *** * **
13655 G-TTGGGAACCAAAAACACGTTC-CCTTCGTT-AGGATACATGACATTGATGCTTCGGTGTCAC-
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * * *
13716 AAGAAAAGCTTTTCTTT-CAACCGT-TTTT-GATAGAAT-AAATGTTTGTCTCTTTAATAAGATA
65 GAGAAATG-TTTTCTTTGC-ACC-TATTTTCCATAAAATCAAA-GTTTGTCTCCTTAATAAGACA
* *
13777 AACGTAAATAGTCAT-ACTAATCCCCATTCTTTTCAG
126 AACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * * * * ** * *
13813 GATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATACTGACGCTTTGGTTTCGC-A
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCGG
* * * * * * ** * * * * *
13876 AGAAAGGCTTTCTTTTCACCAATTTT-TAGAATGTCTAAGTTTGT-GCCTCAAATGAGAAAAACA
66 AGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCT-TAATAAGACAAACA
* * ** *
13939 AGGAT--TCTAGTAATC-ATCTTCATTATTTT--G
130 TGAATAGTC-A-TAA-CAATCCCCATTCTTTTCAG
* * * *
13969 TGATTAGGCACTATAAACACATTCTCCTCATGAAGG-TAAATGATGTGGATGATTTT-TTTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * * ** * *
14032 TG-GAAATGTTTCCTTTG-TCCTATTTTCCTTAAAATCAAAGTTCATC-CCTTAAATAAGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
* ** * * * * *
14094 CGTTG-ATTTTCCTACCAGTCTCCATTCTTTTCAT
128 C-ATGAATAGTCATAACAATCCCCATTCTTTTCAG
* * * ** * * * *** * *
14128 GATTGGGAACCAAAAACACATTC-CCTTCATT-AGGATACTTGACATTGACGCTTGGGTGTCGC-
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * *
14190 AAG-AATAGCTTTTCTTT-CAACCGT-TTTT-TATAGAATCAAAGTTTATCT-CTTAAATAAGAC
65 GAGAAAT-G-TTTTCTTTGC-ACC-TATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGAC
** * *
14250 AAACACAAATAGACAT-ACTAGTCCCCATTCTTTTCAG
125 AAACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * * * * * * **
14287 GATTCGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATGTTAACG-CTTTGGTTT-CGT
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG-
* * * ** * * ** * *
14349 AAGAAAGGCTTTCTTCCCACCGATTTT-CACAATGTCTAAGTTCT-TC-CCTCAAATGAA-ACAA
65 GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTT-TGTCTCCT-TAAT-AAGACAA
* ** ** *
14410 ACATGGAT--TCTAGTAATGATCTTCATTCAATTT--G
127 ACATGAATAGTC-A-TAACAATCCCCATTC-TTTTCAG
* * * *
14444 TGATTAGGCACTATAAACACATTATCCTCATT-AGGGTAAATGGTATTGATGATTTTCTTTTGCG
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* ** * ** * * *
14508 TG-GAAATGTTTCCTTTGC-CCTATTTTCCATAAAATCATTGCTCATC-CCTTAAATTAGGCAAG
65 -GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
* ** * *
14570 CGTTG-ATTCTCATAACAGTCACCATTCTTTTCACG
128 C-ATGAATAGTCATAACAATCCCCATTCTTTTCA-G
* * * * * * * ** * *
14605 G-TTGGGAACCAAAAACACATTC-CCTTCATT-AGGATACATGACACTGATGCTTTAGTGTCGC-
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * * *
14666 AAGAAAAGCTTTTCTTTGAACCGT-TTTT-GATGAAATCAACGTTTGTCT-CTCTAATAAGACAA
65 GAGAAATG-TTTTCTTTGCACC-TATTTTCCATAAAATCAAAGTTTGTCTCCT-TAATAAGACAA
* *
14728 A-AGTGAATAGTCTTACCAATCCCCATTCTTTTCAG
127 ACA-TGAATAGTCATAACAATCCCCATTCTTTTCAG
** ** * * * * *** * *
14763 GATTAGGCACCAT-AA-ACATAGT-CTCA-TAAGGATTCACGATTTTGACGCTTTGGGTTCGC-A
1 GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCGG
* * * * ** * * *
14823 AGAAAGGCTTTCTTCT-CACCAATTTT-TATAATGTCAAAGTTCT-T-GCCTCAAATGAGACAAA
66 AGAAATGTTTTCTT-TGCACCTATTTTCCATAAAATCAAAGTT-TGTCTCCT-TAATAAGACAAA
* ** *
14884 CATGGAT--TCTAGTAA-AGATCTTCACTCATTTT--G
128 CATGAATAGTC-A-TAACA-ATCCCCATTC-TTTTCAG
* * * * *
14917 TGATTAGGCACTATAAACACATTCTCCTCAAT-AGGGTAAATGATATTGATGACTTTCATTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * ** * * *
14981 TG-GAAATGTTTCCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATC-CCTTAAAAAAGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
** * * * *
15043 CATTG-ATTCTCGA-ACCAGTCTCCATTCTTTTCAT
128 CA-TGAATAGTC-ATAACAATCCCCATTCTTTTCAG
* * * ** * * * ****
15077 GACT-GAGAACCATAAACACATTC-CCTTTATT-AGGATACTTCACATTGAT-ACTTTGGAGT-C
1 GATTAG-GCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGC
* ** * * * *
15137 GCAAGAAAACCTTTTCTTT-CAACCGT-TTTT-GATAGAATCAAAGTTTGTCACCTTAATAAAAC
64 G-GAG-AAATGTTTTCTTTGC-ACC-TATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGAC
* ** *
15199 AAACGTGAATAGTCAT-ACTAATCCCTTTTCTTTTCAA
125 AAACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * * **
15236 GATTAGGCGCCATAAACA-TTGTCTTCCT-A-TAAGGATACACGATATTGACG-CTTTGGTTT-C
1 GATTAGGCACCATAAACACAT-TC-TCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC
* * * ** * * * ** * * *
15296 GTAGGGAACGCTTTT-TTCCCACCAATTTT-TATCATGTCTAAGTTCGTGTCT-C-AAATGAGAC
64 GGA-GAAATG-TTTTCTTTGCACCTATTTTCCATAAAATCAAAGTT--TGTCTCCTTAATAAGAC
* ***
15357 AAACATGGAT--TCTAGTAA-AGATGTTCATTCATTTT--G
125 AAACATGAATAGTC-A-TAACA-ATCCCCATTC-TTTTCAG
* * * * * * *
15393 TTATTAGGCACTATAAACGCATTCCCCTTATT-AGGGTAAATGATATTGATGATTTTGTTTTGCG
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * ** ** * *
15457 TG-GAAATGTTTCCTTTGC-CTTATTTTCCAAAAAATCATTGTTCATC-CCTTAAATAAGGCAAG
65 -GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
* ** * * *
15519 CGTTG-ATTCTCGTAACAGTCTCCATTCTTTTCATG
128 C-ATGAATAGTCATAACAATCCCCATTCTTTTCA-G
* * * * * * * ** *
15554 GCTT-GGAACCAAAAACACATTC-CCTTCATT-AGGATACATGACATCGATG-CTTTGGTGT-CG
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * ** * *
15614 AAAGAAAAGCTTTTCTTT-CAACTGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAA
65 -GAGAAATG-TTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACAAA
* * * *
15678 TATGAATAG-CCTTACTAATCCCCATTCTTTTTAG
128 CATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * **
15712 GATTAGGCACCATAAACA-TTGTCTTCTCA-TAAGGATACACGATATTGATGCTTTGGTTTTG-G
1 GATTAGGCACCATAAACACAT-TCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * * ** * * * * * *
15774 AAGAAAGGCTTTCTTCGCACCAACTTTT--ATAATGTCTAATTTTGT-GCCTCGAGTGAGACAAA
65 GAGAAATGTTTTCTTTGCACCTA-TTTTCCATAAAATCAAAGTTTGTCTCCT-TAATAAGACAAA
* * **
15836 CTTGAATTGT-AGTAACAATCTTCATTCATTTT--G
128 CATGAATAGTCA-TAACAATCCCCATTC-TTTTCAG
* * * * * *
15869 TGATTAGGCACTATAAACATATTCTCCTTATT-AGGGTAAACGATATTGATTATTTTCTTTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * ** ** * * * *
15933 TG-GAAATGTTTCCTTTGC-CCTATTTTCCTTAAAATCGTAGTTCATTTCCTAAATAAGGCAAGC
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACAAAC
* ** * * *
15996 TTTG-ATTCTCATAACAGTCTCCATTCTTTTCAT
129 -ATGAATAGTCATAACAATCCCCATTCTTTTCAG
* * * * * * ** *
16029 GATT-GCGAACTA-AAAGCACATTC-CCTTCA-TAAGGATACATGACATTGACG-CTTTGGTGT-
1 GATTAG-GCACCATAAA-CACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTG
* * * *
16088 CGTAAGAAAAGCTTTTCTTT-CAACCGT-TTTT-GATAGAATCAAAGTTTGTCTCCTTAATAAGA
63 CG-GAGAAATG-TTTTCTTTGC-ACC-TATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGA
16150 CAAACATGAATAGTCAT-ACTAATCCCCATTCTTTTCAG
124 CAAACATGAATAGTCATAAC-AATCCCCATTCTTTTCAG
* * * * * **
16188 GATTACGCACCATAAACA-TTGTCTTCC-CA-TAAGGATACACGATATTGACGA-TTTGGTTT-C
1 GATTAGGCACCATAAACACAT-TC-TCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC
* * * ** * * ** * * * * *
16248 GTTAGAAACGCTTTCTTCCCACCAATTTT-TATAATGTCTAAGTTCGT-TTCTCAAATGAGACAA
64 G-GAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCT-TAATAAGACAA
* * ***
16311 ACATGGATTGT-AGTAA-AGATCTTTATTCATTTT--G
127 ACATGAATAGTCA-TAACA-ATCCCCATTC-TTTTCAG
* * * * * *
16345 TGATTAGGCACTACAAACGCATTCTACTCATT-AGGGTAAATGATATTAATGATTTTCTTTTGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGC-
* * * ** ** * *
16409 TGA-AAATGTTTCCTTTGC-CTTATTTTCCATAAAATCATTGTTCATC-CCTTAAATAAGGCAAG
64 GGAGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTT-AATAAGACAAA
** * * **
16471 CGATG-ATTCTCATAACAGTCTCCATTCTTTAAATG
128 C-ATGAATAGTCATAACAATCCCCATTCTTTTCA-G
* * * * * * * * ** * *
16506 G-TTTGGAACCAAAAACACATTC-CCTTCATT-AGGATACATGACACTGAAGCTTTAGTGTCGC-
1 GATTAGGCACCATAAACACATTCTCC-TCATTAAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * ** **
16567 AAGAAAAGCTTTTCTTTG-AACTGTTTTTGATGGAAT-AAATGTTTGTCT-CTCTAATAAGACAA
65 GAGAAATG-TTTTCTTTGCACCTATTTTCCATAAAATCAAA-GTTTGTCTCCT-TAATAAGACAA
* *
16629 A-AGTGAATAGTCTTACCAATCCCCATTCTTTTCAG
127 ACA-TGAATAGTCATAACAATCCCCATTCTTTTCAG
16664 GATTAGGCACCATAAACA
1 GATTAGGCACCATAAACA
16682 TAGTCTCGTA
Statistics
Matches: 6620, Mismatches: 2160, Indels: 1490
0.64 0.21 0.15
Matches are distributed among these distances:
153 4 0.00
154 4 0.00
155 124 0.02
156 143 0.02
157 546 0.08
158 2129 0.32
159 3163 0.48
160 434 0.07
161 68 0.01
162 5 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (161 bp):
GATTAGGCACCATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCTTTTGCGG
AGAAATGTTTTCTTTGCACCTATTTTCCATAAAATCAAAGTTTGTCTCCTTAATAAGACAAACAT
GAATAGTCATAACAATCCCCATTCTTTTCAG
Found at i:7747 original size:317 final size:316
Alignment explanation
Indices: 7252--7889 Score: 988
Period size: 317 Copynumber: 2.0 Consensus size: 316
7242 TTTTTGATAG
* *
7252 AATCAAAGTTTGTCTCTTTAATAAGATAAACATGAAGAGTCATACTATCCCCATTCTTTTCAGGA
1 AATCAAAGTTTGTCTCCTTAATAAGACAAACATGAAGAGTCATACTATCCCCATTCTTTTCAGGA
* * * *
7317 TTAGGCCCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGGAAGAA
66 TTAGGCACCATAAACATAGTCTTCCCATAAGGATACACGATATTGACGATTTGGTTTCGGAAGAA
* * ** * *
7382 AGGTTTTCTTTGCACCAATTTTTATAATGTCCAATTTGGTGCCTCAAATGAGACAAACATGAATT
131 ACGCTTTCTTCCCACCAATTTTTATAATGTCCAAGTTCGTGCCTCAAATGAGACAAACATGAATT
* * *
7447 GTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGGTAAA
196 CTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAAGGTAAA
* *
7512 TGATATTGATGATTTTCTTTTGCGGGGAAATGTTTCCTTTGCCCTATTTTCCAAAA
261 TGATATTGATGATTTTCTTTTGCAGGAAAATGTTTCCTTTGCCCTATTTTCCAAAA
*
7568 AATCAAAGTTTGTCTCCTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
1 AATCAAAGTTTGTCTCCTTAATAAGACAAACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGG
* * *
7633 ATTAGGTACCATAAACATTGTCTTCCCATAAGGATACACGATATTGACGATTTGGTTTCGTAAGA
65 ATTAGGCACCATAAACATAGTCTTCCCATAAGGATACACGATATTGACGATTTGGTTTCGGAAGA
* ** *
7698 AACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTTTCTCAAATGAGACAAACATGGAT
130 AACGCTTTCTTCCCACCAATTTTTATAATGTCCAAGTTCGTGCCTCAAATGAGACAAACATGAAT
* * *
7763 TCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTACAAACGCATTCTCCTCATTAGGGTAA
195 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAAGGTAA
* * *
7828 ATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCTTATTTTCCATAA
260 ATGATATTGATGATTTTCTTTTGCAGGAAAATGTTTCCTTTGCCCTATTTTCCAAAA
7885 AATCA
1 AATCA
7890 TTGTTCATCC
Statistics
Matches: 290, Mismatches: 31, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
316 43 0.15
317 247 0.85
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (316 bp):
AATCAAAGTTTGTCTCCTTAATAAGACAAACATGAAGAGTCATACTATCCCCATTCTTTTCAGGA
TTAGGCACCATAAACATAGTCTTCCCATAAGGATACACGATATTGACGATTTGGTTTCGGAAGAA
ACGCTTTCTTCCCACCAATTTTTATAATGTCCAAGTTCGTGCCTCAAATGAGACAAACATGAATT
CTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAAGGTAAA
TGATATTGATGATTTTCTTTTGCAGGAAAATGTTTCCTTTGCCCTATTTTCCAAAA
Found at i:7986 original size:317 final size:315
Alignment explanation
Indices: 7252--7996 Score: 881
Period size: 317 Copynumber: 2.3 Consensus size: 315
7242 TTTTTGATAG
** * * * *
7252 AATCAAAGTTTGTCTCTTTAATAAGATAAACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGG
1 AATCAAAGTTCATCTCCTTAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGG
** * * * *
7316 ATTAGGCCCCATAAACATAGT-CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGGAAG
66 ATTAGGAACCAAAAACAT--TCCCT-TCATAAGGATACACGATATTGACGATTTGGTTTCGGAAG
* * ** * *
7380 AAAGGTTTTCTTTGCACCAATTTTTATAATGTCCAATTTGGTGCCTCAAATGAGACAAACATGAA
128 AAACGCTTTCTTCCCACCAATTTTTATAATGTCCAAGTTCGTGCCTCAAATGAGACAAACATGAA
* * *
7445 TTGTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGGTA
193 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAAGGTA
* *
7510 AATGATATTGATGATTTTCTTTTGCGGGGAAATGTTTCCTTTGCCCTATTTTCCAAAA
258 AATGATATTGATGATTTTCTTTTGCAGGAAAATGTTTCCTTTGCCCTATTTTCCAAAA
** *
7568 AATCAAAGTTTGTCTCCTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
1 AATCAAAGTTCATCTCCTTAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGG
* * ** *
7633 ATTAGGTACCATAAACATTGTCTTCCCATAAGGATACACGATATTGACGATTTGGTTTCGTAAGA
66 ATTAGGAACCAAAAACATTCCCTT--CATAAGGATACACGATATTGACGATTTGGTTTCGGAAGA
* ** *
7698 AACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTTTCTCAAATGAGACAAACATGGAT
129 AACGCTTTCTTCCCACCAATTTTTATAATGTCCAAGTTCGTGCCTCAAATGAGACAAACATGAAT
* * *
7763 TCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTACAAACGCATTCTCCTCATTAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAAGGTAA
* * *
7828 ATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCTTATTTTCCATAA
259 ATGATATTGATGATTTTCTTTTGCAGGAAAATGTTTCCTTTGCCCTATTTTCCAAAA
** * * * * *
7885 AATCATTGTTCATC-CCTTAAATAAGGCAAGCATTG-ATTCTCATAAC-AGTCTCCATTCTTTTC
1 AATCAAAGTTCATCTCCTT-AATAAGACAAACA-TGAATACTCAT-ACTAATCCCCATTCTTTTC
* * * *
7947 ATGG-TTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
63 A-GGATTAGGAACC-AAAA-ACATTCCCTTCATAAGGATACACGATATTGA
7997 TGCTTCGGTG
Statistics
Matches: 370, Mismatches: 49, Indels: 19
0.84 0.11 0.04
Matches are distributed among these distances:
315 2 0.01
316 48 0.13
317 303 0.82
318 9 0.02
319 8 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (315 bp):
AATCAAAGTTCATCTCCTTAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGG
ATTAGGAACCAAAAACATTCCCTTCATAAGGATACACGATATTGACGATTTGGTTTCGGAAGAAA
CGCTTTCTTCCCACCAATTTTTATAATGTCCAAGTTCGTGCCTCAAATGAGACAAACATGAATTC
TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAAGGTAAAT
GATATTGATGATTTTCTTTTGCAGGAAAATGTTTCCTTTGCCCTATTTTCCAAAA
Found at i:8384 original size:476 final size:474
Alignment explanation
Indices: 7568--20456 Score: 17303
Period size: 476 Copynumber: 27.1 Consensus size: 474
7558 TTTTCCAAAA
*
7568 AATCAAAGTTTGTCTCCTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * *
7633 ATTAGGTACCATAAACATTGTCTTCCCATAAGGATACACGATATTGACGATTTGGTTTCGTAAGA
66 ATTAGGCACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* **
7698 AACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTTTCTCAAATGAGACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * *
7763 TCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTACAAACGCATTCTCCTCATTAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * *
7828 ATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATTG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAG
7893 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGAA
324 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGAA
* *
7958 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTCGGTGTCACAAGAAAAGCTTT
389 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* *
8023 TCTTTCAACCGTTTCTGATCG
454 TCTTTCAACCGTTTTTGATAG
* *
8044 AATCAATGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTAAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * *
8109 ATTAGGCACCATAAATATTATTTTCCTATAAGGATACACGATATTGATGCTTTGGTTTCGGAAGA
66 ATTAGGCACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
** * * * *
8174 AAGGCTTTCTTTGCACCAATTTTTATAATGTCTAATTTGGTGCCTTAAATGAGA-AAAGCATGAA
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAA-CATGGA
* *
8238 TTTTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
193 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* *
8303 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCTTTTGCCTTATTTTCCATAAAATCATA
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* * * * *
8368 GTTCATCCCCTAAATAAGGCGAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCA-AGATTGCG
323 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTG-G
* * ** *
8432 AACCAAAAGCACATTCCCTTCATAAGGATATGTGACATTGATGCTTTGGTGTCGCAAGAAAAGTT
387 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* *
8497 TTTCTTTCAAACATTTTTGATAG
452 TTTCTTTCAACCGTTTTTGATAG
* * * * *
8520 AATCAAAGTTTATCTCCTTAATAAGACAAACGTGAATAGTCATACTAATCACCACTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * * * * * *
8585 ATTAGGCACCATAAACATTGTTTTCCTGTGAGGATACACAACATTGATGCTTTGGTTTTGTAAGA
66 ATTAGGCACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * *
8650 AACGCTTTCTTTCCC-CCAATTTTTATAATGTCTAAGTTCGTGTCTTAAATGAGACAAACATGGA
129 AAGGCTTTC-TTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * *
8714 TTCTAGTAAAAATCTTGATTCATTTTGCGATTAGGCACTATAAACGCATTCTCCTCTTTAGGGTA
193 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * *
8779 AATGATATTGATGATTTTCTATTGCATGGAAATGTTTCCTTTGCCTTATTTTCGATAAAATCATT
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* * * *
8844 GTTTATCCCTTAAATATGGCAAGCGTTGATTCCCATAACAGTCTCCATTCTTTTCATGGTTTGGA
323 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGA
* *
8909 ACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCGTTGGTGTCGCAAGAAAAGCTT
388 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
**
8974 TTCTTTCAACCGCGTTTGATAG
453 TTCTTTCAACCGTTTTTGATAG
* ** * * * *
8996 AGTCAAAGTTCATCTCTTTAATAAGACAATCGTGAATAGTCTTACTAATCCCCATTCTTTTCATG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * *
9061 ATTAGGCACCTTAAACATAGTTTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGA
66 ATTAGGCACCATAAACATA-TCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * *
9126 AAAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGTGACAAACATGAAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * *
9191 TCTAGAAAAGATGTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* ** ** *
9256 ATGGTATTGATGATTTTCTTTTGCATGGAAACATTTCCTTTGCCCTATTTTCCATAAAATTGTTG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAG
* * * *
9321 TTCATTCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCACCATTCTTTTCATGGTTGGGAA
324 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGAA
* * * *
9386 CCAAAAACACGTTCCCTTCGTTAGGATACATGACATTGATGCTTCGGTGTCACAAGAAAAGCTTT
389 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
*
9451 TCTTTCAACCGTTTCTGATAG
454 TCTTTCAACCGTTTTTGATAG
* * * *
9472 AATCAATGTTTGTCTCTTTAATAAGACAAACGTGAATAGTTATACTAATCCCCATTCTTTTCAAG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * * **
9537 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATACTGATGCTTTAGCTTCACAAGA
66 ATTAGGCACCATAAACATA-TCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
** * * * * *
9602 AAGGCTTTCTTTTCACCAATTTTTATAATGTCTAAGTTTGTGCCTCAAATCAAAAAAACACGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
** * *
9667 TCTAGTAATCATCTTCATT-ATTTTGTGATTAGGCACTACAAACACATTCTCCTCATGAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * * *
9731 ATGATGTTGATGATTTTTTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAG
* * * * * *
9796 TTCATCCCTTAAATAAGGCAAGCGTTGATTTTCCTACCAGTCTCCATTCTTTTCATGATTGGGAA
324 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGAA
* * * *
9861 CCAAAAACACATTCCCTTCATTAGGATACTTGACATTGACGCTTGGGTGTCGCAAGAATAGCTTT
389 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* *
9926 TCTTTCAACCATTTTTTATAG
454 TCTTTCAACCGTTTTTGATAG
* * ** * *
9947 AATCAAAGTTTATCTCTTAAATAAGACAAACACAAATAGACATACTAGTCCCCATTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * *
10012 ATTCGGCACCATAAACATAGTCTTCTCATAAGGATACACGATGTTAACGCTTTGGTTTCGTAAGA
66 ATTAGGCACCATAAACATA-TCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * * * * *
10077 AAGGCTTTCTTCCCACCGATTTTCACAAAGTCTAAGTTCTTCCCTCAAATGAGACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * *
10142 TCTAGTAATGATCTTCATTCAATTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* *
10207 ATGGA-ATTGATGATTTTCTTTTGCGTGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATT
259 AT-GATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* * * * *
10271 GCTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCACCATTCTTTTCACGGTTGGGA
323 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGA
* **
10336 ACCAAAAACACATTCCCTTCATTAGGATACATGACACTGATGCTTTAATGTCGCAAGAAAAGCTT
388 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* *
10401 TTCTTTGAACCGTTTTTGATGG
453 TTCTTTCAACCGTTTTTGATAG
* * * * *
10423 AATCAACGTTTGTCTCTCTAATAAGACAAA-AGTGAATAGTCTTACCAATCCCCATTCTTTTTAG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACA-TGAATAGTCATACTAATCCCCATTCTTTTCAG
* * * * *
10487 GATTAGACACCATAAACATAGTC-TC-ATAAGGATTCACGATTTTGACGCTTTGGGTTCGCAAGA
65 GATTAGGCACCATAAACATA-TCTTCTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * *
10550 AAGGCTTTCTTCTCACCAATTTTTATAATGTCAAAGTTCATGCCTCAAATGAGACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
*
10615 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * ** *
10680 ATGATATTGATGATTTTCATTTGCATGAAAATGTTTCCTTTGCCCTA-TTTCTTTAAAATCAAAG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAG
* * * **
10744 TTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGA-ACCAATCTCCATTCTTTTCAT-GACTGAG
324 TTCATCCCTTAAATAAGGCAAGCATTGATTCTC-ATAACAGTCTCCATTCTTTTCATGGTTTG-G
* * * * * * * *
10807 AACCAAAAACACATTCCCTTTATTAGGATACTTCAGATTGATACTTTGGAGTCACAAGAAAACCT
387 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
10872 TTTCTTTCAACCGTTTTTGATAG
452 TTTCTTTCAACCGTTTTTGATAG
* * * * * *
10895 AATCAAAGTTTGTCTCCTTAATAAAACAAACGTGAATAATCATACTAATCCCCTTTTCTTTTCAA
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCC-ATTCTTTTCAG
* * * * *
10960 GATTAGGCGCCATAAACATTGTCTTCCTATAAGGATACACGACATTGATGCTTTGGTTTCGTAGG
65 GATTAGGCACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAG
* * * *
11025 GAACGCTTTCTTCCCACCAATTTTTATCATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGA
128 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
11090 TTCTAGTAAAGATCTTCATTTATTTTGTGATTAGGCACTATAAACGCATTCCCCTCATTAGGGTA
193 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * *
11155 AATGATATTGATGATTTTGTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCAAAAAATCATT
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* *
11220 GTTCATCCCTTAAATAAGGCAAGCGTTGATTCTTC-TAACAGTCTCCATTCTTTTCATGGCTTGG
323 GTTCATCCCTTAAATAAGGCAAGCATTGATTC-TCATAACAGTCTCCATTCTTTTCATGGTTTGG
* * *
11284 AACTAAAAACACATTCCCTTCATTAGGATACATGACATCGATGCTTTGGTGTCGAAAGAAAAGCT
387 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
*
11349 TTTCTTTCAACAGTTTTTGATAG
452 TTTCTTTCAACCGTTTTTGATAG
* * * *
11372 AATCAAAGTTTGTCTCTTTAATAAGACAAATATGAATAGCCTTACTAATCCCCATTCTTTTTAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * *
11437 ATTAGGCACCATAAACATAGTCTTCTCA-ATAGGATACACGATATTGATGCTTTGGTTTTGGAAG
66 ATTAGGCACCATAAACATA-TCTTCT-ATA-AGGATACACGATATTGACGCTTTGGTTTCGTAAG
* * * * * * * *
11501 AAAGGCTTTCTTCGCACCAACTTTTATAATGTCTAATTTTGTGCCTCGAGTGAGACAAACTTGAA
128 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
11566 TTGTAGTAACA-ATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATGAGGGT
193 TTCTAGTAA-AGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGT
* * * *
11630 AAACGATATTGATTATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCGT
257 AAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCAT
* * *
11695 AGTTCATTTCC-TAAATAAAGGCAAGCTTTGATTCTCATAACAGTCTCCATTCTTTTCAT-GATT
322 AGTTCA-TCCCTTAAAT-AAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTT
* *
11758 GCGAA-CAAAAAGCACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGTGTCGTAAGAAA
385 G-GAACCAAAAA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
11822 AGCTTTTCTTTCAACCGTTTTTGATAG
448 AGCTTTTCTTTCAACCGTTTTTGATAG
* *
11849 AATTAAAGTTTGTCTCCTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* *
11914 ATTAGGCACCATAAACATAGTCTTCTCATACGGATACACGATATTGACGATTTGGTTTCGTAAGA
66 ATTAGGCACCATAAACATA-TCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* **
11979 AACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTTTCTCAAATGAGACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * * * *
12044 TCTAGCAAAGATCTTTATTCATTTTGGGATTAGGCACTACAAACGCATTCTCCTCATTAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * *
12109 ATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATTG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAG
12174 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGAA
324 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGAA
* *
12239 CCAAAAACACATTCCCTTCATTA--ATACATGACATTGATGCTTCGGTGTCACAAGAAAAGCTTT
389 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* *
12302 TCTTTCAACCGTTTCTGATCG
454 TCTTTCAACCGTTTTTGATAG
* *
12323 AATCAATGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTAAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * * * *
12388 ATTAGGCACTATAAATATTGTTTTCCTATAAGGATACACGATATTGATGCTTTGGTTTCGGAAGA
66 ATTAGGCACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
** * * *
12453 AAGGCTTTCTTTGCACCAATTTTTATAATGTCTAATTTGGTGCCTCAAATGAGA-AAAGCATGAA
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAA-CATGGA
* *
12517 TTGTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
193 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
*
12582 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATA
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* * * * *
12647 GTTCATCCCCTAAATAAGGCGAGCGTTGATTCTCATAACAGTCTCCATTC-TTTCA-AGATTGCG
323 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTG-G
* * * *
12710 AACCAAAAGCACATTCCCTTCATAAGGATACGTGACATTGATGCTTTGGTGTCGCAAGAAAAGTT
387 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* *
12775 TTTCTTTCAAACATTTTTGATAG
452 TTTCTTTCAACCGTTTTTGATAG
* * * *
12798 AATCAAAGTTTGTCTCCTTAATAAGACAAACGTGAATAGTCATACTAATCACCACTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * ** * * * * *
12863 ATTAGGCACCATAAACATTGTTTTCCCGTGAGGATACACAACATTGATGCTTTGGTTTTGTAAGA
66 ATTAGGCACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * * * *
12928 AACGCTTTCTTCCCCCCAATTTTTATAATGTCTATGTTCGTGTCTTAAATGAGACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * *
12993 TCTAGTAAAGATCTTCATTCATTTTGCGATTAGGCACTATAAACGCATTCTCCTCTTTAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * * *
13058 ATGATATTAATGATTTTCTATTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATTG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAG
* *
13123 TTCATCCCTTAAATAAGGCAAGCGTTGATTCCCATAACAGTCTCCATTCTTTTCATGGTTTGGAA
324 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGAA
* * * *
13188 CCAAAAACACATTCTCTTCATTAGGATACATAACATCGATGCGTTGGTGTCGCAAGAAAAGCTTT
389 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
**
13253 TCTTTCAACCGCGTTTGATAG
454 TCTTTCAACCGTTTTTGATAG
* ** * * *
13274 AGTCAAAGTTCATCTCTTTAATAAGACAAACGTGAATAGTCTTACTAATCCCCATTCTTTTCATG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * *
13339 ATTAGGCACCTTAAACAGAGT-TTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGA
66 ATTAGGCACCATAAACATA-TCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * *
13403 AAAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGTGACAAACATGAAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * *
13468 TCTAGAAAAGATGTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* ** *
13533 ATGGTATTGATGATTTTCTTTTGCATGGAAACATTTCCTTTGCCCTATTTTCCATAAAATCGCT-
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATC-ATA
* * * * * *
13597 GTTCATTCCTTAAATAGGGCAAGCATTGATTCTCGTAATAGTCACCATTCTTTTCATGGTTGGGA
323 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGA
* * * *
13662 ACCAAAAACACGTTCCCTTCGTTAGGATACATGACATTGATGCTTCGGTGTCACAAGAAAAGCTT
388 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
13727 TTCTTTCAACCGTTTTTGATAG
453 TTCTTTCAACCGTTTTTGATAG
* * *
13749 AAT-AAATGTTTGTCTCTTTAATAAGATAAACGTAAATAGTCATACTAATCCCCATTCTTTTCAG
1 AATCAAA-GTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG
* *
13813 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATACTGACGCTTTGGTTTCGCAAG
65 GATTAGGCACCATAAACATA-TCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGTAAG
** * * * *
13878 AAAGGCTTTCTTTTCACCAATTTTTAGAATGTCTAAGTTTGTGCCTCAAATGAGAAAAACAAGGA
128 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
** * *
13943 TTCTAGTAATCATCTTCATT-ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATGAAGGTA
193 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * * *
14007 AATGATGTGGATGATTTT-TTTTGCATGGAAATGTTTCCTTTGTCCTATTTTCCTTAAAATCAAA
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* * * * * *
14071 GTTCATCCCTTAAATAAGGCAAGCGTTGATTTTCCTACCAGTCTCCATTCTTTTCATGATTGGGA
323 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGA
* * * *
14136 ACCAAAAACACATTCCCTTCATTAGGATACTTGACATTGACGCTTGGGTGTCGCAAGAATAGCTT
388 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
*
14201 TTCTTTCAACCGTTTTTTATAG
453 TTCTTTCAACCGTTTTTGATAG
* * ** * *
14223 AATCAAAGTTTATCTCTTAAATAAGACAAACACAAATAGACATACTAGTCCCCATTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * *
14288 ATTCGGCACCATAAACATAGTCTTCTCATAAGGATACACGATGTTAACGCTTTGGTTTCGTAAGA
66 ATTAGGCACCATAAACATA-TCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * * * * *
14353 AAGGCTTTCTTCCCACCGATTTTCACAATGTCTAAGTTCTTCCCTCAAATGAAACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * *
14418 TCTAGTAATGATCTTCATTCAATTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * *
14483 ATGGTATTGATGATTTTCTTTTGCGTGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATTG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAG
* * * * * *
14548 CTCATCCCTTAAATTAGGCAAGCGTTGATTCTCATAACAGTCACCATTCTTTTCACGGTTGGGAA
324 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGAA
* *
14613 CCAAAAACACATTCCCTTCATTAGGATACATGACACTGATGCTTTAGTGTCGCAAGAAAAGCTTT
389 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
*
14678 TCTTTGAACCGTTTTTGAT-G
454 TCTTTCAACCGTTTTTGATAG
* * * *
14698 AAATCAACGTTTGTCTCTCTAATAAGACAAA-AGTGAATAGTCTTACCAATCCCCATTCTTTTCA
1 -AATCAAAGTTTGTCTCTTTAATAAGACAAACA-TGAATAGTCATACTAATCCCCATTCTTTTCA
* * * *
14762 GGATTAGGCACCATAAACATAGTC-TC-ATAAGGATTCACGATTTTGACGCTTTGGGTTCGCAAG
64 GGATTAGGCACCATAAACATA-TCTTCTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAG
* * *
14825 AAAGGCTTTCTTCTCACCAATTTTTATAATGTCAAAGTTCTTGCCTCAAATGAGACAAACATGGA
128 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* *
14890 TTCTAGTAAAGATCTTCACTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGGTA
193 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * *
14955 AATGATATTGATGACTTTCATTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAA
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* * **
15020 GTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGA-ACCAGTCTCCATTCTTTTCAT-GACTGA
323 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTC-ATAACAGTCTCCATTCTTTTCATGGTTTG-
* * * * * * *
15083 GAACCATAAACACATTCCCTTTATTAGGATACTTCACATTGATACTTTGGAGTCGCAAGAAAACC
386 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
15148 TTTTCTTTCAACCGTTTTTGATAG
451 TTTTCTTTCAACCGTTTTTGATAG
* * * * ** *
15172 AATCAAAGTTTGTCACCTTAATAAAACAAACGTGAATAGTCATACTAATCCCTTTTCTTTTCAAG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * *
15237 ATTAGGCGCCATAAACATTGTCTTCCTATAAGGATACACGATATTGACGCTTTGGTTTCGTAGGG
66 ATTAGGCACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * * *
15302 AACGCTTTTTTCCCACCAATTTTTATCATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * * * *
15367 TCTAGTAAAGATGTTCATTCATTTTGTTATTAGGCACTATAAACGCATTCCCCTTATTAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * * * *
15432 ATGATATTGATGATTTTGTTTTGCGTGGAAATGTTTCCTTTGCCTTATTTTCCAAAAAATCATTG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAG
* * *
15497 TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGCTTGGAA
324 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGAA
* *
15562 CCAAAAACACATTCCCTTCATTAGGATACATGACATCGATGCTTTGGTGTCGAAAGAAAAGCTTT
389 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
*
15627 TCTTTCAACTGTTTTTGATAG
454 TCTTTCAACCGTTTTTGATAG
* * * *
15648 AATCAAAGTTTGTCTCTTTAATAAGACAAATATGAATAGCCTTACTAATCCCCATTCTTTTTAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * *
15713 ATTAGGCACCATAAACATTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGGAAGA
66 ATTAGGCACCATAAACA-TATCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * * * * * * *
15778 AAGGCTTTCTTCGCACCAACTTTTATAATGTCTAATTTTGTGCCTCGAGTGAGACAAACTTGAAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * *
15843 TGTAGTAACA-ATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTTATTAGGGTA
194 TCTAGTAA-AGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * *
15907 AACGATATTGATTATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCGTA
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* * *
15972 GTTCATTTCC-TAAATAAGGCAAGCTTTGATTCTCATAACAGTCTCCATTCTTTTCAT-GATTGC
323 GTTCA-TCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTG-
* * * * *
16035 GAACTAAAAGCACATTCCCTTCATAAGGATACATGACATTGACGCTTTGGTGTCGTAAGAAAAGC
386 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
16100 TTTTCTTTCAACCGTTTTTGATAG
451 TTTTCTTTCAACCGTTTTTGATAG
*
16124 AATCAAAGTTTGTCTCCTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * * *
16189 ATTACGCACCATAAACATTGTCTTCCCATAAGGATACACGATATTGACGATTTGGTTTCGTTAGA
66 ATTAGGCACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* **
16254 AACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTTTCTCAAATGAGACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * * * *
16319 TGTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTACAAACGCATTCTACTCATTAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * * *
16384 ATGATATTAATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATTG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAG
**
16449 TTCATCCCTTAAATAAGGCAAGCGA-TGATTCTCATAACAGTCTCCATTCTTTAAATGGTTTGGA
324 TTCATCCCTTAAATAAGGCAAGC-ATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGA
* * *
16513 ACCAAAAACACATTCCCTTCATTAGGATACATGACACTGAAGCTTTAGTGTCGCAAGAAAAGCTT
388 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * *
16578 TTCTTTGAACTGTTTTTGATGG
453 TTCTTTCAACCGTTTTTGATAG
* * *
16600 AAT-AAATGTTTGTCTCTCTAATAAGACAAA-AGTGAATAGTCTTACCAATCCCCATTCTTTTCA
1 AATCAAA-GTTTGTCTCTTTAATAAGACAAACA-TGAATAGTCATACTAATCCCCATTCTTTTCA
* * * * *
16663 GGATTAGGCACCATAAACATAGTC-TC-GTAAGGATTCACGATTTTGACGCTTTGGGTTCGCAAG
64 GGATTAGGCACCATAAACATA-TCTTCTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAG
* * * *
16726 AAAGGCTTTCTTCTCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAAAGAGACAAACAAGGA
128 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
** * * *
16791 TTCTAGTAAAGATCTTCATTCATTTTGTGATTACACACTATAAACACATTTTGCTCAATAGGGTA
193 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * *
16856 AATGATATTGATGACTTTCATCTGCATGGAAATGTTTCCTTTGCCCTATTTTCC-TAAAAATCAA
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCAT-AAAATCAT
* * * * **
16920 AGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGA-ACCAATCTCCATTATTTTCAT-GACTG
322 AGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC-ATAACAGTCTCCATTCTTTTCATGGTTTG
* * * * * *
16983 AGAACCAAAAACACATTCCCTTTATTAGGATACTTCACATTGATACTTTGGAGTCGCAAGAAAGG
386 -GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* *
17048 CTTTTCTTTCAATCGTTTTTTATAG
450 CTTTTCTTTCAACCGTTTTTGATAG
* * * * * *
17073 AATCAAAGTTTGTCTCCTTAATAAAACAAACCTGAATAGTCCTACTAATCCCCCTTTCTTTTCAA
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAAT-CCCCATTCTTTTCAG
* * * *
17138 GATTA-GCTGCCATAAACATTGTCTTCCTATAAGGATGCACGATATTGACGCTTTGGTTTCGTAG
65 GATTAGGC-ACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAA
* * * * *
17202 GGAACGCTTTCTTCCCACCAATTTTTATCATGTCTAAGTTTGTGTCTCAAATGAGACAAACATGG
127 GAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
** *
17267 ATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAATGCATTCCCCTCATTAGGGT
192 ATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGT
* * * * *
17332 AAATGATATTGATGATTTTGTTTTGCATGAAAATTTTTTCTTTGCCTTATTTTCCATAAAATCAT
257 AAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCAT
* * * * * * *
17397 AGTTTATCCCTTAAATAAGGCAAG-AGTTTATTCTCGTAATAGTCTCCATTGTTTTCATGATTGG
322 AGTTCATCCCTTAAATAAGGCAAGCA-TTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTG
* * * * ** *
17461 GAGCCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTCGGAGTCATAAGAACAGC
386 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* *
17526 TTTTCTTTCAACTGTTTCTGATAG
451 TTTTCTTTCAACCGTTTTTGATAG
* ** * * *
17550 AATCAATGTTTGTCTCTTTAATAAGACAAATGTGAATAGTTATACTAATCCCTATTCTTTTTAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* *
17615 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATGTTGACACTTTGGTTTCGTAAGA
66 ATTAGGCACCATAAACATA-TCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * * *
17680 AAGGCTTTCTTCCCACCGATTTTTACAATGTCTAAGTTCTTCCCTCAAATGAGACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * *
17745 TCTAGTAATGATCTTCATTCAATTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* *
17810 ATGGTATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATTG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAG
* * * *
17875 CTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTTA-GGATTGCGA
324 TTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTG-GA
*
17939 ACCAAAAGCACATTCCCTTCA-TAGGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
388 ACCAAAAACACATTCCCTTCATTA-GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * *
18003 TTTCTTTCAAACATTTTTGATCG
452 TTTCTTTCAACCGTTTTTGATAG
* *
18026 AATCAAAGTTTGTCTCCTTAATAAGACAAACATGAATAGTCATACTAATCACCATTCCTTTT-AG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATT-CTTTTCAG
* * * * * * * *
18090 GATTAAGAACCATAAACATTGTTTTCCTAGAAGGATACATGATATTGATGCTTTGGTTTTGTAAG
65 GATTAGGCACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAG
* * * ** *
18155 AAACGTTTTCTTCTCACCAATTTTTATAATGTCTAAGTTCGTATCTTAAATGAGACAAACATGGA
128 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
*
18220 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGGTA
193 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * *
18285 AATGATATTGATGATTTTCATTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAA
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* **
18350 GTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCA-AACCAGTCTCCATTCTTTTCAT-GACTGA
323 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAA-CAGTCTCCATTCTTTTCATGGTTTG-
* * * * * * *
18413 GAACCACAAACACATTCCCTTTATTAGGATACTTCACATTGATACTTTGGAGTCGCAAGAAAACC
386 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
18478 TTTTCTTTCAACCGTTTTTGATAG
451 TTTTCTTTCAACCGTTTTTGATAG
* * * * * * *
18502 AATCAAAGTTTGTCTCCTTAATAAAACAAACCTAAATAGTCACACTAATCCCCTTTTCTTTTCAA
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCC-ATTCTTTTCAG
* * *
18567 GATTAGGCGCCATAAACATTGTCTTCCTATAAGGATACACGATATTGACGCTTTGGTTTCGTAGG
65 GATTAGGCACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAG
* * * * * *
18632 GAACGCTTTTTTCCCACCAATTTTTATCATGTCTAAGTTCATGACTCAAATGAGACAAACATGGA
128 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * *
18697 TTCTAGTAAAGATGTTCATTCATTTTGTTATTAGGCACTATAAACGCATTCCCCTCATTAGGGTA
193 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * *
18762 AATGATATTGATGATTTTGTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCAAAAAATCATT
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* * *
18827 GTTCATCCCTTAAAGAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGGCTTGGA
323 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGA
* * * *
18892 ACCAAAAACACATTCCTTTCATTAAGATACATGACATCGATGCTTTGGTGTCGAAAGAAAAGCTT
388 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* *
18957 TTCTTTCCACAGTTTTTGATAG
453 TTCTTTCAACCGTTTTTGATAG
** * * *
18979 AATCAAAGTTTGTCTCTTTAATAAGACAAATTTGAATAGCCTTACTAATCCCCATTCTTTTTAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * *** * * *
19044 ATTAGGCACCATGAACATAGTCTTCTCATAAGGATGCACGATATTGATATTTTGATTTTGGAAGA
66 ATTAGGCACCATAAACATA-TCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * * * * * * * *
19109 AAGGCTTTCTTCGCACCAACTTTTATAATGTCTAATTTTGTGCCTCGAGTGAGACAAACTTGAAC
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* *
19174 TGTAGTAACA-ATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGGTA
194 TCTAGTAA-AGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * * *
19238 AACGATATTGATTATTTTCTTTTGCATGGAAATGTTTCCTTCGCCCTATTTTCCTTAAAATCGTA
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* * *
19303 GTTCATTTCC-TAAATAAGGCAAGCTTTGATTCTCATAACAGTCTCCATTCTTTTCAT-GATTGC
323 GTTCA-TCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTG-
* * * * *
19366 GAACTAAAAGCACATTCCCTTCATAAGGATACATGACATTGACGCTTTGGTGTCGTAAGAAAAGC
386 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
19431 TTTTCTTTCAACCGTTTTTGATAG
451 TTTTCTTTCAACCGTTTTTGATAG
*
19455 AATCAAAGTTTGTCTCCTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * *
19520 ATTAGGCACCATAAACATTGTCTTCCCATAAGGATACACGATATTGACGATTTGGTTTCGTAAGA
66 ATTAGGCACCATAAACA-TATCTT-CTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* **
19585 AACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTTTCTCAAATGAGACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* *
19650 TCTAGTAAAGATCTGT-ATTCATTTTGTGATTAGGCACTACAAACGCATTCTCCTCATTAGGGTA
194 TCTAGTAAAGATCT-TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * *
19714 AATGATATTGATGATTTTCTTTTGCGTGAAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATT
258 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* *
19779 GTTCATCCCTTAAATAACGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGA
323 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGA
* *
19844 ACCAAAAACACATTCCCTTCATTAGGATACATGACACTGATGCTTTAGTGTCGCAAGAAAAGCTT
388 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * *
19909 TTCTTTGAACCATTTTTGATGG
453 TTCTTTCAACCGTTTTTGATAG
* * *
19931 AATCAAAGTTTGTCTCTCTAATAAGACAAA-AGTGAATAGTCTTACCAATCCCCATTCTTTTCAG
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACA-TGAATAGTCATACTAATCCCCATTCTTTTCAG
* * * *
19995 GATTAGGCACCATAAACATAGTC-TC-ATAAGGATTCACGATTTTGACGCTTTGGGTTCGCAAGA
65 GATTAGGCACCATAAACATA-TCTTCTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGA
* * * *
20058 AAGGCTTTCTTCTCACCAATTTTTATAATGTCTAAGTTCTTGCCTCAAAAGAGACAAACAAGGAT
129 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* *
20123 TCTAGTAAAGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAATAGGGTAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * *
20188 ATGATATTGATGATTTTCATTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAG
259 ATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAG
* * * *
20253 TTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGA-ACCAGTCTCCATTATTTTCAT-GATTGAG
324 TTCATCCCTTAAATAAGGCAAGCATTGATTCTC-ATAACAGTCTCCATTCTTTTCATGGTTTG-G
* * * * * *
20316 AACCAAAAACACATTCCCTTTATTAGGATACTTCACATTGATACTTTGGAGTCGCAAGAAAGGCT
387 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
20381 TTTCTTTCAACCGTTTTTGATAG
452 TTTCTTTCAACCGTTTTTGATAG
*
20404 AATCAAAGTTTGTCTCCTTAATAAGACAAACATGAATAGTCATACTAATCCCC
1 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCC
20457 TCATTAGGGT
Statistics
Matches: 10857, Mismatches: 1427, Indels: 261
0.87 0.11 0.02
Matches are distributed among these distances:
471 2 0.00
472 198 0.02
473 1398 0.13
474 795 0.07
475 1398 0.13
476 5630 0.52
477 1423 0.13
478 13 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (474 bp):
AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
ATTAGGCACCATAAACATATCTTCTATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAA
GGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAAT
GATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATAGTT
CATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTTGGAACC
AAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
TTTCAACCGTTTTTGATAG
Found at i:20690 original size:281 final size:281
Alignment explanation
Indices: 20174--20737 Score: 783
Period size: 281 Copynumber: 2.0 Consensus size: 281
20164 AACACATTCT
*
20174 CCTCAATAGGGTAAATGATATTGATGATTTTCATTTGCATGGAAATGTTTCCTTTGCCCTATTTT
1 CCTCAATAGGGTAAATGATATTGATGATTTTCATTTGCATGAAAATGTTTCCTTTGCCCTATTTT
*
20239 CCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGAACCAGTCTCCATTATT
66 CCATAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGAACCAGTCTCCATTATT
* * * *
20304 TTCATGATTGAGAACCAAAAACACATTCCCTTTATTAGGATACTTCACATTGATACTTTGGAGTC
131 TTCATGATTGAGAACCAAAAACACAATCCCTTCATTAGGATACATCACATTGATACTTCGGAGTC
* * *
20369 GCAAGAAAGGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAAA
196 ACAAGAAAAGCTTTTCTTTCAACCGTTTCTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAAA
20434 CATGAATAGTCATACTAATCC
261 CATGAATAGTCATACTAATCC
* ** * * *
20455 CCTCATTAGGGTAAATGATATTGATGATTTTGTTTTGCATGAAAATTTTTTCTTTGCCTTATTTT
1 CCTCAATAGGGTAAATGATATTGATGATTTTCATTTGCATGAAAATGTTTCCTTTGCCCTATTTT
* * * * * *
20520 CCATAAAATCATAGTTTATCCCTTAAATAAGGCAAG-AGTTTATTCTCGTAA-TAGTCTCCATTG
66 CCATAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCA-TTGATTCTCG-AACCAGTCTCCATTA
* * * *
20583 TTTTCATGATTGGGAGCCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTCGGCA
129 TTTTCATGATTGAGAACCAAAAACACAATCCCTTCATTAGGATACATCACATTGATACTTCGG-A
* * * * *
20648 -TCATAAGAAAAGCTTTTCTTTCAACTGTTTCTGATCGAATCAATGTTTGTCTCTTTAATAAGAC
193 GTCACAAGAAAAGCTTTTCTTTCAACCGTTTCTGATAGAATCAAAGTTTGTCTCCTTAATAAGAC
* * *
20712 AAGCGTGAATAGTTATACTAATCC
258 AAACATGAATAGTCATACTAATCC
20736 CC
1 CC
20738 ATTCTTTTTA
Statistics
Matches: 247, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
280 1 0.00
281 243 0.98
282 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (281 bp):
CCTCAATAGGGTAAATGATATTGATGATTTTCATTTGCATGAAAATGTTTCCTTTGCCCTATTTT
CCATAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGAACCAGTCTCCATTATT
TTCATGATTGAGAACCAAAAACACAATCCCTTCATTAGGATACATCACATTGATACTTCGGAGTC
ACAAGAAAAGCTTTTCTTTCAACCGTTTCTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAAA
CATGAATAGTCATACTAATCC
Found at i:21157 original size:757 final size:754
Alignment explanation
Indices: 19701--21210 Score: 2272
Period size: 757 Copynumber: 2.0 Consensus size: 754
19691 AACGCATTCT
*
19701 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAAATGTTTCCTTTGCCTTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCTTATTTT
* *
19766 CCATAAAATCATTGTTCATCCCTTAAATAACGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
66 CCATAAAATCATAGTTCATCCCTTAAATAACGCAAGAGTTGATTCTCATAACAGTCTCCATTCTT
* * * * **
19831 TTCATGGTTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACACTGATGCTTTAGTGTC
131 TTCATGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACACTGATGCTTCAGCATC
* * * *
19896 GCAAGAAAAGCTTTTCTTTGAACCATTTTTGATGGAATCAAAGTTTGTCTCTCTAATAAGACAAA
196 ACAAGAAAAGCTTTTCTTTCAACCATTTCTGATCGAATCAAAGTTTGTCTCTCTAATAAGACAAA
19961 AGTGAATAGTCTTACCAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTCATAAGG
261 AGTGAATAGTCTTACCAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTCATAAGG
* * * * *
20026 ATTCACGATTTTGACGCTTTGGGTTCGCAAGAAAGGCTTTCTTCTCACCAATTTTTATAATGTCT
326 ATACACGATGTTGACACTTTGGGTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTACAATGTCT
* *
20091 AAGTTCTTGCCTCAAAAGAGACAAACAAGGATTCTAGTAAAGATCTTCATTCATTTTATGATTAG
391 AAGTTCTTCCCTCAAAAGAGACAAACAAGGATTCTAGTAAAGATCTTCATTCAATTTATGATTAG
*
20156 GCACTATAAACACATTCTCCTCAATAGGGTAAATGATATTGATGATTTTCATTTGCATGGAAATG
456 GCACTATAAACACATTATCCTCAATAGGGTAAATGATATTGATGATTTTCATTTGCATGGAAATG
*
20221 TTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTC
521 TTTCCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTC
* * * *
20286 GAACCAGTCTCCATTATTTTCATGATTGAGAACCAAAAACACATTCCCTTTATTAGGATACTTCA
586 GAAACAGTCTCCATTATTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTAGGATACATCA
* * *
20351 CATTGATACTTTGGAGTCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTG
651 CATTGATACTTTGGAGTCGCAAGAAAAGCTTTTCTTTCAAACATTTTTGATAGAATCAAAGTTTG
20416 TCTCCTTAATAAGACAAACATGAATAGTCATACTAATCC
716 TCTCCTTAATAAGACAAACATGAATAGTCATACTAATCC
* * *
20455 CCTCATTAGGGTAAATGATATTGATGATTTTGTTTTGCATGAAAATTTTTTCTTTGCCTTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCTTATTTT
* * * * * *
20520 CCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGAGTTTATTCTCGTAATAGTCTCCATTGTT
66 CCATAAAATCATAGTTCATCCCTTAAATAACGCAAGAGTTGATTCTCATAACAGTCTCCATTCTT
* * *
20585 TTCATGATTGGGAGCCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTCGGCATC
131 TTCATGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACACTGATGCTTCAGCATC
* ** * * *
20650 ATAAGAAAAGCTTTTCTTTCAACTGTTTCTGATCGAATCAATGTTTGTCTCTTTAATAAGACAAG
196 ACAAGAAAAGCTTTTCTTTCAACCATTTCTGATCGAATCAAAGTTTGTCTCTCTAATAAGACAAA
* * *
20715 CGTGAATAGT-TATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAT
261 AGTGAATAGTCT-TACCAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG---TCTCAT
* * *
20779 AAGGATACACGATGTTGACACTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCGATTTTTACAAT
322 AAGGATACACGATGTTGACACTTTGGGTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTACAAT
* * * *
20844 GTCTAAGTTCTTCCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAATTTGTGA
387 GTCTAAGTTCTTCCCTCAAAAGAGACAAACAAGGATTCTAGTAAAGATCTTCATTCAATTTATGA
* * *
20909 TTAGGCACTATAAACACATTATCCTCATTAGGGTAAATGGTATTGATGATTTTCTTTTGCATGGA
452 TTAGGCACTATAAACACATTATCCTCAATAGGGTAAATGATATTGATGATTTTCATTTGCATGGA
** * * *
20974 AATGTTTCCTTTGCCCTATTTTCCATAAAATC-ATTTCTCATCCCTTAAATAAGGTAAGCGTTGA
517 AATGTTTCCTTTGCCCTATTTTCCATAAAATCAAAGT-TCATCCCTTAAAAAAGGCAAGCATTGA
* * * *
21038 TTCTC-ATAACAGTCTCCATTCTTTTCAAGATTGCGAACCAAAAGCATATTCCCTTCA-TAGGGA
581 TTCTCGA-AACAGTCTCCATTATTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTA-GGA
* * * *
21101 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAAACATTTTTGATCGAATCA
644 TACATCACATTGATACTTTGGAGTCGCAAGAAAAGCTTTTCTTTCAAACATTTTTGATAGAATCA
21166 AAGTTTGTCTCCTTAATAAGACAAACATGAATAGTCATACTAATC
709 AAGTTTGTCTCCTTAATAAGACAAACATGAATAGTCATACTAATC
21211 ACCATTCCTT
Statistics
Matches: 676, Mismatches: 73, Indels: 11
0.89 0.10 0.01
Matches are distributed among these distances:
753 1 0.00
754 279 0.41
756 5 0.01
757 391 0.58
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (754 bp):
CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCTTATTTT
CCATAAAATCATAGTTCATCCCTTAAATAACGCAAGAGTTGATTCTCATAACAGTCTCCATTCTT
TTCATGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACACTGATGCTTCAGCATC
ACAAGAAAAGCTTTTCTTTCAACCATTTCTGATCGAATCAAAGTTTGTCTCTCTAATAAGACAAA
AGTGAATAGTCTTACCAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTCATAAGG
ATACACGATGTTGACACTTTGGGTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTACAATGTCT
AAGTTCTTCCCTCAAAAGAGACAAACAAGGATTCTAGTAAAGATCTTCATTCAATTTATGATTAG
GCACTATAAACACATTATCCTCAATAGGGTAAATGATATTGATGATTTTCATTTGCATGGAAATG
TTTCCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTC
GAAACAGTCTCCATTATTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTAGGATACATCA
CATTGATACTTTGGAGTCGCAAGAAAAGCTTTTCTTTCAAACATTTTTGATAGAATCAAAGTTTG
TCTCCTTAATAAGACAAACATGAATAGTCATACTAATCC
Found at i:21347 original size:476 final size:474
Alignment explanation
Indices: 20455--30815 Score: 13805
Period size: 476 Copynumber: 21.8 Consensus size: 474
20445 ATACTAATCC
* * * * *
20455 CCTCATTAGGGTAAATGATATTGATGATTTTGTTTTGCATGAAAATTTTTTCTTTGCCTTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* * * * *
20520 CCATAAAATCATAGTTT-ATCCCTTAAATAAGGCAAGAGTTTATTCTCGTAATAGTCTCCATTGT
66 CCATAAAATCAT--TTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCT
* * * **
20584 TTTCATGATTGGGAGCCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTCGGCAT
129 TTTCATGATT-GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
** * * * * *
20649 CATAAGAAAAGCTTTTCTTTCAACTGTTTCTGATCGAATCAATGTTTGTCTCTTTAATAAGACAA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
* * * * * *
20714 GCGTGAATAGTTATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAT
258 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCAT
* * * * *
20779 AAGGATACACGATGTTGACACTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCGATTTTTACAAT
323 AAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAAT
* ** * *
20844 GTCTAAGTTCTTCCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAATTTGTGA
388 GTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGA
*
20909 TTAGGCACTATAAACACATTAT
453 TTAGGCACTATAAACACATTCT
*
20931 CCTCATTAGGGTAAATGGTATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
*
20996 CCATAAAATCATTTCTCATCCCTTAAATAAGGTAAGCGTTGATTCTCATAACAGTCTCCATTCTT
66 CCATAAAATCATTT-TCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
* * *
21061 TTCAAGATTGCGAACCAAAAGCATATTCCCTTCA-TAGGGATACATGACATTGATGCTTTGGTGT
130 TTCATGATTG-GAACCAAAAACACATTCCCTTCATTA-GGATACATGACATTGATGCTTTGGTGT
* * *
21125 CGCAAGAAAAGCTTTTCTTTCAAACATTTTTGATCGAATCAAAGTTTGTCTCCTTAATAAGACAA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
* * * *
21190 ACATGAATAGTCATACTAATCACCATTCCTTTT-AGGATTAAGAACCATAAACATTGTTTTCCCA
258 ACATGAATAGTCATACTAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCA
* * * * *
21254 TAAGGATAAATGATATTGATGCTTTGGTTTTGTAAGAAACGTTTTCTTCCCACCAATTTTTATAA
322 TAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAA
* * *
21319 CGTCTAAGTTCGTATCTTAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTG
387 TGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTG
21384 ATTAGGCACTATAAACACATTCT
452 ATTAGGCACTATAAACACATTCT
* *
21407 CCTCAATAGGGTAAATGATATTGATGATTTTCATTTGCATGGAAATGTTTCCTTTGCCCTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* ** * * *
21472 CCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGA-ACCAGTCTCCATTCT
66 CCATAAAATC-ATTTTCATCCCTTAAATAAGGCAAGCGTTGATTCTC-ATAACAGTCTCCATTCT
* * * * * * *
21536 TTTCATGACTGAGAACCACAAACACATTCCCTTTATTAGGATACTTCACATTGATACTTTGGAGT
129 TTTCATGATTG-GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* *
21601 CGCAAGAAAACCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAAACAA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
* * * *
21666 ACCTGAATAGTCATACTAATCCCCATTTCTTTTCAAGATTAGGCGCCATAAACATTGTCTTCCTA
258 ACATGAATAGTCATACTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCA
* *
21731 TAAGGATACACGATATTGACGCTTTGGTTTCGTAGGGAACGCTTTCTTCCCACCAATTTTTATAA
322 TAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAA
* * * *
21796 TGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCACTCATTTTGTG
387 TGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTG
21861 ATTAGGCACTATAAACACATTCT
452 ATTAGGCACTATAAACACATTCT
* * *
21884 CCTCAATAGGGTAAATGATATTGATGATTTTCATTTGCATGGAAATGTTTCTTTTGCCCTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* ** * * *
21949 CCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGA-ACCAGTCTCCATTCT
66 CCATAAAATC-ATTTTCATCCCTTAAATAAGGCAAGCGTTGATTCTC-ATAACAGTCTCCATTCT
* * * * * * *
22013 TTTCATGACTGAGAACCACAAACACATTCCCTTTATTAGGATACTTCACATTGATACTTTGGAGT
129 TTTCATGATTG-GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
*
22078 CGCAAGAAAACCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
22143 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCAT
258 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCAT
* *
22208 AAGGATACATGATATTGACGATTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAAT
323 AAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAAT
* * *
22273 GTCTAAGTTCGTTTCTCAAATGAGACAAACATGGATTGTAGTAAAGATCTTTATTCATTTTGTGA
388 GTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGA
*
22338 TTAGGCACTACAAACACATTCT
453 TTAGGCACTATAAACACATTCT
* * * *
22360 CCTCAGTAGGGTAAATGATATTGATGATTTTCTTGTGCATGAAAATGTTTCCTTTGCCTTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* * * *
22425 CCAAAAAATAATTGTTCATCCCTTAAATATGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTT
66 CCATAAAATCATT-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
* *
22490 TTCATGGCTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGTGTC
130 TTCAT-GATTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
*
22555 GTAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAAA
194 GCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAAA
*
22620 CATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTACGCACCATAAACATTGTCTTCCCATA
259 CATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCATA
* *
22685 AGGATACATGATATTGACGATTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAATG
324 AGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAATG
* * *
22750 TCTAAGTTCGTTTCTCAAATGAGACAAACATGGATTGTAGTAAAGATCTTTATTCATTTTGTGAT
389 TCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGAT
* *
22815 TAGGCACTACAAACGCATTCT
454 TAGGCACTATAAACACATTCT
* * * *
22836 CCTCAGTAGGGTAAATGATATTGATGATTTTCTTGTGCATGAAAATGTTTCCTTTGCCTTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
*
22901 CCATAAAATCATTGTTCATCCCTTAAATAAGGGAAGCGTTGATTCTCATAACAGTCTCCATTCTT
66 CCATAAAATCATT-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
* * * *
22966 TTCATGGTTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACACTGAAGCTTTAGTGTC
130 TTCAT-GATTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* *
23031 GCAAGAAAAGCTTTTCTTTGAACCGTTTTTGATGGAATCAAAGTTTGTCT-CTCTAATAAGACAA
194 GCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCT-TAATAAGACAA
* * * *
23095 A-AGTGAATAGTCTTACCAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC-T--CA
258 ACA-TGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCA
* * * * * *
23156 TAAGGATTCACGATTTTGACGCTTTGGGTTCGCAAGAAAGGCTTTCTTCTCACCAATTTTTATAA
322 TAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAA
* * * * *
23221 TGTCTAAGTTCATGCCTCAAAAGAGACAAACAAGGATTCTAGTAAAGATCTTCATTCATTTAGTG
387 TGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTG
*
23286 ATTACGCACTATAAACACATTCT
452 ATTAGGCACTATAAACACATTCT
* * * * *
23309 GCTTAATAGGGTAAATGATATTGATGATTTTCATCTGCATGGAAATGTTTCCTTTGCCCTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* ** * * * *
23374 CCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGA-ACCAGTCTCCATTAT
66 CCATAAAATC-ATTTTCATCCCTTAAATAAGGCAAGCGTTGATTCTC-ATAACAGTCTCCATTCT
* * * * * *
23438 TTTCATGACTGAGAACCAAAAACACATTCCCTTTTATTAGGATACTTCACATTGATACTTTGGAG
129 TTTCATGATTG-GAACCAAAAACACATTCCC-TTCATTAGGATACATGACATTGATGCTTTGGTG
* * *
23503 TCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCATAATAAAACA
192 TCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACA
* * * * * *
23568 AACCTGAATAGTCCTACTAATCCCCCTTTCTTTTTAAGATTA-GCTGCCATAAACATTGTCTTCC
257 AACATGAATAGTCATACTAAT-CCCCATTCTTTTCAGGATTAGGC-ACCATAAACATTGTCTTCC
* * * *
23632 TATAAGGATGCACGATATTGACGCTTTGGTTTCGTAGGGAACGCTTTCTTCCCACCAATTTTTAT
320 CATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTAT
*
23697 CATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTG
385 AATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTG
** *
23762 TGATTAGGCACTATAAATGCATTCC
450 TGATTAGGCACTATAAACACATTCT
* * * * * *
23787 CCCCATTAGGGTAAATGATATTGATGATTTTGTTTTGCATGAAAATTTTTTCTTTGCCTTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* * *
23852 CCATAAAATCATAGTTT-ATCCCTTAAATAAGGCAAGAGTTTATTCTCATAACAGTCTCCATTGT
66 CCATAAAATCAT--TTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCT
* * * *
23916 TTTCATGATTGGGAGCCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTCGGAGT
129 TTTCATGATT-GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
** * * *
23981 CATAAGAAAAGCTTTTCTTTCAACTGTTTCTGATAGAATCAATGTTTGTCT-CTCTAATAAGACA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCT-TAATAAGACA
* * * * *
24045 AACGTGAATAGTTATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCA
257 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCA
* * * * *
24110 TAAGGATACACGATGTTGACACTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCGATTTTTACAA
322 TAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAA
* ** * * *
24175 TGTCTAAGTTCTTCCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAATTTGTG
387 TGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTG
*
24240 ATTAGGCACTATAAACACATTAT
452 ATTAGGCACTATAAACACATTCT
* *
24263 CCTCATTAGGGTAAATGGTATTGATGATTTTCATTTGCATGGAAATGTTTCCTTTGCCCTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
*
24328 CCATAAAATCATTGCTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
66 CCATAAAATCATT-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
* * * *
24393 TTTAGGATTGCGAACCAAAAGCACATTCCCTTCA-TAGGGACACATGACATTGATGCTTTGGTGT
130 TTCATGATTG-GAACCAAAAACACATTCCCTTCATTA-GGATACATGACATTGATGCTTTGGTGT
* * * *
24457 CGCAAGAAAAGCTTTTCTTTCAAACATTTTTGATCGAATCAAAGTTTGTATCCTTAATAAGACAA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
* * * * *
24522 ACATGAATAGTCATACTAATCACCATTCCATTT-AGGATTAAGAACCATAAACATTGTTTTCCCA
258 ACATGAATAGTCATACTAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCA
* * * *
24586 TAAGGATACATGATATTGATGCTTTGGTTTTGTAAGAAACGTTTTCTTCCCACCAATTTTTATAA
322 TAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAA
* * * *
24651 TGTCTAAGTTCGTATCTTAAATTAGACAAACATGGATTCTAGTGAAGATCTTCATTCATTTTGTG
387 TGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTG
24716 ATTAGGCACTATAAACACATTCT
452 ATTAGGCACTATAAACACATTCT
* * * * *
24739 CCTCAATAGGTTAAATGATATTGATGATTTTCATTTGCATGAAAATGTTTCCTTAGCCCTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* ** * *
24804 CCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCGTTGATTCTCGA-ACCAGTCTCCATTCT
66 CCATAAAATC-ATTTTCATCCCTTAAATAAGGCAAGCGTTGATTCTC-ATAACAGTCTCCATTCT
* * * * * * * * *
24868 TTTCATGACTGAGAACCACAAACACATTCCTTTTAGTAGGATACTTCACATTGATACTTTGGAGT
129 TTTCATGATTG-GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * *
24933 CGCAAGAAAACCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCGTCTCCTTAATAAAACAA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
* * * *
24998 ACCTGAATAGTCATACTAATCCCCTTTTCTTTTCAAGATTAGGCACCATAAACATTGTCTTCCTA
258 ACATGAATAGTCATACTAATCCCC-ATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCA
* * * *
25063 TAAGGATACACGATATTGACGTTTTGGTTTCGTAGGGAACGCTTTCTTCCCACCAATTTTTATCA
322 TAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAA
* * *
25128 TGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTT
387 TGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTG
* *
25193 ATTAGGCACTATAAACGCATTCC
452 ATTAGGCACTATAAACACATTCT
* *
25216 CCTCATTAGGGTAAATGATATTGATGATTTTGTTTTGCATGGAAATGTTTCCTTTGCCTTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* *
25281 CCAAAAAATCATTGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTT
66 CCATAAAATCATT-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
* * *
25346 TTCATGGCTTGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATCGATGCTTTGGTGTC
130 TTCAT-GATTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * *
25411 GAAAGAAAAGCTTTTCTTTCAACAGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAA
194 GCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAAA
* * * * ** *
25476 TATGAATAGCCTTACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACAAAGTCTTCTCATA
259 CATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCATA
* * * * * * * *
25541 AGGATACATGATATTGATGCTTTGGTTTTGGAAGAAAGGCTTTCTTCGCATCAACTTTTATAATG
324 AGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAATG
* * * * * * * * *
25606 TCTAATTTTGTGCCTCGAGTGAGACAAGCTTGAATTGTAGTAACA-ATCTTCATTCATTTTGTGA
389 TCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAA-AGATCTTCATTCATTTTGTGA
*
25670 TTAGGCACTATAAACATATTCT
453 TTAGGCACTATAAACACATTCT
* *
25692 CCTCATTAGGGTAAACGATATTGATTATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* * * * * *
25757 CCTTAAAATCGTAGTTAATTTCC-TAAATAAGGCAAGCTTTGATTCTCATAACAGTCTCCATTCT
66 CCATAAAATCAT-TTTCA-TCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCT
* * * * *
25821 TTTCATGATTGCGAACTAAAAGCACATTCCTTTCATAAGGATACATGACATTGACGCTTTGGTGT
129 TTTCATGATTG-GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
*
25886 CGTAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
*
25951 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCAG
258 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCAT
*
26016 AAGGATACACGATATTGACGATTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAAT
323 AAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAAT
* * * *
26081 GTCTAAGTTCATTTCTCAAATGAGACAAACATAGATTCTAGTAAAGATCTTTATTCATTTTGTGA
388 GTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGA
* *
26146 TTAGGCACTACAAACGCATTCT
453 TTAGGCACTATAAACACATTCT
* *
26168 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCTTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
*
26233 CCATAAAATCATTGTTCATCCCTTAAATAAGGCAAGCGTTAATTCTCATAACAGTCTCCATTCTT
66 CCATAAAATCATT-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
* * * *
26298 TTCATGGTTTGGAACCAAAAACACATTCCTTTCATTAGGATACATGACACTGATGCTTTAGTGTC
130 TTCAT-GATTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * *
26363 ACAAGAAAAGCTTTTCTTTGAACCGTTTTTGATGGAATCAAAGTTTGTCT-CTCTAATAAGACAA
194 GCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCT-TAATAAGACAA
* * * *
26427 A-AGTGAATAGTCTTACCAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC-T--CG
258 ACA-TGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCA
* * * * * * * *
26488 TAAGGATTCACGATTTTGACGCTTTGGGTTCGCACGAAAGGCTTTCTTCTCACCAATTTTTACAA
322 TAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAA
* * *
26553 TGTCTAAGTTCATG-CTTCAAAAGAGACAAACAAGGATTCTAGTAAAGATCTTCATTCATTTTGT
387 TGTCTAAGTTCGTGTC-TCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGT
*
26617 GATTACGCACTATAAACACATTCT
451 GATTAGGCACTATAAACACATTCT
* * * * *
26641 GCTCAATAGGGTAAATGATATTGATGATTTTCATCTGCATAGAAATGTTTCCTTTGCCCTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* ** * ** * *
26706 CCTTAAAATCAAAGTTCATCCCTTAAAAAAGG-AAGCAATGATTCTCGA-ACCAGTCTCCATTAT
66 CCATAAAATC-ATTTTCATCCCTTAAATAAGGCAAGCGTTGATTCTC-ATAACAGTCTCCATTCT
* * * * * * *
26769 TTTCATGACTGAGAACCAAAAACACATTCGCTTTATTGGGATACTTCACATTGATACTTTGGAT-
129 TTTCATGATTG-GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-TG
* *
26833 TCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAAACA
192 TCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACA
* * * * *
26898 AACCTGAATAGTCATACTAATCCCCTTTTCCTTTCAAGATTA-GCTGCCATAAACATTGTCTTCC
257 AACATGAATAGTCATACTAATCCCC-ATTCTTTTCAGGATTAGGC-ACCATAAACATTGTCTTCC
* * * *
26962 TATAAGGATGCACGATATTGACGCTTTGGTTTCGTAGGGAACGCTTTCTTCCCACCAATTTTTAT
320 CATAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTAT
*
27027 CATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTG
385 AATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTG
* ** *
27092 TGATTAGACACTATAAATGCATTCC
450 TGATTAGGCACTATAAACACATTCT
* * * * *
27117 CCTCATTAGGGTAAATGATATTGATGATTTTGTTTTGCATGAAAATTTTTTCTTTGCCTTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* * * *
27182 CCATAAAATCATAGTTT-ATCCCTTAAATAAGGCAAGAGTTTATTCTCGTAACAGTCTCCATTGT
66 CCATAAAATCAT--TTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCT
* * * * * *
27246 ATTCATGATTGGGAGCCAAAAACATAATCCCTTCATTAGGATACATGACATTGATGCTTCGGCGT
129 TTTCATGATT-GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
** * * * *
27311 CATAAGAAAAGCTTTTCTTTCAACTGTTTCTGATAGAATCAATGTTTGTCTCTTTAATAAGACAA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
* * * * *
27376 ACGTGAATAGTTATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAT
258 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCAT
* * * * *
27441 AAGGATACACGATGTTGACACTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCGATTTTTACAAT
323 AAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAAT
* ** * * *
27506 GTCTAAGTTCTTCCCTCAAATGAGACAAACATGGATTCTAGTAATGATTTTCATTCAATTTGTGA
388 GTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGA
* *
27571 TTAGGCATTATAAACACATTAT
453 TTAGGCACTATAAACACATTCT
* *
27593 CCTCTTTAGGGTAAATGGTATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* *
27658 CCATAAAATCATTGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTCATAACAGTCTCCATTCTT
66 CCATAAAATCATT-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
* * * *
27723 TTTAGGATTGCGAACCAAAAGCACATTCCCTTCA-TAGGGATACAAGACATTGATGCTTTGGTGT
130 TTCATGATTG-GAACCAAAAACACATTCCCTTCATTA-GGATACATGACATTGATGCTTTGGTGT
* * * *
27787 CGCAACAAAAGCTTTTCTTTCAAACATTTTTGATCGAATCAAAGTTTGTCTCCTTAATAAGACAA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAA
* * * * *
27852 ACTTGAATAGTCATACTAATCACCATTCCTTTT-AGGATTAAGAACCATAAACATTGTTTTCCCA
258 ACATGAATAGTCATACTAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCA
* * * *
27916 TAAGGATACATGATATTGATGCTTTGGTTTTGTAAGAAACGTTTTCTTCCCACCAATTTTTATAA
322 TAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAA
* * * * *
27981 TGTCTAAGTTCGTATCTTAAATAAGACAAACATGGATTCTAGTAAAGACCTTCATTGATTTTGTG
387 TGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTG
*
28046 ATTAGGCACTATAAACGCATTCT
452 ATTAGGCACTATAAACACATTCT
* * *
28069 CCTCATTATGGTAAATGATATTGATGATTTTCTTTTGCATGGGAATGTTTCCTTTGCCTTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* *
28134 CCATAAAATCATTGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAATCTCCATTCTT
66 CCATAAAATCATT-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
* * * * *
28199 TTCGTGGTTTGGAATCAAAAACACATTCCCTTTATTAGGATACATGACATCGATGCTTTGGTGTC
130 TTCAT-GATTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
** * ** * *
28264 AAAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAAAATCAAAGTTCCTCTCTTTAATAAGATAAA
194 GCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAAA
* * * * * * * * *
28329 CGTAAATAGTCTTACTAATCCCCATTCTTTTTATGATTAGGAACCATAAACATAGTTTTCTCATA
259 CATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCATA
* *
28394 AGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATG
324 AGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAATG
* ** *
28459 TCTAAGTTCTTCCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
389 TCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGAT
28524 TAGGCACTATAAACACATTCT
454 TAGGCACTATAAACACATTCT
* *
28545 CCTCATTAGGGTAAATGGTATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* * * * *
28610 CCAAAAAATCTTTGTTCATCCCTGAAATAAGGAAAGCGTTGATTCTCATAACAGTCTTCATTCTT
66 CCATAAAATCATT-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
* * *
28675 TTCATGATTGGGAGA-CAAAAACAAATTTCCTTCATTAGGATACATGACATTGACGCTTCTTCGG
130 TTCATGATT-GGA-ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC-T-TT-GG
* * * * *
28739 TGTCACAAGAAAAGCTTTTCTTTCAACCGTTTCTGATCGAATCAATGTTTGTCTCTTTAATAAGA
190 TGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGA
* * * * *
28804 CAAACCTGAATAGTTATACTAATCCCCATTCTTTTAAGGATTAGGCACCAAAAACATTGTTTTCC
255 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCC
* *
28869 CATAAGGATACACGATATTGATGCTTTGGTCTT-GTAAGAAACGCTTTCTTCCCACTAATTTTTA
320 CATAAGGATACACGATATTGACGCTTTGGT-TTCGTAAGAAACGCTTTCTTCCCACCAATTTTTA
* * *
28933 AAATGTCTAAGTTCGTGTCTAAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATGTT
384 TAATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTT
*
28998 GTGATTAGGCACTATAAACGCATTCT
449 GTGATTAGGCACTATAAACACATTCT
* * *
29024 CCTCGTTATGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* *
29089 CCATAAAATCATTGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAATCTCCATTCTT
66 CCATAAAATCATT-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
* * * *
29154 TTCGTGGTTTGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATCGATGCTTTGGTGTC
130 TTCAT-GATTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
** ** **
29219 AAAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTATTTAATAAGACAAA
194 GCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAAA
** * * * * * *
29284 TGTGAATAGTCTTACTAATCCCCATTCTTTTCATGATTAGGAACCATAAACATAGTTTTCTCATA
259 CATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCATA
* * *
29349 AGGATACACGACATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATG
324 AGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAATG
* * * *
29414 TCTAAGTTCGTGCCTCAAATGCGACAAACATGGTTTCTAG-AAATGTTCTTCATTCATTTTGTGA
389 TCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAA-GATCTTCATTCATTTTGTGA
*
29478 TTAGGCACTATAAACATATTCT
453 TTAGGCACTATAAACACATTCT
* * *
29500 CCTCTTTAGGGTTAATGGTATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* *
29565 CCATAAAATCATTATTCATCCCTTAAATAAGGAAAGCGTTGATTCTCGTAACAGTCTCCATTCTT
66 CCATAAAATCATT-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTT
* * *
29630 TTCATGGTTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATCGATGCTTCGGTGTC
130 TTCAT-GATTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* ** *
29695 GCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCGAAGTTCATCTCTTTTAATAAGACAA
194 GCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTC-CTTAATAAGACAA
** * * * * * *
29760 ATGTGAATAGTCTTACTAATCCCCATTCTTTTCATGATTAGGAACTATAAACATAGTCTTCTCAT
258 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCAT
* * * * ** *
29825 AAGGATACACGATATTGACACTTTGGTTTTGTAGGAAAGGCTTTCTTCCCACCAATTTTTGCAAA
323 AAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAAT
* * * * * ** ***
29890 GTCTAAGTTCGTGCCTCAAATGAGTCAAGCATGGATTCTAGTGATGATCCCCATTCATTACATGA
388 GTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGA
*
29955 CTAGGCACTATAAACACATTCT
453 TTAGGCACTATAAACACATTCT
* * * * *
29977 CATTATTAGGGTAAATGATATCGATGATTTTCTTTTGTATTGGAAATGTTTCCTTTACCCTATTT
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCA-TGGAAATGTTTCCTTTGCCCTATTT
* * * * * * *
30042 TCCTTAAATTCATAGTTCATCTCTTGAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCTTTCA
65 TCCATAAAATCAT-TTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCT
*
30107 TTTCATGATTAGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
129 TTTCATGATT-GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * *
30172 CGTAAGAAAAGCTTTTCTTTCAACCTTTTTTGATAGAATCAATGTTCGTCT-CTTAAATAAGACA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTT-AATAAGACA
* * * *
30236 AACATGAATAGTCTTACTAATCCCTATTCTTTTCATGATTAGGCACCATAAACATTGTTTTCCCA
257 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCA
* *
30301 TAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAACGCTTTCTTCCCACCAATTTTTATAA
322 TAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAA
* * *
30366 TGTCTAAGTTCGTGTCTTAAATGAGACAAACATGGATTCTATTAAAGATCTTCATTCATTTTGTA
387 TGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTG
* * ** *
30431 ATTAGGCATTACAAATGCATTAT
452 ATTAGGCACTATAAACACATTCT
* * *
30454 CCTCATTATGGTAAATGATATTGATGATTTTCTTTTGTATGGAAATGTTTCCTTTGCCCTATTTA
1 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
* ** *
30519 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGT-ACTAGTCTCCATTCT
66 CCATAAAATC-ATTTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAAC-AGTCTCCATTCT
* * * *
30583 TTTCACGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGACGCTTTGGTGT
129 TTTCATGATT-GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * *
30648 CGCAAGAATAGCTTTTCTTTCAACCGTTTTTTATAGAATCAAAGTTTATCT-CTTAAATAAGAAA
193 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTT-AATAAGACA
* * * ** * *
30712 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGCATTCGGTAATATAAACATAGTCTTCTCA
257 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCA
* * * * *
30777 TAAGGATACATGATGTTAATGCTTTGGTTTTGTAAGAAA
322 TAAGGATACACGATATTGACGCTTTGGTTTCGTAAGAAA
30816 GTGATGAAAA
Statistics
Matches: 8712, Mismatches: 1071, Indels: 204
0.87 0.11 0.02
Matches are distributed among these distances:
471 3 0.00
472 155 0.02
473 519 0.06
474 110 0.01
475 77 0.01
476 5342 0.61
477 1628 0.19
478 455 0.05
479 418 0.05
480 5 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (474 bp):
CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTT
CCATAAAATCATTTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTT
TCATGATTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
AAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAAACA
TGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCCCATAAG
GATACACGATATTGACGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAATGTC
TAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTA
GGCACTATAAACACATTCT
Found at i:29391 original size:159 final size:157
Alignment explanation
Indices: 20577--30815 Score: 1115
Period size: 159 Copynumber: 64.5 Consensus size: 157
20567 GTAATAGTCT
* * * * * * * *
20577 CCATTGTTTTCATGATTGGGAGCCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGCT
* ** ** * * * * ** *
20642 TCGGCATCATAAGAAAAGCTTTTCTTTCAACTGTTTCTGATCGAATCAATGTTTGTCTCTTTAAT
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAAT
*
20707 AAGACAAGCGTGAATAGT-TATACTAATCC
130 AAGACAAACGTG-ATAGTCT-TACTAATCC
* * * * ** **
20736 CCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTT-CTCATAAGGATACACGATGTTGACAC
1 CCATTCTTTTCATGATTAGGAACCATAAACATA-T-TTCCTCATAAGGATACATGACATTGATGC
* * * * * * * * * *
20800 TTTGGTTTCGTAAGAAAGGC-TTTCTTCCCACCGATTTTT-ACA-ATGTCTAAGTTCTTCCCTCA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCG-TTTTTGATAGA-ATCAAAGTTCATCTCTTA
* * * * *
20862 AATGAGACAAACATGGAT--TCTAGTAATGATCT
127 AATAAGACAAACGT-GATAGTCT--TACTAATCC
* * * * * * * * * ** *
20894 TCATTCAATTT-GTGATTAGGCACTATAAACACATTATCCTCATTAGGGTAAATGGTATTGATGA
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCATAAGGATACATGACATTGATGC
** * * * * * * ** *
20958 TTTTCTTTTGCATGGAAATG-TTTCCTTTGC--CC-TATTTTCCATAAAATC-ATTTCTCATCCC
64 TTTGGTTTCGCA-AGAAAAGCTTTTCTTT-CAACCGT-TTTT-GATAGAATCAAAGT-TCATCTC
** * ** * * *
21018 TTAAATAAGGTAAGCGTTGATTCTCATAAC-AGTCT
124 TTAAATAAGACAAACG-TGATAGTC-TTACTAATCC
* * *
21053 CCATTCTTTTCAAGATT-GCGAACCA-AAAGCATATTCCCTTCATAGGGATACATGACATTGATG
1 CCATTCTTTTCATGATTAG-GAACCATAAA-CATATTTCC-TCATAAGGATACATGACATTGATG
* * * * **
21116 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAAACATTTTTGATCGAATCAAAGTTTGTCTCCTT-
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCT-CTTA
* * *
21180 AATAAGACAAACATGAATAGTCATACTAATCA
127 AATAAGACAAACGTG-ATAGTCTTACTAATCC
* * * * *
21212 CCATTCCTTTT-AGGATTAAGAACCATAAACATTGTTTTCC-CATAAGGATAAATGATATTGATG
1 CCATT-CTTTTCATGATTAGGAACCATAAACA-T-ATTTCCTCATAAGGATACATGACATTGATG
* * * * * * * * * *
21275 CTTTGGTTTTGTAAGAAACG-TTTTCTTCCCACCAATTTTT-ATA-ACGTCTAAGTTCGTATCTT
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGATAGA-ATCAAAGTTCATCTCTT
* * * *
21337 AAATGAGACAAACATGGAT--TCTAGTA-AAGATCT
126 AAATAAGACAAACGT-GATAGTCT--TACTA-ATCC
* * * * * * * *
21370 TCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCA-ATAGGGTAAATGATATTGATG
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCATA-AGGATACATGACATTGATG
* ** * * * ** * *
21433 ATTTTCATTT-GCATGGAAATG-TTTCCTTTGC--CC-TATTTTCCTTAAAATCAAAGTTCATCC
63 -CTTTGGTTTCGCA-AGAAAAGCTTTTCTTT-CAACCGT-TTTT-GATAGAATCAAAGTTCATCT
* * * * ** ** * * *
21493 CTTAAAAAAGGCAAGCATTGATTCTCGAACCAGTCT
123 CTTAAATAAGACAAAC-GTGATAGTCTTACTAATCC
* * * * * * * * *
21529 CCATTCTTTTCATGACT-GAGAACCACAAACACATTCCCTTTATTAGGATACTTCACATTGATAC
1 CCATTCTTTTCATGATTAG-GAACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGC
** * **
21593 TTTGGAGTCGCAAGAAAACCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTT-A
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCT-CTTAA
* * *
21657 ATAAAACAAACCTGAATAGTCATACTAATCC
128 ATAAGACAAACGTG-ATAGTCTTACTAATCC
* ** * * * *
21688 CCATTTCTTTTCAAGATTAGGCGCCATAAACATTGTCTTCCT-ATAAGGATACACGATATTGACG
1 CCA-TTCTTTTCATGATTAGGAACCATAAACA-TAT-TTCCTCATAAGGATACATGACATTGATG
* * * * * * * *
21752 CTTTGGTTTCGTAGGGAACGC-TTTCTTCCCACCAATTTTT-ATA-ATGTCAAAGTTCATGC-CT
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGATAGA-ATCAAAGTTCAT-CTCT
* * * * *
21813 CAAATGAGACAAACATGGAT--TCTAGTA-AAGATCT
125 TAAATAAGACAAACGT-GATAGTCT--TACTA-ATCC
* * * * * * * * *
21847 TCACTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCA-ATAGGGTAAATGATATTGATG
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCATA-AGGATACATGACATTGATG
* ** * * ** * ** * *
21910 ATTTTCATTT-GCATGGAAA--TGTTTCTTT-TGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
63 -CTTTGGTTTCGCAAGAAAAGCT-TTTCTTTCAACCGT-TTTT-GATAGAATCAAAGTTCATCTC
* * * * ** ** * * *
21971 TTAAAAAAGGCAAGCATTGATTCTCGAACCAGTCT
124 TTAAATAAGACAAAC-GTGATAGTCTTACTAATCC
* * * * * * * * *
22006 CCATTCTTTTCATGACT-GAGAACCACAAACACATTCCCTTTATTAGGATACTTCACATTGATAC
1 CCATTCTTTTCATGATTAG-GAACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGC
** * **
22070 TTTGGAGTCGCAAGAAAACCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTT-A
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCT-CTTAA
* *
22134 ATAAGACAAACATGAATAGTCATACTAATCC
128 ATAAGACAAACGTG-ATAGTCTTACTAATCC
* * * * * *
22165 CCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCC-CATAAGGATACATGATATTGACGA
1 CCATTCTTTTCATGATTAGGAACCATAAACA-TAT-TTCCTCATAAGGATACATGACATTGATGC
* * * * * * * * * *
22229 TTTGGTTTCGTAAGAAACGC-TTTCTTCCCACCAATTTTT-ATA-ATGTCTAAGTTCGTTTCTCA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGATAGA-ATCAAAGTTCATCTCTTA
* * * ** * *
22291 AATGAGACAAACATGGATTGTAGTA-AAGATCT
127 AATAAGACAAACGT-GATAGTCTTACTA-ATCC
** * * * * * * * *
22323 TTATTCATTTT-GTGATTAGGCACTACAAACACATTCTCCTCAGT-AGGGTAAATGATATTGATG
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCA-TAAGGATACATGACATTGATG
* ** * * * * * * * * *
22386 ATTTTCTTGT-GCATGAAAATG-TTTCCTTT--GCCTTATTTTCCAAAAAAT-AATTGTTCATCC
63 CTTTGGTT-TCGCAAGAAAA-GCTTTTCTTTCAACCGT-TTTT-GATAGAATCAA-AGTTCATCT
* * * ** * * *
22446 CTTAAATATGGCAAGCGTTGATTCTCGTAAC-AGTCT
123 CTTAAATAAGACAAACG-TGATAGTC-TTACTAATCC
* * * * * *
22482 CCATTCTTTTCATGGCTT-GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACGC
1 CCATTCTTTTCAT-GATTAGGAACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGC
* * **
22546 TTTGGTGTCGTAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTT-A
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCT-CTTAA
* *
22610 ATAAGACAAACATGAATAGTCATACTAATCC
128 ATAAGACAAACGTG-ATAGTCTTACTAATCC
* * * * * * *
22641 CCATTCTTTTCAGGATTACGCACCATAAACATTGTCTTCC-CATAAGGATACATGATATTGACGA
1 CCATTCTTTTCATGATTAGGAACCATAAACA-TAT-TTCCTCATAAGGATACATGACATTGATGC
* * * * * * * * * *
22705 TTTGGTTTCGTAAGAAACGC-TTTCTTCCCACCAATTTTT-ATA-ATGTCTAAGTTCGTTTCTCA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGATAGA-ATCAAAGTTCATCTCTTA
* * * ** * *
22767 AATGAGACAAACATGGATTGTAGTA-AAGATCT
127 AATAAGACAAACGT-GATAGTCTTACTA-ATCC
** * * * * ** * * *
22799 TTATTCATTTT-GTGATTAGGCACTACAAACGCATTCTCCTCAGT-AGGGTAAATGATATTGATG
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCA-TAAGGATACATGACATTGATG
* ** * * * * * * ** *
22862 ATTTTCTTGT-GCATGAAAATG-TTTCCTTT--GCCTTATTTTCCATAAAATCATTGTTCATCCC
63 CTTTGGTT-TCGCAAGAAAA-GCTTTTCTTTCAACCGT-TTTT-GATAGAATCAAAGTTCATCTC
** * ** * * *
22923 TTAAATAAGGGAAGCGTTGATTCTCATAAC-AGTCT
124 TTAAATAAGACAAACG-TGATAGTC-TTACTAATCC
* * * * * * * *
22958 CCATTCTTTTCATGGTTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACACTGAAGCT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGCT
* * * * **
23023 TTAGTGTCGCAAGAAAAGCTTTTCTTTGAACCGTTTTTGATGGAATCAAAGTTTGTCTCTCT-AA
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCT-TAAA
* *
23087 TAAGACAAAAGTGAATAGTCTTACCAATCC
129 TAAGACAAACGTG-ATAGTCTTACTAATCC
* * * * * ** *
23117 CCATTCTTTTCAAGATTAGGCACCATAAACATA-GT-CTCATAAGGATTCACGATTTTGACGCTT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATTTCCTCATAAGGATACATGACATTGATGCTT
* * * * * *
23180 TGGGTTCGCAAGAAAGGC-TTTCTTCTC-ACCAATTTTT-ATA-ATGTCTAAGTTCATGC-CTCA
66 TGGTTTCGCAAGAAAAGCTTTTCTT-TCAACC-GTTTTTGATAGA-ATCAAAGTTCAT-CTCTTA
* *
23240 AA-AGAGACAAACAAG-GAT--TCTAGTA-AAGATCT
127 AATA-AGACAAAC--GTGATAGTCT--TACTA-ATCC
* * * * * * * * * * *
23272 TCATTCATTT-AGTGATTACGCACTATAAACACATTCTGCTTA-ATAGGGTAAATGATATTGATG
1 CCATTCTTTTCA-TGATTAGGAACCATAAACATATT-TCCTCATA-AGGATACATGACATTGATG
* * * * * ** *
23335 ATTT--TCATCTGCATGGAAATG-TTTCCTTTGC--CC-TATTTTCCTTAAAATCAAAGTTCATC
63 CTTTGGT-TTC-GCA-AGAAAAGCTTTTCTTT-CAACCGT-TTTT-GATAGAATCAAAGTTCATC
* * * * * ** ** * * *
23394 CCTTAAAAAAGGCAAGCATTGATTCTCGAACCAGTCT
122 TCTTAAATAAGACAAAC-GTGATAGTCTTACTAATCC
* * * * * * * * * *
23431 CCATTATTTTCATGACT-GAGAACCAAAAACACATTCCCTTTTATTAGGATACTTCACATTGATA
1 CCATTCTTTTCATGATTAG-GAACCATAAACATATTTCC--TCATAAGGATACATGACATTGATG
** * ** *
23495 CTTTGGAGTCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTC-CAT
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCTTA-
* * *
23559 AATAAAACAAACCTGAATAGTCCTACTAATCCC
127 AATAAGACAAACGTG-ATAGTCTTACTAAT-CC
* * * *** * * * * *
23592 CCTTTCTTTTTAAGATTAGCTGCCATAAACATTGTCTTCCT-ATAAGGATGCACGATATTGACGC
1 CCATTCTTTTCATGATTAGGAACCATAAACA-TAT-TTCCTCATAAGGATACATGACATTGATGC
* * * * * * * * * * *
23656 TTTGGTTTCGTAGGGAACGC-TTTCTTCCCACCAATTTTT-ATCATG--TCTAAGTTCGTGTCTC
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGAT-A-GAATCAAAGTTCATCTCTT
* * * *
23717 AAATGAGACAAACATGGAT--TCTAGTA-AAGATCT
126 AAATAAGACAAACGT-GATAGTCT--TACTA-ATCC
* * * * ** * * * * *
23750 TCATTCATTTT-GTGATTAGGCACTATAAATGCAT-TCCCCCCATTAGGGTAAATGATATTGATG
1 CCATTC-TTTTCATGATTAGGAACCATAAA--CATATTTCCTCATAAGGATACATGACATTGATG
* * * * ** * * * * * * *
23813 ATTTTGTTTTGCATGAAAATTTTTTCTTT--GCCTTATTTTCCATAAAATCATAGTTTATCCCTT
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGT-TTTT-GATAGAATCAAAGTTCATCTCTT
* * * * *
23876 AAATAAGGCAAGA-GT-TTATTCTCATAAC-AGTCT
126 AAATAAGACAA-ACGTGATAGTCT--T-ACTAATCC
* * * * * * * *
23909 CCATTGTTTTCATGATTGGGAGCCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGCT
* ** ** * * * **
23974 TCGGAGTCATAAGAAAAGCTTTTCTTTCAACTGTTTCTGATAGAATCAATGTTTGTCTCTCT-AA
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCT-TAAA
24038 TAAGACAAACGTGAATAGT-TATACTAATCC
129 TAAGACAAACGTG-ATAGTCT-TACTAATCC
* * * * ** **
24068 CCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTT-CTCATAAGGATACACGATGTTGACAC
1 CCATTCTTTTCATGATTAGGAACCATAAACATA-T-TTCCTCATAAGGATACATGACATTGATGC
* * * * * * * * *
24132 TTTGGTTTCGTAAGAAAGGC-TTTCTTCCCACCGATTTTT-ACA-ATGTCTAAGTTCTTCCCTTA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCG-TTTTTGATAGA-ATCAAAGTTCATCTCTTA
* * * * *
24194 AATGAGACAAACATGGAT--TCTAGTAATGATCT
127 AATAAGACAAACGT-GATAGTCT--TACTAATCC
* * * * * * * * * **
24226 TCATTCAATTT-GTGATTAGGCACTATAAACACATTATCCTCATTAGGGTAAATGGTATTGATGA
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCATAAGGATACATGACATTGATG-
* ** * * * * * ** * *
24290 TTTTCATTT-GCATGGAAATG-TTTCCTTTGC--CC-TATTTTCCATAAAATCATTGCTCATCCC
63 CTTTGGTTTCGCA-AGAAAAGCTTTTCTTT-CAACCGT-TTTT-GATAGAATCAAAGTTCATCTC
* * ** * * *
24350 TTAAATAAGGCAAGCGTTGATTCTCATAAC-AGTCT
124 TTAAATAAGACAAACG-TGATAGTC-TTACTAATCC
* * * * * *
24385 CCATTCTTTTTAGGATT-GCGAACCA-AAAGCACATTCCCTTCATAGGGACACATGACATTGATG
1 CCATTCTTTTCATGATTAG-GAACCATAAA-CATATTTCC-TCATAAGGATACATGACATTGATG
* * * * *
24448 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAAACATTTTTGATCGAATCAAAGTTTGTATC-CTT
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAG-TT-CATCTCTT
* * *
24512 -AATAAGACAAACATGAATAGTCATACTAATCA
126 AAATAAGACAAACGTG-ATAGTCTTACTAATCC
* * * * *
24544 CCATTCCATTT-AGGATTAAGAACCATAAACATTGTTTTCC-CATAAGGATACATGATATTGATG
1 CCATT-CTTTTCATGATTAGGAACCATAAACA-T-ATTTCCTCATAAGGATACATGACATTGATG
* * * * * * * * * *
24607 CTTTGGTTTTGTAAGAAACG-TTTTCTTCCCACCAATTTTT-ATA-ATGTCTAAGTTCGTATCTT
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGATAGA-ATCAAAGTTCATCTCTT
* * * *
24669 AAATTAGACAAACATGGAT--TC-TAGTGAAGATCT
126 AAATAAGACAAACGT-GATAGTCTTACT--A-ATCC
* * * * * * * *
24702 TCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCA-ATAGGTTAAATGATATTGATG
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCATA-AGGATACATGACATTGATG
* ** * * * * ** * *
24765 ATTTTCATTT-GCATGAAAA--TGTTTCCTT-AGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
63 -CTTTGGTTTCGCAAGAAAAGCT-TTTCTTTCAACCGT-TTTT-GATAGAATCAAAGTTCATCTC
* * * ** ** * * *
24826 TTAAAAAAGGCAAGCGTTGATTCTCGAACCAGTCT
124 TTAAATAAGACAAACG-TGATAGTCTTACTAATCC
* * * ** * * *
24861 CCATTCTTTTCATGACT-GAGAACCACAAACACA-TTCCTTTTAGTAGGATACTTCACATTGATA
1 CCATTCTTTTCATGATTAG-GAACCATAAACATATTTCCTCATA--AGGATACATGACATTGATG
** * *
24924 CTTTGGAGTCGCAAGAAAACCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCGTCTCCTT-
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCT-CTTA
* * *
24988 AATAAAACAAACCTGAATAGTCATACTAATCC
127 AATAAGACAAACGTG-ATAGTCTTACTAATCC
* * * * * * *
25020 CCTTTTCTTTTCAAGATTAGGCACCATAAACATTGTCTTCCT-ATAAGGATACACGATATTGACG
1 CC-ATTCTTTTCATGATTAGGAACCATAAACA-TAT-TTCCTCATAAGGATACATGACATTGATG
* * * * * * * * * **
25084 TTTTGGTTTCGTAGGGAACGC-TTTCTTCCCACCAATTTTT-ATCATG--TCTAAGTTCATGACT
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGAT-A-GAATCAAAGTTCATCTCT
* * * * *
25145 CAAATGAGACAAACATGGAT--TCTAGTA-AAGATCT
125 TAAATAAGACAAACGT-GATAGTCT--TACTA-ATCC
* * * * * ** * * * * * *
25179 TCATTCATTTT-GTTATTAGGCACTATAAACGCATTCCCCTCATTAGGGTAAATGATATTGATGA
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCATAAGGATACATGACATTGATGC
* * * * * * * * * * ** *
25243 TTTTGTTTTGCATGGAAATG-TTTCCTTT--GCCTTATTTTCCAAAAAATCATTGTTCATCCCTT
64 TTTGGTTTCGCA-AGAAAAGCTTTTCTTTCAACCGT-TTTT-GATAGAATCAAAGTTCATCTCTT
* * ** * * *
25305 AAATAAGGCAAGCGTTGATTCTCGTAAC-AGTCT
126 AAATAAGACAAACG-TGATAGTC-TTACTAATCC
* * * * *
25338 CCATTCTTTTCATGGCTT-GGAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATCGATG
1 CCATTCTTTTCAT-GATTAGGAACCATAAACATATTTCC--TCATAAGGATACATGACATTGATG
* * * ** *
25401 CTTTGGTGTCGAAAGAAAAGCTTTTCTTTCAACAGTTTTTGATAGAATCAAAGTTTGTCTCTTTA
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCTTAA
** *
25466 ATAAGACAAATATGAATAGCCTTACTAATCC
128 ATAAGACAAACGTG-ATAGTCTTACTAATCC
* * * * *
25497 CCATTCTTTTTAGGATTAGGCACCATAAACAAAGTCTT-CTCATAAGGATACATGATATTGATGC
1 CCATTCTTTTCATGATTAGGAACCATAAACATA-T-TTCCTCATAAGGATACATGACATTGATGC
* * * * * *** * * * ** *
25561 TTTGGTTTTGGAAGAAAGGC-TTTCTTCGCATCAACTTTT-ATA-ATGTCTAATTTTGTGC-CTC
64 TTTGGTTTCGCAAGAAAAGCTTTTCTT-TCAACCGTTTTTGATAGA-ATCAAAGTTCAT-CTCTT
* * * * * * * * *
25622 GAGTGAGACAAGCTTGAATTGTAGTAAC-AATCT
126 AAATAAGACAAACGTG-ATAGT-CTTACTAATCC
* * * * * * * * * **
25655 TCATTCATTTT-GTGATTAGGCACTATAAACATATTCTCCTCATTAGGGTAAACGATATTGATTA
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCATAAGGATACATGACATTGATGC
** * * * * ** * ** * * *
25719 TTTTCTTTTGCATGGAAATG-TTTCCTTTGC--CC-TATTTTCCTTAAAATCGTAGTTAATTTCC
64 TTTGGTTTCGCA-AGAAAAGCTTTTCTTT-CAACCGT-TTTT-GATAGAATCAAAGTTCATCTCT
* * * ** * * *
25780 TAAATAAGGCAAGCTTTGATTCTCATAAC-AGTCT
125 TAAATAAGACAAAC-GTGATAGTC-TTACTAATCC
* * *
25814 CCATTCTTTTCATGATT-GCGAACTA-AAAGCACA-TTCCTTTCATAAGGATACATGACATTGAC
1 CCATTCTTTTCATGATTAG-GAACCATAAA-CATATTTCC--TCATAAGGATACATGACATTGAT
* * **
25876 GCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTT
62 GCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCT-CTT
* *
25941 -AATAAGACAAACATGAATAGTCATACTAATCC
126 AAATAAGACAAACGTG-ATAGTCTTACTAATCC
* * * * * * * *
25973 CCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCC-CAGAAGGATACACGATATTGACGA
1 CCATTCTTTTCATGATTAGGAACCATAAACA-TAT-TTCCTCATAAGGATACATGACATTGATGC
* * * * * * * * *
26037 TTTGGTTTCGTAAGAAACGC-TTTCTTCCCACCAATTTTT-ATA-ATGTCTAAGTTCATTTCTCA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGATAGA-ATCAAAGTTCATCTCTTA
* * * *
26099 AATGAGACAAACATAGAT--TCTAGTA-AAGATCT
127 AATAAGACAAACGT-GATAGTCT--TACTA-ATCC
** * * * * ** * * * * *
26131 TTATTCATTTT-GTGATTAGGCACTACAAACGCATTCTCCTCATTAGGGTAAATGATATTGATGA
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCATAAGGATACATGACATTGATGC
** * * * * * * * ** *
26195 TTTTCTTTTGCATGAAAATG-TTTCCTTT--GCCTTATTTTCCATAAAATCATTGTTCATCCCTT
64 TTTGGTTTCGCAAGAAAA-GCTTTTCTTTCAACCGT-TTTT-GATAGAATCAAAGTTCATCTCTT
* * * * * *
26257 AAATAAGGCAAGCGTTA-ATTCTCATAAC-AGTCT
126 AAATAAGACAAACGTGATAGTCT--T-ACTAATCC
* * * * * *
26290 CCATTCTTTTCATGGTTTGGAACCAAAAACACA-TTCCTTTCATTAGGATACATGACACTGATGC
1 CCATTCTTTTCATGATTAGGAACCATAAACATATTTCC--TCATAAGGATACATGACATTGATGC
* * * * * **
26354 TTTAGTGTCACAAGAAAAGCTTTTCTTTGAACCGTTTTTGATGGAATCAAAGTTTGTCTCTCT-A
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCT-TAA
* *
26418 ATAAGACAAAAGTGAATAGTCTTACCAATCC
128 ATAAGACAAACGTG-ATAGTCTTACTAATCC
* * * * * * ** *
26449 CCATTCTTTTCAGGATTAGGCACCATAAACATA-GT-CTCGTAAGGATTCACGATTTTGACGCTT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATTTCCTCATAAGGATACATGACATTGATGCTT
* * * * * * * *
26512 TGGGTTCGCACGAAAGGC-TTTCTTCTC-ACCAATTTTT-ACA-ATGTCTAAGTTCATGCT-TCA
66 TGGTTTCGCAAGAAAAGCTTTTCTT-TCAACC-GTTTTTGATAGA-ATCAAAGTTCAT-CTCTTA
* *
26572 AA-AGAGACAAACAAG-GAT--TCTAGTA-AAGATCT
127 AATA-AGACAAAC--GTGATAGTCT--TACTA-ATCC
* * * * * * * * * *
26604 TCATTCATTTT-GTGATTACGCACTATAAACACATTCTGCTCA-ATAGGGTAAATGATATTGATG
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCATA-AGGATACATGACATTGATG
* * * * ** *
26667 ATTT--TCATCTGCATAGAAATG-TTTCCTTTGC--CC-TATTTTCCTTAAAATCAAAGTTCATC
63 CTTTGGT-TTC-GCA-AGAAAAGCTTTTCTTT-CAACCGT-TTTT-GATAGAATCAAAGTTCATC
* * * * * ** ** * * *
26726 CCTTAAAAAAG-GAAGCAATGATTCTCGAACCAGTCT
122 TCTTAAATAAGACAAAC-GTGATAGTCTTACTAATCC
* * * * * ** * * *
26762 CCATTATTTTCATGACT-GAGAACCAAAAACACA-TTCGCTTTATTGGGATACTTCACATTGATA
1 CCATTCTTTTCATGATTAG-GAACCATAAACATATTTC-C-TCATAAGGATACATGACATTGATG
* * **
26825 CTTTGGATTCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTT-
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCT-CTTA
* * *
26889 AATAAAACAAACCTGAATAGTCATACTAATCC
127 AATAAGACAAACGTG-ATAGTCTTACTAATCC
* * * *** * * * * *
26921 CCTTTTCCTTTCAAGATTAGCTGCCATAAACATTGTCTTCCT-ATAAGGATGCACGATATTGACG
1 CC-ATTCTTTTCATGATTAGGAACCATAAACA-TAT-TTCCTCATAAGGATACATGACATTGATG
* * * * * * * * * *
26985 CTTTGGTTTCGTAGGGAACGC-TTTCTTCCCACCAATTTTT-ATCATG--TCTAAGTTCGTGTCT
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGAT-A-GAATCAAAGTTCATCTCT
* * * * *
27046 CAAATGAGACAAACATGGAT--TCTAGTA-AAGATCT
125 TAAATAAGACAAACGT-GATAGTCT--TACTA-ATCC
* * * ** * * * *
27080 TCATTCATTTT-GTGATTA-GACACTATAAATGCAT-TCCCCTCATTAGGGTAAATGATATTGAT
1 CCATTC-TTTTCATGATTAGGA-ACCATAAA--CATATTTCCTCATAAGGATACATGACATTGAT
* * * * ** * * * * * * *
27142 GATTTTGTTTTGCATGAAAATTTTTTCTTT--GCCTTATTTTCCATAAAATCATAGTTTATCCCT
62 GCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGT-TTTT-GATAGAATCAAAGTTCATCTCT
* * * * *
27205 TAAATAAGGCAAGA-GT-TTATTCTCGTAAC-AGTCT
125 TAAATAAGACAA-ACGTGATAGTCT--T-ACTAATCC
* * * * * * * *
27239 CCATTGTATTCATGATTGGGAGCCAAAAACATAATCCCTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGCT
* ** ** * * * ** *
27304 TCGGCGTCATAAGAAAAGCTTTTCTTTCAACTGTTTCTGATAGAATCAATGTTTGTCTCTTTAAT
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAAT
27369 AAGACAAACGTGAATAGT-TATACTAATCC
130 AAGACAAACGTG-ATAGTCT-TACTAATCC
* * * * ** **
27398 CCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTT-CTCATAAGGATACACGATGTTGACAC
1 CCATTCTTTTCATGATTAGGAACCATAAACATA-T-TTCCTCATAAGGATACATGACATTGATGC
* * * * * * * * * *
27462 TTTGGTTTCGTAAGAAAGGC-TTTCTTCCCACCGATTTTT-ACA-ATGTCTAAGTTCTTCCCTCA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCG-TTTTTGATAGA-ATCAAAGTTCATCTCTTA
* * * * **
27524 AATGAGACAAACATGGAT--TCTAGTAATGATTT
127 AATAAGACAAACGT-GATAGTCT--TACTAATCC
* * * * ** * * * * * ** *
27556 TCATTCAATTT-GTGATTAGGCATTATAAACACATTATCCTCTTTAGGGTAAATGGTATTGATGA
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCATAAGGATACATGACATTGATGC
** * * * * * * ** * *
27620 TTTTCTTTTGCATGGAAATG-TTTCCTTTGC--CC-TATTTTCCATAAAATCATTGCTCATCCCT
64 TTTGGTTTCGCA-AGAAAAGCTTTTCTTT-CAACCGT-TTTT-GATAGAATCAAAGTTCATCTCT
* * * ** * * *
27681 TAAATAAGGCAAGCTTTGATTCTCATAAC-AGTCT
125 TAAATAAGACAAAC-GTGATAGTC-TTACTAATCC
* * * * * *
27715 CCATTCTTTTTAGGATT-GCGAACCA-AAAGCACATTCCCTTCATAGGGATACAAGACATTGATG
1 CCATTCTTTTCATGATTAG-GAACCATAAA-CATATTTCC-TCATAAGGATACATGACATTGATG
* * * * * **
27778 CTTTGGTGTCGCAACAAAAGCTTTTCTTTCAAACATTTTTGATCGAATCAAAGTTTGTCTCCTT-
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCT-CTTA
* * *
27842 AATAAGACAAACTTGAATAGTCATACTAATCA
127 AATAAGACAAACGTG-ATAGTCTTACTAATCC
* * * *
27874 CCATTCCTTTT-AGGATTAAGAACCATAAACATTGTTTTCC-CATAAGGATACATGATATTGATG
1 CCATT-CTTTTCATGATTAGGAACCATAAACA-T-ATTTCCTCATAAGGATACATGACATTGATG
* * * * * * * * * *
27937 CTTTGGTTTTGTAAGAAACG-TTTTCTTCCCACCAATTTTT-ATA-ATGTCTAAGTTCGTATCTT
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGATAGA-ATCAAAGTTCATCTCTT
* * *
27999 AAATAAGACAAACATGGAT--TC-TAGTAAAGACC
126 AAATAAGACAAACGT-GATAGTCTTACT-AA-TCC
* * * * * ** * * *
28031 TTCATTGATTTT-GTGATTAGGCACTATAAACGCATTCTCCTCATTATGG-TAAATGATATTGAT
1 -CCATT-CTTTTCATGATTAGGAACCATAAACATATT-TCCTCA-TAAGGATACATGACATTGAT
* ** * * * * * * * * * ** *
28094 GATTTTCTTTTGCATGGGAATG-TTTCCTTT--GCCTTATTTTCCATAAAATCATTGTTCATCCC
62 GCTTTGGTTTCGCA-AGAAAAGCTTTTCTTTCAACCGT-TTTT-GATAGAATCAAAGTTCATCTC
* * ** * *
28156 TTAAATAAGGCAAGCGTTGATTCTCGTAAC-AATCT
124 TTAAATAAGACAAACG-TGATAGTC-TTACTAATCC
* * * * * * * * * *
28191 CCATTCTTTTCGTGGTTTGGAATCAAAAACACATTCCCTTTATTAGGATACATGACATCGATGCT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGCT
* ** * * *
28256 TTGGTGTCAAAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAAAATCAAAGTTCCTCTCTTTAAT
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAAT
* *
28321 AAGATAAACGTAAATAGTCTTACTAATCC
130 AAGACAAACGT-GATAGTCTTACTAATCC
* * * * *
28350 CCATTCTTTTTATGATTAGGAACCATAAACATAGTTTTCTCATAAGGATACACGATATTGACGCT
1 CCATTCTTTTCATGATTAGGAACCATAAACATA-TTTCCTCATAAGGATACATGACATTGATGCT
* * * * * * * * *
28415 TTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTT-ATA-ATGTCTAAGTTCTTCCCTCAA
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGATAGA-ATCAAAGTTCATCTCTTAA
* * * * *
28477 ATGAGACAAACATGGAT--TCTAGTAATGATCT
128 ATAAGACAAACGT-GATAGTCT--TACTAATCC
* * * * * * * * ** *
28508 TCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGGTATTGATGA
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTCATAAGGATACATGACATTGATGC
** * * * * * * *** *
28572 TTTTCTTTTGCATGAAAATG-TTTCCTTTGC--CC-TATTTTCCAAAAAATCTTTGTTCATCCCT
64 TTTGGTTTCGCAAGAAAA-GCTTTTCTTT-CAACCGT-TTTT-GATAGAATCAAAGTTCATCTCT
* * ** * * *
28633 GAAATAAGGA-AAGCGTTGATTCTCATAAC-AGTCT
125 TAAATAA-GACAAACG-TGATAGTC-TTACTAATCC
* * * * * *
28667 TCATTCTTTTCATGATTGGGAGA-CAAAAACAAATTTCCTTCATTAGGATACATGACATTGACGC
1 CCATTCTTTTCATGATTAGGA-ACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGC
* * * * * **
28731 TTCTTCGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTCTGATCGAATCAATGTTTGTCTCTT
64 -T-TT-GGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCTT
* *
28796 TAATAAGACAAACCTGAATAGT-TATACTAATCC
126 AAATAAGACAAACGTG-ATAGTCT-TACTAATCC
* * * * * * *
28829 CCATTCTTTTAAGGATTAGGCACCAAAAACATTGTTTTCC-CATAAGGATACACGATATTGATGC
1 CCATTCTTTTCATGATTAGGAACCATAAACA-T-ATTTCCTCATAAGGATACATGACATTGATGC
* * * * ** * * *
28893 TTTGGTCTT-GTAAGAAACGC-TTTCTTCCCACTAATTTTT-A-A-AATGTCTAAGTTCGTGTCT
64 TTTGGT-TTCGCAAGAAAAGCTTTTCTTTCAAC-CGTTTTTGATAGAA--TCAAAGTTCATCTCT
* * * * *
28953 AAAATGAGACAAACATGGAT--TCTAGTA-AAGATCT
125 TAAATAAGACAAACGT-GATAGTCT--TACTA-ATCC
* * * * * ** * * * *
28987 TCATTCATGTT-GTGATTAGGCACTATAAACGCATTCTCCTCGTTATGG-TAAATGATATTGATG
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTC-ATAAGGATACATGACATTGATG
* ** * * * * * * * * ** *
29050 ATTTTCTTTTGCATGGAAATG-TTTCCTTT--GCCTTATTTTCCATAAAATCATTGTTCATCCCT
63 CTTTGGTTTCGCA-AGAAAAGCTTTTCTTTCAACCGT-TTTT-GATAGAATCAAAGTTCATCTCT
* * ** * *
29112 TAAATAAGGCAAGCGTTGATTCTCGTAAC-AATCT
125 TAAATAAGACAAACG-TGATAGTC-TTACTAATCC
* * * * * * * * *
29146 CCATTCTTTTCGTGGTTTGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATCGATGCT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGCT
* ** * *
29211 TTGGTGTCAAAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTATTTAAT
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAAT
*
29276 AAGACAAATGTGAATAGTCTTACTAATCC
130 AAGACAAACGTG-ATAGTCTTACTAATCC
* * *
29305 CCATTCTTTTCATGATTAGGAACCATAAACATAGTTTTCTCATAAGGATACACGACATTGACGCT
1 CCATTCTTTTCATGATTAGGAACCATAAACATA-TTTCCTCATAAGGATACATGACATTGATGCT
* * * * * * * *
29370 TTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTT-ATA-ATGTCTAAGTTCGTGC-CTCA
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGATAGA-ATCAAAGTTCAT-CTCTTA
** * * * ** *
29431 AATGCGACAAACATGGT-TTC-TAGAAATGTTCT
127 AATAAGACAAACGTGATAGTCTTACTAA---TCC
* * * * * * * **
29463 TCATTCATTTT-GTGATTAGGCACTATAAACATATTCTCCTCTTTAGGGTTA-ATGGTATTGATG
1 CCATTC-TTTTCATGATTAGGAACCATAAACATATT-TCCTC-ATAAGGATACATGACATTGATG
* ** * * * * * * * *
29526 ATTTTCTTTTGCATGGAAATG-TTTCCTTTGC--CC-TATTTTCCATAAAATCATTA-TTCATCC
63 CTTTGGTTTCGCA-AGAAAAGCTTTTCTTT-CAACCGT-TTTT-GATAGAATCA-AAGTTCATCT
* ** * * *
29586 CTTAAATAAGGA-AAGCGTTGATTCTCGTAAC-AGTCT
123 CTTAAATAA-GACAAACG-TGATAGTC-TTACTAATCC
* * * * * * *
29622 CCATTCTTTTCATGGTTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATCGATGCT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGCT
* * * *
29687 TCGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCGAAGTTCATCTCTTTTAA
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTC-TTAAA
*
29752 TAAGACAAATGTGAATAGTCTTACTAATCC
129 TAAGACAAACGTG-ATAGTCTTACTAATCC
* * * **
29782 CCATTCTTTTCATGATTAGGAACTATAAACATAGTCTT-CTCATAAGGATACACGATATTGACAC
1 CCATTCTTTTCATGATTAGGAACCATAAACATA-T-TTCCTCATAAGGATACATGACATTGATGC
* * * * * * * * * * *
29846 TTTGGTTTTGTAGGAAAGGC-TTTCTTCCCACCAATTTTTGCA-A-AGTCTAAGTTCGTGC-CTC
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTG-ATAGAATCAAAGTTCAT-CTCTT
* * * * *
29907 AAATGAGTCAAGCATGGAT--TCTAGTGA-TGATCC
126 AAATAAGACAAACGT-GATAGTCT--T-ACTAATCC
* * * * * * * * * * * * * *
29940 CCATTCATTACATGACTAGGCACTATAAACACATTCTCATTATTAGGGTAAATGATATCGATGAT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATT-TCCTCATAAGGATACATGACATTGATGCT
** * * * * * * ** *
30005 TTTCTTTTGTATTGGAAATG-TTTCCTTT--ACCCTATTTTCCTTA-AATTCATAGTTCATCTCT
65 TTGGTTTCGCA--AGAAAAGCTTTTCTTTCAACCGT-TTTT-GATAGAA-TCAAAGTTCATCTCT
* * * ** * * *
30066 TGAATAAGGCAAGCGTTGATTCTCATAAC-AGTCT
125 TAAATAAGACAAACG-TGATAGTC-TTACTAATCC
* * * * * * *
30100 CCTTTCATTTCATGATTAGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATTTCC-TCATAAGGATACATGACATTGATGCT
* * * * *
30165 TTGGTGTCGTAAGAAAAGCTTTTCTTTCAACCTTTTTTGATAGAATCAATGTTCGTCTCTTAAAT
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAAT
*
30230 AAGACAAACATGAATAGTCTTACTAATCC
130 AAGACAAACGTG-ATAGTCTTACTAATCC
* * * * *
30259 CTATTCTTTTCATGATTAGGCACCATAAACATTGTTTTCC-CATAAGGATACACGATATTGATGC
1 CCATTCTTTTCATGATTAGGAACCATAAACA-T-ATTTCCTCATAAGGATACATGACATTGATGC
* * * * * * * * * *
30323 TTTGGTTTTGTAAGAAACGC-TTTCTTCCCACCAATTTTT-ATA-ATGTCTAAGTTCGTGTCTTA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGATAGA-ATCAAAGTTCATCTCTTA
* * ** * * *
30385 AATGAGACAAACATGGATTCTATTA-AAGATCT
127 AATAAGACAAACGT-GATAGTCTTACTA-ATCC
* * * * ** * * * * *
30417 TCATTCATTTT-GTAATTAGGCATTACAAATGCAT-TATCCTCATTATGG-TAAATGATATTGAT
1 CCATTC-TTTTCATGATTAGGAACCATAAA--CATATTTCCTCA-TAAGGATACATGACATTGAT
* ** * * * * * * *
30479 GATTTTCTTTTGTATGGAAATG-TTTCCTTTGC--CC-TATTT-ACCTTAAAATCAAAGTTCATC
62 GCTTTGGTTTCGCA-AGAAAAGCTTTTCTTT-CAACCGTTTTTGA---TAGAATCAAAGTTCATC
* * * ** * * *
30539 CCTTAAATAAGGCAAGCGTTGATTCTCGTACTAGTCT
122 TCTTAAATAAGACAAACG-TGATAGTCTTACTAATCC
* * * * * * * *
30576 CCATTCTTTTCACGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGACGCT
1 CCATTCTTTTCATGATTAGGAACCATAAACATATT-TCCTCATAAGGATACATGACATTGATGCT
* * * *
30641 TTGGTGTCGCAAGAATAGCTTTTCTTTCAACCGTTTTTTATAGAATCAAAGTTTATCTCTTAAAT
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAAT
* * *
30706 AAGAAAAACATGAATAGTCATACTAATCC
130 AAGACAAACGTG-ATAGTCTTACTAATCC
* * ** *
30735 CCATTCTTTTCA-GCATTCGGTAA-TATAAACATAGTCTT-CTCATAAGGATACATGATGTTAAT
1 CCATTCTTTTCATG-ATTAGG-AACCATAAACATA-T-TTCCTCATAAGGATACATGACATTGAT
* *
30797 GCTTTGGTTTTGTAAGAAA
62 GCTTTGGTTTCGCAAGAAA
30816 GTGATGAAAA
Statistics
Matches: 7007, Mismatches: 2318, Indels: 1510
0.65 0.21 0.14
Matches are distributed among these distances:
153 6 0.00
154 7 0.00
155 129 0.02
156 153 0.02
157 259 0.04
158 1947 0.28
159 3490 0.50
160 711 0.10
161 166 0.02
162 114 0.02
163 19 0.00
164 6 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (157 bp):
CCATTCTTTTCATGATTAGGAACCATAAACATATTTCCTCATAAGGATACATGACATTGATGCTT
TGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAATA
AGACAAACGTGATAGTCTTACTAATCC
Found at i:33290 original size:476 final size:476
Alignment explanation
Indices: 31515--33298 Score: 2581
Period size: 476 Copynumber: 3.8 Consensus size: 476
31505 TTGTCATCAA
*
31515 AAAGGCTTTCTTCCAACCAATTTTTATAATGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGA
1 AAAGGCTTTCTTCCAACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
31580 TTCTAGTAATGATCTTCATTCAATTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGGCA
66 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGGTA
** *
31645 AATGGCATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATT
131 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* * * * *
31710 GCTCAACCCTTAAATAAGGTAAGCGTTGATTCTCGTAACAGTCACCATTCTTTTCATGGTTGGGA
196 GTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGA
* * *
31775 ACCAAAAACACATTCCCTTCGTTAGGATAGATGACATTGATGCTTCGGTGTCACAAGAAAAGCTT
261 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
* * * *
31840 TTCTTTCAACCGTTTCTGATAGAATTAATGTTTGTCTCTTTAATAATTCAAACGTGAATAGTCAT
326 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAATTCAAACATGAATAGTCAT
*
31905 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
391 ACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
*
31970 CTGACGCTTTGGTTTTGCAAG
456 TTGACGCTTTGGTTTTGCAAG
** * * *
31991 AAAGGCTTTCTTTTAACCAATTTTTATAATGTCTAAGTTTGTGCCTCAAATGAGAAAAACATGAA
1 AAAGGCTTTCTTCCAACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
*
32056 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCAATAGGGTA
66 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGGTA
* * *
32121 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCTTTTGCCTTATTTTCCATAGAATCATA
131 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* * * *
32186 GTTTATCCCTTAAATAAGGCAAGAGTTGATTCTCGTAACAGTCTCCATTGTTTTCATGATGGGGA
196 GTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGA
*
32251 ACCAAAAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
261 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
* *
32316 TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAATTCAAAAATG-A-AGTCAT
326 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAATTCAAACATGAATAGTCAT
*
32379 ACT-ATCCCCATTCTTTTC-TGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGAT
391 ACTAATCCCCATTCTTTTCAT-GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT
* *
32442 ATTGACACTTTGGTTTTGCAGG
455 ATTGACGCTTTGGTTTTGCAAG
* ** * * *
32464 AAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAGCATGGA
1 AAAGGCTTTCTTCCAACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* ** *** * * * * *
32529 TTCTAGTAATGATCCCCATTCATTACATGACTAGGCACTATAAACACTTTCTCATTATTAGGGTA
66 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGGTA
* * *
32594 AATGATATCGATGATTTTCTTTTGCATTGGAAATGTTTCCTTTACCCTATTTTCCTTAAAATCAT
131 AATGATATTGATGATTTTCTTTTGCA-TGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCAT
* * *
32659 AGTTCATCCCTTGAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCTTTCATTTCATGATTGGG
195 AGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGG
* * * *
32724 AACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGAT
260 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCT
* ** *
32789 TTTCTTTCAACCTTTTTTGATAGAATCAAAGTTCATCTCTTTAATAAGAT-AAACATGAATAGTC
325 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAA-TTCAAACATGAATAGTC
* * * *
32853 TTACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATTGTTTTCCCATAAGGATACACGA
389 ATACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
* * *
32918 TTTTGATGCTTTGGTTTTGTAAG
454 TATTGACGCTTTGGTTTTGCAAG
** * * * *
32941 AAACTCTTTTTTCCCACCAATTTTTATAATGTCTAAGTTCGTGTCTTAAATGAGACAAACATGGA
1 AAAGGCTTTCTTCCAACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * *
33006 TTCTAGTAAAGATCTTCACTCATTTTGTGATTAGGCACTATAAACGCATTCTCCTCATTATGGTA
66 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGGTA
* * * * *
33071 AAAGATATTGATAATTTTCTTTTGCATGGAAATGTTTCCTTTGTCCTATTTTCCTTAAAATCAAA
131 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
* *
33136 GTTCAGCCCTTAAATAAGGCAAGCGTTGATTCTCGT-ACTAGTCTCCATTCTTTTCACGATTGGG
196 GTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAAC-AGTCTCCATTCTTTTCATGATTGGG
* * * *
33200 AACCAAAAACACATTCTCTTTATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
260 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCT
* *
33265 TTTCTTTCAATCGTTTTTTATAGAATCAAAGTTT
325 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTT
33299 ATCCCCATTC
Statistics
Matches: 1160, Mismatches: 140, Indels: 16
0.88 0.11 0.01
Matches are distributed among these distances:
473 208 0.18
474 210 0.18
475 5 0.00
476 535 0.46
477 201 0.17
478 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
AAAGGCTTTCTTCCAACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGGTA
AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCATA
GTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGA
ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAATTCAAACATGAATAGTCAT
ACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
TTGACGCTTTGGTTTTGCAAG
Found at i:35947 original size:476 final size:476
Alignment explanation
Indices: 33299--37167 Score: 5366
Period size: 476 Copynumber: 8.1 Consensus size: 476
33289 ATCAAAGTTT
* * * *
33299 ATCCCCATTCTTTTCAGGATTCGATG-A-CATAAACATAGTCTTCTTATAAGGATACATGATGTT
1 ATCCCCATTCTTTTCAGGATT--AGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT
* * * *
33362 GACGCTTTGGTTTTGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTCCCT
64 GACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAATTTCGTGCCT
*
33427 CAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCAATTTGTGATTAGGCACTATAAACA
129 CAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * **
33492 CATTATCCTCATTAGGGCAAATGGCATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCC
194 CATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCC
* * * *
33557 TATTTTCCATAAAATCATTGCTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCACC
259 TATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCC
* * * * *
33622 ATTCTTTTCATGGTTGGGAACCAAAAACACATTCCATTCGTGAGGATACATGACATTGATGCTTC
324 ATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * *
33687 GGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTCTAATAGAATCAATGTTTGTCTCTTTAATAA
389 GGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAA
**
33752 TTCAAACGTGAATAGTCATACTA
454 GACAAACGTGAATAGTCATACTA
* *
33775 AACCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATACTGA
1 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* ***
33840 TGCTTTGGTTTCGCAAGAAAGGCTTTCTTTTAACCAATTTTTATAATGTCTAAGTTT-GTGCCTC
66 CGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAA-TTTCGTGCCTC
* * *
33904 AAATGAGAAAAACATGGACTCTAGTAAAGATCTTCATTCATTTTGTGATTTGGCACTATAAACAC
130 AAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * *
33969 ATTCTCCTCAATAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCTTTTGCCTT
195 ATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT
* *
34034 ATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGAGTTGATTCTCGTAACAGTCTCCA
260 ATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCA
* * *
34099 TTGTTTTCATGATTGGGAACCAAAAACACATTCCATTCATTAGGATACATGACATTGATACTTTG
325 TTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
**
34164 GTGTCACAAGAAAAGC-TTTCTTTCAACAATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAG
390 GTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAG
** *
34228 ACAAAAATGAAGAGTCATACT-
455 ACAAACGTGAATAGTCATACTA
*
34249 ATCCCCATTCTTTTCAGGAATAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
1 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * * ** * * *
34314 CACTTTGGTTTCGTAGGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCA
66 CGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAATTTCGTGCCTCA
* * * * ** * *
34379 AATGAGTCAAGCATGGATTCTAGTAATGAT-TCCCATTCATTACGTGACTAGGCAATATAAACAC
131 AATGAGACAAACATGGATTCTAGTAAAGATCT-TCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * *
34443 AATCTCATTATTAGGGTAAATGATATCGATGATTTTCTTTTGCATTGGAAATGTTTCCTTTACCC
195 ATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCA-TGGAAATGTTTCCTTTGCCC
* *
34508 TATTTTCCTTAAAATCATAGTTCATCCCTTGAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCC
259 TATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCC
* * *
34573 TTTCATTTCATGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTT
324 ATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* *
34638 GGTGTCACAAGAAAAGCTTTTCTTTCAACCTTTTTTGATAGAATCAAAGTTCGTCTCTTTAATAA
389 GGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAA
* *
34703 GACAAACATGAATAGTCTTACTA
454 GACAAACGTGAATAGTCATACTA
* * ** * * * *
34726 ATTCCCATTCTTTTCATGATTAGGTGCCATAAACATAGTTTTCTCGTAAGGATACATGATATTTA
1 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * * ** * *
34791 CACTTTGGTTTTGCAAGAAAGG-ATTCTTTCCCACCAATTTTGGTAAGGTCTACA-TTCATGCCT
66 CGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCACCAATTTTTATAATGTCTA-ATTTCGTGCCT
* * * *
34854 CAAATGTGACAAACCTGGACTCTAGAAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
129 CAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * *
34919 CATTCTCCTCATTAGGGTAAATGGTATTGAAGATTTTCTTTTGCTTGGAAATGTTTCCTTTGCCC
194 CATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCC
* * *
34984 TATTTTCCATATAAA-CAT-TTTCATCCCTTAAATAAGGAAAGTGTTGATTCTCGTAACAGTCTC
259 TATTTTCCATA-AAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTC
*
35047 CATTCTTTTCATGATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
323 CATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * *
35112 TGGTGTCACAAGAAAAGCTTTTCTTTCAATCGTTTTTTATAGAAGCAAAGTTTGTCTCTTAAATA
388 TGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATA
* ** *
35177 TGACAAACAAGAATAGTCATAGTA
453 AGACAAACGTGAATAGTCATACTA
* * * *
35201 ATCCCTATTATTTTTAGGATTAGGCACCATAAACATAG---TCTCATAAGGATTCACGATATTGA
1 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * *
35263 CGCTTTGGGTTCGCAAGAAAGGCTTTCTTTCCACCAATTTTTATAGTGTCTAAGTTT-GTGCCTC
66 CGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAA-TTTCGTGCCTC
* * * * * *
35327 AAATGTGACAAACAAGGATTATAGTAATGATCTTCATTCATTTTGTGATTGGGCACTACAAACAC
130 AAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * * *
35392 ATTCTCCTCATGAGGGCAAATGATATTGACGATTTTTTTTTGCACGGAAATGTTTCCTTTACCCT
195 ATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT
* * * *
35457 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATACCAGTCTCCA
260 ATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCA
* * * * * **
35522 TTCTTTTCATGATTGAGAACCAAAAACATATTCCATTCATTAGGGTA-ATTCACATTGACACTTT
325 TTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA-TGACATTGATGCTTT
* * *
35586 GGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAATTTGTCTTTTTAATAA
389 GGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAA
*
35651 GACAAATGTGAATAGTC-TGACTA
454 GACAAACGTGAATAGTCAT-ACTA
*
35674 ATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
1 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * * *
35739 TGCTTTAGATTT-GGAAGAAAGGCTTTCTTCGCACCAATTTTTATAATGTCTAATTTCGTGCCTC
66 CGCTTT-GGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAATTTCGTGCCTC
* *
35803 AAATGAGACAAACATGAATTGTAGTAACA-ATCTTCATTCATTTTGTGATTAGGCACTATAAACA
130 AAATGAGACAAACATGGATTCTAGTAA-AGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
*
35867 CATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATGGAAATGTTTCCTTTGCCC
194 CATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCC
* * * * *
35932 TATTTTCCATAAAATCATAATTCATCCCCTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCC
259 TATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCC
* *
35997 ATTCTTTTCATGATTGCGAACCAAAAACACATTCCCTTCATAAGGATACATGACATTGATGCTTT
324 ATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * *
36062 GTTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCGCCTTAATAA
389 GGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAA
*
36127 GACAAACGTAAATAGTCATACTA
454 GACAAACGTGAATAGTCATACTA
* * * *
36150 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACCTTA-TCTTCCCATAAAGATACATGATATTG
1 ATCCCCATTCTTTTCAGGATTAGGCACCATAAA-CATAGTCTTCTCATAAGGATACACGATATTG
** * * * * * *
36214 AAACTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATGATGTCTAAGTTCATGTCTC
65 ACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAATTTCGTGCCTC
* * * *
36279 GAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTCTATGATTAGGCACTATAAACGC
130 AAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * *
36344 ATTCTCCTCATCAGGGTAAATGATATTGATGATTTTCTTTTGCGTGGAAATGTTTCCTTTGGCTT
195 ATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT
* * *
36409 ATTTTCCATAAAATCTTTGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTGCA
260 ATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCA
* * *
36474 TTCTTTTCATGGTTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATCGATGCTTTG
325 TTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
* * * *
36539 GTGTCGCAAGAAAAGCTTTTTTTTTAACCGTTTTTGATAGAATCAAAGTTCGTCTCTTTAATAAG
390 GTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAG
* *
36604 ACAAACGTGAACAGTCTTACTA
455 ACAAACGTGAATAGTCATACTA
* * *
36626 ATCCCCATTCTTTTCATGATTAGGCACCATAAACGTAGTTTTCTCATAAGGATACACGATATTGA
1 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * *
36691 CGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCGATTTTTTTAATGTCTAAGTTT-GTGCATC
66 CGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAA-TTTCGTGCCTC
* * * *
36755 AAATGTGACAAACATGGATTCCAGAAAAGATCTTCATTCATTTTGTGATTAGGCATTATAAACAC
130 AAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * * *
36820 ATTCTCCTCATTAGGGTAAATGGTTTTGATGATTTTCTTCTACACGGAAATGTTTTCTTTGCCCT
195 ATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT
** * *
36885 ATTTTCCATAAAATCATTTTTCATCCCTTAAATAAGGAAAGTGTTGATTCTCGTAACAGTCTCCA
260 ATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCA
* * * *
36950 TTCTTTTCATGATTGGGAGCCAAAAACGCATTCCCTTCATTAGGATACTTGACATTGATGCTTCG
325 TTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
** ** * *
37015 GTGTTGCAAGAAAAGCTTTTCTTTCAACCGAATCTGATAGAATCAATGTTTGTCTCTTTAATAAG
390 GTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAG
*
37080 ACAAACGTGAATAGTCTTACTA
455 ACAAACGTGAATAGTCATACTA
* *
37102 ATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTGATAAGGATACACGATACTTG
1 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA-TTG
37167 A
65 A
37168 TGACAACCAT
Statistics
Matches: 2987, Mismatches: 373, Indels: 65
0.87 0.11 0.02
Matches are distributed among these distances:
471 4 0.00
472 192 0.06
473 214 0.07
474 204 0.07
475 437 0.15
476 1720 0.58
477 214 0.07
478 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
CGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAATTTCGTGCCTCA
AATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
TTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTA
TTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCAT
TCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
TGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGA
CAAACGTGAATAGTCATACTA
Found at i:36570 original size:952 final size:952
Alignment explanation
Indices: 31515--37167 Score: 7491
Period size: 950 Copynumber: 6.0 Consensus size: 952
31505 TTGTCATCAA
* * *
31515 AAAGGCTTTCTTCCAACCAATTTTTATAATGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGA
1 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
* *
31580 TTCTAGTAATGATCTTCATTCAATT-TGTGATTAGGCACTATAAACACATTATCCTCATTAGGGC
66 TTCTAGTAAAGATCTTCATTC-ATTCTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGC
** *
31644 AAATGGCATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCAT
130 AAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTACCCTATTTTCCATAAAATCAT
* * * * * *
31709 TGCTCAACCCTTAAATAAGGTAAGCGTTGATTCTCGTAACAGTCACCATTCTTTTCATGGTTGGG
195 AGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTGGG
* * * *
31774 AACCAAAAACACATTCCCTTCGTTAGGATAGATGACATTGATGCTTCGGTGTCACAAGAAAAGCT
260 AACCAAAAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCT
* * * * ** *
31839 TTTCTTTCAACCGTTTCTGATAGAATTAATGTTTGTCTCTTTAATAATTCAAACGTGAATAGTCA
325 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCGTCTCTTTAATAAGACAAACGTGAATAGTCT
31904 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT
390 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT
* * ***
31969 ACTGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTTTAACCAATTTTTATAATGTCTAAGTTTGTG
455 ATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTTGTG
* * * *
32034 CCTCAAATGAGAAAAACATGAATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAA
520 CCTCAAATGAGACAAACATGGACTCTAGAAAAGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
32099 ACACATTATCCTCAATAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCTTTTG
585 ACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATGGAAATGTTTCCTTTG
* * *
32164 CCTTATTTTCCATAGAATCATAGTTT-ATCCCTTAAATAAGGCAAG-AGTTGATTCTCGTAACAG
650 CCCTATTTTCCATAAAATCATA-TTTCATCCCTTAAATAAGGAAAGTA-TTGATTCTCGTAACAG
* * *
32227 TCTCCATTGTTTTCATGATGGGGAACCAAAAACACATTCCATTCATTAGGATACATGACATTGAT
713 TCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* *
32292 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTT
778 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTT
** ** * * *
32357 AATAATTCAAAAAT-GA-AGTCATACT-ATCCCCATTCTTTTCTGGATTAGGCACCATAAACGTA
843 AATAAGACAAACGTAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * *
32419 GTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTTGCAGG
908 GTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGTAAG
** * * * *
32464 AAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAGCATGGA
1 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
* ** * * * * * *
32529 TTCTAGTAATGATCCCCATTCATTAC-ATGACTAGGCACTATAAACACTTTCTCATTATTAGGGT
66 TTCTAGTAAAGATCTTCATTCATT-CTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGC
* *
32593 AAATGATATCGATGATTTTCTTTTGCATTGGAAATGTTTCCTTTACCCTATTTTCCTTAAAATCA
130 AAATGATATTGATGATTTTCTTTTGCA-TGGAAATGTTTCCTTTACCCTATTTTCCATAAAATCA
* * * * *
32658 TAGTTCATCCCTTGAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCTTTCATTTCATGATTGG
194 TAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTGG
* * * * *
32723 GAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGA
259 GAACCAAAAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGC
* * * *
32788 TTTTCTTTCAACCTTTTTTGATAGAATCAAAGTTCATCTCTTTAATAAGATAAACATGAATAGTC
324 TTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCGTCTCTTTAATAAGACAAACGTGAATAGTC
* * * *
32853 TTACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATTGTTTTCCCATAAGGATACACGA
389 TTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
* * * * ** * *
32918 TTTTGATGCTTTGGTTTTGTAAGAAACTCTTTTTTCCCACCAATTTTTATAATGTCTAAGTTCGT
454 TATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTTGT
* * * * *
32983 GTCTTAAATGAGACAAACATGGATTCTAGTAAAGATCTTCACTCATTTTGTGATTAGGCACTATA
519 GCCTCAAATGAGACAAACATGGACTCTAGAAAAGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
33048 AACGCATTCTCCTCATTATGGTAAAAGATATTGATAATTTTCTTTTGCATGGAAATGTTTCCTTT
584 AACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATGGAAATGTTTCCTTT
* * * * * * **
33113 GTCCTATTTTCCTTAAAATCAAAGTTCAGCCCTTAAATAAGGCAAGCGTTGATTCTCGT-ACTAG
649 GCCCTATTTTCCATAAAATCATATTTCATCCCTTAAATAAGGAAAGTATTGATTCTCGTAAC-AG
* * * *
33177 TCTCCATTCTTTTCACGATTGGGAACCAAAAACACATTCTCTTTATTAGGATACTTGACATTGAT
713 TCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
*
33242 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTT----C-----------AATC---G-TT-T-T--TT
778 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTT
* *
33284 -AT-AG---AA--TCAA-AGT--T--T-ATCCCCATTCTTTTCAGGATTCGATG-A-CATAAACA
843 AATAAGACAAACGTAAATAGTCATACTAATCCCCATTCTTTTCAGGATT--AGGCACCATAAACA
* * * * *
33334 TAGTCTTCTTATAAGGATACATGATGTTGACGCTTTGGTTTTGTAAG
906 TAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGTAAG
* *
33381 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGA
1 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
*
33446 TTCTAGTAAAGATCTTCATTCAATT-TGTGATTAGGCACTATAAACACATTATCCTCATTAGGGC
66 TTCTAGTAAAGATCTTCATTC-ATTCTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGC
** *
33510 AAATGGCATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCAT
130 AAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTACCCTATTTTCCATAAAATCAT
* * *
33575 TGCTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCACCATTCTTTTCATGGTTGGG
195 AGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTGGG
* * *
33640 AACCAAAAACACATTCCATTCGTGAGGATACATGACATTGATGCTTCGGTGTCACAAGAAAAGCT
260 AACCAAAAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCT
* * * * ** *
33705 TTTCTTTCAACCGTTTCTAATAGAATCAATGTTTGTCTCTTTAATAATTCAAACGTGAATAGTCA
325 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCGTCTCTTTAATAAGACAAACGTGAATAGTCT
*
33770 TACTAAACCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT
390 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT
* * ***
33835 ACTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTTTAACCAATTTTTATAATGTCTAAGTTTGTG
455 ATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTTGTG
* * *
33900 CCTCAAATGAGAAAAACATGGACTCTAGTAAAGATCTTCATTCATTTTGTGATTTGGCACTATAA
520 CCTCAAATGAGACAAACATGGACTCTAGAAAAGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * *
33965 ACACATTCTCCTCAATAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCTTTTG
585 ACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATGGAAATGTTTCCTTTG
* *
34030 CCTTATTTTCCATAAAATCATAGTTT-ATCCCTTAAATAAGGCAAG-AGTTGATTCTCGTAACAG
650 CCCTATTTTCCATAAAATCATA-TTTCATCCCTTAAATAAGGAAAGTA-TTGATTCTCGTAACAG
* *
34093 TCTCCATTGTTTTCATGATTGGGAACCAAAAACACATTCCATTCATTAGGATACATGACATTGAT
713 TCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* ** *
34158 ACTTTGGTGTCACAAGAAAAGC-TTTCTTTCAACAATTTTTGATAGAATCAAAGTTTGTCTCTTT
778 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTT
** * * *
34222 AATAAGACAAAAATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGAATAGGCACCATAAACATA
843 AATAAGACAAACGTAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
*
34286 GTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGTAGG
908 GTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGTAAG
** * * *
34331 AAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGTCAAGCATGGA
1 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
* * * * * * *
34396 TTCTAGTAATGAT-TCCCATTCATTAC-GTGACTAGGCAATATAAACACAATCTCATTATTAGGG
66 TTCTAGTAAAGATCT-TCATTCATT-CTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGG
* * *
34459 TAAATGATATCGATGATTTTCTTTTGCATTGGAAATGTTTCCTTTACCCTATTTTCCTTAAAATC
129 CAAATGATATTGATGATTTTCTTTTGCA-TGGAAATGTTTCCTTTACCCTATTTTCCATAAAATC
* * * * *
34524 ATAGTTCATCCCTTGAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCTTTCATTTCATGATTG
193 ATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTG
* *
34589 GGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAG
258 GGAACCAAAAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAG
* *
34654 CTTTTCTTTCAACCTTTTTTGATAGAATCAAAGTTCGTCTCTTTAATAAGACAAACATGAATAGT
323 CTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCGTCTCTTTAATAAGACAAACGTGAATAGT
* * ** * * *
34719 CTTACTAATTCCCATTCTTTTCATGATTAGGTGCCATAAACATAGTTTTCTCGTAAGGATACATG
388 CTTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* * * * ** *
34784 ATATTTACACTTTGGTTTTGCAAGAAAGG-ATTCTTTCCCACCAATTTTGGTAAGGTCTACA-TT
453 ATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCACCAATTTTTATAATGTCTA-AGTT
** * *
34847 CATGCCTCAAATGTGACAAACCTGGACTCTAGAAAAGATCTTCATTCATTTTGTGATTAGGCACT
516 TGTGCCTCAAATGAGACAAACATGGACTCTAGAAAAGATCTTCATTCATTTTGTGATTAGGCACT
* * * *
34912 ATAAACACATTCTCCTCATTAGGGTAAATGGTATTGAAGATTTTCTTTTGCTTGGAAATGTTTCC
581 ATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATGGAAATGTTTCC
*
34977 TTTGCCCTATTTTCCATATAAA-CAT-TTTCATCCCTTAAATAAGGAAAGTGTTGATTCTCGTAA
646 TTTGCCCTATTTTCCATA-AAATCATATTTCATCCCTTAAATAAGGAAAGTATTGATTCTCGTAA
*
35040 CAGTCTCCATTCTTTTCATGATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATT
710 CAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* * *
35105 GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAATCGTTTTTTATAGAAGCAAAGTTTGTCT-
775 GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * * * *
35169 CTTAAATATGACAAAC-AAGAATAGTCATAGTAATCCCTATTATTTTTAGGATTAGGCACCATAA
840 CTT-AATAAGACAAACGTA-AATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAA
* * * *
35233 ACATAG---TCTCATAAGGATTCACGATATTGACGCTTTGGGTTCGCAAG
903 ACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGTAAG
* * ** * *
35280 AAAGGCTTTCTTTCCACCAATTTTTATAGTGTCTAAGTTTGTGCCTCAAATGTGACAAACAAGGA
1 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
* * * * * *
35345 TTATAGTAATGATCTTCATTCATTTTGTGATTGGGCACTACAAACACATTCTCCTCATGAGGGCA
66 TTCTAGTAAAGATCTTCATTCATTCTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGCA
* * * * *
35410 AATGATATTGACGATTTTTTTTTGCACGGAAATGTTTCCTTTACCCTATTTTCCTTAAAATCAAA
131 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTACCCTATTTTCCATAAAATCATA
* * *
35475 GTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATACCAGTCTCCATTCTTTTCATGATTGAGA
196 GTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTGGGA
* * * ** *
35540 ACCAAAAACATATTCCATTCATTAGGGTA-ATTCACATTGACACTTTGGTGTCGCAAGAAAAGCT
261 ACCAAAAACACATTCCATTCATTAGGATACA-TGACATTGATGCTTTGGTGTCACAAGAAAAGCT
* * * *
35604 TTTCTTTCAACCGTTTTTGATAGAATCAAAATTTGTCTTTTTAATAAGACAAATGTGAATAGTCT
325 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTCGTCTCTTTAATAAGACAAACGTGAATAGTCT
* *
35669 GACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT
390 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT
* * * *
35734 ATTGATGCTTTAGATTT-GGAAGAAAGGCTTTCTTCGCACCAATTTTTATAATGTCTAA-TTTCG
455 ATTGACGCTTT-GGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTT-G
* * * *
35797 TGCCTCAAATGAGACAAACATGAATTGTAGTAACA-ATCTTCATTCATTTTGTGATTAGGCACTA
518 TGCCTCAAATGAGACAAACATGGACTCTAG-AAAAGATCTTCATTCATTTTGTGATTAGGCACTA
35861 TAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATGGAAATGTTTCCT
582 TAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATGGAAATGTTTCCT
* * * * * *
35926 TTGCCCTATTTTCCATAAAATCATAATTCATCCCCTAAATAAGGCAAGCATTGATTCTCATAATA
647 TTGCCCTATTTTCCATAAAATCATATTTCATCCCTTAAATAAGGAAAGTATTGATTCTCGTAACA
* *
35991 GTCTCCATTCTTTTCATGATTGCGAACCAAAAACACATTCCCTTCATAAGGATACATGACATTGA
712 GTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* *
36056 TGCTTTGTTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCGCCT
777 TGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCT
*
36121 TAATAAGACAAACGTAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACCT
842 TAATAAGACAAACGTAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA-CA
* * * *
36186 TA-TCTTCCCATAAAGATACATGATATTGAAACTTTGGTTTCGTAAG
906 TAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGTAAG
* * * *
36232 AAACGCTTTCTTCCCACCAATTTTTATGATGTCTAAGTTCATGTCTCGAATGAGACAAACATGGA
1 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
* * * *
36297 TTCTAGTAAAGATCTTCATTCATTCTATGATTAGGCACTATAAACGCATTCTCCTCATCAGGGTA
66 TTCTAGTAAAGATCTTCATTCATTCTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGCA
* ** * * *
36362 AATGATATTGATGATTTTCTTTTGCGTGGAAATGTTTCCTTTGGCTTATTTTCCATAAAATCTTT
131 AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTACCCTATTTTCCATAAAATCATA
* * *
36427 GTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTGCATTCTTTTCATGGTTTGGA
196 GTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTGGGA
* * *
36492 ACCAAAAACACATTCCCTTCATTAGGATACATGACATCGATGCTTTGGTGTCGCAAGAAAAGCTT
261 ACCAAAAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
* * *
36557 TTTTTTTAACCGTTTTTGATAGAATCAAAGTTCGTCTCTTTAATAAGACAAACGTGAACAGTCTT
326 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTCGTCTCTTTAATAAGACAAACGTGAATAGTCTT
* * *
36622 ACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACGTAGTTTTCTCATAAGGATACACGATA
391 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* *
36687 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCGATTTTTTTAATGTCTAAGTTTGTGC
456 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTTGTGC
* * * * *
36752 ATCAAATGTGACAAACATGGATTCCAGAAAAGATCTTCATTCATTTTGTGATTAGGCATTATAAA
521 CTCAAATGAGACAAACATGGACTCTAGAAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * *
36817 CACATTCTCCTCATTAGGGTAAATGGTTTTGATGATTTTC-TTCTACACGGAAATGTTTTCTTTG
586 CACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTC-GCATGGAAATGTTTCCTTTG
* *
36881 CCCTATTTTCCATAAAATCATTTTTCATCCCTTAAATAAGGAAAGTGTTGATTCTCGTAACAGTC
650 CCCTATTTTCCATAAAATCATATTTCATCCCTTAAATAAGGAAAGTATTGATTCTCGTAACAGTC
* * *
36946 TCCATTCTTTTCATGATTGGGAGCCAAAAACGCATTCCCTTCATTAGGATACTTGACATTGATGC
715 TCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* ** ** * * *
37011 TTCGGTGTTGCAAGAAAAGCTTTTCTTTCAACCGAATCTGATAGAATCAATGTTTGTCTCTTTAA
780 TTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAA
* * *
37076 TAAGACAAACGTGAATAGTCTTACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGT
845 TAAGACAAACGTAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
*
37141 CTTCTGATAAGGATACACGATACTTGA
910 CTTCTCATAAGGATACACGATA-TTGA
37168 TGACAACCAT
Statistics
Matches: 4099, Mismatches: 519, Indels: 168
0.86 0.11 0.04
Matches are distributed among these distances:
915 7 0.00
916 564 0.14
917 205 0.05
918 4 0.00
919 3 0.00
920 1 0.00
921 4 0.00
922 2 0.00
925 1 0.00
926 2 0.00
927 2 0.00
929 1 0.00
930 5 0.00
931 2 0.00
932 1 0.00
933 1 0.00
934 2 0.00
935 5 0.00
936 1 0.00
938 2 0.00
939 2 0.00
940 2 0.00
943 2 0.00
945 3 0.00
946 4 0.00
947 7 0.00
948 444 0.11
949 522 0.13
950 902 0.22
951 513 0.13
952 875 0.21
953 8 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (952 bp):
AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
TTCTAGTAAAGATCTTCATTCATTCTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGCA
AATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTACCCTATTTTCCATAAAATCATA
GTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCATGGTTGGGA
ACCAAAAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
TTCTTTCAACCGTTTTTGATAGAATCAAAGTTCGTCTCTTTAATAAGACAAACGTGAATAGTCTT
ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
TTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTTGTGC
CTCAAATGAGACAAACATGGACTCTAGAAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAA
CACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATGGAAATGTTTCCTTTGC
CCTATTTTCCATAAAATCATATTTCATCCCTTAAATAAGGAAAGTATTGATTCTCGTAACAGTCT
CCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
TTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTAAT
AAGACAAACGTAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
TTCTCATAAGGATACACGATATTGACACTTTGGTTTCGTAAG
Found at i:42161 original size:9 final size:9
Alignment explanation
Indices: 42137--42210 Score: 73
Period size: 9 Copynumber: 8.6 Consensus size: 9
42127 CCTGTCATCC
*
42137 CTCCTCTCT
1 CTCCTATCT
*
42146 CTACTATCT
1 CTCCTATCT
42155 CTCCTATCT
1 CTCCTATCT
42164 CTCCT-TCT
1 CTCCTATCT
* *
42172 AT-C-ATCC
1 CTCCTATCT
42179 CTCCTATCT
1 CTCCTATCT
**
42188 CTATTATCT
1 CTCCTATCT
42197 CTCCTATCT
1 CTCCTATCT
42206 CTCCT
1 CTCCT
42211 CATGTCATCC
Statistics
Matches: 51, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
7 4 0.08
8 5 0.10
9 42 0.82
ACGTcount: A:0.12, C:0.43, G:0.00, T:0.45
Consensus pattern (9 bp):
CTCCTATCT
Found at i:42177 original size:42 final size:42
Alignment explanation
Indices: 42122--42225 Score: 156
Period size: 42 Copynumber: 2.5 Consensus size: 42
42112 TTCTTCTCTC
* *
42122 CTCCTCCTGTCATCCCTCCTCTCTCTACTATCTCTCCTATCT
1 CTCCTTCTGTCATCCCTCCTATCTCTACTATCTCTCCTATCT
* *
42164 CTCCTTCTATCATCCCTCCTATCTCTATTATCTCTCCTATCT
1 CTCCTTCTGTCATCCCTCCTATCTCTACTATCTCTCCTATCT
42206 CTCC-TCATGTCATCCCTCCT
1 CTCCTTC-TGTCATCCCTCCT
42226 TTCTTTTCTT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
41 2 0.04
42 54 0.96
ACGTcount: A:0.12, C:0.45, G:0.02, T:0.41
Consensus pattern (42 bp):
CTCCTTCTGTCATCCCTCCTATCTCTACTATCTCTCCTATCT
Found at i:42240 original size:42 final size:41
Alignment explanation
Indices: 42122--42240 Score: 132
Period size: 42 Copynumber: 2.8 Consensus size: 41
42112 TTCTTCTCTC
* * *
42122 CTCCTCCTGTCATCCCTCCTCTCTCTACTATCTCTCCTATCT
1 CTCCT-CTGTCATCCCTCCTATCTTTTCTATCTCTCCTATCT
* *
42164 CTCCTTCTATCATCCCTCCTATCTCTAT-TATCTCTCCTATCT
1 CTCC-TCTGTCATCCCTCCTATCT-TTTCTATCTCTCCTATCT
* *
42206 CTCCTCATGTCATCCCTCCTTTCTTTTCTTTCTCT
1 CTCCTC-TGTCATCCCTCCTATCTTTTCTATCTCT
42241 TTGAGGGCTA
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
41 4 0.06
42 59 0.92
43 1 0.02
ACGTcount: A:0.10, C:0.43, G:0.02, T:0.45
Consensus pattern (41 bp):
CTCCTCTGTCATCCCTCCTATCTTTTCTATCTCTCCTATCT
Found at i:44733 original size:476 final size:476
Alignment explanation
Indices: 43842--49077 Score: 7057
Period size: 476 Copynumber: 11.1 Consensus size: 476
43832 TCGTCAATAC
* * ** * *
43842 TGACGCTTTGGTTTTGCAAGAAAGGCTTTTTTTTCACCAATTTTTATAATGTCTAAGTTTGTACC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCC
* * * *
43907 TCAAATGAGATAAAAAAGGATTCTAGTAATCATCTTCATT-ATTTTGTGATTAGGCAC-----AC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * *
43966 ACATTCTCCTCATGAGGGTAAATGATGTTGATGATTTTTTTTTGCATGGAAATGTTTCCTTTGCC
131 ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
* * * *
44031 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAATCGTTGATTC-CTGT-ACTAGTC
196 CTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGATTCTC-GTAAC-AGTC
* * * * *
44094 TCCATTATTTTCATGATTGGGAACCAAAAACGCATTCCCTACATTAGGATACTTGACATTGACGC
259 TCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * * * **
44159 TTTTGTGTCACAAGAATACCTTTTCATTCAACTGTTTTTTATAGAATCAAAGTTTATCTCTGAAA
324 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAA
*
44224 TAAGACAAACA-TGAATAGTCATACTAATCCCCATTCTTTTCAGGATTCA-GCACCATAAATATA
389 TAAGACAAA-AGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATT-AGGCACCATAAACATA
*
44287 GTCTTCTCATAAGGATACACGATGT
452 GTCTTCTCATAAGGATACACGATAT
* * *
44312 TAACACTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGT-CG
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGC-
*
44376 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAATTTGTGATTAGGCACTATAAA
65 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
44441 CACATTCTCCTCATTAGGGTAAATGGTAATGATGATTTTCATTTGCATGGAAATGTCTCCTTTGC
130 CACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGC
* * * *
44506 CTTATTTTCCATAAAATCATTGTTTATCCCTTAATTAAGGCAAGCGTTGATTCTCGTAACAGTCA
195 CCTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCT
* *
44571 CCATTCTTTTCATTG-TTGGGAACCAAAAACACATTCTCTTCGTTAGGATACATGACATTGATGC
260 CCATTCTTTTCA-TGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * **
44635 TTTAGTGTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATTGAAGTTTGTCTCTTTAA
324 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAA
* * * * **
44700 TAAGACAAAAGTGAATAGTCTTGCCAATCCCCATTCTTTTTAGGATTAGGTGCCATAAACATAG-
389 TAAGACAAAAGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
*
44764 --TCTCATAAGGATTCACGATAT
454 CTTCTCATAAGGATACACGATAT
* * *
44785 TGACGCTTTGGGTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTATAATGTCTAAGTTCATGCC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCC
* *
44850 TCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACGATAAAC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
44915 ACATTCTCCTCAATAGGGTAAATGATATTGATGATTTTCTTTTGCACGGAAATGTTTCCTTTGCC
131 ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
* * ** *
44980 TTATTTTCCATAAAATCATAATTTATCCCTTAAATAAGGCAAAAGTTGATTCTCGTAATAGTCTC
196 CTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTC
* ** *
45045 CATTGTTTTCATGATTGGGAACCAAAAATGCATTCCCTTCATTAGGATACATGATATTGATGCTT
261 CATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * *
45110 TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCGTAAATA
326 TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATA
* * * *
45175 AGACAAACA-AGAATAGTCATACTAAACCCCATTTTTTTTCAGGATTAGGCACCGTAAACATAG-
391 AGACAAA-AGTGAATAGTCATACTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGT
*
45238 --TCTCATAAGGATTCACGATAT
454 CTTCTCATAAGGATACACGATAT
* * * *
45259 TGACGCTTTGGGTTCCCAAGAAAGGCTTTCTTTCCACCAATTTTTATAATGTCTAAGTGT-ATGC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGT-TCGTGC
* * *
45323 CTCAAATGTGACAAACAGGGATTATAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
65 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
** * *
45388 CACATTCTCCT-AAGAGGGTAAACGATATTGATGA-TTT-TTTTGCATGAAAATGTTTCCTTTGC
130 CACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGC
* * * * *
45450 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCGTTAATTCTCGCAACAGTCT
195 CCTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCT
* * * * * *
45515 CCATTTTTTTCTTGGTTGGGAACCAAAAACACATTCCCTTCATTAGGATACTTCACATCGATGCT
260 CCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
** *
45580 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGCCTGCCTCTTTAAT
325 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
* * * *
45645 AAGACAAATGTGAATAGTCTTACGAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTC
390 AAGACAAAAGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
45710 TTCTCATAAGGATACACGATAT
455 TTCTCATAAGGATACACGATAT
** * * ** *
45732 TGATACATTGGTTTCGGAAGAAAGGCTTTCTTCGTACCAATTTTTATAATGTCTAATTTCGTGCC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCC
* * * *
45797 TCAAATGAGACAAACATGAATTGTAGTAACGATCTTCATTCATTTTATGATTA-G---TATAAAC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
*
45858 ACATTCTCCTCATTAGGGTAAATGACATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
131 ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
* * *
45923 CTATTTTCCATAAAATCATAGTTCATCCCCTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTC
196 CTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTC
* * * * *
45988 CATTCTTTTCATGATTGCGAACCAAAATCACATTCCTTTCATAAGGATACATTACATTGATGCTT
261 CATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * *
46053 TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTCATC
326 TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATA
* * * *
46118 TGACAAATGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCGCCATAAACATTGTCT
391 AGACAAAAGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
46183 TC-CTATAAGGATACACGATAT
456 TCTC-ATAAGGATACACGATAT
* ** * * *
46204 TGATGCTTTGGTTTCATAAGAAATGCTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGTC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCC
* * * * * * * *
46269 TCAAACGAGACAAACATGGATTCCAGTAAAGATCTTAATTCATTTAGTGATTAGGCTCTAAAAAT
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
46334 GCATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGTAAATGTTTCCTTTGCC
131 ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
* * *
46399 TTATTTTCCATAAAATCATTGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTC
196 CTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTC
* * * * * *
46464 CATTCCTTTCATGGTTTGGAACCAAAAACACATTTCCTTCATTAGGATACATTACATCGATGCTT
261 CATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * *
46529 TGGGGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTCGTCTCTTTAATA
326 TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATA
* * * *
46594 AGACAAACA-TGAATAGTCTTACTAATCACCATTCTTTTCATGATTAGGCACCATAAACATAGTT
391 AGACAAA-AGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
46658 TTCTCATAAGGATACACGATAT
455 TTCTCATAAGGATACACGATAT
* * **
46680 TGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTGAGTTTATGCC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCC
* * * * *
46745 TCAAAAGAGACAAACATGGATTCTAATAAAGATCTTCATTCATTTTATGATTAGGCACGATAAAC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * *
46810 ACATTCTCCTCAATAGGGTAAATGACATGGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
131 ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
* * * * *
46875 TTATTATCCATAAAATCATTGTTTATTATCCCTTAAACAAGGTAAGCGTTGATTCTCGTAACAGT
196 CTATTTTCCATAAAATCATAG--T-TTATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGT
* *
46940 CTCCATTCTTTTCATGGTTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
258 CTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
** * * *
47005 CTTCCGTGTCTCAAGAAAAGCTTTTCTTTCAACCGTTTTCGATAGAATCAATGTTTGTCTCTTTA
323 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTA
* * *
47070 ATAGGACAAATGTGAATAGTCATACTAATCCCCACTCTTTTCAGGATTAGGCACCATAAACATAG
388 ATAAGACAAAAGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * *
47135 TCTTCTTATAATGATACACGATAC
453 TCTTCTCATAAGGATACACGATAT
* ** * *
47159 TGACGCTTTGGTTTCGCAAGAAAGGATTTCTTTTCACCAGTTTTTATAATGTCTAAGTTTGTGCC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCC
* * * * *
47224 TCAAATGAGACAAACAAGGATTGTAGTAA-CATCTTC-TTTATTTTATGATTAGGCACTATAAAC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * *
47287 ACATTCTCCTCATGAGGGTAAATGATGTTGATGATTTTTTTTTGCATGGAAATGTTTCCTTTGCC
131 ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
* * *
47352 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGT-ACTAGTCT
196 CTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAAC-AGTCT
* * * *
47416 CCATTCTTTTCATGATTGGGAACCAAAAACGCATTCCCTTCATAAGGATACTTGACATTGACGCT
260 CCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
47481 TTGGTGTCGCAAGAATAGCTTTTCTTTCAACCATCTTTTTATAGAATCAAAGTTTATCTCGTAAA
325 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGT-TTTTGATAGAATCAAAGTTTGTCTCTTTAA
*
47546 TAAGACAAACA-TGAATAGTCATACTAATCCCCATTCTTTTCAGGATTCGGCACCATAAACATAG
389 TAAGACAAA-AGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * *
47610 TCTTCTCATAAGGATATATGATGT
453 TCTTCTCATAAGGATACACGATAT
* * * * * *
47634 TAACGCTTTAGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATCCC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCC
* * *
47699 TTAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCAATTTGTGATTAGGCACTATAAAC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
*
47764 ACATTCTCCTCATTAGGGTAAATGGTATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
131 ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
* * * * * *
47829 CTATTTTCCATAAAATCATTGTTCATCCCTTAAATAAGGCAAGCGCTAATTCTCGTAATAGTCAC
196 CTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTC
* * *
47894 CATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTCGTTAGGATACATGACATTGATGCTT
261 CATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * *
47959 TAGTGTCGCAAGAAAAGCTTTTCTTTCATCCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATA
326 TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATA
* * * *
48024 AGACAAAAGTGAATAGTCTTACCAATCCCCATTCTTTTCAAGATTAGGCACCATAAACAT--T-G
391 AGACAAAAGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
* *
48086 TCTCATGAGGATTCACGATAT
456 TCTCATAAGGATACACGATAT
* * * *
48107 TGATGCTTTGGGTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATACC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCC
* * * *
48172 CCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCA-TTT-TGATTAGGAACAATAAAC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* **
48235 ACATTCTCCTCAATAGGGTATTTGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
131 ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
* * * *
48300 TTATTTTCCATAAAATTATAGCTTATCCCTTAAATAAGGCAAGAGTTGATTCTCGTAACAGTCTC
196 CTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTC
* *
48365 CATTGTTTTCATGATTGGGAACCAAAAACACATACCCTTTCATTAGGATACATGACATTGATGCT
261 CATTCTTTTCATGATTGGGAACCAAAAACACATTCCC-TTCATTAGGATACATGACATTGATGCT
* * *
48430 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAGGTTTGTCACTTTAAT
325 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
*
48495 AAGACAAACA-TGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
390 AAGACAAA-AGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
48558 CTTCTCATAAGGATACACGATAT
454 CTTCTCATAAGGATACACGATAT
* * * *
48581 TAACACTTTGGTTTCGCAGGAAAGGCTTTCTTCCCACCAATTTTT-TCAATGTCTAAGTTTGTGC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTAT-AATGTCTAAGTTCGTGC
* * ** ** * * *
48645 CTCAAATGAGTCAAGCATGGATTCTAGTAATGATCCCCATTCATTGCGTGACTAGGTATTATAAA
65 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * *
48710 CACATTCTCATTATTAGGGTAAATGATATCGATGATTCTCTTTTGCATTGGAAATGTTTCCTTTA
130 CACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCA-TGGAAATGTTTCCTTTG
* * * * * *
48775 CCCCATTTTCCTTAAATTCATAG---------TGAATAAGGCAAACGTTGATTCTTGTAACAGTC
194 CCCTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTC
* * * *
48831 TCCTTTCATTTC-TAGATTAGGAACCAAAAACACAATT-CCTTCATTAAGATACATGACATTGAT
259 TCCATTCTTTTCAT-GATTGGGAACCAAAAACAC-ATTCCCTTCATTAGGATACATGACATTGAT
* *
48894 GCTTTGGTGTCGTATGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTT
322 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTT
* * *
48959 AATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATA
387 AATAAGACAAAAGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
*
49024 GTTTTCTCATAAGGATACACGATAT
452 GTCTTCTCATAAGGATACACGATAT
* *
49049 TGATGTTTTGGTTTCGCAAGAAAGGCTTT
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTT
49078 TCTTTCAACC
Statistics
Matches: 4201, Mismatches: 509, Indels: 114
0.87 0.11 0.02
Matches are distributed among these distances:
467 107 0.03
468 142 0.03
469 20 0.00
470 138 0.03
471 439 0.10
472 492 0.12
473 651 0.15
474 414 0.10
475 187 0.04
476 918 0.22
477 369 0.09
478 8 0.00
479 316 0.08
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCC
TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
CTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTC
CATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATA
AGACAAAAGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
TCTCATAAGGATACACGATAT
Found at i:46664 original size:948 final size:947
Alignment explanation
Indices: 43842--49077 Score: 7017
Period size: 948 Copynumber: 5.5 Consensus size: 947
43832 TCGTCAATAC
* * ** * *
43842 TGACGCTTTGGTTTTGCAAGAAAGGCTTTTTTTTCACCAATTTTTATAATGTCTAAGTTTGTACC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAA-TTTATGCC
* * * ** *
43907 TCAAATGAGATAAAAAAGGATTCTAGTAATCATCTTCATT-ATTTTGTGATTAGGC---ACACAC
65 TCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCTATAAACAC
* * *
43968 ATTCTCCTCATGAGGGTAAATGATGTTGATGATTTTTTTTTGCATGGAAATGTTTCCTTTGCCCT
130 ATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT
* * *
44033 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAATCGTTGATTC-CTGT-ACTAGTCTC
195 ATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTC-GTAAC-AGTCTC
* * * * *
44096 CATTATTTTCATGATTGGGAACCAAAAACGCATTCCCTACATTAGGATACTTGACATTGACGCTT
258 CATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * * * * * * **
44161 TTGTGTCACAAGAATACCTTTTCATTCAACTGTTTTTTATAGAATCAAAGTTTATCTCTGAAATA
323 TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATA
** *
44226 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTCA-GCACCATAAATATAGTC
388 AGACAAATGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATT-AGGCACCATAAACATAGTC
* * * *
44290 TTCTCATAAGGATACACGATGTTAACACTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTT
452 TTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTT
*
44355 TTATAATGTCTAAGTTCGT-CGCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
516 TTATAATGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTC-
* * *
44419 ATTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGGTAATGATGATTTTCATT
579 ATTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTT
* * *
44484 TGCATGGAAATGTCTCCTTTGCCTTATTTTCCATAAAATCATTGTTTATCCCTTAATTAAGGCAA
644 TGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAA
* * * *
44549 GCGTTGATTCTCGTAACAGTCACCATTCTTTTCATTGTTGGGAACCAAAAACACATTCTCTTCGT
709 GCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACATTCCCTTCAT
* * *
44614 TAGGATACATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAG
774 TAGGATACATTACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAG
** * * *
44679 AATTGAAGTTTGTCTCTTTAATAAGACAAA-AGTGAATAGTCTTGCCAATCCCCATTCTTTTTAG
839 AATCAAAGTTTGTCTCTTTAATAAGACAAACA-TGAATAGTCTTACTAATCCCCATTCTTTTCAG
** *
44743 GATTAGGTGCCATAAACATAG---TCTCATAAGGATTCACGATAT
903 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * *
44785 TGACGCTTTGGGTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTATAATGTCTAAGTTCATGCC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAA-TTTATGCC
*
44850 TCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACGATAAAC
65 TCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGG--CTATAAAC
* *
44915 ACATTCTCCTCAATAGGGTAAATGATATTGATGATTTTCTTTTGCACGGAAATGTTTCCTTTGCC
128 ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
* * * ** *
44980 TTATTTTCCATAAAATCATAATTTATCCCTTAAATAAGGCAAAAGTTGATTCTCGTAATAGTCTC
193 CTATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTC
* ** *
45045 CATTGTTTTCATGATTGGGAACCAAAAATGCATTCCCTTCATTAGGATACATGATATTGATGCTT
258 CATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * *
45110 TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCGTAAATA
323 TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATA
*** * * *
45175 AGACAAACAAGAATAGTCATACTAAACCCCATTTTTTTTCAGGATTAGGCACCGTAAACATAGTC
388 AGACAAATGTGAATAGTCATACTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * *
45240 -TC-ATAAGGATTCACGATATTGACGCTTTGGGTTCCCAAGAAAGGCTTTCTTTCCACCAATTTT
452 TTCTATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTT
* * * * *
45303 TATAATGTCTAAGTGT-ATGCCTCAAATGTGACAAACAGGGATTATAGTAATGATCTTCATTCAT
517 TATAATGTCTAAGT-TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCA-
** *
45367 TTTGTGATTAGGCACTATAAACACATTCTCCT-AAGAGGGTAAACGATATTGATGA-TTT-TTTT
580 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTT
* * * * *
45429 GCATGAAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
645 GCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAG
* * * *
45494 CGTTAATTCTCGCAACAGTCTCCATTTTTTTCTTGGTTGGGAACCAAAAACACATTCCCTTCATT
710 CGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACATTCCCTTCATT
*
45559 AGGATAC-TTCACATCGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAG
775 AGGATACATT-ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAG
** * ** * *
45623 AATCAAAGCCTGCCTCTTTAATAAGACAAATGTGAATAGTCTTACGAATCCCCATTCTTTTTAGG
839 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCTTACTAATCCCCATTCTTTTCAGG
45688 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
904 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
** * * ** *
45732 TGATACATTGGTTTCGGAAGAAAGGCTTTCTTCGTACCAATTTTTATAATGTCTAATTTCGTGCC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAATTT-ATGCC
* * * *
45797 TCAAATGAGACAAACATGAATTGTAGTAACGATCTTCATTCATTTTATGATTA-G-TATAAACAC
65 TCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCTATAAACAC
*
45860 ATTCTCCTCATTAGGGTAAATGACATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT
130 ATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT
* *
45925 ATTTTCCATAAAATCATAGTTCATCCCCTAAATAAGGCAAGCGTTGATTCTCATAACAGTCTCCA
195 ATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCA
* * * * *
45990 TTCTTTTCATGATTGCGAACCAAAATCACATTCCTTTCATAAGGATACATTACATTGATGCTTTG
260 TTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
* * **
46055 GTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTCATCTG
325 GTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAG
* *
46120 ACAAATGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCGCCATAAACATTGTCTTC
390 ACAAATGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT-
* ** * *
46185 CTATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAATGCTTTCTTCCCACCAATTTTTG
454 CTATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTA
* * * *
46250 TAATGTCTAAGTTCGTGTCTCAAACGAGACAAACATGGATTCCAGTAAAGATCTTAATTCATTTA
519 TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTT-
* * **
46315 GTGATTAGGCTCTAAAAATGCATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCA
583 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCA
* * *
46380 TGTAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATTGTTTATCCCTTAAATAAGGCAAGCAT
648 TGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGT
* * *
46445 TGATTCTCGTAACAGTCTCCATTCCTTTCATGGTTTGGAACCAAAAACACATTTCCTTCATTAGG
713 TGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACATTCCCTTCATTAGG
* * *
46510 ATACATTACATCGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATC
778 ATACATTACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATC
* * *
46575 AAAGTTCGTCTCTTTAATAAGACAAACATGAATAGTCTTACTAATCACCATTCTTTTCATGATTA
843 AAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCTTACTAATCCCCATTCTTTTCAGGATTA
*
46640 GGCACCATAAACATAGTTTTCTCATAAGGATACACGATAT
908 GGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* *
46680 TGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTGAGTTTATGCC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCT-AATTTATGCC
* * * *
46745 TCAAAAGAGACAAACATGGATTCTAATAAAGATCTTCATTCATTTTATGATTAGGCACGATAAAC
65 TCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGG--CTATAAAC
* * *
46810 ACATTCTCCTCAATAGGGTAAATGACATGGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
128 ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
* * * * * *
46875 TTATTATCCATAAAATCATTGTTTATTATCCCTTAAACAAGGTAAGCGTTGATTCTCGTAACAGT
193 CTATTTTCCATAAAATCATAG--T-TCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGT
* *
46940 CTCCATTCTTTTCATGGTTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
255 CTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
** * * *
47005 CTTCCGTGTCTCAAGAAAAGCTTTTCTTTCAACCGTTTTCGATAGAATCAATGTTTGTCTCTTTA
320 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTA
* *
47070 ATAGGACAAATGTGAATAGTCATACTAATCCCCACTCTTTTCAGGATTAGGCACCATAAACATAG
385 ATAAGACAAATGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * ** *
47135 TCTTCTTATAATGATACACGATACTGACGCTTTGGTTTCGCAAGAAAGGATTTCTTTTCACCAGT
450 TCTTC-TATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAT
* * * * *
47200 TTTTATAATGTCTAAGTTTGTGCCTCAAATGAGACAAACAAGGATTGTAGT-AACATCTTC-TTT
514 TTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTC
* * * *
47263 ATTTTATGATTAGGCACTATAAACACATTCTCCTCATGAGGGTAAATGATGTTGATGATTTTTTT
579 A-TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTT
* * * *
47328 TTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCA
643 TTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCA
* *
47393 AGCGTTGATTCTCGT-ACTAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACGCATTCCCTTC
708 AGCGTTGATTCTCGTAAC-AGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACATTCCCTTC
* * * * *
47457 ATAAGGATAC-TTGACATTGACGCTTTGGTGTCGCAAGAATAGCTTTTCTTTCAACCATCTTTTT
772 ATTAGGATACATT-ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGT-TTTTG
* * * *
47521 ATAGAATCAAAGTTTATCTCGTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
835 ATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCTTACTAATCCCCATTCTTTT
* * * *
47586 CAGGATTCGGCACCATAAACATAGTCTTCTCATAAGGATATATGATGT
900 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * * *
47634 TAACGCTTTAGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATCCC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAA-TTTATGCC
* * * *
47699 TTAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCAATTTGTGATTAGGCACTATAAAC
65 TCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGG--CTATAAAC
*
47764 ACATTCTCCTCATTAGGGTAAATGGTATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
128 ACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCC
* * * * *
47829 CTATTTTCCATAAAATCATTGTTCATCCCTTAAATAAGGCAAGCGCTAATTCTCGTAATAGTCAC
193 CTATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTC
* * *
47894 CATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTCGTTAGGATACATGACATTGATGCTT
258 CATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * *
47959 TAGTGTCGCAAGAAAAGCTTTTCTTTCATCCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATA
323 TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATA
* * * * *
48024 AGACAAAAGTGAATAGTCTTACCAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATTGTC-
388 AGACAAATGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
* * * *
48088 TC-ATGAGGATTCACGATATTGATGCTTTGGGTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTT
453 TCTATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTT
* * *
48152 ATAATGTCTAAGTTCATACCCCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTT
518 ATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTT
* * * **
48217 -TGATTAGGAACAATAAACACATTCTCCTCAATAGGGTATTTGATATTGATGATTTTCTTTTGCA
583 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCA
* * *
48281 TGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATTATAGCTTATCCCTTAAATAAGGCAAGAGT
648 TGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGT
* * *
48346 TGATTCTCGTAACAGTCTCCATTGTTTTCATGATTGGGAACCAAAAACACATACCCTTTCATTAG
713 TGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACATTCCC-TTCATTAG
* *
48411 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAAT
777 GATACATTACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAAT
* * * *
48476 CAAGGTTTGTCACTTTAATAAGACAAACATGAAGAGTCATACT-ATCCCCATTCTTTTCAGGATT
842 CAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCTTACTAATCCCCATTCTTTTCAGGATT
48540 AGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
907 AGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * *
48581 TAACACTTTGGTTTCGCAGGAAAGGCTTTCTTCCCACCAATTTTT-TCAATGTCTAAGTTTGTGC
1 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTAT-AATGTCTAA-TTTATGC
* * * ** ** * *
48645 CTCAAATGAGTCAAGCATGGATTCTAGTAATGATCCCCATTCATTGCGTGACTAGGTATTATAAA
64 CTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGG--CTATAAA
* * * * *
48710 CACATTCTCATTATTAGGGTAAATGATATCGATGATTCTCTTTTGCATTGGAAATGTTTCCTTTA
127 CACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCA-TGGAAATGTTTCCTTTG
* * * * * *
48775 CCCCATTTTCCTTAAATTCATAG---------TGAATAAGGCAAACGTTGATTCTTGTAACAGTC
191 CCCTATTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTC
* * * *
48831 TCCTTTCATTTC-TAGATTAGGAACCAAAAACACAATT-CCTTCATTAAGATACATGACATTGAT
256 TCCATTCTTTTCAT-GATTGGGAACCAAAAACAC-ATTCCCTTCATTAGGATACATGACATTGAT
* *
48894 GCTTTGGTGTCGTATGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTT
319 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTT
* *
48959 AATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATA
384 AATAAGACAAATGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * *
49024 GTTTTCTCATAAGGATACACGATATTGATGTTTTGGTTTCGCAAGAAAGGCTTT
449 GTCTTCT-ATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTT
49078 TCTTTCAACC
Statistics
Matches: 3783, Mismatches: 456, Indels: 109
0.87 0.10 0.03
Matches are distributed among these distances:
939 200 0.05
940 5 0.00
942 71 0.02
943 362 0.10
944 268 0.07
945 133 0.04
946 44 0.01
947 470 0.12
948 718 0.19
949 336 0.09
950 36 0.01
951 213 0.06
952 92 0.02
953 218 0.06
954 309 0.08
955 308 0.08
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (947 bp):
TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAATTTATGCCT
CAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCTATAAACACA
TTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTA
TTTTCCATAAAATCATAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCAT
TCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
TGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGA
CAAATGTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
ATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATA
ATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTGTG
ATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGG
AAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTTATCCCTTAAATAAGGCAAGCGTTGA
TTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACATTCCCTTCATTAGGATA
CATTACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAA
GTTTGTCTCTTTAATAAGACAAACATGAATAGTCTTACTAATCCCCATTCTTTTCAGGATTAGGC
ACCATAAACATAGTCTTCTCATAAGGATACACGATAT
Found at i:48082 original size:159 final size:159
Alignment explanation
Indices: 44571--49807 Score: 1236
Period size: 159 Copynumber: 33.2 Consensus size: 159
44561 GTAACAGTCA
* * * * * *
44571 CCATTCTTTTCATTG-TTGGGAACCAAAAACACATTCTCTTCGTTAGGATACATGACATTGATGC
1 CCATTCTTTTCA-TGATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGC
* * * **
44635 TTTAGTGTT-GCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATTGAAGTTTGTCTCTTTA
65 TTTGGT-TTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTA
*
44699 ATAAGACAAAAGTGAATAGTCTTGCCAATCC
129 ATAAGACAAAAGTGAATAGTCTTACCAATCC
* * ** * * * * * *
44730 CCATTCTTTTTAGGATTAGGTGCCATAAACATAGT--C-TCATAAGGATTCACGATATTGACGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * * * *
44792 TTGGGTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTT-ATA-ATGTCTAAGTTCATG-C-CTC
66 TTGGTTTCGCAAGAAAGGCTTTTCTTTCAACC-ATTTTTGATAGA-ATCAAAGTT--TGTCTCTT
* * * * *
44852 AAATGAGACAAACA-TGGAT--TCTAGTA-AAGATCT
127 TAATAAGACAAA-AGTGAATAGTCT--TACCA-ATCC
* * * * * *
44885 TCATTCATTTT-GTGATTAGGCACGATAAACACATTCTCC-TCAATAGGGTAAATGATATTGATG
1 CCATTC-TTTTCATGATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATG
* ** * * * * * ** * * *
44948 ATTTTCTTTTGCACGGAAATG-TTTCCTTTGC--CTTATTTTCCATAAAATCATAA-TTTATCCC
64 CTTTGGTTTCGCA-AGAAAGGCTTTTCTTT-CAAC-CATTTTTGATAGAATCA-AAGTTTGTCTC
* * ** * ** * *
45009 TTAAATAAGGCAAAAGTTG-ATTCTCGTAATAGTCT
125 TTTAATAAGACAAAAG-TGAATAGTCTTACCAATCC
* * * * **
45044 CCATTGTTTTCATGATTGGGAACCAAAAATGCATTCCCTTCATTAGGATACATGATATTGATGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * *
45109 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCGTAAAT
66 TTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
* * * *
45174 AAGACAAACA-AGAATAGTCATACTAAACC
131 AAGACAAA-AGTGAATAGTCTTACCAATCC
* * * * * * * * *
45203 CCATTTTTTTTCAGGATTAGGCACCGTAAACATAGT--C-TCATAAGGATTCACGATATTGACGC
1 CCA-TTCTTTTCATGATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGC
* * * * *
45265 TTTGGGTTCCCAAGAAAGGC-TTTCTTTCCACCAATTTTT-ATA-ATGTCTAAGTGTATG-C-CT
65 TTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACC-ATTTTTGATAGA-ATCAAAGT-T-TGTCTCT
** ** * * ** *** *
45325 CAAATGTGACAAACAGGGATTA-TAGTAATGATCT
126 TTAATAAGACAAA-AGTGAATAGTCTTACCAATCC
* * * ** * * *
45359 TCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCC-T-AAGAGGGTAAACGATATTGATG
1 CCATTC-TTTTCATGATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATG
* * * * * *** * ** *
45421 ATTT--TTTTGCATGAAAATG-TTTCCTTTGC--CCTATTTTCCTTAAAATCAAAGTTCATCCCT
64 CTTTGGTTTCGCAAG-AAAGGCTTTTCTTT-CAACC-ATTTTTGATAGAATCAAAGTTTGTCTCT
* * ** * ** ** * * *
45481 TAAATAAGGCAAGCGTTAATTCTCGCAACAGTCT
126 TTAATAAGACAAAAGTGAATAGTCTTACCAATCC
* * * * * * * * * *
45515 CCATTTTTTTCTTGGTTGGGAACCAAAAACACATTCCCTTCATTAGGATACTTCACATCGATGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * ** *
45580 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGCCTGCCTCTTTAAT
66 TTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
* *
45645 AAGACAAATGTGAATAGTCTTACGAATCC
131 AAGACAAAAGTGAATAGTCTTACCAATCC
* * * * * * * *
45674 CCATTCTTTTTAGGATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACACGATATTGATAC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGC
* * * * *
45738 ATTGGTTTCGGAAGAAAGGC-TTTC-TTCGTACCAATTTTT-ATA-ATGTCTAA-TTTCGTGC-C
65 TTTGGTTTCGCAAGAAAGGCTTTTCTTTC-AACC-ATTTTTGATAGA-ATCAAAGTTT-GT-CTC
** * * ** * * *
45797 TCAAATGAGACAAACA-TGAATTGTAGTAACGATCT
125 TTTAATAAGACAAA-AGTGAATAGTCTTACCAATCC
* * * * *
45832 TCATTCATTTT-ATGATTA-G---TATAAACACATTCTCC-TCATTAGGGTAAATGACATTGATG
1 CCATTC-TTTTCATGATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATG
* ** * * * * ** * * ** * *
45891 ATTTTCTTTTGCATGGAAATG-TTTCCTTTGC--CCTATTTTCCATAAAATCATAGTTCATCCCC
64 CTTTGGTTTCGCA-AGAAAGGCTTTTCTTT-CAACC-ATTTTTGATAGAATCAAAGTTTGTCTCT
* * ** ** * * * *
45953 TAAATAAGGCAAGCGTTG-ATTCTCATAACAGTCT
126 TTAATAAGACAAAAG-TGAATAGTCTTACCAATCC
* * * * *
45987 CCATTCTTTTCATGATT-GCGAACCA-AAATCACATTCCTTTCATAAGGATACATTACATTGATG
1 CCATTCTTTTCATGATTAG-GCACCATAAA-CACATTCCCTTCATTAGGATACATGATATTGATG
* * * * *
46050 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTTC
64 CTTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTA
** * * *
46115 ATCTGACAAATGTGAATAGTCATACTAATCC
129 ATAAGACAAAAGTGAATAGTCTTACCAATCC
* * ** * *
46146 CCATTCTTTTCAGGATTAGGCGCCAT-AA-ACATTGTCTTCCTATAAGGATACACGATATTGATG
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCTT-C-ATTAGGATACATGATATTGATG
** * * * * * * * *
46209 CTTTGGTTTCATAAGAAATGC-TTTCTTCCCACCAATTTTTG-TA-ATGTCTAAGTTCGTGTCTC
64 CTTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACC-ATTTTTGATAGA-ATCAAAGTTTGTCTCTT
* ** * * * *
46271 AAACGAGACAAACA-TGGAT--TCCAGTA-AAGATCT
127 TAATAAGACAAA-AGTGAATAGT-C-TTACCA-ATCC
** * * * * ** * *
46304 TAATTCATTT-AGTGATTAGGCTCTAAAAATGCATTCTCC-TCATTAGGGTAAATGATATTGATG
1 CCATTCTTTTCA-TGATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATG
* ** * * * * * ** * ** * *
46367 ATTTTCTTTTGCATGTAAATG-TTTCCTTTGC--CTTATTTTCCATAAAATCATTGTTTATCCCT
64 CTTTGGTTTCGCAAG-AAAGGCTTTTCTTT-CAAC-CATTTTTGATAGAATCAAAGTTTGTCTCT
* * * * ** * * * *
46429 TAAATAAGGCAAGCATTG-ATTCTCGTAACAGTCT
126 TTAATAAGACAA-AAGTGAATAGTCTTACCAATCC
* * * * * * * * *
46463 CCATTCCTTTCATGGTTTGGAACCAAAAACACATTTCCTTCATTAGGATACATTACATCGATGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
** * ** *
46528 TTGGGGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTCGTCTCTTTAAT
66 TTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
* *
46593 AAGACAAACA-TGAATAGTCTTACTAATCA
131 AAGACAAA-AGTGAATAGTCTTACCAATCC
* ** * * *
46622 CCATTCTTTTCATGATTAGGCACCATAAACATAGTTTTC-TCATAAGGATACACGATATTGACGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACA-TTCCCTTCATTAGGATACATGATATTGATGC
* * * * ** *
46686 TTTGGTTTCACAAGAAAGGC-TTTCTTCCCACCAATTTTT-ATA-ATGTCTGAGTTTATGC-C-T
65 TTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACC-ATTTTTGATAGA-ATCAAAGTTTGT-CTCTT
* * * * *
46746 CAAAAGAGACAAACA-TGGAT--TCTAATA-AAGATCT
127 TAATA-AGACAAA-AGTGAATAGTCT--TACCA-ATCC
* * * * * * *
46780 TCATTCATTTT-ATGATTAGGCACGATAAACACATTCTCC-TCAATAGGGTAAATGACATGGATG
1 CCATTC-TTTTCATGATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATG
* ** * * * * * * * ** *
46843 ATTTTCTTTTGCATGGAAATG-TTTCCTTT--GCC-TTATTATCCATAAAATCATTGTTTATTAT
64 CTTTGGTTTCGCA-AGAAAGGCTTTTCTTTCAACCATT-TT-T-GATAGAATCAAAG--T-TTGT
* * * ** ** ** * * * *
46904 CCCTTAAACAAGGTAAGCGTTG-ATTCTCGTAACAGTCT
122 CTCTTTAATAAGACAAAAG-TGAATAGTCTTACCAATCC
* * * * *
46942 CCATTCTTTTCATGGTTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
** * * * * * *
47007 TCCGTGTCTCAAGAAAAGCTTTTCTTTCAACCGTTTTCGATAGAATCAATGTTTGTCTCTTTAAT
66 TTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
* * * *
47072 AGGACAAATGTGAATAGTCATACTAATCC
131 AAGACAAAAGTGAATAGTCTTACCAATCC
* * * * * * * * * *
47101 CCACTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTT-ATAATGATACACGATACTGACGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
* * *
47165 TTTGGTTTCGCAAGAAAGG-ATTTCTTTTC-ACCAGTTTTT-ATA-ATGTCTAAGTTTGTGC-CT
65 TTTGGTTTCGCAAGAAAGGCTTTTC-TTTCAACCA-TTTTTGATAGA-ATCAAAGTTTGT-CTCT
** * * ** * *
47225 CAAATGAGACAAACAAG-G-ATTGTAGTAAC-ATCT
126 TTAATAAGAC-AA-AAGTGAATAGTCTTACCAATCC
* * * * * * * * *
47258 TCTTTATTTT-ATGATTAGGCACTATAAACACATTCTCC-TCATGAGGGTAAATGATGTTGATGA
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
** * * * * *** * ** *
47321 TTTTTTTTTGCATGGAAATG-TTTCCTTTGC--CCTATTTTCCTTAAAATCAAAGTTCATCCCTT
65 TTTGGTTTCGCA-AGAAAGGCTTTTCTTT-CAACC-ATTTTTGATAGAATCAAAGTTTGTCTCTT
* * ** ** * * * *
47383 AAATAAGGCAAGCGTTG-ATTCTCGTACTAGTCT
127 TAATAAGACAAAAG-TGAATAGTCTTACCAATCC
* * * * * * * *
47416 CCATTCTTTTCATGATTGGGAACCAAAAACGCATTCCCTTCATAAGGATACTTGACATTGACGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * * *
47481 TTGGTGTCGCAAGAATA-GCTTTTCTTTCAACCATCTTTTTATAGAATCAAAGTTTATCTCGTAA
66 TTGGTTTCGCAAGAA-AGGCTTTTCTTTCAACCAT-TTTTGATAGAATCAAAGTTTGTCTCTTTA
* *
47545 ATAAGACAAACA-TGAATAGTCATACTAATCC
129 ATAAGACAAA-AGTGAATAGTCTTACCAATCC
* * * * * * * * * *
47576 CCATTCTTTTCAGGATTCGGCACCATAAACATAGT-CTTCTCATAAGGATATATGATGTTAACGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGC
* * * * * * * ** * *
47640 TTTAGTTTCGTAAGAAACGC-TTTCTTCCCACCAATTTTT-ATA-ATGTCTAAGTTCATCCCTTA
65 TTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACC-ATTTTTGATAGA-ATCAAAGTTTGTCTCTTT
* * *** *
47702 AATGAGACAAACA-TGGAT--TCTAGTAATGATCT
128 AATAAGACAAA-AGTGAATAGTCT--TACCAATCC
** * * * * * *
47734 TTATTCAATTT-GTGATTAGGCACTATAAACACATTCTCC-TCATTAGGGTAAATGGTATTGATG
1 CCATTC-TTTTCATGATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATG
* ** * * * * ** * ** ** *
47797 ATTTTCTTTTGCATGGAAATG-TTTCCTTTGC--CCTATTTTCCATAAAATCATTGTTCATCCCT
64 CTTTGGTTTCGCA-AGAAAGGCTTTTCTTT-CAACC-ATTTTTGATAGAATCAAAGTTTGTCTCT
* * ** ** * ** * *
47859 TAAATAAGGCAAGCGCT-AATTCTCGTAATAGTCA
126 TTAATAAGACAAAAG-TGAATAGTCTTACCAATCC
* * * * * * *
47893 CCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTCGTTAGGATACATGACATTGATGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * *
47958 TTAGTGTCGCAAGAAAAGCTTTTCTTTCATCCATTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
66 TTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
48023 AAGACAAAAGTGAATAGTCTTACCAATCC
131 AAGACAAAAGTGAATAGTCTTACCAATCC
* ** * * *
48052 CCATTCTTTTCAAGATTAGGCACCAT-AA-ACATTGTC-TCATGAGGATTCACGATATTGATGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * * * ** ***
48114 TTGGGTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTT-ATA-ATGTCTAAGTTCATAC-CCCA
66 TTGGTTTCGCAAGAAAGGCTTTTCTTTCAACC-ATTTTTGATAGA-ATCAAAGTTTGT-CTCTTT
* * * *
48175 AATGAGACAAACA-TGGAT--TCTAGTA-AAGATCT
128 AATAAGACAAA-AGTGAATAGTCT--TACCA-ATCC
* * * * * * ** *
48207 TCATTCATTT--TGATTAGGAACAATAAACACATTCTCC-TCAATAGGGTATTTGATATTGATGA
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
** * * * * * ** * * * * * *
48269 TTTTCTTTTGCATGGAAATG-TTTCCTTTGC--CTTATTTTCCATAAAATTATAGCTTATCCCTT
65 TTTGGTTTCGCA-AGAAAGGCTTTTCTTT-CAAC-CATTTTTGATAGAATCAAAGTTTGTCTCTT
* * * ** * * * *
48331 AAATAAGGCAAGAGTTG-ATTCTCGTAACAGTCT
127 TAATAAGACAAAAG-TGAATAGTCTTACCAATCC
* * * * * *
48364 CCATTGTTTTCATGATTGGGAACCAAAAACACATACCCTTTCATTAGGATACATGACATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCC-TTCATTAGGATACATGATATTGATGC
* * * *
48429 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAGGTTTGTCACTTTAA
65 TTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAA
* * *
48494 TAAGACAAACA-TGAAGAGTCATA-CTATCC
130 TAAGACAAA-AGTGAATAGTCTTACCAATCC
* * * * * * * **
48523 CCATTCTTTTCAGGATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACACGATATTAACAC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGC
* * * * *
48587 TTTGGTTTCGCAGGAAAGGC-TTTCTTCCCACCAATTTTT--TCA-ATGTCTAAGTTTGTGC-CT
65 TTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACC-ATTTTTGAT-AGA-ATCAAAGTTTGT-CTCT
** * * * * ***
48647 CAAATGAGTCAAGCA-TGGAT--TCTAGTAATGATCC
126 TTAATAAGACAA-AAGTGAATAGTCT--TACCAATCC
* * * * * ** * * * * *
48681 CCATTCATTGCGTGACTAGGTATTATAAACACATTCTCATT-ATTAGGGTAAATGATATCGATGA
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
* * * * * * *** *
48745 TTCT-CTTTTGCATTGGAAATG-TTTCCTTT-ACCCCATTTTCCTTA-AATTCATAG--TG----
65 TT-TGGTTTCGCA--AGAAAGGCTTTTCTTTCA-ACCATTTTTGATAGAA-TCAAAGTTTGTCTC
* * * * *
48800 ---AATAAGGCAAACGTTG-AT--TCTTGTAACAGTCT
125 TTTAATAAGACAAAAG-TGAATAGTC-T-TACCAATCC
* * * * * *
48832 CCTTTCATTTC-TAGATTAGGAACCAAAAACACAATT-CCTTCATTAAGATACATGACATTGATG
1 CCATTCTTTTCAT-GATTAGGCACCATAAACAC-ATTCCCTTCATTAGGATACATGATATTGATG
* * * * *
48895 CTTTGGTGTCGTATGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTA
64 CTTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTA
* *
48960 ATAAGACAAATGTGAATAGTCTTACTAATCC
129 ATAAGACAAAAGTGAATAGTCTTACCAATCC
* ** * * *
48991 CCATTCTTTTCATGATTAGGCACCATAAACATAGTTTTC-TCATAAGGATACACGATATTGATGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACA-TTCCCTTCATTAGGATACATGATATTGATGC
*
49055 TTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAA
65 TTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAA
* *
49120 TAAGACAAATGTGAATAGTCTTACTAATCC
130 TAAGACAAAAGTGAATAGTCTTACCAATCC
* * * ** * * *
49150 CCATTCTTTTCATGATTAGGCACCGTAAATATAGTTTTC-TCATAAGGATACACGATATTGATGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACA-TTCCCTTCATTAGGATACATGATATTGATGC
* * *
49214 TTTGGTTTTGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTTAA
65 TTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAA
* *
49279 TAAGACAAATGTGAATAGTCTTACTAATCC
130 TAAGACAAAAGTGAATAGTCTTACCAATCC
* * * * * * * * *
49309 CCATTCTTTTTAGGATTAGGCACCGTAAACATAGT-CTTCTCATAAGGATACACGATATTGACGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGC
* * * * * * **
49373 TTT-G----GCAAAAAAGGC-TTTCTTCCTACCAATTTTT-ATA-ATGTCTAAGTTTGTGTCTCA
65 TTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACC-ATTTTTGATAGA-ATCAAAGTTTGTCTCTTT
* * * *
49430 AATGAGACAAACA-TGGAT--TCTAATA-AAGATCT
128 AATAAGACAAA-AGTGAATAGTCT--TACCA-ATCC
* * * * * * *
49462 TCATTCATTTT-GTGATTTGGCACTATAAACGCATTCTCC-TCATTAGGGTAAATGATATTGATG
1 CCATTC-TTTTCATGATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATG
* ** * * ** * ** ** *
49525 ATTTTCTTTTGCATTA-AAATG-TTTTCTTTGC--CC-TGTTTCCATAAAATCATTGTTCATCCC
64 CTTTGGTTTCGCA--AGAAAGGCTTTTCTTT-CAACCAT-TTTTGATAGAATCAAAGTTTGTCTC
* * * ** * ** *
49585 TTAAATAAGGCAAACGTTG-ATTCTCGTAATAATCT
125 TTTAATAAGACAAAAG-TGAATAGTCTTACCAATCC
* * ** * * * *
49620 CCATTCTTTT-ATCGGTTCA-GAATGA-AAAGCACATTCCCTTGAATAGGATACACGACATTGAT
1 CCATTCTTTTCAT-GATT-AGGCACCATAAA-CACATTCCCTTCATTAGGATACATGATATTGAT
* * *
49682 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTT
63 GCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTT
* **
49747 AATAAGACAAATGTGAATAGTCTTATTAATCC
128 AATAAGACAAAAGTGAATAGTCTTACCAATCC
*
49779 CCATTCTTTTTATGATTAGGCACCATAAA
1 CCATTCTTTTCATGATTAGGCACCATAAA
49808 ATAGTTTTCT
Statistics
Matches: 3632, Mismatches: 1120, Indels: 651
0.67 0.21 0.12
Matches are distributed among these distances:
149 5 0.00
150 25 0.01
151 70 0.02
152 10 0.00
153 104 0.03
154 71 0.02
155 210 0.06
156 309 0.09
157 271 0.07
158 669 0.18
159 1489 0.41
160 276 0.08
161 24 0.01
162 84 0.02
163 7 0.00
164 6 0.00
165 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (159 bp):
CCATTCTTTTCATGATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
TTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
AAGACAAAAGTGAATAGTCTTACCAATCC
Found at i:49787 original size:629 final size:618
Alignment explanation
Indices: 47937--49827 Score: 1757
Period size: 629 Copynumber: 3.0 Consensus size: 618
47927 TCCCTTCGTT
* * * * * *
47937 AGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCATCCATTTTTGATAGA
1 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGA
* * *
48002 ATCAAAGTTTGTCTCTTTAATAAGACAAAAGTGAATAGTCTTACCAATCCCCATTCTTTTCAAGA
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTCAGGA
* * * *
48067 TTAGGCACCATAAACAT-TGTCTCATGAGGATTCACGATATTGATGCTTTGGGTTCGCAAGAAAG
131 TTAGGCACCATAAACATATCTCTCATAAGGATACACGATATTGACGCTTT--G---GCAAGAAAG
* *
48131 GCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCA-TACCCCAAATGAGACAAACATGGATTC
191 GCTTTCTTCCTACCAATTTTTATAATGTCTAAGTT-AGT--GCCAAATGAGACAAACATGGATTC
* **
48195 TAGTAAAGATCTTCATTCA-TTTTGATTAGGAACAATAAACACATTCTCCTCAATAGGGTATTTG
253 TAGTAAAGATCTTCATTCATTTTTGATTAGGAACAATAAACACATTCTCCTCATTAGGGTAAATG
* * * * *
48259 ATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATTATAGCTT
318 ATATTGATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCCT-GTTTCCATAAAATCATAG-TT
* * * *
48324 ATCCCTTAAATAAGGCAAGAGTTGATTCTCGTAACAGTCTCCATTGTTTTCATGATTGGGAACCA
381 ATCCCTTAAATAAGGCAA-AGTTGATTCTCGTAATAATCTCCATTCTTTTCATGATT-AGAACC-
* * *
48389 AAAACACATACCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
443 AAAACACATTCCC-TT-AATAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * * ** * *
48454 TTTCAACCATTTTTGATAGAATCAAGGTTTGTCACTTTAATAAGACAAACATGAAGAGTCATACT
506 TTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACT
* *
48519 -ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
571 AATCCCCATTCTTTTCATGATTAGGCACCATAAA-ATAGTTTTCTCATA
* ** * * *
48567 AGGATACACGATATTAACACTTTGGTTTCGCAGGAAAGGC-TTTCTTCCCACCAATTTTT--TCA
1 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACC-ATTTTTGAT-A
* * ** * * * * *
48629 -ATGTCTAAGTTTGTGC-CTCAAATGAGTCAAGCATG-G-AT--TCTAGTAATGATCCCCATTCA
64 GA-ATCAAAGTTTGT-CTCTTTAATAAGACAA--ATGTGAATAGTCT--TACTAATCCCCATTCT
* * * ** * * * * *
48688 TTGC-GTGACTAGGTATTATAAACACAT-TCTCATTATTAGGGTAAATGATATCGATGATTCTCT
123 TTTCAG-GATTAGGCACCATAAACATATCTCTCA-TA--AGGATACACGATAT---TGA--CGCT
* * * * *
48751 TTTGCATTGGAAATG-TTTCCTT--TACCCCATTTTCCT-TAAAT-TC--A--TAGTG---AATA
179 TTGGCA--AGAAAGGCTTT-CTTCCTA-CCAATTTT--TAT-AATGTCTAAGTTAGTGCCAAATG
* * * * * * *
48804 AGGCAAACGTTGATTCTTGTAACAG-TCTCCTTTCATTTCTAGATTAGGAACCAA-AAACACAAT
237 AGACAAACATGGATTCTAGTAA-AGATCTTCATTCATTT-TTGATTAGGAA-CAATAAACAC-AT
* * * * * * ** * * *
48867 TC-CTTCATTAAGATACATGACATTGATGCTTTGGTGTCGTATGAAAA-GCTTTTCTTT-CAACC
298 TCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAAATG-TTTTCTTTGC--CC
** * * * * * * ** * * *
48929 -GTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAA-TGTGAATAGTCTTACTAATCCC
360 TG-TTTCCATAAAATCATAG-TTATCCCTTAAATAAGGCAAAGT-TG-ATTCTCGTAATAATCTC
* * ** * * *
48992 CATTCTTTTCATGATTAGGCACCATAAACATAGTTTTC-TCATAAGGATACACGATATTGATGTT
421 CATTCTTTTCATGATTA-GAACCA-AAACACA-TTCCCTTAAT-AGGATACACGACATTGATGCT
* *
49056 TTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
482 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAAT
*
49121 AAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTCATGATTAGGCACCGTAAATATAGTT
547 AAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTCATGATTAGGCACCATAAA-ATAGTT
49186 TTCTCATA
611 TTCTCATA
* * *
49194 AGGATACACGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGATAGA
1 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGA
* *
49259 ATCAAAGTTTATCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGGA
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTCAGGA
* *
49324 TTAGGCACCGTAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGCAAAAAAGGCT
131 TTAGGCACCATAAACATA-TC-TCTCATAAGGATACACGATATTGACGCTTTGGCAAGAAAGGCT
* *
49389 TTCTTCCTACCAATTTTTATAATGTCTAAGTTTGTGTCTCAAATGAGACAAACATGGATTCTAAT
194 TTCTTCCTACCAATTTTTATAATGTCTAAGTTAGTG-C-CAAATGAGACAAACATGGATTCTAGT
* * * *
49454 AAAGATCTTCATTCATTTTGTGATTTGGCACTATAAACGCATTCTCCTCATTAGGGTAAATGATA
257 AAAGATCTTCATTCATTTT-TGATTAGGAACAATAAACACATTCTCCTCATTAGGGTAAATGATA
* *
49519 TTGATGATTTTCTTTTGCATTAAAATGTTTTCTTTGCCCTGTTTCCATAAAATCATTGTTCATCC
321 TTGATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCCTGTTTCCATAAAATCATAGTT-ATCC
* **
49584 CTTAAATAAGGCAAACGTTGATTCTCGTAATAATCTCCATTCTTTT-ATCGGTTCAGAATGAAAA
385 CTTAAATAAGGCAAA-GTTGATTCTCGTAATAATCTCCATTCTTTTCAT-GATT-AGAACCAAAA
49648 GCACATTCCCTTGAATAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
447 -CACATTCCCTT-AATAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
*
49713 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTATTAATC
510 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATC
*
49778 CCCATTCTTTTTATGATTAGGCACCATAAAATAGTTTTCTCATA
575 CCCATTCTTTTCATGATTAGGCACCATAAAATAGTTTTCTCATA
49822 AGGATA
1 AGGATA
49828 GATGACATTT
Statistics
Matches: 976, Mismatches: 201, Indels: 170
0.72 0.15 0.13
Matches are distributed among these distances:
620 4 0.00
621 10 0.01
622 10 0.01
623 11 0.01
625 38 0.04
626 112 0.11
627 205 0.21
628 114 0.12
629 277 0.28
630 138 0.14
631 10 0.01
632 15 0.02
633 10 0.01
634 11 0.01
635 7 0.01
637 4 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (618 bp):
AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCAACCATTTTTGATAGA
ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTCAGGA
TTAGGCACCATAAACATATCTCTCATAAGGATACACGATATTGACGCTTTGGCAAGAAAGGCTTT
CTTCCTACCAATTTTTATAATGTCTAAGTTAGTGCCAAATGAGACAAACATGGATTCTAGTAAAG
ATCTTCATTCATTTTTGATTAGGAACAATAAACACATTCTCCTCATTAGGGTAAATGATATTGAT
GATTTTCTTTTGCATGAAAATGTTTTCTTTGCCCTGTTTCCATAAAATCATAGTTATCCCTTAAA
TAAGGCAAAGTTGATTCTCGTAATAATCTCCATTCTTTTCATGATTAGAACCAAAACACATTCCC
TTAATAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTG
ATAGAATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTT
CATGATTAGGCACCATAAAATAGTTTTCTCATA
Found at i:50132 original size:474 final size:469
Alignment explanation
Indices: 49194--56332 Score: 6645
Period size: 476 Copynumber: 15.2 Consensus size: 469
49184 TTTTCTCATA
* * * * *
49194 AGGATACACGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGATAGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
*
49259 ATCAAAGTTTATCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGGA
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGGA
* * *
49324 TTAGGCACCGTAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGCAAAAAAGGCT
131 TTAGGCACCATAAACATAGT-TTCTCATAAGGATACACGACATTGACACTTTGGCAAAAAAGGCT
* * ** **
49389 TTCTTCCTACCAATTTTTATAATGTCTAAGTTTGTGTCTCAAATGAGACAAACATGGATTCTAAT
195 TTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGATTCTAAT
* * *
49454 AAAGATCTTCATTCATTTTGTGATTTGGCACTATAAACGCATTCTCCTCATTAGGGTAAATGATA
260 AAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATA
* * * *
49519 TTGATGATTTTCTTTTGCATTAAAATGTTTTCTTTGCCCTGTTTCCATAAAATCATTGTTCATCC
325 TTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCTGTTTCCATAAAATAATTGTTCATAC
* * * * **
49584 CTTAAATAAGGCAAACGTTGATTCTCGTAATAATCTCCATTCTTTTATCGGTTCAGAATGAAAAG
390 CTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTCTTTCATCGATTCAGAACCAAAAG
* *
49649 CACATTCCCTTGAAT
455 CAAATTCCCTTCAAT
49664 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
* *
49729 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTATTAATCCCCATTCTTTTTATGA
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGGA
* * * * *
49794 TTAGGCACCATAAA-ATAGTTTTCTCATAAGGATAGATGACATTTACACTTTGGTTTCGCACAAG
131 TTAGGCACCATAAACATAG-TTTCTCATAAGGATACACGACATTGACACTTT-G----GCAAAAA
*
49858 AGGCTTTCTTCCCACCAAATTTTATAATGTCTAGGTTCCTACCTCAAATGAGACAAACATGGATT
190 AGGCTTTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGATT
*
49923 CTAGTAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAA
255 CTAATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAA
* * * * *
49988 TGGTATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATGAAATAATTTT
320 TGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCT-GTTTCCATAAAATAATTGT
* * * **
50053 TCATACCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTCAT-GATTGGGAAC
384 TCATACCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTCTTTCATCGATTCAGAAC
*
50117 CAGAAA-TAAATTCCCTTCAAT
449 CA-AAAGCAAATTCCCTTCAAT
* * * * *
50138 AGGATACATGACATTGATGCTTTGATGTCGCAAGAAAACCTTTTCTTTCAACCGTTTCTAATAGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
* * * * *
50203 ATTAATGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCATACTAATCCCTATTCTTTTCAGGA
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGGA
50268 TTAGGCACCATAAACATAG--TCTCATAA-G------G--ATT--CA------C-------G---
131 TTAGGCACCATAAACATAGTTTCTCATAAGGATACACGACATTGACACTTTGGCAAAAAAGGCTT
* ** * ** *
50304 T-TT-CCACCAATTTTTATAATGTCTAAGTTTATGCCTCAAATGAGACAAACAAAGATTCTAGT-
196 TCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGATTCTAATA
** *
50366 -TCATCTTCATT-ATTTTTTGATTAGGCACTATAAACACATTCT-C-C--T-GGGTAAATG--A-
261 AAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATAT
* * * * *
50421 TGATAATTTT-TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATTAA-AGTTCATC
326 TGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCT-GTTTCCATAAAA-TAATTGTTCATA
* * * * * **
50484 CCTTAGATAAGGCAAGCGTTGATTCTCGTACCAGTCTCCATTCTTTTCAT-GATTGGGAACCAAA
389 CCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTC-TTTCATCGATTCAGAACC-AA
** *
50548 AATGC--ATTCTTTTCATT
452 AA-GCAAATTCCCTTCAAT
** * * * * *
50565 AGGATACTTGACATTGACGTTTTGGTGTCGCAAGAATAGCTTTTCTTTCAATCGTTTTTTATAGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
* * ** * * * *
50630 ATCAAAGTTTGTCTGTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTCTTCTCAGGA
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGGA
* * * * * **
50695 TTCGACACCATAAACATAGCCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGTACGAA
131 TTAGGCACCATAAACATAG-TTTCTCATAAGGATACACGACATTGACACTTTGG---C--AAAAA
* * * * * * * *
50760 CGGCTTTCTTCTCTCCAATTTTTATAATGTCTATGTTCGTGCCTCAAATGAGACAAACATAGATT
190 AGGCTTTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGATT
* * * * * *
50825 ATAGTAATGATATTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGGTAAA
255 CTAATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAA
* * * * * * * *
50890 GGATATTGATGATTTTCTTTTGC-TTAGAATCGTTTCATTTGCCATTTTTTCCTTAAAATCAA-A
320 TGATATTGATGATTTTCTTTTGCATGAAAAT-GTTTCCTTTGCC-CTGTTTCCATAAAAT-AATT
* * * * * * *
50953 GTTCATCCCTTAAATAAGGCAAGCAATCATTCTCGAAACAATCCCCATTCTTTTCAT-GATT-TG
382 GTTCATACCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTC-TTTCATCGATTCAG
* **
51016 CAACCAAGAA-CACATTCCCTTCTTT
446 -AACCAA-AAGCAAATTCCCTTCAAT
* ** * * *
51041 GGGATACTTGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCATTTTTTATAGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
* * ** * *
51106 ATCAAAGCTTGTCTCTTTAATAAGGCAAACATGAATAGTCATACTAATCCCCATTC-TTTTCGTG
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAG-G
* * ** *
51170 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATACTGATGCTTTGGTTTCGCAAGA
130 ATTAGGCACCATAAACATAGT-TTCTCATAAGGATACACGACATTGACACTTT-G----GCAAAA
** * *** *
51235 AAGGCTTTCTTCCCATGAATTTTTATAATGTCTAAGTTCGGGCCTCAAATGAGATAAACATGGAT
189 AAGGCTTTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGAT
* *
51300 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
254 TCTAATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * * *
51365 ATGGTATTTATGATTTTCTTTTGCAT-AGAAATGTTTCCTTTGCCCTATTTTTCATAAAATAATT
319 ATGATATTGATGATTTTCTTTTGCATGA-AAATGTTTCCTTTGCCCT-GTTTCCATAAAATAATT
* * * * * **
51429 TTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCA-GGATTGGG
382 GTTCATACCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTC-TTTCATCGATTCAG
* ** *
51493 AACCAAAAACGCATTCCCTTCATT
446 AACCAAAAGCAAATTCCCTTCAAT
* * * *
51517 AGGATACATGACAGTGATGCTTTGGTATCGCAATAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
* * * * *
51582 A-AAAAATTTGTCTCCTGAATAAGACAAATGTGAATAGT-TATACTAATCCCCATTCTTTTCAGG
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCT-TACTAATCCCCATTCTTTTTAGG
* * * * * * * *
51645 ATTAGGCACCATAAACATTGTCCTCTTAGAAGGATACACGATATTGACGCTTTGGTTTCGTAGAA
130 ATTAGGCACCATAAACATAGT-TTCTCATAAGGATACACGACATTGACACTTTGG---C-AAAAA
* * **
51710 ACGCTTTCTTCCCACC-AATTTTATAATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATT
190 AGGCTTTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGATT
* * *
51774 CTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGGTAAA
255 CTAATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAA
* * * * * * *
51839 TAATATTGATGATTTTC---TGCATGGAAATGTTTCCATTGCCTTATTTTCATAAAATCATTGTT
320 TGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCTGTTTCCATAAAATAATTGTT
* * * * * * **
51901 CATCCCTTAAATAAGGCAAGCGTTGATTCTCATAACAATTTCCATTCTTTTCAT-GGTTGGGAAC
385 CATACCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTC-TTTCATCGATTCAGAAC
* * **
51965 CAAAAACACATTCCCTTCTTT
449 CAAAAGCAAATTCCCTTCAAT
* * * * *
51986 AGGATACATGACATTTATGCTTTGGTGTTGAAAGAAAAGCTATTCTTTCAACCGTTTTTGATAGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
* * * *
52051 ATCAAAGTTTGTCTCATTAACAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTCATGA
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGGA
* * * * * **
52116 TTAGGCACCATAAACGTAGTTTTCTCATAAGGATACACGATATTTATGCTTCGGTTTTG-AACGA
131 TTAGGCACCATAAACATAG-TTTCTCATAAGGATACACGACATTGA--C-AC--TTTGGCAAAAA
* * * * *
52180 AGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGTGTCAAACATGGATT
190 AGGCTTTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGATT
* * * * *
52245 CTAGA-AAAGATCTTTATTCATTTTGTGATAAGGCACTATAAACATATTCTCCTCCTTAGGGTAA
255 CTA-ATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * * * * *
52309 ATGGTATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATTA
319 ATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCT-GTTTCCATAAAATAATTG
* * * ** * * **
52374 TTAATGCCTTAAATAAGGCAAACGTTGATTCTCGTAACAGCCTCCAATCTTTTCAT-GGTTGGGA
383 TTCATACCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTC-TTTCATCGATTCAGA
* * *
52438 ACCAAAAACACATTCCCTTCATT
447 ACCAAAAGCAAATTCCCTTCAAT
* *
52461 AGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
*
52526 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCATACTAATCCCCATTCTTTTTAGGA
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGGA
* * * * * *
52591 TTAGGCACCATAAACATTGTATTCTCAGAAGGATGCACGATATTGACGCTTTGGTTTCGTAAGAA
131 TTAGGCACCATAAACATAGT-TTCTCATAAGGATACACGACATTGACACTTTGG---C--AAAAA
* * * ** * *
52656 ATGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGTCTTAAATGGGACAAACATGGATT
190 AGGCTTTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGATT
* * * **
52721 CTAGTAAAGATCTTCATTCATTTTGTGATTAGACACTATAAATGCATTCTCCTCATTAGGGTAAA
255 CTAATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAA
* * * * * * *
52786 CGATATTGATAATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTTCATAAAATCATTGT
320 TGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCT-GTTTCCATAAAATAATTGT
* * * * * * * * **
52851 TTAT-CTATTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTTTTTTC-TTGGTTGGGA
384 TCATAC-CTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCA-TTCTTTCATCGATTCAGA
* * *
52914 ACCAAAAACACATTCCCTTCATT
447 ACCAAAAGCAAATTCCCTTCAAT
* * *
52937 AGGATACAAGACATAGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
* * * *
53002 ATCAAAGTTTGTCTCATTAATAAGACAAATATGAATAGTCCTACTAATCCGCATTCTTTTTAGGA
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGGA
* * * * * ** * *
53067 TTAGGCACCGTAAACATAGTTTTCTCATAATGATACACAATATTTATGCGTTGGTTTTGCAAGAA
131 TTAGGCACCATAAACATAG-TTTCTCATAAGGATACACGACATTGA--C---ACTTTGGCAAAAA
* * * * * *
53132 AGGCTTTCTTCCTACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGTGACAAACATGAATT
190 AGGCTTTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGATT
*
53197 CTAGA-AAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
255 CTA-ATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * * * * * * *
53261 ATGGTATTGATGATTTTCTTCTGCATGGAAATGTTTCGTTTGCCTTATTTTCCATAAAATTATTA
319 ATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCT-GTTTCCATAAAATAATTG
* * * * * * **
53326 TTCATCCCTTAAAAAAGGCAATCGTTGATTCTCGTAACAGTCTCCATTCTTTTCAT-GGTTGGGA
383 TTCATACCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTC-TTTCATCGATTCAGA
* * * *
53390 ACCAAAAACACATTCCCTTTATT
447 ACCAAAAGCAAATTCCCTTCAAT
*
53413 AGGATACATGACATTGATGCTTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAG
1 AGGATACACGACATTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAG
* * * *
53478 AATCAAAGTTTGTCTCCTTAATAAGACAAACGTGAATAGTCGTACTAATCCCCATTCTTTTCAGG
65 AATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGG
* * * * *
53543 ATTAGGCACCATAAACATTGTCATCTCCTAAGGATACACGATATTGACGCTTTGGTTTCATAAGA
130 ATTAGGCACCATAAACATAGT-TTCTCATAAGGATACACGACATTGACACTTTGG---CA-AA-A
* * ** * **
53608 AATGCTTTCTTCCCACTAGTTTTTATAATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGAT
189 AAGGCTTTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGAT
* * * ** *
53673 TCTAGTAAAAATCTTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTCCTCATTAGGGCAA
254 TCTAATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * * * *
53738 ATGATATTGATGATTTTCTATTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATTG
319 ATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCT-GTTTCCATAAAATAATTG
* * * ** * * * * **
53803 TTCATCCCTTAAATACGACACGCATTGATTCTCGTAACAGTCTCCATTATTTTC-TTGGTTGGGA
383 TTCATACCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATT-CTTTCATCGATTCAGA
* * * * *
53867 GCCAAAAACACATTCCTTTCATT
447 ACCAAAAGCAAATTCCCTTCAAT
* * *
53890 AGGATACA-TACATCGATGCTTTGGAGTCGCAAGAAAAGCTTTTCTTTCAACC----------G-
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
* *
53943 ----AAGTTTGTCTCTTTAATAAGGCAAATGTGAATAGTCTTGCTAATCCCCATTCTTTTCTA-G
66 ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTT-TAGG
** * * ** *
54003 ATTAGGCACCAT-AACATAGTCTTCTCATTGGGATAGACGATATTGATGCTTTGGTTTTGCAAGA
130 ATTAGGCACCATAAACATAGT-TTCTCATAAGGATACACGACATTGACACTTT-G----GCAAAA
* * * * * * *
54067 AAGGCTTTCTTCCCACCAATTTTTGT-ATAGTCTAAGTTCGTGCCTCAAATAAGTCAAACATGCA
189 AAGGCTTTCTTCCCACCAAATTTTATAAT-GTCTAAGTTCCTACCTCAAATGAGACAAACATGGA
** * * *
54131 TTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGTTA
253 TTCTAATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * * * * *
54196 AAAGATATTAATGATTTT-TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCTATAAAATCATA
318 AATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCT-GTTTCCATAAAATAATT
* * * * * * * * *
54260 GTTCATCCCCTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCTATTATTT-TTGTGATTGC-
382 GTTCATACCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTCTTTCAT-CGATT-CA
* *
54323 GAACCAAAACCACATTCCCTTC-AT
445 GAACCAAAAGCAAATTCCCTTCAAT
* * *
54347 AAGGATACATGACATTGATGCTTTGGTGTCGCAAGAATAGCTTTTCTTTCAACCGTTTTTGATAA
1 -AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAG
* * * *
54412 AATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCATACTAATCCCCATGCTCTTCAGG
65 AATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGG
* * * *
54477 ATTAGGCACCATAAACATTGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCTTAAGA
130 ATTAGGCACCATAAACATAGT-TTCTCATAAGGATACACGACATTGACACTTTGG---C--AAAA
* * * ** *
54542 AACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGTCTCAAATGAGACAAACAAGGAT
189 AAGGCTTTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGAT
* * *
54607 TCTAGTAAAGATCTTCTTTCATTTTGC-GATTAGGCACTATAAACGCATTCTCCTCATTAGGGTA
254 TCTAATAAAGATCTTCATTCATTTT-CTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * *
54671 AATGATATTGATGAATTTT-TTTTGCATTG-AAATGCTTCCTTTGCCTTTTTTTCCATAAAATCA
318 AATGATATTGATG-ATTTTCTTTTGCA-TGAAAATGTTTCCTTTGCC-CTGTTTCCATAAAATAA
*** * * * *
54734 TTGTTCAT-CGCTTAAATAAGGCAAGTGTTGATTCTCATAACAGTCTCCATTCTTTTC-TTGGTT
380 TTGTTCATAC-CTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTC-TTTCATCGATT
** * * **
54797 GGGAACCAAAAACACATTCCCTTCTTT
443 CAGAACCAAAAGCAAATTCCCTTCAAT
* * * * * *
54824 AGGATATATGACATTGATGCTTTTGTGTCGCATGAAAAGCTTTTCTTTTAACCGTTTTTAATAGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
** * ** * *
54889 ATCAAAGTTCAT-TTTTTGAATAAGACAAACATGAATAGTCTTACT-ATCCCCATTCTTTTCATG
66 ATCAAAGTTTGTCTCTTT-AATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGG
* * * **
54952 ATTAGGCACCATAAACATAGTTTTCTCATAAGGATACACGATATTTACGCTTTGGTTTAGCATGA
130 ATTAGGCACCATAAACATAG-TTTCTCATAAGGATACACGACATTGACACTTT-G----GCAAAA
* * * * **
55017 AAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCACAAATGTCACAAACATGGAT
189 AAGGCTTTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGAT
* * *
55082 TCTAGA-AAAGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCCTTATTAGGGTA
254 TCTA-ATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTA
* * * * * *
55146 AATGCTATTGATGATTTTCTTTTGCTTGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATT
318 AATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCT-GTTTCCATAAAATAATT
* * * ** * * * * * *
55211 ATTTATCCCTTAAATAAGGCAGGCGTTGATTCTCGTGACAGTCTCCAATCTTTTCAT-GGTT-GG
382 GTTCATACCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTC-TTTCATCGATTCAG
* * *
55274 AAACCAAAAACACATTCCCTTCATT
446 -AACCAAAAGCAAATTCCCTTCAAT
* * * *
55299 AGGATACAAGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTCATTGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
** * * * *
55364 ATCAAAGTTTGTCTCCCTAATAAGAC-AATCATGAATAGTCATACTAACCCCCATTCTTTTCAGG
66 ATCAAAGTTTGTCTCTTTAATAAGACAAAT-GTGAATAGTCTTACTAATCCCCATTCTTTTTAGG
* * * * *
55428 ATTAGGCACCATAAACATTGTCTTTTCATAAGGATACACGATATTGACACTTTAGTTTCATAAGT
130 ATTAGGCACCATAAACATAGT-TTCTCATAAGGATACACGACATTGACACTTT-G--GCA-AA-A
* * * **
55493 AACGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGTCTCAAATGAGACAAACATGGAT
189 AAGGCTTTCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGAT
* * * *
55558 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCATTAGGGTAA
254 TCTAATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAA
* * * * *
55623 AAGATATTGATGATTTTCTTTTGC-TTAGAAATGTTTCAC-TTGCCATATTTTCCTTAAAATCAA
319 ATGATATTGATGATTTTCTTTTGCATGA-AAATGTTTC-CTTTGCCCT-GTTTCCATAAAAT-AA
* * * * *
55686 -AGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGAAACAATCTCCATTCTTTTCGT-GATT-
380 TTGTTCATACCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTC-TTTCATCGATTC
* * * * *
55748 TGCAACCAAGAA-CACATTCCTTTTATT
444 AG-AACCAA-AAGCAAATTCCCTTCAAT
*** * * *
55775 AGGATACTTAACATTGATGCTTTGGTGTCGCAAGAAAAG-TGTTTATTTCAACCGCTTTTGGTAG
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCT-TTTCTTTCAACCGTTTTTGATAG
* * * * * * * * *
55839 AATCAGAGCTTGTTTCTTTAA-AACGATAAACGTGAATAGTCATATTAATCCCCATTCTTTTCAT
65 AATCAAAGTTTGTCTCTTTAATAA-GACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAG
* * * * **
55903 GATTAGGCACCATAAATATAGTCTTCTCATAAGGACACACGATATTGACGCTTTGGTTTTGCATG
129 GATTAGGCACCATAAACATAGT-TTCTCATAAGGATACACGACATTGACACTTT-G----GCAAA
* * * * *
55968 AAAGGATTTCTTCTCACC-AATTTATATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATTG
188 AAAGGCTTTCTTCCCACCAAATTT-TATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGG
* * * *
56032 ATTCTAGTAAAGATCTTCATTCAATTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGAG
252 ATTCTAATAAAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGG-G
* * * * * * *
56097 -AAATGGTATTGATGATTTTCTTTTGCATGGAAATTTTTCTTTTACCTTATTATCCATAAAATAA
316 TAAATGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCTGTT-TCCATAAAAT-A
* * * *
56161 ATT-TTCATCCCTTAAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCAT-GATT
379 ATTGTTCATACCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTC-TTTCATCGATT
**
56224 GGGAACCAAAAATGC--ATTCCCTTCAAT
443 CAGAACC-AAAA-GCAAATTCCCTTCAAT
* ** * * * *
56251 AAGATACTTGACATTGACGGTTTGGTGTCGCAAGAATAGCTTTTCTTTCAACCATTTTTGATAGA
1 AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
*
56316 ATCAAAGTTTGTTTCTT
66 ATCAAAGTTTGTCTCTT
56333 AA
Statistics
Matches: 5756, Mismatches: 690, Indels: 440
0.84 0.10 0.06
Matches are distributed among these distances:
426 84 0.01
427 170 0.03
428 2 0.00
430 17 0.00
431 2 0.00
433 1 0.00
434 1 0.00
435 30 0.01
436 9 0.00
437 1 0.00
438 52 0.01
439 5 0.00
440 1 0.00
441 1 0.00
443 1 0.00
450 2 0.00
457 5 0.00
458 118 0.02
459 202 0.04
460 66 0.01
461 5 0.00
462 1 0.00
463 5 0.00
464 53 0.01
465 2 0.00
466 9 0.00
467 30 0.01
468 1 0.00
469 184 0.03
470 274 0.05
471 121 0.02
472 22 0.00
473 127 0.02
474 442 0.08
475 1053 0.18
476 2212 0.38
477 430 0.07
478 8 0.00
480 1 0.00
481 6 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (469 bp):
AGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
ATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCTTACTAATCCCCATTCTTTTTAGGA
TTAGGCACCATAAACATAGTTTCTCATAAGGATACACGACATTGACACTTTGGCAAAAAAGGCTT
TCTTCCCACCAAATTTTATAATGTCTAAGTTCCTACCTCAAATGAGACAAACATGGATTCTAATA
AAGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATAT
TGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCTGTTTCCATAAAATAATTGTTCATACC
TTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTCTTTCATCGATTCAGAACCAAAAGC
AAATTCCCTTCAAT
Found at i:50675 original size:427 final size:437
Alignment explanation
Indices: 49869--50733 Score: 1178
Period size: 427 Copynumber: 2.0 Consensus size: 437
49859 GGCTTTCTTC
* * ** *
49869 CCACCAAATTTTATAATGTCTAGGTTCCTACCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
1 CCACCAAATTTTATAATGTCTAAGTTCATACCTCAAATGAGACAAACAAAGATTCTAGT-AACAT
*
49934 CTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGGTATTGATG
65 CTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCA-TAGGGTAAATGGTATTGATA
* **
49999 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATGAAATAATTTTTCATACCTTAA
129 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATAATAGTTCATACCTTAA
* *
50064 ATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTCATGATTGGGAACCAGAAATAAATT
194 ATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTCATGATTGGGAACCAAAAATAAATT
*
50129 CCCTTCAATAGGATACATGACATTGATGCTTTGATGTCGCAAGAAAACCTTTTCTTTCAACCGTT
259 CCCTTCAATAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAACCTTTTCTTTCAACCGTT
* * * ** * *
50194 TCTAATAGAATTAATGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCATACTAATCCCTATTC
324 TCTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTC
* * *
50259 TTTTCAGGATTAGGCACCATAAACATAG-TCTCATAAGGATTCACGTTT
389 TTCTCAGGATTAGACACCATAAACATAGCTCTCATAAGGATACACGTTT
* * * *
50307 CCACCAATTTTTATAATGTCTAAGTTTATGCCTCAAATGAGACAAACAAAGATTCTAGT-TCATC
1 CCACCAAATTTTATAATGTCTAAGTTCATACCTCAAATGAGACAAACAAAGATTCTAGTAACATC
*
50371 TTCATT-ATTTTTTGATTAGGCACTATAAACACATTCT-C-C-T-GGGTAAAT-G-A-TGATAAT
66 TTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATAGGGTAAATGGTATTGATAAT
* *
50428 TTT-TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATTAA-AGTTCATCCCTTAGA
131 TTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAA-TAATAGTTCATACCTTAAA
* * **
50491 TAAGGCAAGCGTTGATTCTCGTACCAGTCTCCATTCTTTTCATGATTGGGAACCAAAAATGCATT
195 TAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTC-TTTCATGATTGGGAACCAAAAATAAATT
** * * * * * * *
50556 CTTTTCATTAGGATACTTGACATTGACGTTTTGGTGTCGCAAGAATAGCTTTTCTTTCAATCGTT
259 CCCTTCAATAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAACCTTTTCTTTCAACCGTT
* * *
50621 TTTTATAGAATCAAAGTTTGTCTGTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTC
324 TCTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTC
*
50686 TTCTCAGGATTCGACACCATAAACATAGCCTTCTCATAAGGATACACG
389 TTCTCAGGATTAGACACCATAAACATAG-C-TCTCATAAGGATACACG
50734 ATATTGACGC
Statistics
Matches: 376, Mismatches: 46, Indels: 18
0.85 0.10 0.04
Matches are distributed among these distances:
426 84 0.22
427 172 0.46
428 1 0.00
429 1 0.00
430 24 0.06
431 1 0.00
433 1 0.00
434 1 0.00
435 30 0.08
436 9 0.02
438 52 0.14
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (437 bp):
CCACCAAATTTTATAATGTCTAAGTTCATACCTCAAATGAGACAAACAAAGATTCTAGTAACATC
TTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTCATAGGGTAAATGGTATTGATAAT
TTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATAATAGTTCATACCTTAAAT
AAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTCATGATTGGGAACCAAAAATAAATTCC
CTTCAATAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAACCTTTTCTTTCAACCGTTTC
TAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTCTT
CTCAGGATTAGACACCATAAACATAGCTCTCATAAGGATACACGTTT
Found at i:51380 original size:476 final size:475
Alignment explanation
Indices: 50307--56332 Score: 8038
Period size: 476 Copynumber: 12.7 Consensus size: 475
50297 ATTCACGTTT
** ** **
50307 CCACCAATTTTTATAATGTCTAAGTTTATGCCTCAAATGAGACAAACAAAGATTCTAGT--TCAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
* *
50370 CTTCATT-ATTTTTTGATTAGGCACTATAAACACATTCT-C-C--T-GGGTAAATG--A-TGATA
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* * * *
50426 ATTTT-TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATTAAAGTTCATCCCTTAG
131 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTCATCCCTTAA
* * **
50490 ATAAGGCAAGCGTTGATTCTCGTACCAGTCTCCATTCTTTTCATGATTGGGAACCAAAAATGCAT
196 ATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACAT
** * * * * *
50555 TCTTTTCATTAGGATACTTGACATTGACGTTTTGGTGTCGCAAGAATAGCTTTTCTTTCAATCGT
261 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGT
* * * * *
50620 TTTTTATAGAATCAAAGTTTGTCTGTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATT
326 TTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACGTGAATAGTCATACTAATCCCCATT
* * * *
50685 CTTCTCAGGATTCGACACCATAAACATAGCCTTCTCATAAGGATACACGATATTGACGCTTTGGT
391 CTTTTC-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGT
* * *
50750 TTCGTACGAACGGCTTTCTTC
455 TTCGCAAGAAAGGCTTTCTTC
* * * * * *
50771 TCTCCAATTTTTATAATGTCTATGTTCGTGCCTCAAATGAGACAAACATAGATTATAGTAATGAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
* * *
50836 ATTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGGTAAAGGATATTGATG
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* * * * *
50901 ATTTTCTTTTGCTTAG-AATCGTTTCATTTGCCATT-TTTTCCTTAAAATCAAAGTTCATCCCTT
131 ATTTTCTTTTGCATGGAAAT-GTTTCCTTTGCC-TTATTTTCCATAAAATCATAGTTCATCCCTT
** * * * * * * * *
50964 AAATAAGGCAAGCAATCATTCTCGAAACAATCCCCATTCTTTTCATGATTTGCAACCAAGAACAC
194 AAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACAC
* * * *
51029 ATTCCCTTCTTTGGGATACTTGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACC
259 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACC
* * * * *
51094 ATTTTTTATAGAATCAAAGCTTGTCTCTTTAATAAGGCAAACATGAATAGTCATACTAATCCCCA
324 GTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACGTGAATAGTCATACTAATCCCCA
* *
51159 TTCTTTTCGTGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATACTGATGCTTTG
389 TTCTTTTCG-GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTG
51224 GTTTCGCAAGAAAGGCTTTCTTC
453 GTTTCGCAAGAAAGGCTTTCTTC
** * *
51247 CCATGAATTTTTATAATGTCTAAGTTCGGGCCTCAAATGAGATAAACATGGATTCTAGTAAAGAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
* *
51312 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGGTATTTATG
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* * * * **
51377 ATTTTCTTTTGCATAGAAATGTTTCCTTTGCCCTATTTTTCATAAAATAATTTTTCATCCCTTAA
131 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTCATCCCTTAA
* *
51442 ATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCA-GGATTGGGAACCAAAAACGCA
196 ATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGG-TTGGGAACCAAAAACACA
* * *
51506 TTCCCTTCATTAGGATACATGACAGTGATGCTTTGGTATCGCAATAAAAGCTTTTCTTTCAACCG
260 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCG
* * * * * *
51571 TTTTTGATAGAA-AAAAATTTGTCTCCTGAATAAGACAAATGTGAATAGTTATACTAATCCCCAT
325 TTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACGTGAATAGTCATACTAATCCCCAT
* * * *
51635 TCTTTTCAGGATTAGGCACCATAAACATTGTCCTCTTAGAAGGATACACGATATTGACGCTTTGG
390 TCTTTTC-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGG
* *
51700 TTTCG-TAGAAACGCTTTCTTC
454 TTTCGCAAGAAAGGCTTTCTTC
*
51721 CCACCAA-TTTTATAATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
* *
51785 CTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGGTAAATAATATTGATG
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* *
51850 ATTTTC---TGCATGGAAATGTTTCCATTGCCTTATTTT-CATAAAATCATTGTTCATCCCTTAA
131 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTCATCCCTTAA
* * *
51911 ATAAGGCAAGCGTTGATTCTCATAACAATTTCCATTCTTTTCATGGTTGGGAACCAAAAACACAT
196 ATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACAT
* * * * *
51976 TCCCTTCTTTAGGATACATGACATTTATGCTTTGGTGTTGAAAGAAAAGCTATTCTTTCAACCGT
261 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGT
* * * *
52041 TTTTGATAGAATCAAAGTTTGTCTCATTAACAAGACAAATGTGAATAGTCTTACTAATCCCCATT
326 TTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACGTGAATAGTCATACTAATCCCCATT
* * * * * *
52106 CTTTTCATGATTAGGCACCATAAACGTAGTTTTCTCATAAGGATACACGATATTTATGCTTCGGT
391 CTTTTC-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGT
*
52171 TTTG-AACG-AAGGCTTTCTTC
455 TTCGCAA-GAAAGGCTTTCTTC
* * *
52191 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGTGTCAAACATGGATTCTAGAAAAGAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
* * * * *
52256 CTTTATTCATTTTGTGATAAGGCACTATAAACATATTCTCCTCCTTAGGGTAAATGGTATTGATG
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* *
52321 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATTA-TTAATGCCTTA
131 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCA-TAGTTCATCCCTTA
* * *
52385 AATAAGGCAAACGTTGATTCTCGTAACAGCCTCCAATCTTTTCATGGTTGGGAACCAAAAACACA
195 AATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACA
*
52450 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCAACCG
260 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCG
*
52515 TTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCATACTAATCCCCAT
325 TTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACGTGAATAGTCATACTAATCCCCAT
* * * * *
52580 TCTTTTTAGGATTAGGCACCATAAACATTGTATTCTCAGAAGGATGCACGATATTGACGCTTTGG
390 TC-TTTTCGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGG
* *
52645 TTTCGTAAGAAATGCTTTCTTC
454 TTTCGCAAGAAAGGCTTTCTTC
* * *
52667 CCACCAATTTTTATAATGTCTAAGTTCGTGTCTTAAATGGGACAAACATGGATTCTAGTAAAGAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
* ** * *
52732 CTTCATTCATTTTGTGATTAGACACTATAAATGCATTCTCCTCATTAGGGTAAACGATATTGATA
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* * * **
52797 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTTCATAAAATCATTGTTTATCTATTAA
131 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTCATCCCTTAA
* *
52862 ATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTTTTTTCTTGGTTGGGAACCAAAAACACAT
196 ATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACAT
* * *
52927 TCCCTTCATTAGGATACAAGACATAGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGT
261 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGT
* ** * *
52992 TTTTGATAGAATCAAAGTTTGTCTCATTAATAAGACAAATATGAATAGTCCTACTAATCCGCATT
326 TTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACGTGAATAGTCATACTAATCCCCATT
* * * * * * * *
53057 CTTTTTAGGATTAGGCACCGTAAACATAGTTTTCTCATAATGATACACAATATTTATGCGTTGGT
391 C-TTTTCGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGT
*
53122 TTTGCAAGAAAGGCTTTCTTC
455 TTCGCAAGAAAGGCTTTCTTC
* * * * *
53143 CTACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGTGACAAACATGAATTCTAGAAAAGAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
*
53208 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGGTATTGATG
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* * *
53273 ATTTTCTTCTGCATGGAAATGTTTCGTTTGCCTTATTTTCCATAAAATTATTA-TTCATCCCTTA
131 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCA-TAGTTCATCCCTTA
* *
53337 AAAAAGGCAATCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACA
195 AATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACA
*
53402 TTCCCTTTATTAGGATACATGACATTGATGCTTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACC
260 TTCCCTTCATTAGGATACATGACATTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACC
* *
53467 GTTTTTGATAGAATCAAAGTTTGTCTCCTTAATAAGACAAACGTGAATAGTCGTACTAATCCCCA
324 GTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACGTGAATAGTCATACTAATCCCCA
* * *
53532 TTCTTTTCAGGATTAGGCACCATAAACATTGTCATCTCCTAAGGATACACGATATTGACGCTTTG
389 TTCTTTTC-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTG
** *
53597 GTTTCATAAGAAATGCTTTCTTC
453 GTTTCGCAAGAAAGGCTTTCTTC
* * * *
53620 CCACTAGTTTTTATAATGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAAAAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
** *
53685 CTTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTCCTCATTAGGGCAAATGATATTGATG
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* *
53750 ATTTTCTATTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATTGTTCATCCCTTAA
131 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTCATCCCTTAA
* * * * * * *
53815 ATACGACACGCATTGATTCTCGTAACAGTCTCCATTATTTTCTTGGTTGGGAGCCAAAAACACAT
196 ATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACAT
* * *
53880 TCCTTTCATTAGGATACAT-ACATCGATGCTTTGGAGTCGCAAGAAAAGCTTTTCTTTCAACC--
261 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGT
* * * *
53942 --------G-----AAGTTTGTCTCTTTAATAAGGCAAATGTGAATAGTCTTGCTAATCCCCATT
326 TTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACGTGAATAGTCATACTAATCCCCATT
* ** * *
53994 CTTTTCTAGATTAGGCACCAT-AACATAGTCTTCTCATTGGGATAGACGATATTGATGCTTTGGT
391 CTTTTC-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGT
*
54058 TTTGCAAGAAAGGCTTTCTTC
455 TTCGCAAGAAAGGCTTTCTTC
* * * * * *
54079 CCACCAATTTTTGT-ATAGTCTAAGTTCGTGCCTCAAATAAGTCAAACATGCATTCTAGCAATGA
1 CCACCAATTTTTATAAT-GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGA
* * *
54143 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGTTAAAAGATATTAAT
65 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGAT
* * *
54208 GATTTT-TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCTATAAAATCATAGTTCATCCCCTA
130 GATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTCATCCCTTA
* * * * ** * * *
54272 AATAAGGCAAGCATTGATTCTCATAACAGTCTCTATTATTTTTGTGATTGCGAACCAAAACCACA
195 AATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACA
* *
54337 TTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAATAGCTTTTCTTTCAACCG
260 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCG
* *
54402 TTTTTGATAAAATCAAAGTTTGTCTCTTTAATAAGACAAATGTGAATAGTCATACTAATCCCCAT
325 TTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACGTGAATAGTCATACTAATCCCCAT
* * *
54467 GCTCTTCAGGATTAGGCACCATAAACATTGTCTTCTCATAAGGATACACGATATTGACGCTTTGG
390 TCTTTTC-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGG
** *
54532 TTTCTTAAGAAACGCTTTCTTC
454 TTTCGCAAGAAAGGCTTTCTTC
* *
54554 CCACCAATTTTTATAATGTCTAAGTTCGTGTCTCAAATGAGACAAACAAGGATTCTAGTAAAGAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
* * *
54619 CTTCTTTCATTTTGCGATTAGGCACTATAAACGCATTCTCCTCATTAGGGTAAATGATATTGATG
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* * * * *
54684 AATTTT-TTTTGCATTGAAATGCTTCCTTTGCCTTTTTTTCCATAAAATCATTGTTCATCGCTTA
131 -ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTCATCCCTTA
* * *
54748 AATAAGGCAAGTGTTGATTCTCATAACAGTCTCCATTCTTTTCTTGGTTGGGAACCAAAAACACA
195 AATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACA
* * * * *
54813 TTCCCTTCTTTAGGATATATGACATTGATGCTTTTGTGTCGCATGAAAAGCTTTTCTTTTAACCG
260 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCG
* ** * * *
54878 TTTTTAATAGAATCAAAGTTCAT-TTTTTGAATAAGACAAACATGAATAGTCTTACT-ATCCCCA
325 TTTTTGATAGAATCAAAGTTTGTCTCTTT-AATAAGACAAACGTGAATAGTCATACTAATCCCCA
* * *
54941 TTCTTTTCATGATTAGGCACCATAAACATAGTTTTCTCATAAGGATACACGATATTTACGCTTTG
389 TTCTTTTC-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTG
* *
55006 GTTTAGCATGAAAGGCTTTCTTC
453 GTTTCGCAAGAAAGGCTTTCTTC
* ** *
55029 CCACCAATTTTTATAATGTCTAAGTTCGTGCCACAAATGTCACAAACATGGATTCTAGAAAAGAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
* * *
55094 CTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCCTTATTAGGGTAAATGCTATTGATG
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* *
55159 ATTTTCTTTTGCTTGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATTA-TTTATCCCTTA
131 ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCA-TAGTTCATCCCTTA
* * * *
55223 AATAAGGCAGGCGTTGATTCTCGTGACAGTCTCCAATCTTTTCATGGTTGGAAACCAAAAACACA
195 AATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACA
* *
55288 TTCCCTTCATTAGGATACAAGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCG
260 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCG
* * ** * * *
55353 TTTTTCATTGAATCAAAGTTTGTCTCCCTAATAAGACAATCATGAATAGTCATACTAACCCCCAT
325 TTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACGTGAATAGTCATACTAATCCCCAT
* * * *
55418 TCTTTTCAGGATTAGGCACCATAAACATTGTCTTTTCATAAGGATACACGATATTGACACTTTAG
390 TCTTTTC-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGG
** * *
55483 TTTCATAAGTAACGCTTTCTTC
454 TTTCGCAAGAAAGGCTTTCTTC
* * *
55505 CCACCAATTTTTATAATGTCTAAGTTCATGTCTCAAATGAGACAAACATGGATTCTAGTAATGAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
* *
55570 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCATTAGGGTAAAAGATATTGATG
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* * * * *
55635 ATTTTCTTTTGCTTAGAAATGTTTCAC-TTGCCATATTTTCCTTAAAATCAAAGTTCATCCCTTA
131 ATTTTCTTTTGCATGGAAATGTTTC-CTTTGCCTTATTTTCCATAAAATCATAGTTCATCCCTTA
* * * * * * * *
55699 AATAAGGCAAGCATTGATTCTCGAAACAATCTCCATTCTTTTCGTGATTTGCAACCAAGAACACA
195 AATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACA
* * * * *
55764 TTCCTTTTATTAGGATACTTAACATTGATGCTTTGGTGTCGCAAGAAAAG-TGTTTATTTCAACC
260 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT-TTTCTTTCAACC
* * * * * * *
55828 GCTTTTGGTAGAATCAGAGCTTGTTTCTTTAA-AACGATAAACGTGAATAGTCATATTAATCCCC
324 GTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAA-GACAAACGTGAATAGTCATACTAATCCCC
* * *
55892 ATTCTTTTCATGATTAGGCACCATAAATATAGTCTTCTCATAAGGACACACGATATTGACGCTTT
388 ATTCTTTTC-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTT
* * *
55957 GGTTTTGCATGAAAGGATTTCTTC
452 GGTTTCGCAAGAAAGGCTTTCTTC
* * * *
55981 TCACCAATTTATATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATTGATTCTAGTAAAGAT
1 CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
* * *
56046 CTTCATTCAATTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGAG-AAATGGTATTGAT
66 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG-GTAAATGATATTGAT
* * * * * *
56110 GATTTTCTTTTGCATGGAAATTTTTCTTTTACCTTATTATCCATAAAAT-AAATTTTCATCCCTT
130 GATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATA-GTTCATCCCTT
* **
56174 AAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAATGC
194 AAATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACAC
* * * * * *
56239 ATTCCCTTCAATAAGATACTTGACATTGACGGTTTGGTGTCGCAAGAATAGCTTTTCTTTCAACC
259 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACC
* *
56304 ATTTTTGATAGAATCAAAGTTTGTTTCTT
324 GTTTTTGATAGAATCAAAGTTTGTCTCTT
56333 AA
Statistics
Matches: 4871, Mismatches: 622, Indels: 126
0.87 0.11 0.02
Matches are distributed among these distances:
458 127 0.03
459 209 0.04
460 65 0.01
464 52 0.01
465 1 0.00
466 9 0.00
467 30 0.01
468 1 0.00
469 149 0.03
470 152 0.03
471 119 0.02
472 7 0.00
473 121 0.02
474 119 0.02
475 997 0.20
476 2297 0.47
477 416 0.09
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (475 bp):
CCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGAT
CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
ATTTTCTTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCATAGTTCATCCCTTAA
ATAAGGCAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAACACAT
TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGT
TTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACGTGAATAGTCATACTAATCCCCATT
CTTTTCGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTT
TCGCAAGAAAGGCTTTCTTC
Done.