genome.fa.s684.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold684
Parameters: 2 7 7 80 10 50 1000
Length:  61720

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698--726	2	14.5	2	100	0	58	51	0	0	48	1.00
2322--2429	50	2.2	50	84	0	144	40	17	9	32	1.81
4532--4566	16	2.2	16	94	0	61	62	5	2	28	1.32
4562--4598	16	2.3	16	90	0	56	56	8	5	29	1.51
5637--5675	20	2.0	19	95	5	69	53	0	5	41	1.23
5860--5891	16	1.9	17	93	6	57	59	18	3	18	1.51
7438--7482	7	6.6	7	87	2	65	37	0	0	62	0.96
7445--7509	12	5.1	12	80	12	51	32	1	3	63	1.19
10179--10211	15	2.2	15	100	0	66	18	12	27	42	1.85
11890--11919	15	2.0	15	93	0	51	43	0	0	56	0.99
12034--12058	13	1.9	13	100	0	50	44	0	0	56	0.99
12134--12255	58	2.1	59	93	3	212	42	19	2	35	1.65
17151--17186	11	3.4	10	85	14	54	50	0	0	50	1.00
18046--18094	21	2.3	23	82	10	59	51	2	0	46	1.12
18593--18684	16	5.4	17	74	16	57	53	1	0	45	1.07
18642--18693	19	2.9	19	75	13	58	50	0	0	50	1.00
18628--18693	35	1.9	33	82	14	80	51	0	0	48	1.00
18642--18700	18	3.2	19	80	9	68	50	0	0	49	1.00
19112--19144	12	2.8	12	90	4	50	0	15	0	84	0.61
19268--19307	9	4.6	9	90	3	64	35	0	0	65	0.93
19722--19896	28	6.4	26	71	16	106	65	1	0	33	1.05
19777--19859	18	4.5	18	77	4	85	67	1	0	31	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19723--19898	14	12.9	14	69	16	81	65	1	0	32	1.04
19782--19894	10	11.7	10	70	20	64	66	0	0	32	0.98
19771--19898	30	4.5	28	67	21	86	66	0	0	32	0.97
19906--19950	14	3.2	15	79	20	53	0	24	0	75	0.80
19899--19952	11	5.1	11	82	8	51	1	24	0	74	0.92
19906--19943	10	3.8	10	83	10	51	0	23	0	76	0.79
19901--19961	25	2.4	25	83	8	70	1	26	0	72	0.94
19912--19958	15	3.2	15	79	11	53	0	27	0	72	0.85
22914--22960	22	2.2	22	84	3	60	59	12	2	25	1.45
22947--22989	15	2.8	15	78	3	50	55	16	6	20	1.64
27544--27608	23	2.7	25	83	11	82	27	3	0	69	1.03
29862--30080	34	6.5	34	82	1	235	25	6	26	41	1.79
29862--30082	102	2.2	101	86	4	311	24	6	27	41	1.79
31394--31428	13	2.7	13	90	0	52	37	17	14	31	1.89
31456--31485	14	2.1	14	93	0	51	36	6	26	30	1.82
31486--31540	21	2.5	22	94	5	103	36	10	25	27	1.89
31528--31558	10	3.1	10	90	0	53	41	6	29	22	1.78
31585--31718	53	2.5	53	88	1	205	27	16	17	38	1.92
31706--31760	21	2.7	20	80	5	65	30	14	16	38	1.89
31799--31839	21	2.0	21	85	9	57	39	7	12	41	1.70
32092--32156	23	2.7	25	83	11	82	27	3	0	69	1.03
33287--33314	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34265--34323	18	3.4	18	82	13	63	49	0	0	50	1.00
34258--34329	27	2.8	25	83	10	85	50	0	0	50	1.00
34258--34336	25	3.1	27	79	17	89	49	0	0	50	1.00
35763--35827	34	1.9	34	84	6	87	61	0	1	36	1.05
36204--36261	16	3.3	18	76	11	66	46	0	0	53	1.00
36192--36281	35	2.5	35	77	13	103	51	0	0	48	1.00
36225--36316	27	3.4	27	77	14	82	51	0	0	48	1.00
36206--36294	29	2.8	32	78	13	87	50	0	0	49	1.00
36275--36385	40	2.6	42	78	13	122	46	0	0	53	1.00
36346--36409	21	3.2	20	76	17	69	50	0	0	50	1.00
36369--36407	14	2.9	14	82	17	55	56	0	0	43	0.99
36436--36481	20	2.2	21	84	3	58	65	2	0	32	1.05
36419--36489	29	2.4	29	83	2	97	64	1	0	33	1.02
36516--36562	17	2.8	17	78	18	53	48	0	0	51	1.00
36977--37012	3	12.0	3	100	0	72	66	0	33	0	0.92
37716--37770	24	2.2	25	81	9	60	45	0	5	49	1.25
38409--38462	26	2.0	27	85	3	74	55	0	0	44	0.99
38417--38476	14	4.5	14	72	15	56	51	0	0	48	1.00
38417--38476	27	2.3	25	88	11	93	51	0	0	48	1.00
38428--38486	28	2.1	27	81	9	66	50	1	3	44	1.28
38870--38925	22	2.6	21	91	8	94	66	0	0	33	0.92
39093--39137	19	2.2	21	84	7	58	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39129--39171	17	2.4	19	80	7	54	62	0	2	34	1.08
39298--39333	11	3.4	10	85	14	54	50	0	0	50	1.00
40200--40248	21	2.3	23	82	10	59	51	2	0	46	1.12
40747--40838	16	5.4	17	74	16	57	53	1	0	45	1.07
40796--40847	19	2.9	19	75	13	58	50	0	0	50	1.00
40782--40847	35	1.9	33	82	14	80	51	0	0	48	1.00
40796--40854	18	3.2	19	80	9	68	50	0	0	49	1.00
41246--41290	24	2.0	24	86	8	67	64	4	4	26	1.32
42489--42568	17	4.5	17	69	13	54	51	1	0	47	1.08
42487--42587	35	2.8	37	76	22	99	50	0	0	48	1.07
42708--42776	21	3.0	22	72	10	59	52	2	0	44	1.16
42706--42766	21	2.7	24	77	15	65	59	3	0	37	1.14
42847--43191	162	2.1	162	95	2	629	47	6	0	45	1.32
44045--44078	17	1.9	18	88	5	52	58	0	0	41	0.98
44129--44231	51	2.0	52	96	1	190	48	3	0	47	1.20
44142--44251	51	2.2	50	83	6	132	53	3	0	42	1.18
44224--44279	26	2.1	27	83	12	71	55	0	0	44	0.99
44859--44899	12	3.2	12	83	10	55	75	2	0	21	0.92
45769--45805	19	2.0	18	89	5	56	40	0	0	59	0.97
45856--45896	21	2.0	20	86	13	57	48	2	0	48	1.14
47975--48017	19	2.2	20	87	4	61	60	0	0	39	0.97
47992--48037	16	2.9	16	75	18	51	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47983--48021	20	2.0	19	95	5	69	58	0	0	41	0.98
48202--48244	16	2.7	15	79	10	50	60	13	4	20	1.51
49281--49323	20	2.1	20	91	4	68	39	0	16	44	1.48
49281--49323	21	2.0	22	91	8	72	39	0	16	44	1.48
56308--56384	20	3.8	20	83	8	102	36	11	14	37	1.82
56405--56488	13	5.5	13	71	28	60	35	17	13	33	1.89
56413--56475	19	3.7	18	76	24	73	36	17	12	33	1.88
56405--56490	32	2.7	32	96	0	163	37	17	12	32	1.88
57200--57623	52	8.6	49	72	8	272	32	17	26	24	1.96
57340--57524	101	1.8	101	92	0	316	32	17	25	23	1.97
57333--57571	49	4.8	51	80	5	222	33	17	25	24	1.96
58976--59013	11	3.5	11	85	0	58	44	7	5	42	1.56
59687--59741	25	2.2	25	77	6	58	41	0	0	58	0.98

Tables:   1

The End!