Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold685
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35525
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Found at i:733 original size:19 final size:17
Alignment explanation
Indices: 709--762 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 17
699 CCATCATGGT
709 TGTATCGATACAAATAG
1 TGTATCGATACAAATAG
*
726 AATGTATCAATACACAAGCTAG
1 --TGTATCGATACA-AA--TAG
748 TGTATCGATACAAAT
1 TGTATCGATACAAAT
763 CCATCAGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 1 0.03
19 13 0.43
20 13 0.43
22 3 0.10
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.28
Consensus pattern (17 bp):
TGTATCGATACAAATAG
Found at i:906 original size:20 final size:21
Alignment explanation
Indices: 864--908 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
854 CAAGCTACTA
864 TATCAATACAAGCCTTAAAAG
1 TATCAATACAAGCCTTAAAAG
* *
885 TATCAATACATG-CTTCAAAG
1 TATCAATACAAGCCTTAAAAG
905 TATC
1 TATC
909 GATAGAAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (21 bp):
TATCAATACAAGCCTTAAAAG
Found at i:3232 original size:4 final size:4
Alignment explanation
Indices: 3225--3251 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
3215 CAAAACAAAC
3225 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
3252 CACCTCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:5410 original size:51 final size:51
Alignment explanation
Indices: 5342--5506 Score: 215
Period size: 51 Copynumber: 3.2 Consensus size: 51
5332 ATAACAGGGC
* * * * * ***
5342 TGGAGTATCTCCAATTGTGGAAAATCGATGCTTTAGAAATAAGGCCGGGGT
1 TGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCGGGGT
* *
5393 TGGAGTATCCCCGATTGT-GAGAAATTGGTGTTTTGGAAATAAAATCGGAGT
1 TGGAGTATCCCCGATTGTGGA-AAATTGGTGTTTTAGAAATAAAATCGGGGT
*
5444 TGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAATCGGGGT
1 TGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCGGGGT
5495 TGGAGTATCCCC
1 TGGAGTATCCCC
5507 TCGAAAATAA
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
50 2 0.02
51 95 0.96
52 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (51 bp):
TGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCGGGGT
Found at i:5525 original size:28 final size:29
Alignment explanation
Indices: 5489--5562 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 29
5479 GAAATAAAAT
5489 CGGGGTTGGAGTATCCCCTCGA-AAATAA
1 CGGGGTTGGAGTATCCCCTCGAGAAATAA
* *
5517 CGGGATTGGAGTAT--CCTCGATGACATAA
1 CGGGGTTGGAGTATCCCCTCGA-GAAATAA
*
5545 CGGGGTTGGAGTACCCCC
1 CGGGGTTGGAGTATCCCC
5563 GATTATGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
26 6 0.16
28 30 0.79
30 2 0.05
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCCCTCGAGAAATAA
Found at i:5585 original size:107 final size:107
Alignment explanation
Indices: 5442--5682 Score: 306
Period size: 107 Copynumber: 2.3 Consensus size: 107
5432 TAAAATCGGA
* *** * *
5442 GTTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCCCC
* * * * *
5507 TCGAAAATAAC-GGGATTGGAGTATCCTCGATGACATAACGGG
66 TCGAAAATAACAAGG-TTAGAGTATCCCCGATGAAATAACGAG
* * * *
5549 GTTGGAGTACCCCCGATTATGAAAAATCAATATTTTAGATATAAAGCCGGGGTTAGAGTATCCCC
1 GTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCCCC
*
5614 TCGGAAATAACAAGGTTAGAGTATCCCCGATGAAATAACGAG
66 TCGAAAATAACAAGGTTAGAGTATCCCCGATGAAATAACGAG
5656 GTTGGAGTATCCCC-AGTTGTGAAAAAT
1 GTTGGAGTATCCCCGA-TTGTGAAAAAT
5683 TTAGAAATTT
Statistics
Matches: 114, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
106 1 0.01
107 111 0.97
108 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (107 bp):
GTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCCCC
TCGAAAATAACAAGGTTAGAGTATCCCCGATGAAATAACGAG
Found at i:5639 original size:28 final size:28
Alignment explanation
Indices: 5599--5669 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
5589 ATAAAGCCGG
**
5599 GGTTAGAGTATCCCCTCGGAAATAACAA
1 GGTTAGAGTATCCCCGAGGAAATAACAA
* *
5627 GGTTAGAGTATCCCCGATGAAATAACGA
1 GGTTAGAGTATCCCCGAGGAAATAACAA
*
5655 GGTTGGAGTATCCCC
1 GGTTAGAGTATCCCC
5670 AGTTGTGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (28 bp):
GGTTAGAGTATCCCCGAGGAAATAACAA
Found at i:6786 original size:20 final size:20
Alignment explanation
Indices: 6761--6808 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
6751 AAATCTGATT
6761 TTGGCACACAAATAAGCATC
1 TTGGCACACAAATAAGCATC
* *
6781 TTGGCACATAAATAAGCATG
1 TTGGCACACAAATAAGCATC
6801 TTGGCACA
1 TTGGCACA
6809 AACAACATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.23
Consensus pattern (20 bp):
TTGGCACACAAATAAGCATC
Found at i:8010 original size:20 final size:20
Alignment explanation
Indices: 7985--8039 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
7975 AAAATGCCTG
*
7985 AATATATCGATACATTGTAA
1 AATATATCGATACATTGCAA
*
8005 AATATATCGATACAATGCAA
1 AATATATCGATACATTGCAA
* *
8025 AATGTATTGATACAT
1 AATATATCGATACAT
8040 CTGGGTAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (20 bp):
AATATATCGATACATTGCAA
Found at i:8079 original size:12 final size:13
Alignment explanation
Indices: 8054--8082 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8044 GTAAACCCAG
8054 AATGTATCGATAC
1 AATGTATCGATAC
8067 AATGTAT-GATAC
1 AATGTATCGATAC
8079 AATG
1 AATG
8083 GACAATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:8102 original size:20 final size:20
Alignment explanation
Indices: 8065--8120 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
8055 ATGTATCGAT
*
8065 ACAATGTAT-GATACAATGG
1 ACAATGTATCGATACAATGA
*
8084 ACAATGTATCGATATAATGA
1 ACAATGTATCGATACAATGA
8104 ACAATGTATCGATACAA
1 ACAATGTATCGATACAA
8121 ATTGTGAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 9 0.27
20 24 0.73
ACGTcount: A:0.45, C:0.12, G:0.16, T:0.27
Consensus pattern (20 bp):
ACAATGTATCGATACAATGA
Found at i:8328 original size:13 final size:13
Alignment explanation
Indices: 8310--8336 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8300 GTCCTTTTTT
8310 GCATCCCGAACAC
1 GCATCCCGAACAC
8323 GCATCCCGAACAC
1 GCATCCCGAACAC
8336 G
1 G
8337 TCCCCATACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.44, G:0.19, T:0.07
Consensus pattern (13 bp):
GCATCCCGAACAC
Found at i:8803 original size:53 final size:53
Alignment explanation
Indices: 8745--8851 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
8735 TTAATTTAAG
* *
8745 AAAGACAATGGAGAAAGAAATCGCCATATTCTACCAACAAGTTTCCTTTCCCT
1 AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
8798 AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
1 AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
8851 A
1 A
8852 TTTAGTATTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.23
Consensus pattern (53 bp):
AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
Found at i:8965 original size:23 final size:23
Alignment explanation
Indices: 8938--8983 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
8928 TTCAGCAAAA
8938 AAAAAAGAGAGAAAAGA-GAGAAAG
1 AAAAAAGA-A-AAAAGAGGAGAAAG
*
8962 AAAAAAGAAAAAATAGGAGAAA
1 AAAAAAGAAAAAAGAGGAGAAA
8984 ATATAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 7 0.35
24 8 0.40
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (23 bp):
AAAAAAGAAAAAAGAGGAGAAAG
Found at i:9002 original size:31 final size:32
Alignment explanation
Indices: 8936--9009 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
8926 AGTTCAGCAA
*
8936 AAAAAAAAGAGAGAAAAGAGAGAAAGAAAAAAG
1 AAAAAATAG-GAGAAAAGAGAGAAAGAAAAAAG
* * *
8969 AAAAAATAGGAGAAAATATAGAAA-AAAATAG
1 AAAAAATAGGAGAAAAGAGAGAAAGAAAAAAG
*
9000 AAAAACTAGG
1 AAAAAATAGG
9010 CTAGTTTTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
31 15 0.42
32 13 0.36
33 8 0.22
ACGTcount: A:0.72, C:0.01, G:0.20, T:0.07
Consensus pattern (32 bp):
AAAAAATAGGAGAAAAGAGAGAAAGAAAAAAG
Found at i:9449 original size:31 final size:31
Alignment explanation
Indices: 9414--9475 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
9404 GTCGAAACTT
9414 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
1 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
9445 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
1 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
9476 CTGGTTGGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (31 bp):
GTTGAATCATTGTCTTGCTTGCTTAAACAGG
Found at i:13810 original size:13 final size:13
Alignment explanation
Indices: 13792--13818 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13782 ACATTATGCT
13792 TTGTATCGATACA
1 TTGTATCGATACA
13805 TTGTATCGATACA
1 TTGTATCGATACA
13818 T
1 T
13819 GATCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:13815 original size:33 final size:32
Alignment explanation
Indices: 13773--13837 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
13763 CACACCAAGA
* * *
13773 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATGAT-CATTGTATCAATACAT
13806 TGTATCGATACATGATCATTGTATCAATACAT
1 TGTATCGATACATGATCATTGTATCAATACAT
13838 GGACCATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATGATCATTGTATCAATACAT
Found at i:13847 original size:20 final size:20
Alignment explanation
Indices: 13802--13878 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
13792 TTGTATCGAT
13802 ACATTGTATCGATACAT-GA
1 ACATTGTATCGATACATGGA
* *
13821 TCATTGTATCAATACATGGA
1 ACATTGTATCGATACATGGA
*
13841 CCATTGTATCGATACATGGA
1 ACATTGTATCGATACATGGA
*
13861 AAATTGTATCGATACATG
1 ACATTGTATCGATACATG
13879 AAACTAGCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 15 0.29
20 36 0.71
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (20 bp):
ACATTGTATCGATACATGGA
Found at i:13944 original size:13 final size:13
Alignment explanation
Indices: 13923--13953 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
13913 TGATACATGG
*
13923 TACAATGTATCGA
1 TACATTGTATCGA
13936 TACATTGTATCGA
1 TACATTGTATCGA
13949 TACAT
1 TACAT
13954 GATGAAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:13968 original size:33 final size:33
Alignment explanation
Indices: 13907--13975 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
13897 TACCCACTCT
* * * *
13907 TTGTATTGATACATGGTACAATGTATCGATACA
1 TTGTATCGATACATGATACAATGAATCGATAAA
13940 TTGTATCGATACATGATGA-AATGAATCGATAAA
1 TTGTATCGATACATGAT-ACAATGAATCGATAAA
13973 TTG
1 TTG
13976 CTTGTAATGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (33 bp):
TTGTATCGATACATGATACAATGAATCGATAAA
Found at i:20328 original size:473 final size:472
Alignment explanation
Indices: 18867--24225 Score: 6425
Period size: 473 Copynumber: 11.3 Consensus size: 472
18857 AGGAATCAAA
* * *
18867 GTTTGTCCCATTTGAGGTACGAACTTAAACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGT
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGT
* ** **
18932 GAAACGAAAGCATCAATGTGATGTATCCTATTGAGAAGACAATGTTTATGGTGCCGAAT-CTAGA
66 GAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCT-GA
*
18996 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATC
130 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* *** *
19061 AAAAATGGTGGAA--AAAAGTTTTTCTAATGACCCCAAAGCATCAATTTCATGTATCCTAATGAA
195 AAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATCAATTTCA--TATCATAATGAA
* * * * * *
19124 GGGAATGTGTTTTGGC-TCCGATTCTTGTAAAGAATGGAGTTTGATGCAAGAATCGATGCTTGTC
258 GGGAATGTGTTTTGGCTTCC-AATCTTGTAAAGAAT-GAGATAGTTACGAGAATCGATGCTTGTC
*
19188 TTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGC
321 TTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* *
19253 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAA
386 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
19318 GAAGATCATTACTAGAATCCAT
451 GAAGATCATTACTAGAATCCAT
* * * * * * *
19340 GTTTGTTGCTTTTGCTTTTGATGCATGAACTTAGGCTTTGCATAAAATGGTGGGAAAAAAACCTT
1 GTTTG-T-C---T-CATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTT
* * * * ** *
19405 TTTTGTGAAACGAAAGCATCGATATAACGTATTGTAAAGAGAAGACTATGTTTATGGTGCCTTAT
60 TCTTGTGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTAT
* * * **
19470 CCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAGGAGACATGCTTTGATT
125 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * * *
19535 CTAACAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAATGCATCAATTTCATGTAACCTA
190 CTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATCAATTTCA--TATCATA
* * **
19600 ATGAAGGGAATGTGTTTTGGCTTCACAATCTTGGAAAGAACTGATACCGTTACGAGAATCGATGC
253 ATGAAGGGAATGTGTTTTGGCTTC-CAATCTTGTAAAGAA-TGAGATAGTTACGAGAATCGATGC
* * * *
19665 TTGTTTTCTTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCA
316 TTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
*
19730 AAAGAAAATCATCAATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
381 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
*
19795 TGAATGATGATCATTACTAGAATCCAT
446 TGAATGAAGATCATTACTAGAATCCAT
* * * * *
19822 GTTTCTCTTATTTAAGGCACGAACTTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTTTTG
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTG
* * * * * ** *
19886 CGAAATGAAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGTTGTGTTATCTTG
65 TGAAACG-AAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTG
* * * *
19951 AAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTAATTAAAAGACAAACTTTGATTTTAT
129 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
20016 CAGAAACGGTGGAA-GAAAATGTTTTTCTTGCGACCCCAAAGCATCAATTTCATAT-AT-ATAAA
194 CAAAAACGGTGGAAGGAAAA-GTTTTTCTTGCGACCCCAAAGCATCAATTTCATATCATAATGAA
* * ** * *
20078 GGGAATGTGTTTTGGCTTTACAATCTTGAAAAGAACTGAGGCAGTTATGAGAATTGATGCTTGTC
258 GGGAATGTGTTTTGGC-TTCCAATCTTGTAAAGAA-TGAGATAGTTACGAGAATCGATGCTTGTC
* * *
20143 TTATTTAGGGGATGAACTTTGAATTT-AGGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAG
321 TTATTTAAGGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * *
20207 AAAATCATCAATTTCATTTATGCTAAT-AGGGGGAATG-CTTCATAGTGCCTAATCACAAAATGA
385 AAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * *
20270 ATGAAGATTATTACCAGAATCTAA
449 ATGAAGATCATTACTAGAATCCAT
* * * * * *
20294 ATTTGTCTCATATGAGGCACGTACTGAAGACTTTACAAAAAATGGTTGGAAAAAAGCCTTTCTTA
1 GTTTGTCTCATTTGAGGCACGAACT-TAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * *
20359 TGAAATGAAAGTATCAATATGATGTATCCTAAAGAGAAAACTATGTTTATGGTGCCTTATCCTGA
65 TGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
* * * *
20424 AAAGACTAGGGATTAGTATGAGT-TTCATGTTTGTCTTATTTGAGAGA-AAGAGTTTGATTCTAT
130 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA-ACTTTGATTCTAT
* * * *
20487 CAAAAACGATGGAAGGAAAAGTTTTTCTTGCGAACCCAAAGAATCAATTTCATGTATCCTAATGA
194 CAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATCAATTTCA--TATCATAATGA
* * * *
20552 AGGGAATGTGTTTTGGC-TCCGATTCTCGTAAAGAATGGAGATTGTTACGAGAAAT-GATGCTTA
257 AGGGAATGTGTTTTGGCTTCC-AATCTTGTAAAGAAT-GAGATAGTTACGAG-AATCGATGCTTG
* * * *
20615 TCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCCATACAAAA
319 TCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * *
20680 GAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATCGTGCCTAA-C-CTAAATTG
384 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATG
* * * *
20743 AAAGAAGATCGTTACTAAAATTCAT
448 AATGAAGATCATTACTAGAATCCAT
* * * * * *
20768 GTTTGTCTCTTTTGAAGCAGGAACTTAGATTTTACAAAAAATGGTGGG-AGAAAGCCTTTCTTGG
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGT
* * * * * * * *
20832 GAAATGAGAGCACCAATATGGTGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATTCAGAA
66 GAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAA
* * *
20897 AATAATGGGGATTAGTATGAGTATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAACA
131 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * *
20962 GAAACGGTGGAAGGAAAATTTTTTCTTGCGACACCAAAGCATCAATTTTGTATATCCTAATGATG
196 AAAACGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATCAA-TTT-CATATCATAATGAAG
* ** * * * * *
21027 GGAATGTGTTTTGTC-TCCAATTCTCATAAAGAATGGAGATTGTTATGAGAAACGATGCTTTTGT
259 GGAATGTGTTTTGGCTTCCAA-TCTTGTAAAGAAT-GAGATAGTTACGAGAATCGATGCTTGTCT
* * ** * *
21091 TATTTAAAGGTTGAACTTTGATTTAAAGGAAAATTA-GGCGGAGAAAAGGTTTCCAAGCAAAAGA
322 TATTTAAGGGATGAACTTTGATTTAAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * *
21155 AATTCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAAT-CCTAATCACGAAATAAAT
386 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
*
21219 GAAGATCGTTACTAGAATCCAT
451 GAAGATCATTACTAGAATCCAT
* * * * **
21241 GTTTATCTCTTTTGAGGCATGAACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTCTTAC
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGT
* * * *
21306 GAAATGAAAGCATCAATATGATGTATCC-AAATGAGAAGAAAATGTTTATGGTGCCTAATCCGGA
66 GAAACGAAAGCATCAATATGATGTATCCTAAA-GAGAAGACAATGTTTATGGTGCCTTATCCTGA
* * *
21370 AAAGAATGGGGATTAGTATGAGTGTTCATGTTAGTCTTATTTAAGAGA-AAACTTTGATTCTATT
130 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * * *
21434 AAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATTAATTTCCTGTAACCTAATGAA
195 AAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATCAATTT-C-ATATCATAATGAA
** * * * * * * * * *
21499 AAGATTGTGTTTTGGC-TCCGATTCTCGTGAGGAGTGGAGATTGTTACGAGAATTGATGCTTGTT
258 GGGAATGTGTTTTGGCTTCC-AATCTTGTAAAGAAT-GAGATAGTTACGAGAATCGATGCTTGTC
* * * * *
21563 TTATTT-AGGGAATTAACTTTGATTTAAAGGAAAAAAGGTCAAAGAAAAGATTTCCGTGCAAAAC
321 TTATTTAAGGG-ATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * *
21627 AAAATCATCAATATCAATAATCCTAATGAGGAGAATGCGTTTATAGTGCC-AAGTGACAAAATGA
385 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA-TCACAAAATGA
*
21691 ATGAAGATCATTACTAGAATCCAC
449 ATGAAGATCATTACTAGAATCCAT
* * *
21715 GTTTGTCTCATTTGAGGCACGAACTTAGACCTTA-AAAAATTTGGTGGGAAAAATGCCTTTCTTG
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTG
* * * * **
21779 CT-AAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTCATGTTGTGTTATCCTG
65 -TGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTG
* *
21843 AAAAGAATGGGGATTAGTATGAGTTTTCATGTTTGTCTTATTTATGAGACAAACTTTGATTCTAT
129 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
21908 CAAAAA-GTGTGGAAGGAAAAGTTTTTCTTCCAACACCAAAGCATCAATTTCCTGTATCCTAATG
194 CAAAAACG-GTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATCAATTT-C-ATATCATAATG
* * * * *
21972 AAGGAAATGTGTTTTGGC-TCCAATTCTTGTAAAGAATAGAGATTGTTACGAGAAACAATGCTTA
256 AAGGGAATGTGTTTTGGCTTCCAA-TCTTGTAAAGAAT-GAGATAGTTACGAGAATCGATGCTTG
* * *
22036 TCTTATTTAGGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAT
319 TCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* *
22101 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAACCACAAAATGA
384 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
*
22166 AAGAAGATCATTACTAGAATCCAT
449 ATGAAGATCATTACTAGAATCCAT
* ** *
22190 GTTTGTCAT-TTTTGAAACACGAACTTAGACTTTACAAAAAATGGTAGGAAAAAAGCCTTTCTTG
1 GTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
** * * *
22254 CAAAACGAAAGCATCAATATGATGTATCATAAAGAGAAGACTATGTTTATGGTGCCTTATCCTAA
65 TGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
22319 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
130 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* *** * * * *
22384 AAAAACGGTGGAA-AAAAAGTTTTTCTAATGACCCCAAAGCATAAATTTCATGTAACCTAAAGAA
195 AAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATCAATTTCA--TATCATAATGAA
* * * * * * * *
22448 GGAAATGTGTTTTGGGTTCACAATCTTGGAAAGAACTGACACATTTACGAGAATCGGTGTTTGTC
258 GGGAATGTGTTTTGGCTTC-CAATCTTGTAAAGAA-TGAGATAGTTACGAGAATCGATGCTTGTC
*
22513 TTATTTAAGAGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
321 TTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
*
22578 AAATTATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
386 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
** * *
22643 GAAGATTGTTACTAGAATCAAC
451 GAAGATCATTACTAGAATCCAT
* * *
22665 GTTTGTCTCATTTGAGGTACGAACTTAAACTTTACAAAAAATGGTGGGAAAAAAGCTTTTCTTGT
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGT
* ** * ** *
22730 GAAACGAAAGCATCAATGTGATGTATCCTATTGAGAAGACAATGTTTATGGTGTCGAATCCAGAA
66 GAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAA
* *
22795 AAG-ATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTT-ATTCTATCA
131 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
*** * *
22858 AAAACGGTGGAA--AAAAGTTTTTCTAATGACCACAAAGCATCAATTTCATGTATCCTAATGAAG
196 AAAACGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATCAATTTCA--TATCATAATGAAG
* * * * * *
22921 GGAATGTGTTTTAGC-TCCAATTCTTGTAAATAATGGAGTTTGATACAAGAATCGATGCTTGTCT
259 GGAATGTGTTTTGGCTTCCAA-TCTTGTAAAGAAT-GAGATAGTTACGAGAATCGATGCTTGTCT
22985 TATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
322 TATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * *
23050 AATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAG
387 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
23115 AAGATCATTACTAGAATCCAT
452 AAGATCATTACTAGAATCCAT
* * * *
23136 GTTTGT-TGCTTTTGATGCACGAACTTAGACTTTACATAAAATGGTGGGGAAAAAAGCTTTTCTT
1 GTTTGTCT-CATTTGAGGCACGAACTTAGACTTTACAAAAAATGGT-GGGAAAAAAGCCTTTCTT
* ** ** * *
23200 GTGAAACGAAAGCATCAATATAACATATTGTAAAGAGAAGACTATGTTTATGGTGCCTTATCCTA
64 GTGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTG
* * * * *** *
23265 AAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAGGAGATAGGTTTTGATTCTAA
129 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
23330 CAAAAATGGTGGAAGGAAAAG-TTTTCTTGCGACACCAAAGCATCAATTTAATGTAACCTAATGA
194 CAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATCAATTTCA--TATCATAATGA
* * * * *
23394 AGGGAATGTGTATTGGCTTCACAATCTTGGAAAGAACTGACACAGTTACAAGAATCGATGCTTGT
257 AGGGAATGTGTTTTGGCTTC-CAATCTTGTAAAGAA-TGAGATAGTTACGAGAATCGATGCTTGT
* * * *
23459 TTTCTTTAAAGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAG
320 CTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
*
23524 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAA
385 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
*
23589 TGATGATCATTACTAGAATCCAT
450 TGAAGATCATTACTAGAATCCAT
* * * *
23612 GTTTCTCTCATTTAAGGCACGAGCTTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTG
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTG
* * * * ** *
23676 CGAAACGAAAAGCAACAATACGATGTATCCTAAAGAGAAGACAATGTTTATGTTGTGTTATGCTG
65 TGAAACG-AAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTG
23741 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
129 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * *
23806 CAGAAACGGTGGAAGGAAATGTTTTTCTTGCGACACCAAAGCATCAATTTCATAT-AT-ATAAAG
194 CAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATCAATTTCATATCATAATGAAG
* * * * *
23869 GGAATGTGTTTTGGCTTTACAATCTTGAAAAGAACTGAGGTAGTTACGAGAATTGATGGTTGTCT
259 GGAATGTGTTTTGGC-TTCCAATCTTGTAAAGAA-TGAGATAGTTACGAGAATCGATGCTTGTCT
* * * * *
23934 TATTTAGGGGATAAACTTTGAATTT-AGGGAAAATAGGGCAAAGAAATGATTTCCATGAAAAAGA
322 TATTTAAGGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
23998 AAATCATCAATTTCATTTATGCTAATGAGGGGAATGT-TTCATAGTGCCTAATCACAAAATGAAT
386 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* *
24062 GAAGATTATTACTAGAATCCAG
451 GAAGATCATTACTAGAATCCAT
* * * * ** *
24084 GTTTGTCTGATATGAGGCATGGACTTAAGACTTTACAAAAAATGGTTAG-AAAAAGCCTTTCTTA
1 GTTTGTCTCATTTGAGGCACGAACTT-AGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * *
24148 TGAAACGAAAGTATCAATATGATGTATCATAAAGAGAAAACTATGTTTATGGTGCCTTATCCTGA
65 TGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
*
24213 AAAGACTGGGGAT
130 AAAGAATGGGGAT
24226 GAAAAAAAGA
Statistics
Matches: 4189, Mismatches: 610, Indels: 176
0.84 0.12 0.04
Matches are distributed among these distances:
470 7 0.00
471 346 0.08
472 457 0.11
473 943 0.23
474 602 0.14
475 840 0.20
476 400 0.10
477 178 0.04
479 168 0.04
480 3 0.00
481 61 0.01
482 182 0.04
483 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (472 bp):
GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGT
GAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAA
AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
AAAACGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATCAATTTCATATCATAATGAAGGG
AATGTGTTTTGGCTTCCAATCTTGTAAAGAATGAGATAGTTACGAGAATCGATGCTTGTCTTATT
TAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
TCATTACTAGAATCCAT
Found at i:20732 original size:947 final size:944
Alignment explanation
Indices: 18875--24225 Score: 6616
Period size: 947 Copynumber: 5.6 Consensus size: 944
18865 AAGTTTGTCC
* * * *
18875 CATTTGAGGTACGAACTTAAACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGTGAAACGAA
1 CATTTAAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAA
* ** ** *
18940 AGCATCAATGTGATGTATCCTATTGAGAAGACAATGTTTATGGTGCCG-AATCTAGAAAAGAATG
66 AGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTG-TGTAATCTAGAAAAGAATG
* * *
19004 GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGG
130 GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAGAAACGG
*** * * *
19069 TGGAA-AAAAGTTTTTCTAATGACCCCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTG
195 TGGAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCA--TATCATAATAAAGGGAATGTG
* * * * * * *
19133 TTTTGGCTCCGATTCTTGTAAAGAATGGAGTTTGATGCAAGAATCGATGCTTGTCTTATTTAAGG
258 TTTTGGCTCC-AATCTTGAAAAGAATGGAGGTAGTTACGAGAATCGATGCTTGTCTTATTTAAGG
*
19198 GATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGCAAATCATCAA
322 GATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
19263 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGATCATT
387 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGATCATT
* * * * *
19328 ACTAGAATCCATGTTTGTTGCTTTTGCTTTTGATGCATGAACTTAGGCTTTGCATAAAATGGTGG
452 ACTAGAATCCATGTTTG-T-C---T-CTTTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGG
* * * * * * ** *
19393 GAAAAAAACCTTTTTTGTGAAACGAAAGCATCGATATAACGTATTGTAAAGAGAAGACTATGTTT
511 GAAAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAAAACTATGTTT
*
19458 ATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAGGAGA
576 ATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA-GAGA
* * *
19523 CATG-CTTTGATTCTAACAAAAATGGTGGAAGGAAAAGTTTTTCTTGCG-ACACCAATGCATCAA
640 -AAGACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAAC-CCAAAGCATCAA
* *
19586 TTTCATGTAACCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGGAAAGAACTGATACCGTT
703 TTTCATGTAACCTAATGAAGGGAATGTGTTTTGGC-TCACAATCTTGGAAAGAACTGACACTGTT
*
19651 ACGAGAATCGATGCTTGTTTTCTTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAA
767 ACGAGAATCGATGCTTGTTTTATTTAA-GGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAA
* * *
19716 AAGATTTTCACGCAAAAGAAAATCATCAATATTATTTATCCTAATGAGGAGAATGTGTTTATAGT
831 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
*
19781 GCCTAATCACAAAATGAATGATGATCATTACTAGAATCCATGTTTCTCT
896 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCT
* * * *
19830 TATTTAAGGCACGAACTTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTTTTGCGAAATGA
1 CATTTAAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTGCGAAACG-
* * *
19894 AAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGTTGTGTTATCTTGAAAAGAAT
64 AAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTGTAATCTAGAAAAGAAT
* * * *
19959 GAGGATTAGTATGAGTATTCATGTTTGTCTTAATTAAAAGACAAACTTTGATTTTATCAGAAACG
129 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAGAAACG
*
20024 GTGGAAGAAAATGTTTTTCTTGCGACCCCAAAGCATCAATTTCATAT-AT-ATAAAGGGAATGTG
194 GTGGAAGAAAA-GTTTTTCTTGCGACACCAAAGCATCAATTTCATATCATAATAAAGGGAATGTG
* * * * *
20087 TTTTGGCTTTACAATCTTGAAAAGAACT-GAGGCAGTTATGAGAATTGATGCTTGTCTTATTTAG
258 TTTTGGC--TCCAATCTTGAAAAGAA-TGGAGGTAGTTACGAGAATCGATGCTTGTCTTATTTAA
* *
20151 GGGATGAACTTTGAATTT-AGGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAATCAT
320 GGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * * * * *
20215 CAATTTCATTTATGCTAAT-AGGGGGAATG-CTTCATAGTGCCTAATCACAAAATGAATGAAGAT
384 CAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGAT
* * * ** * * * * *
20278 TATTACCAGAATCTAAATTTGTCTCATATGAGGCACGTACTGAAGACTTTACAAAAAATGGTTGG
448 CATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACT-TAGACTTTACAAAAAATGGTGGG
* * *
20343 AAAAAAGCCTTTCTTATGAAATGAAAGTATCAATATGATGTATCCTAAAGAGAAAACTATGTTTA
512 AAAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAAAACTATGTTTA
* * *
20408 TGGTGCCTTATCCTGAAAAGACTAGGGATTAGTATGAGT-TTCATGTTTGTCTTATTTGAGAGAA
577 TGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT-AGAGAA
* * * *
20472 AGAGTTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTTGCGAACCCAAAGAATCAATTT
641 AGACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAACCCAAAGCATCAATTT
* * * * * *
20537 CATGTATCCTAATGAAGGGAATGTGTTTTGGCTC-CGATTCTCGTAAAGAA-TGGAGATTGTTAC
706 CATGTAACCTAATGAAGGGAATGTGTTTTGGCTCAC-AATCTTGGAAAGAACT-GACACTGTTAC
* * *
20600 GAGAAAT-GATGCTTATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATAGGGCAAAGAAA
769 GAG-AATCGATGCTTGTTTTATTTAAGG-ATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAA
* * * *
20664 AGATTCCCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATCGTG
832 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * * *
20729 CCTAA-C-CTAAATTGAAAGAAGATCGTTACTAAAATTCATGTTTGTCT
897 CCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCT
* * * * * *
20776 CTTTTGAA-GCAGGAACTTAGATTTTACAAAAAATGGTGGG-AGAAAGCCTTTCTTGGGAAATGA
1 CATTT-AAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGA
* * * * ** *
20839 GAGCACCAATATGGTGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAAT-TCAGAAAATAAT
65 AAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTGTAATCT-AGAAAAGAAT
* *
20903 GGGGATTAGTATGAGTATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAACAGAAACG
129 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAGAAACG
* * * * *
20968 GTGGAAGGAAAATTTTTTCTTGCGACACCAAAGCATCAATTTTGTATATCCTAATGATGGGAATG
194 GTGGAA-GAAAAGTTTTTCTTGCGACACCAAAGCATCAA-TTT-CATATCATAATAAAGGGAATG
* * * * * * * *
21033 TGTTTTGTCTCCAAT-TCTCATAAAGAATGGAGATTGTTATGAGAAACGATGCTTTTGTTATTTA
256 TGTTTTGGCTCCAATCT-TGA-AAAGAATGGAGGTAGTTACGAGAATCGATGCTTGTCTTATTTA
* * ** * * *
21097 AAGGTTGAACTTTGATTTAAAGGAAAATTA-GGCGGAGAAAAGGTTTCCAAGCAAAAGAAATTCA
319 AGGGATGAACTTTGATTTAAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * *
21161 TCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAAT-CCTAATCACGAAAT-AAATGAAGA
383 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAA-GAAGA
* * * *
21224 TCGTTACTAGAATCCATGTTTATCTCTTTTGAGGCATGAACTTAGACTTTATAAAAAATGGTGGG
447 TCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGG
* * * *
21289 AAAAAAGCCTTTCTTACGAAATGAAAGCATCAATATGATGTATCCA-AATGAGAAGAA-AATGTT
512 AAAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTAT-CATAAAGAGAA-AACTATGTT
* ** * *
21352 TATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTGTTCATGTTAGTCTTATTTAAGAG
575 TATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT-AGAG
* * *
21417 AAA-ACTTTGATTCTATTAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATTAAT
639 AAAGACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAACCCAAAGCATCAAT
* ** * * * * * * *
21481 TTCCTGTAACCTAATGAAAAGATTGTGTTTTGGCTC-CGATTCTCGTG--AGGAGTGGAGATTGT
704 TTCATGTAACCTAATGAAGGGAATGTGTTTTGGCTCAC-AATCTTG-GAAAGAACT-GACACTGT
* * * * *
21543 TACGAGAATTGATGCTTGTTTTATTTAGGGAATTAACTTTGATTTAAAGGAAAAAAGGTCAAAGA
766 TACGAGAATCGATGCTTGTTTTATTTAAGG-ATGAACTTTGATTTAAAGGAAAATAGGGCAAAGA
* * * * *
21608 AAAGATTTCCGTGCAAAACAAAATCATCAATATCAATAATCCTAATGAGGAGAATGCGTTTATAG
830 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * *
21673 TGCC-AAGTGACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCT
895 TGCCTAA-TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCT
* * * * *
21723 CATTTGAGGCACGAACTTAGACCTTA-AAAAATTTGGTGGGAAAAATGCCTTTCTTGCTAAACGA
1 CATTTAAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTGCGAAACGA
* * *
21787 AAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTCATGTTGTGTTATCCT-GAAAAGAAT
65 AAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTGTAAT-CTAGAAAAGAAT
* * *
21851 GGGGATTAGTATGAGTTTTCATGTTTGTCTTATTTATGAGACAAACTTTGATTCTATCA-AAAAG
129 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAGAAACG
* * * * * *
21915 TGTGGAAGGAAAAGTTTTTCTTCCAACACCAAAGCATCAATTTCCTGTATCCTAATGAAGGAAAT
194 -GTGGAA-GAAAAGTTTTTCTTGCGACACCAAAGCATCAATTT-C-ATATCATAATAAAGGGAAT
* * * * * * *
21980 GTGTTTTGGCTCCAATTCTTGTAAAGAATAGAGATTGTTACGAGAAACAATGCTTATCTTATTTA
255 GTGTTTTGGCTCCAA-TCTTGAAAAGAATGGAGGTAGTTACGAGAATCGATGCTTGTCTTATTTA
* * *
22045 GGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAATGAAAATCAT
319 AGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
*
22110 CAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAACCACAAAATGAAAGAAGATC
384 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGATC
** *
22175 ATTACTAGAATCCATGTTTGTCAT-TTTTGAAACACGAACTTAGACTTTACAAAAAATGGTAGGA
449 ATTACTAGAATCCATGTTTGTC-TCTTTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGA
*** *
22239 AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCATAAAGAGAAGACTATGTTTAT
513 AAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAAAACTATGTTTAT
22304 GGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
578 GGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT-AGAGA-A
* * *** * *
22369 A-ACTTTGATTCTATCAAAAACGGTGGAA-AAAAAGTTTTTCTAATGACCCCAAAGCATAAATTT
641 AGACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAACCCAAAGCATCAATTT
* * *
22432 CATGTAACCTAAAGAAGGAAATGTGTTTTGGGTTCACAATCTTGGAAAGAACTGACACAT-TTAC
706 CATGTAACCTAATGAAGGGAATGTGTTTT-GGCTCACAATCTTGGAAAGAACTGACAC-TGTTAC
* * *
22496 GAGAATCGGTGTTTGTCTTATTTAAGAGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAA
769 GAGAATCGATGCTTGTTTTATTTAAG-GATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAA
*
22561 GATTTCCATGCAAAAGAAAATTATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
833 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
** * * *
22626 CTAATCACAAAATGAATGAAGATTGTTACTAGAATCAACGTTTGTCT
898 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCT
* * * * *
22673 CATTTGAGGTACGAACTTAAACTTTACAAAAAATGGTGGGAAAAAAGCTTTTCTTGTGAAACGAA
1 CATTTAAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAA
* ** ** *
22738 AGCATCAATGTGATGTATCCTATTGAGAAGACAATGTTTATGGTGTCG-AATCCAGAAAAG-ATG
66 AGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGT-GTAATCTAGAAAAGAATG
* * *
22801 GGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTT-ATTCTATCAAAAACGG
130 GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAGAAACGG
*** * *
22865 TGGAA-AAAAGTTTTTCTAATGAC-CACAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGT
195 TGGAAGAAAAGTTTTTCTTGCGACAC-CAAAGCATCAATTTCA--TATCATAATAAAGGGAATGT
* * * * * * *
22928 GTTTTAGCTCCAATTCTTGTAAATAATGGAGTTTGATACAAGAATCGATGCTTGTCTTATTTAAG
257 GTTTTGGCTCCAA-TCTTGAAAAGAATGGAGGTAGTTACGAGAATCGATGCTTGTCTTATTTAAG
22993 GGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
321 GGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
*
23058 ATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGATCAT
386 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGATCAT
* *
23123 TACTAGAATCCATGTTTGT-TGCTTTTGATGCACGAACTTAGACTTTACATAAAATGGTGGGGAA
451 TACTAGAATCCATGTTTGTCT-CTTTTGAGGCACGAACTTAGACTTTACAAAAAATGGT-GGGAA
* * * ** ** *
23187 AAAAGCTTTTCTTGTGAAACGAAAGCATCAATATAACATATTGTAAAGAGAAGACTATGTTTATG
514 AAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAAAACTATGTTTATG
* * *
23252 GTGCCTTATCCTAAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAGGAGATAG
579 GTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA-GAGAAAG
** * *
23317 GTTTTGATTCTAACAAAAATGGTGGAAGGAAAAG-TTTTCTTGCG-ACACCAAAGCATCAATTTA
643 ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAAC-CCAAAGCATCAATTTC
* * *
23380 ATGTAACCTAATGAAGGGAATGTGTATTGGCTTCACAATCTTGGAAAGAACTGACACAGTTACAA
707 ATGTAACCTAATGAAGGGAATGTGTTTTGGC-TCACAATCTTGGAAAGAACTGACACTGTTACGA
*
23445 GAATCGATGCTTGTTTTCTTTAAAGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGA
771 GAATCGATGCTTGTTTTATTT-AAGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGA
* *
23510 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCT
835 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
*
23575 AATCACAAAATGAATGATGATCATTACTAGAATCCATGTTTCTCT
900 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCT
* *
23620 CATTTAAGGCACGAGCTTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACGA
1 CATTTAAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTGCGAAACG-
* * *
23684 AAAGCAACAATACGATGTATCCTAAAGAGAAGACAATGTTTATGTTGTGTTATGCT-GAAAAGAA
64 AAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTGTAAT-CTAGAAAAGAA
23748 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAGAAAC
128 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAGAAAC
*
23813 GGTGGAAGGAAATGTTTTTCTTGCGACACCAAAGCATCAATTTCATAT-AT-ATAAAGGGAATGT
193 GGTGGAA-GAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATATCATAATAAAGGGAATGT
* * *
23876 GTTTTGGCTTTACAATCTTGAAAAGAACT-GAGGTAGTTACGAGAATTGATGGTTGTCTTATTTA
257 GTTTTGGC--TCCAATCTTGAAAAGAA-TGGAGGTAGTTACGAGAATCGATGCTTGTCTTATTTA
* * * * *
23940 GGGGATAAACTTTGAATTT-AGGGAAAATAGGGCAAAGAAATGATTTCCATGAAAAAGAAAATCA
319 AGGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * * * *
24004 TCAATTTCATTTATGCTAATGAGGGGAATGT-TTCATAGTGCCTAATCACAAAATGAATGAAGAT
383 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGAT
* * ** * * * **
24068 TATTACTAGAATCCAGGTTTGTCTGATATGAGGCATGGACTTAAGACTTTACAAAAAATGGTTAG
448 CATTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTT-AGACTTTACAAAAAATGGTGGG
*
24133 -AAAAAGCCTTTCTTATGAAACGAAAGTATCAATATGATGTATCATAAAGAGAAAACTATGTTTA
512 AAAAAAGCCTTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAAAACTATGTTTA
* *
24197 TGGTGCCTTATCCTGAAAAGACTGGGGAT
577 TGGTGCCTTATCCTAAAAAGAATGGGGAT
24226 GAAAAAAAGA
Statistics
Matches: 3795, Mismatches: 502, Indels: 206
0.84 0.11 0.05
Matches are distributed among these distances:
943 1 0.00
944 144 0.04
945 39 0.01
946 704 0.19
947 903 0.24
948 622 0.16
949 596 0.16
950 333 0.09
951 15 0.00
952 31 0.01
953 2 0.00
954 72 0.02
955 170 0.04
956 130 0.03
957 4 0.00
958 29 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (944 bp):
CATTTAAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAA
AGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGTGTAATCTAGAAAAGAATGG
GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAGAAACGGT
GGAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATATCATAATAAAGGGAATGTGTTT
TGGCTCCAATCTTGAAAAGAATGGAGGTAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
AACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGATCATTACTA
GAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCC
TTTCTTATGAAACGAAAGCATCAATATGATGTATCATAAAGAGAAAACTATGTTTATGGTGCCTT
ATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGAGAAAGACTTTGAT
TCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAACCCAAAGCATCAATTTCATGTAACCT
AATGAAGGGAATGTGTTTTGGCTCACAATCTTGGAAAGAACTGACACTGTTACGAGAATCGATGC
TTGTTTTATTTAAGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
GAATGAAGATCATTACTAGAATCCATGTTTCTCT
Found at i:22401 original size:158 final size:154
Alignment explanation
Indices: 18897--23819 Score: 474
Period size: 158 Copynumber: 31.1 Consensus size: 154
18887 GAACTTAAAC
* ** * *
18897 TTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGTGAAACGAAAGCATCAATGTGATGTATCCTA
1 TTTAC-AAAAA-GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCTA
** * * *
18962 TTGAGAAGACAATGTTTATGGTGCCGAAT-CTAGAAAAGAATGGGGATTAGTATGAGTATTCATG
64 AAGAGAAGACTATGTTTATGGTGCC-TATCCTA-AAAAGAATGGAGATTAGTATGAGTATTCATG
*
19026 TTTGTCTTATTTAAAAGACAAACTTTGA
127 TTTGTCTTATTTAAGAGACAAACTTTGA
** ** * *
19054 TTCTATCAAAAATGGTGG-AAAAAAGTTTTTCTAATG--ACCCCAAAGCATCAATTTCATGTATC
1 TT-TA-CAAAAA-GGTGGAAAAAAAGCCTTTCT--TGCAAAACGAAAGCATCAATATCATGTATC
* * * * * * ** *
19116 CTAATGA-AGGGAATGTGTTT-TGGCT-CCGATTCTTGTAAAGAATGGAG-TTTG-ATGCAAG-A
61 CTAAAGAGA-AGACTATGTTTATGG-TGCCTA-TCCTAAAAAGAATGGAGATTAGTATG--AGTA
* * * **
19175 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
121 TTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * *
19210 TTTAAAGGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAA-GCAAATCATCAATATCATTTA
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTTT-CTTGCAAAACG-AAAGCATCAATATCATGTA
* * * * * * * * * * *
19272 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAACC-ACAAAATGAAAGAAGATCATTACT-AGAA
59 TCCTAAAGAGAAGACTATGTTTATGGTGCCTATCCTA-AAAA-GAATGGAGATTAGTA-TGAGTA
* * ** * *
19335 TCCATGTTTGTTGCTTTTGCTTTTGATG-CATGAACTTAGGC
121 TTCATGTTTG-T-CTTAT--TTAAGA-GACA--AACTT-TGA
* * ** * * * **
19376 TTTGCATAAAATGGTGGGAAAAAAA-CCTTTTTTGTGAAACGAAAGCATCGATATAACGTATTGT
1 TTTACA-AAAA-GGT-GGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCT
*
19440 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
63 AAAGAGAAGACTATGTTTATGGTGCC-TATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATG
* * **
19505 TTTGTCTTACTTAGGAGACATGCTTTGA
127 TTTGTCTTATTTAAGAGACAAACTTTGA
* ** * * * * * *
19533 TTCTAACAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAATGCATCAATTTCATGTAACC
1 TT-T-ACAAAAA-GGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * * * * ** * ** * *
19598 TAATGA-AGGGAATGTGTTT-TGGCTTCACAATCTTGGAAAGAACT-GATA-CCGTTACGAG-AA
62 TAAAGAGA-AGACTATGTTTATGG-TGC-CTATCCTAAAAAGAA-TGGAGATTAG-TATGAGTAT
* * * * **
19658 TCGATGCTTGTTTTCTTTAAGGGATGAACTTTGA
122 TC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * ** ** * * *
19692 TTTAAAGGAAAATAGG-GCAAAGAAAAGATTTTCACGCAAAA-GAAAATCATCAATATTATTTAT
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATCATGTAT
* * * * * * * * *
19755 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAAT-GATGATCATTACT-AGAA
60 CCTAAAGAGAAGACTATGTTTATGGTGCCT-ATC-CTAAAAAGAATGGA-GATTAGTA-TGAGTA
* * * *
19817 TCCATGTTTCTCTTATTTAAG-GCACGAACTTAGA
121 TTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA
* * * * *
19851 CTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTTTTGCGAAATGAAAAGCACCAATA-CGATGTAT
1 -TTTACAAAAA---GGTGGAAAAAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATC-ATGTAT
* * * *
19914 CCTAAAGAGAAGACAATGTTTATGTTGTG-TTATCTTGAAAAGAAT-GAGGATTAGTATGAGTAT
60 CCTAAAGAGAAGACTATGTTTATG--GTGCCTATCCTAAAAAGAATGGA-GATTAGTATGAGTAT
* *
19977 TCATGTTTGTCTTAATTAAAAGACAAACTTTGA
122 TCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * ** * ** * * * *
20010 TTTTATCAGAAACGGTGGAAGAAAATGTTTTTCTTGCGACCCCAAAGCATCAATTTCATATAT-A
1 -TTTA-CA-AAAAGGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * ** * * * ** *
20074 TAAAG-G--GAATGTGTTT-TGGCTTTACAATCTTGAAAAGAACT-GAG-GCAGTTATGAGAATT
62 TAAAGAGAAGACTATGTTTATGG--TGCCTATCCTAAAAAGAA-TGGAGATTAG-TATGAGTATT
* * * * **
20133 GATGCTTGTCTTATTTAGGGGATGAACTTTGAA
123 CATGTTTGTCTTATTTAAGAGACAAACTTTG-A
* * * * * * * *
20166 TTTAGGGAAAATAGG-GCAAAGAAATG-ATTTCCATGCAAAA-GAAAATCATCAATTTCATTTAT
1 TTTA--CAAAA-AGGTGGAAA-AAAAGCCTTT-CTTGCAAAACG-AAAGCATCAATATCATGTAT
* ** * * * * * **
20228 GCTAATAG-GGGGA--ATGCTTCATAGTGCCTAATCAC-AAAATGAATGAAGATTATTACCAG-A
60 CCTAA-AGAGAAGACTATG-TTTATGGTGCCT-ATC-CTAAAAAGAATGGAGATTAGTATGAGTA
* ** * * * ** **
20288 ATCTAAATTTGTCTCATATGAG-GCACGTACTGAAGA
121 TTC-ATGTTTGTCTTATTTAAGAG-ACAAACT-TTGA
*** * * *
20324 CTTTACAAAAAATGGTTGG-AAAAAAGCCTTTCTTATGAAATGAAAGTATCAATATGATGTATCC
1 -TTTAC-AAAAA-GG-TGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * *
20388 TAAAGAGAAAACTATGTTTATGGTGCCTTATCCTGAAAAGACTAGG-GATTAGTATGAGT-TTCA
62 TAAAGAGAAGACTATGTTTATGGTGCC-TATCCTAAAAAGAAT-GGAGATTAGTATGAGTATTCA
* *
20451 TGTTTGTCTTATTTGAGAGA-AAGAGTTTGA
125 TGTTTGTCTTATTTAAGAGACAA-ACTTTGA
* * ** * * * * *
20481 TTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTTGCGAACCCAAAGAATCAATTTCATGTATCC
1 TT-TA-CAAAAA-GGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * * * ** * * *
20546 TAATGA-AGGGAATGTGTTT-TGGCT-CCGATTCTCGTAAAGAATGGAGATT-GTTACGAGAAAT
62 TAAAGAGA-AGACTATGTTTATGG-TGCCTATCCT-AAAAAGAATGGAGATTAG-TATGAGTATT
* * * ** *
20607 GATGCTTATCTTATTTAAG-GTATGAACATTGA
123 CATGTTTGTCTTATTTAAGAG-ACAAACTTTGA
* * * * * * * *
20639 TTTAAAGGAAAATAGG-GCAAAGAAAAG-ATTCCCATACAAAA-GAAAATCATCAATATCATTTA
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTT-TCTTGCAAAACG-AAAGCATCAATATCATGTA
* ** * * * * ** * * * **
20701 TCCTAATGAGGTGAATGTGTTTATCGTGCCTAACCTAAATTGAAAGAAGA-TCGTTACT-AAAAT
59 TCCTAAAGAGAAGACTATGTTTATGGTGCCTATCCTAAAAAGAATGGAGATTAG-TA-TGAGTAT
* *
20764 TCATGTTTGTCTCT-TTTGAAGCAG--GAACTTAGA
122 TCATGTTTGTCT-TATTT-AAG-AGACAAACTTTGA
* * ** * * * **
20797 TTTTACAAAAAATGGTGG-GAGAAAGCCTTTCTTGGGAAATGAGAGCACCAATATGGTGTATCCT
1 -TTTAC-AAAAA-GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCT
* * * *
20861 AAAGAGAAGACTATGTTTATGGTGCCTAATTC-AGAAAATAATGGGGATTAGTATGAGTATCCAT
63 AAAGAGAAGACTATGTTTATGGTGCCT-ATCCTA-AAAAGAATGGAGATTAGTATGAGTATTCAT
20925 GTTTGTCTTATTTAAGAGACAAACTTTGA
126 GTTTGTCTTATTTAAGAGACAAACTTTGA
* * *** * * * * ** *
20954 TTCTAACAGAAACGGTGGAAGGAAAATTTTTTCTTGCGACACCAAAGCATCAATTTTGTATATCC
1 TT-T-ACA-AAAAGGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * * * * * **
21019 TAATGATG-GGAATGTGTTT-T-GTCTCCAATTCTCATAAAGAATGGAGATT-GTTATGAG-AAA
62 TAAAGA-GAAGACTATGTTTATGGT-GCCTATCCT-AAAAAGAATGGAGATTAG-TATGAGTATT
* ***
21079 CGATGCTTT-TGTTATTTAA-AGGTTGAACTTTGA
123 C-ATG-TTTGTCTTATTTAAGA-GACAAACTTTGA
* * * * ** * *
21112 TTTAAAGGAAAATTAGGCGG-AGAAAAG-GTTTCCAAGCAAAA-GAAATTCATCAATATCATTTA
1 TTT--A-CAAAA--AGGTGGAAAAAAAGCCTTT-CTTGCAAAACGAAA-GCATCAATATCATGTA
* * * * * ** * * * * *
21174 TCTTAATGAGGAGAATGTGTTTATAAT-CCTAATCACGAAATA-AATGAAGA-TCGTTACT-AGA
59 TCCTAAAGAGAAGACTATGTTTATGGTGCCT-ATC-CTAAAAAGAATGGAGATTAG-TA-TGAGT
* * * *
21235 ATCCATGTTTATCTCT-TTT--GAGGCATGAACTTAGA
120 ATTCATGTTTGTCT-TATTTAAGAGACA--AACTTTGA
* * * * * *
21270 CTTTATAAAAAATGGTGGGAAAAAAGCCTTTCTTACGAAATGAAAGCATCAATATGATGTATCC-
1 -TTTA-CAAAAA-GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCT
** ** * *
21334 AAATGAGAAGAAAATGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTGTTCAT
63 AAA-GAGAAGACTATGTTTATGGTGCCT-ATCCTAAAAAGAATGGAGATTAGTATGAGTATTCAT
*
21399 GTTAGTCTTATTTAAGAGA-AAACTTTGA
126 GTTTGTCTTATTTAAGAGACAAACTTTGA
* * ** * ** * * * * *
21427 TTCTATTAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACCCCAAAGCATTAATTTCCTGTAACC
1 TT-TA-CAAAAA-GGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * * * *** * * * * *
21492 TAATGAAAAGATTGTGTTT-TGGCT-CCGATTCTCGTGAGGAGTGGAGATT-GTTACGAGAATTG
62 TAAAGAGAAGACTATGTTTATGG-TGCCTATCCT-AAAAAGAATGGAGATTAG-TATGAGTATTC
* * *
21554 ATGCTTGTTTTATTT-AGGGA-ATTAACTTTGA
124 ATGTTTGTCTTATTTAAGAGACA--AACTTTGA
* * * * * * *
21585 TTTAAAGGAAAAAAGGT-CAAAGAAAAG-ATTTCCGTGCAAAACAAAATCATCAATATCAAT-AA
1 TTT--A--CAAAAAGGTGGAAA-AAAAGCCTTT-CTTGCAAAACGAAAGCATCAATATC-ATGTA
* * * ** * * * * * * * *
21647 TCCTAATGAGGAGAATGCGTTTATAGTGCCAAGTGAC-AAAATGAATGAAGATCATTACT-AGAA
59 TCCTAAAGAGAAGACTATGTTTATGGTGCCTA-T-CCTAAAAAGAATGGAGATTAGTA-TGAGTA
* * * * * *
21710 TCCACGTTTGTCTCATTTGAG-GCACGAACTTAGA
121 TTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA
* * * * *
21744 CCTTA-AAAAATTTGGTGGGAAAAATGCCTTTCTTGCTAAACGAAAGCACCAATA-CGATGTATC
1 -TTTACAAAAA---GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATC-ATGTATC
* * * * * *
21807 CTAAAGAGAAGACAATGTTCATGTTGTG-TTATCCTGAAAAGAATGGGGATTAGTATGAGTTTTC
61 CTAAAGAGAAGACTATGTTTATG--GTGCCTATCCTAAAAAGAATGGAGATTAGTATGAGTATTC
*
21871 ATGTTTGTCTTATTTATGAGACAAACTTTGA
124 ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* ** * * * * *
21902 TTCTATCAAAAAGTGTGGAAGGAAAAGTTTTTCTTCCAACACCAAAGCATCAATTTCCTGTATCC
1 TT-TA-CAAAAAG-GTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * ** * * *
21967 TAATGAAGGAA-A-TGTGTTT-TGGCT-CCAATTCTTGTAAAGAATAGAGATT-GTTACGAG-AA
62 TAAAG-A-GAAGACTATGTTTATGG-TGCCTA-TCCTAAAAAGAATGGAGATTAG-TATGAGTAT
* * * * * **
22026 ACAATGCTTATCTTATTTAGGGGATGAACTTTGA
122 TC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * ** * * * *
22060 TTTAAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGC-AAATGAAAATCATCAATATCATTTAT
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATCATGTAT
* * * ** * * * * * * *
22123 CCTAATGAGGAGAATGCGTTTATAGTGCCTAACC-ACAAAATGAAAGAAGATCATTACT-AGAAT
60 CCTAAAGAGAAGACTATGTTTATGGTGCCTATCCTA-AAAA-GAATGGAGATTAGTA-TGAGTAT
* * * *
22186 CCATGTTTGTCATT-TTTGAA-ACACGAACTTAGA
122 TCATGTTTGTC-TTATTT-AAGAGACAAACTTTGA
* *
22219 CTTTACAAAAAATGGTAGG-AAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCA
1 -TTTAC-AAAAA-GGT-GGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
*
22283 TAAAGAGAAGACTATGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCAT
62 TAAAGAGAAGACTATGTTTATGGTGCC-TATCCTAAAAAGAATGGAGATTAGTATGAGTATTCAT
22348 GTTTGTCTTATTTAAGAGACAAACTTTGA
126 GTTTGTCTTATTTAAGAGACAAACTTTGA
** ** * * * *
22377 TTCTATCAAAAACGGTGGAAAAAAAGTTTTTCTAATG--ACCCCAAAGCATAAATTTCATGTAAC
1 TT-TA-CAAAAA-GGTGGAAAAAAAGCCTTTCT--TGCAAAACGAAAGCATCAATATCATGTATC
* * * * ** * * *
22440 CTAAAGAAGGAA-A-TGTGTTT-TGGGTTCACAATCTTGGAAAGAACTGACACATT--TACGAG-
61 CTAAAG-A-GAAGACTATGTTTAT-GGTGC-CTATCCTAAAAAGAA-TG-GAGATTAGTATGAGT
* * **
22499 AATCGGTGTTTGTCTTATTTAAGAGATGAACTTTGA
120 ATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * ** *
22535 TTTAAAGGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAA-GAAAATTATCAATATCATTTA
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTTT-CTTGCAAAACG-AAAGCATCAATATCATGTA
* * * * * * *
22597 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATT-GTTACT-AG-
59 TCCTAAAGAGAAGACTATGTTTATGGTGCCT-ATC-CTAAAAAGAATGGAGATTAG-TA-TGAGT
* * * * * **
22658 AATCAACGTTTGTCTCATTTGAG-GTACGAACTTAAA
120 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGA
* * ** * *
22694 CTTTACAAAAAATGGTGGGAAAAAAGCTTTTCTTGTGAAACGAAAGCATCAATGTGATGTATCCT
1 -TTTAC-AAAAA-GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCT
** * ** * *
22759 ATTGAGAAGACAATGTTTATGGTGTCGAATCC-AGAAAAG-ATGGGGATTAGCATGAGTATTCAT
63 AAAGAGAAGACTATGTTTATGGTG-CCTATCCTA-AAAAGAATGGAGATTAGTATGAGTATTCAT
*
22822 GTTTGTCTTATTTAAGAGATAAACTTT-A
126 GTTTGTCTTATTTAAGAGACAAACTTTGA
** ** *
22850 TTCTATCAAAAACGGTGG-AAAAAAGTTTTTCTAATG-ACCAC-AAAGCATCAATTTCATGTATC
1 TT-TA-CAAAAA-GGTGGAAAAAAAGCCTTTCT--TGCAAAACGAAAGCATCAATATCATGTATC
* * * * * * * ** * * ** *
22912 CTAATGA-AGGGAATGTGTTT-TAGCT-CCAATTCTTGTAAATAATGGAG-TTTGATACAAG-AA
61 CTAAAGAGA-AGACTATGTTTAT-GGTGCCTA-TCCTAAAAAGAATGGAGATTAG-TATGAGTAT
* * **
22972 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
122 TC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * *
23006 TTTAAAGGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAA-GAAAATCATCAATATCATTTA
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTTT-CTTGCAAAACG-AAAGCATCAATATCATGTA
* * * * * * * * * *
23068 TCCTAATA-AGGAGAATGTGTTTATAGTGCCTAACC-ACAAAATGAAAGAAGATCATTACT-AGA
59 TCCTAA-AGAGAAGACTATGTTTATGGTGCCTATCCTA-AAAA-GAATGGAGATTAGTA-TGAGT
* * * * * *
23130 ATCCATGTTTGTTGCTT-TTGATG-CACGAACTTAGA
120 ATTCATGTTTG-T-CTTATTTAAGAGACAAACTTTGA
* * ** * ** **
23165 CTTTACATAAAATGGTGGGGAAAAAAGCTTTTCTTGTGAAACGAAAGCATCAATATAACATATTG
1 -TTTACA-AAAA-GGT-GGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* *
23230 TAAAGAGAAGACTATGTTTATGGTGCCTTATCCTAAAAAAAATGGGGATTAGTATGAGTATTCAT
62 TAAAGAGAAGACTATGTTTATGGTGCC-TATCCTAAAAAGAATGGAGATTAGTATGAGTATTCAT
* * * ***
23295 GTTTGTCTTACTTAGGAGATAGGTTTTGA
126 GTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * * * *
23324 TTCTAACAAAAATGGTGGAAGGAAAAG-TTTTCTTGCGACACCAAAGCATCAATTTAATGTAACC
1 TT-T-ACAAAAA-GGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCC
* * * * * * ** * * **
23388 TAATGA-AGGGA--ATGTGTATTGGCTTCACAATCTTGGAAAGAACT-GACA-CAGTTACAAG-A
62 TAAAGAGA-AGACTATGTTTA-TGG-TGC-CTATCCTAAAAAGAA-TGGAGATTAG-TATGAGTA
* * * * **
23447 ATCGATGCTTGTTTTCTTTAA-AGGATGAACTTTGA
121 TTC-ATGTTTGTCTTATTTAAGA-GACAAACTTTGA
* * ** * * *
23482 TTTAAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAA-GAAAATCATCAATATCATTTAT
1 TTT--A-CAAAA-AGGTGGAAA-AAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATCATGTAT
* * * ** * * * * *
23545 CCTAATGAGGAGAATGCGTTTATAGTGCCTAATCAC-AAAATGAAT-GATGATCATTACT-AGAA
60 CCTAAAGAGAAGACTATGTTTATGGTGCCT-ATC-CTAAAAAGAATGGA-GATTAGTA-TGAGTA
* * * * * *
23607 TCCATGTTTCTCTCATTTAAG-GCACGAGCTTAGA
121 TTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA
* * *
23641 CTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAAGCAACAATA-CGATGTAT
1 -TTTACAAAAA---GGTGGAAAAAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATC-ATGTAT
* * * * *
23704 CCTAAAGAGAAGACAATGTTTATGTTGTG-TTATGCTGAAAAGAATGGGGATTAGTATGAGTATT
60 CCTAAAGAGAAGACTATGTTTATG--GTGCCTATCCTAAAAAGAATGGAGATTAGTATGAGTATT
23768 CATGTTTGTCTTATTTAAGAGACAAACTTTGA
123 CATGTTTGTCTTATTTAAGAGACAAACTTTGA
*
23800 TTCTATCAGAAACGGTGGAA
1 TT-TA-CA-AAAAGGTGGAA
23820 GGAAATGTTT
Statistics
Matches: 3334, Mismatches: 1013, Indels: 836
0.64 0.20 0.16
Matches are distributed among these distances:
152 1 0.00
153 3 0.00
154 25 0.01
155 193 0.06
156 185 0.06
157 418 0.13
158 1254 0.38
159 962 0.29
160 149 0.04
161 27 0.01
162 10 0.00
163 7 0.00
164 70 0.02
165 21 0.01
166 9 0.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (154 bp):
TTTACAAAAAGGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCTAAA
GAGAAGACTATGTTTATGGTGCCTATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTG
TCTTATTTAAGAGACAAACTTTGA
Found at i:27558 original size:22 final size:22
Alignment explanation
Indices: 27510--27571 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
27500 ACCAATTTTC
*
27510 AAGGGGGAGAAAA--GTTT-TT
1 AAGGGGGAGAAAATCTTTTATT
*
27529 AAGAGGGAGAAAATCTTTTATT
1 AAGGGGGAGAAAATCTTTTATT
*
27551 AAGGGGGAAAAAATCTCTTTA
1 AAGGGGGAGAAAATCT-TTTA
27572 ACCGATTTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 12 0.34
21 3 0.09
22 16 0.46
23 4 0.11
ACGTcount: A:0.40, C:0.05, G:0.27, T:0.27
Consensus pattern (22 bp):
AAGGGGGAGAAAATCTTTTATT
Found at i:27564 original size:72 final size:72
Alignment explanation
Indices: 27480--27771 Score: 427
Period size: 72 Copynumber: 4.1 Consensus size: 72
27470 ATTTATATCT
*
27480 AGGGGGAGAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
1 AGGGGGAAAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
27545 TTTATTA
66 TTTATTA
* * *
27552 AGGGGGAAAAAATCTCTTTAACCGATTTTCAAGGGGGAGAAATATTGTTTTGAA-A---A-TAAA
1 AGGGGGAAAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAA-A--GTTTTTAAGAGGGAGAAAA
*
27612 T-TTATATCT-
63 TCTTTTAT-TA
*
27621 AGGGGGAGAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
1 AGGGGGAAAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
27686 TTTATTA
66 TTTATTA
*
27693 AGGGGGAAAAAATCTCTTTAACCGATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
1 AGGGGGAAAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
*
27758 TTTATCA
66 TTTATTA
27765 AGGGGGA
1 AGGGGGA
27772 GAAATTTTTA
Statistics
Matches: 196, Mismatches: 13, Indels: 22
0.85 0.06 0.10
Matches are distributed among these distances:
66 7 0.04
67 1 0.01
68 1 0.01
69 45 0.23
70 6 0.03
71 6 0.03
72 121 0.62
73 1 0.01
74 1 0.01
75 7 0.04
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (72 bp):
AGGGGGAAAAAATCTCTTTAACCAATTTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCT
TTTATTA
Found at i:27695 original size:141 final size:141
Alignment explanation
Indices: 27441--27734 Score: 588
Period size: 141 Copynumber: 2.1 Consensus size: 141
27431 CTATAACAAA
27441 AAGGGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAAT
1 AAGGGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAAT
27506 TTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAATCTCTTT
66 TTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAATCTCTTT
27571 AACCGATTTTC
131 AACCGATTTTC
27582 AAGGGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAAT
1 AAGGGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAAT
27647 TTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAATCTCTTT
66 TTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAATCTCTTT
27712 AACCGATTTTC
131 AACCGATTTTC
27723 AAGGGGGAGAAA
1 AAGGGGGAGAAA
27735 AGTTTTTAAG
Statistics
Matches: 153, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 153 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (141 bp):
AAGGGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAAT
TTTCAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAATCTCTTT
AACCGATTTTC
Found at i:27699 original size:22 final size:22
Alignment explanation
Indices: 27651--27712 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
27641 ACCAATTTTC
*
27651 AAGGGGGAGAAAA--GTTT-TT
1 AAGGGGGAGAAAATCTTTTATT
*
27670 AAGAGGGAGAAAATCTTTTATT
1 AAGGGGGAGAAAATCTTTTATT
*
27692 AAGGGGGAAAAAATCTCTTTA
1 AAGGGGGAGAAAATCT-TTTA
27713 ACCGATTTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 12 0.34
21 3 0.09
22 16 0.46
23 4 0.11
ACGTcount: A:0.40, C:0.05, G:0.27, T:0.27
Consensus pattern (22 bp):
AAGGGGGAGAAAATCTTTTATT
Found at i:27760 original size:20 final size:21
Alignment explanation
Indices: 27727--27796 Score: 83
Period size: 20 Copynumber: 3.4 Consensus size: 21
27717 ATTTTCAAGG
*
27727 GGGAGAAAAGTTTT-T-AAGA
1 GGGAGAAAATTTTTATAAAGA
* *
27746 GGGAGAAAATCTTTTATCAAGG
1 GGGAGAAAAT-TTTTATAAAGA
27768 GGGAG-AAATTTTTATAAAGA
1 GGGAGAAAATTTTTATAAAGA
27788 GGGAGAAAA
1 GGGAGAAAA
27797 ATGAAAACTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
19 9 0.21
20 18 0.42
21 8 0.19
22 8 0.19
ACGTcount: A:0.43, C:0.03, G:0.30, T:0.24
Consensus pattern (21 bp):
GGGAGAAAATTTTTATAAAGA
Found at i:28350 original size:13 final size:13
Alignment explanation
Indices: 28332--28358 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
28322 ACATTATGCT
28332 TTGTATCGATACA
1 TTGTATCGATACA
28345 TTGTATCGATACA
1 TTGTATCGATACA
28358 T
1 T
28359 GGTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:28367 original size:19 final size:19
Alignment explanation
Indices: 28342--28398 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
28332 TTGTATCGAT
28342 ACATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
* * *
28361 TCATTGTATCGATAAATAG
1 ACATTGTATCGATACATGG
28380 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
28399 AAACTGGCAG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:31484 original size:165 final size:164
Alignment explanation
Indices: 31273--31654 Score: 398
Period size: 165 Copynumber: 2.3 Consensus size: 164
31263 CACAATGTTA
* * *
31273 GATGATTTTTTAAAATTTTAAACCT-AGAAAAATCCTCCCAAAAATATTTATAAGATAG-AAAAC
1 GATGAATTTTAAAAATTTTAAA-CTAAGAAAAATCC-CCCGAAAATATTTATAAGATAGAAAAAC
31336 TCGGTTT-TCCAAAAAGAGGAAAATTTTAAAGAAAAAATGAAAAACTAATGAAAATAAATA-AAA
64 T--GTTTATCCAAAAAGAGGAAAA-TTTAAAGAAAAAATGAAAAACTAATG-AAATAAA-AGAAA
* * *
31399 TTTTC-AAA-CTGATTTAATCTAAATTAAATGATGATATTT
124 TTTTCAAAATCTGAATTAATATAAATTAAATGATAATATTT
* * * *
31438 GATGAATTTTAAAAATTATAAACTAAGAAAAAGCGCCCCGAAAATATTTATAGGGTAGAAAAACT
1 GATGAATTTTAAAAATTTTAAACTAAGAAAAATC-CCCCGAAAATATTTATAAGATAGAAAAACT
* * * * * * * *
31503 TTTTAATTCAAAAATAGGAAAATTTCAAGGAAAAATGAAAAATTCATGAAATAAAAGGAATTTTT
65 GTTT-ATCCAAAAAGAGGAAAATTTAAAGAAAAAATGAAAAACTAATGAAATAAAA-GAAATTTT
* * *
31568 CAAAATCTGAATTAATATTAGTTGAATGATAATATTT
128 CAAAATCTGAATTAATATAAATTAAATGATAATATTT
* * * *
31605 GATGAATTTTAAAATTTTTAAACAAAGAAAAATCTCTCCGAAAACATTTA
1 GATGAATTTTAAAAATTTTAAACTAAGAAAAATC-CCCCGAAAATATTTA
31655 CGAAAAAGAA
Statistics
Matches: 180, Mismatches: 28, Indels: 16
0.80 0.12 0.07
Matches are distributed among these distances:
163 1 0.01
164 12 0.07
165 75 0.42
166 24 0.13
167 68 0.38
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (164 bp):
GATGAATTTTAAAAATTTTAAACTAAGAAAAATCCCCCGAAAATATTTATAAGATAGAAAAACTG
TTTATCCAAAAAGAGGAAAATTTAAAGAAAAAATGAAAAACTAATGAAATAAAAGAAATTTTCAA
AATCTGAATTAATATAAATTAAATGATAATATTT
Done.