Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold687
Parameters: 2 7 7 80 10 50 1000
Length:  31953

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3630--3938
50
6.2
50
92
4
471
29
21
17
32
1.96
3630--3938
150
2.1
151
93
0
530
29
21
17
32
1.96
8328--8586
50
5.2
50
94
0
448
28
21
19
30
1.98
10062--10136
38
2.0
38
84
10
100
50
0
0
49
1.00
10528--10562
17
1.9
17
88
11
52
82
0
11
5
0.82
11450--11474
1
25.0
1
100
0
50
0
100
0
0
0.00
13239--13286
14
3.4
14
75
18
55
43
0
2
54
1.12
13822--13877
26
2.4
22
80
19
60
39
1
0
58
1.08
14162--14203
22
2.0
21
82
13
52
71
2
0
26
0.98
17801--17825
12
2.1
12
100
0
50
32
8
0
60
1.26
18906--18967
31
1.9
33
87
6
92
58
0
0
41
0.98
19713--19745
6
5.7
6
92
7
59
84
0
15
0
0.61
19713--19745
11
2.8
12
90
9
59
84
0
15
0
0.61
20448--20708
145
1.8
145
88
1
407
30
16
21
31
1.96
20700--20742
13
3.2
13
76
3
50
46
2
4
46
1.36
20993--21163
91
1.9
91
95
0
306
21
22
28
28
1.99
25592--25634
2
21.5
2
100
0
86
51
0
0
48
1.00
25664--25743
37
2.2
35
84
8
99
48
0
0
51
1.00
25703--25744
23
1.9
21
81
18
50
52
0
0
47
1.00
25903--25950
22
2.3
21
82
10
62
54
0
2
43
1.12
25925--25966
19
2.3
19
83
4
59
59
0
0
40
0.97
27247--27307
10
5.9
10
72
12
52
42
0
6
50
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29552--29590
19
2.0
20
90
5
62
51
0
0
48
1.00
30435--30486
18
2.5
22
74
25
60
53
0
0
46
1.00
30449--30500
17
3.0
16
81
13
59
51
0
0
48
1.00
30492--30530
21
1.9
20
84
5
51
66
2
0
30
1.05
30474--30538
23
2.9
23
70
21
57
60
1
0
38
1.07
30759--30792
11
3.2
11
91
4
52
55
0
0
44
0.99
30750--30860
40
2.8
39
73
11
109
53
0
0
45
1.06
30762--30904
40
3.5
40
73
13
105
55
1
0
42
1.13

Tables:   1

The End!