Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold69
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2104606
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.31
Warning! 151874 characters in sequence are not A, C, G, or T
File 1 of 13
Found at i:2026 original size:23 final size:22
Alignment explanation
Indices: 1985--2027 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
1975 TATTGCATTA
*
1985 GAATGAATAAATGAATTAAAAG
1 GAATGAAGAAATGAATTAAAAG
*
2007 GAATGAAGGAAATGACTTAAA
1 GAATGAA-GAAATGAATTAAA
2028 TGAAGAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.56, C:0.02, G:0.21, T:0.21
Consensus pattern (22 bp):
GAATGAAGAAATGAATTAAAAG
Found at i:11088 original size:62 final size:62
Alignment explanation
Indices: 11015--11134 Score: 177
Period size: 62 Copynumber: 1.9 Consensus size: 62
11005 TAGCCCAACG
** *
11015 TAGTTTCGAAAACTTGGTTCATTTTAGACCTTGATAACTTCAAAATGTAATAAAACTACTGC
1 TAGTTTCGAAAACTTGGTTCATTGGAGACCTTGATAACCTCAAAATGTAATAAAACTACTGC
* * * *
11077 TAGTTTTGAAAACTTGGTTCCTTGGAGACCTTGATGACCTCAAAATGTTATAAAACTA
1 TAGTTTCGAAAACTTGGTTCATTGGAGACCTTGATAACCTCAAAATGTAATAAAACTA
11135 GTGCCATTAG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 51 1.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (62 bp):
TAGTTTCGAAAACTTGGTTCATTGGAGACCTTGATAACCTCAAAATGTAATAAAACTACTGC
Found at i:12056 original size:104 final size:106
Alignment explanation
Indices: 11864--12070 Score: 314
Period size: 104 Copynumber: 2.0 Consensus size: 106
11854 GTCGAGTTGG
*
11864 TTTTGATTCAGGTTGATTGGGGTTAGGTCATTTCAGCTATTTAGATTTTTTATTCATTTTTAGGT
1 TTTTGATTCAGGTTAATTGGGGTTAGGTCATTTCAGCTATTTAGATTTTTTATTCATTTTTAGGT
***
11929 TTAGGTCATTTTGGCTTCAGGTCACTTCAGAATCAAGTAAC
66 TTAGGTCATTTCAACTTCAGGTCACTTCAGAATCAAGTAAC
11970 TTTTGATTCAGGTTAATT-GGGTTAGGTCATTTC-GACT-TCTTAGATTTTTTA-TCATTTTTAG
1 TTTTGATTCAGGTTAATTGGGGTTAGGTCATTTCAG-CTAT-TTAGATTTTTTATTCATTTTTAG
* *
12031 GTTTAGGTTATTTCAACTTCGGGTCACTTCAGAATCAAGT
64 GTTTAGGTCATTTCAACTTCAGGTCACTTCAGAATCAAGT
12071 CATTTCAGTT
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
104 47 0.51
105 29 0.31
106 17 0.18
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.46
Consensus pattern (106 bp):
TTTTGATTCAGGTTAATTGGGGTTAGGTCATTTCAGCTATTTAGATTTTTTATTCATTTTTAGGT
TTAGGTCATTTCAACTTCAGGTCACTTCAGAATCAAGTAAC
Found at i:14071 original size:15 final size:16
Alignment explanation
Indices: 14051--14083 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14041 GCATGATTCT
14051 TATGCAT-AAATATTA
1 TATGCATGAAATATTA
14066 TATGCATGGAAATATTA
1 TATGCAT-GAAATATTA
14083 T
1 T
14084 GTAAGCTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (16 bp):
TATGCATGAAATATTA
Found at i:14392 original size:31 final size:31
Alignment explanation
Indices: 14354--14471 Score: 128
Period size: 31 Copynumber: 3.6 Consensus size: 31
14344 TATCTTTTGA
*
14354 AGGCTAAGATAGAGCCTCTCTATTTTTTCAC
1 AGGCTAAGATAGAACCTCTCTATTTTTTCAC
* *
14385 AGGCTAAGATAGAACCTCCCTATCTTTTCAC
1 AGGCTAAGATAGAACCTCTCTATTTTTTCAC
* * *
14416 AGGTTAAGATAAAACCTTTCTCCCTATCTTTTTCAA
1 AGGCTAAGATAGAACC--TCT--CTAT-TTTTTCAC
*
14452 AAGCTAAGATAGAACCTCTC
1 AGGCTAAGATAGAACCTCTC
14472 AATCACTTCG
Statistics
Matches: 71, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
31 42 0.59
32 1 0.01
33 2 0.03
34 3 0.04
35 4 0.06
36 19 0.27
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.32
Consensus pattern (31 bp):
AGGCTAAGATAGAACCTCTCTATTTTTTCAC
Found at i:14460 original size:36 final size:35
Alignment explanation
Indices: 14400--14468 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
14390 AAGATAGAAC
* * *
14400 CTCCCTATCTTTTCACAGGTTAAGATAAAACCTTT
1 CTCCCTATCTTTTCAAAAGCTAAGATAAAACCTTT
*
14435 CTCCCTATCTTTTTCAAAAGCTAAGATAGAACCT
1 CTCCCTATC-TTTTCAAAAGCTAAGATAAAACCT
14469 CTCAATCACT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 9 0.31
36 20 0.69
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (35 bp):
CTCCCTATCTTTTCAAAAGCTAAGATAAAACCTTT
Found at i:14847 original size:20 final size:20
Alignment explanation
Indices: 14822--14881 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
14812 CCATTGGACT
*
14822 TAATGTATCAATACAATTCA
1 TAATGTATCGATACAATTCA
14842 TAATGTATCGATACAATTCA
1 TAATGTATCGATACAATTCA
14862 TAATGTATCGATACAATTCA
1 TAATGTATCGATACAATTCA
14882 ATATAGCCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (20 bp):
TAATGTATCGATACAATTCA
Found at i:15024 original size:32 final size:33
Alignment explanation
Indices: 14983--15047 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
14973 CATTTCATGG
*
14983 TGTATCGATACAAAG-AACATGTATTGATACAT
1 TGTATCGATACAAAGCAACATGTATCGATACAT
* *
15015 TGTATCGATACTAAGCAATATGTATCGATACAT
1 TGTATCGATACAAAGCAACATGTATCGATACAT
15048 CTGGGTGTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (33 bp):
TGTATCGATACAAAGCAACATGTATCGATACAT
Found at i:15701 original size:28 final size:30
Alignment explanation
Indices: 15662--15723 Score: 110
Period size: 29 Copynumber: 2.1 Consensus size: 30
15652 TCCCCCTTAA
15662 TGAAAGATTTTCTATTTCTCCC-TTTTGTG
1 TGAAAGATTTTCTATTTCTCCCATTTTGTG
15691 TGAAAGA-TTTCTATTTCTCCCATTTTGTG
1 TGAAAGATTTTCTATTTCTCCCATTTTGTG
15720 TGAA
1 TGAA
15724 TTTACCTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 14 0.44
29 18 0.56
ACGTcount: A:0.21, C:0.16, G:0.15, T:0.48
Consensus pattern (30 bp):
TGAAAGATTTTCTATTTCTCCCATTTTGTG
Found at i:15735 original size:29 final size:27
Alignment explanation
Indices: 15665--15723 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 27
15655 CCCTTAATGA
15665 AAGATTTTCTATTTCTCCCTTTTGTGTG
1 AAGA-TTTCTATTTCTCCCTTTTGTGTG
15693 AAAGATTTCTATTTCTCCCATTTTGTGTG
1 -AAGATTTCTATTTCTCCC-TTTTGTGTG
15722 AA
1 AA
15724 TTTACCTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
28 16 0.55
29 13 0.45
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (27 bp):
AAGATTTCTATTTCTCCCTTTTGTGTG
Found at i:21149 original size:20 final size:20
Alignment explanation
Indices: 21124--21161 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
21114 CCGTTGGACT
21124 TAATGTATCGATACAATTCA
1 TAATGTATCGATACAATTCA
21144 TAATGTATCGATACAATT
1 TAATGTATCGATACAATT
21162 ATAGCCGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (20 bp):
TAATGTATCGATACAATTCA
Found at i:21178 original size:52 final size:52
Alignment explanation
Indices: 21106--21213 Score: 155
Period size: 52 Copynumber: 2.1 Consensus size: 52
21096 ATACATTTGA
* * *
21106 AATTCTAGCCGTTGGACTTAATGTATCGATACAATTCATAATGTATCGATAC
1 AATTATAGCCGTTGGACTTAATGTATCGATACAATTCACAATGTATCAATAC
* *
21158 AATTATAGCCGTTGCG-CTTAATGTATCGATACAATTTACCATGTATCAATAC
1 AATTATAGCCGTTG-GACTTAATGTATCGATACAATTCACAATGTATCAATAC
21210 AATT
1 AATT
21214 CACTTAGGGT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
52 49 0.98
53 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (52 bp):
AATTATAGCCGTTGGACTTAATGTATCGATACAATTCACAATGTATCAATAC
Found at i:21321 original size:33 final size:32
Alignment explanation
Indices: 21261--21324 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
21251 CATTTCATGG
21261 TGTATCGATACAAAGAACATGTATCGATACAT
1 TGTATCGATACAAAGAACATGTATCGATACAT
* *
21293 TGTATCGATACTAAGCAATATGTATCGATACA
1 TGTATCGATACAAAG-AACATGTATCGATACA
21325 CACCTAGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (32 bp):
TGTATCGATACAAAGAACATGTATCGATACAT
Found at i:21473 original size:24 final size:25
Alignment explanation
Indices: 21419--21473 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 25
21409 CGATACTTTG
21419 AATACTT-TTACTTGAAAAACATTT
1 AATACTTATTACTTGAAAAACATTT
*
21443 AAT--TTATTGCTTGAAAAACA-TT
1 AATACTTATTACTTGAAAAACATTT
21465 AATACTTAT
1 AATACTTAT
21474 CTCTAAAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 7 0.26
23 13 0.48
24 7 0.26
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (25 bp):
AATACTTATTACTTGAAAAACATTT
Found at i:23601 original size:21 final size:22
Alignment explanation
Indices: 23554--23605 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
23544 ATTTTTACTT
*
23554 AAAAACATTTGATTTAAAGTTC
1 AAAAACATTTGATTTAAAGCTC
23576 AAAAACATTTG-TTTATAA-CTC
1 AAAAACATTTGATTTA-AAGCTC
*
23597 TAAAACATT
1 AAAAACATT
23606 CATTGATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.37
Consensus pattern (22 bp):
AAAAACATTTGATTTAAAGCTC
Found at i:24034 original size:22 final size:22
Alignment explanation
Indices: 24002--24054 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
23992 GGCTCTCGTT
24002 TAAAAAA-TTTCTCCCCCTTGA
1 TAAAAAATTTTCTCCCCCTTGA
24023 TAAAAAATTTTCTCCCCCTTGA
1 TAAAAAATTTTCTCCCCCTTGA
24045 TAAAAAATTT
1 TAAAAAATTT
24055 ATTTTCAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 7 0.23
22 24 0.77
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.36
Consensus pattern (22 bp):
TAAAAAATTTTCTCCCCCTTGA
Found at i:25714 original size:20 final size:20
Alignment explanation
Indices: 25689--25728 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
25679 TTTGTTGATA
25689 ATTTTG-ATGAAAAATGAAGT
1 ATTTTGAATG-AAAATGAAGT
25709 ATTTTGAAATGAAAATGAAG
1 ATTTTG-AATGAAAATGAAG
25729 AAATTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 9 0.50
22 3 0.17
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (20 bp):
ATTTTGAATGAAAATGAAGT
Found at i:25725 original size:21 final size:21
Alignment explanation
Indices: 25699--25738 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25689 ATTTTGATGA
* *
25699 AAAATGAAGTATTTTGAAATG
1 AAAATGAAGAAATTTGAAATG
25720 AAAATGAAGAAATTTGAAA
1 AAAATGAAGAAATTTGAAA
25739 AAGATTTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.28
Consensus pattern (21 bp):
AAAATGAAGAAATTTGAAATG
Found at i:30562 original size:13 final size:13
Alignment explanation
Indices: 30546--30576 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
30536 ACAATTCATC
30546 ATGTATCGATACA
1 ATGTATCGATACA
30559 ATGTATCGATACA
1 ATGTATCGATACA
30572 ATGTA
1 ATGTA
30577 CCATGTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:30591 original size:33 final size:33
Alignment explanation
Indices: 30524--30592 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
30514 CCGTTAGAAG
* *
30524 CAATGTATCAATACAATTCATCATGTATCGATA
1 CAATGTATCAATACAATTCACCATGTATCAATA
* *
30557 CAATGTATCGATACAATGT-ACCATGTATTAATA
1 CAATGTATCAATACAAT-TCACCATGTATCAATA
30590 CAA
1 CAA
30593 ACAGTGGTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (33 bp):
CAATGTATCAATACAATTCACCATGTATCAATA
Found at i:30646 original size:20 final size:19
Alignment explanation
Indices: 30621--30693 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
30611 CTGCCAGTTT
**
30621 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
*
30641 CATGTATCGATATAATGAA
1 CATGTATCGATACAATGAA
* *
30660 TATGTATCGATACAAAGCATA
1 CATGTATCGATACAATG-A-A
30681 -ATGTATCGATACA
1 CATGTATCGATACA
30694 TCTGGGTGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 16 0.36
20 28 0.62
21 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:30666 original size:19 final size:20
Alignment explanation
Indices: 30642--30693 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
30632 ACAATTGTCC
* *
30642 ATGTATCGATATAATGAAT-
1 ATGTATCGATACAAAGAATA
*
30661 ATGTATCGATACAAAGCATA
1 ATGTATCGATACAAAGAATA
30681 ATGTATCGATACA
1 ATGTATCGATACA
30694 TCTGGGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAAAGAATA
Found at i:33213 original size:33 final size:33
Alignment explanation
Indices: 33176--33240 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
33166 TTTGAAGTAA
*
33176 TGTATCGATACAAT-TAATCATGTATCGATACAT
1 TGTATCGATACAATGT-ACCATGTATCGATACAT
*
33209 TGTATCGATACAATGTGCCATGTATCGATACA
1 TGTATCGATACAATGTACCATGTATCGATACA
33241 AACAGTGGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGTATCGATACAT
Found at i:33214 original size:13 final size:13
Alignment explanation
Indices: 33196--33220 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33186 CAATTAATCA
33196 TGTATCGATACAT
1 TGTATCGATACAT
33209 TGTATCGATACA
1 TGTATCGATACA
33221 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:33315 original size:19 final size:20
Alignment explanation
Indices: 33270--33316 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
33260 CTGCCAGTTT
*
33270 CATGTATCGAAACAATTGTA
1 CATGTATCGAAACAATTGAA
* *
33290 TATGTATCGACACAA-TGAA
1 CATGTATCGAAACAATTGAA
33309 CATGTATC
1 CATGTATC
33317 CATACATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGAAACAATTGAA
Found at i:33355 original size:33 final size:33
Alignment explanation
Indices: 33310--33389 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
33300 CACAATGAAC
* *
33310 ATGTATCCATACATTGTATCGATACAAAGCATA
1 ATGTATCGATACATTGTATCAATACAAAGCATA
*
33343 ATGTATCGATACATTTTATCAATACAAAGCATA
1 ATGTATCGATACATTGTATCAATACAAAGCATA
33376 ATGTATCGATACAT
1 ATGTATCGATACAT
33390 CTGGGTGTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (33 bp):
ATGTATCGATACATTGTATCAATACAAAGCATA
Found at i:33461 original size:104 final size:104
Alignment explanation
Indices: 33339--33563 Score: 398
Period size: 104 Copynumber: 2.2 Consensus size: 104
33329 CGATACAAAG
*
33339 CATAATGTATCGATACATTTTATCAATACAAAGCATAATGTATCGATACATCTGGGTGTGTATCG
1 CATAATGTATCGATACATTGTATCAATACAAAGCATAATGTATCGATACATCTGGGTGTGTATCG
33404 ATACATACAAGGGTTTTGACCTTTGTAGCTT-AAGTCAAC
66 ATACATACAAGGGTTTTGACCTTTGTA-CTTCAAGTCAAC
* *
33443 CATAATGTATCGATACATTGTATCGATACAAAGCATAATGTATTGATACATCTGGGTGTGTATCG
1 CATAATGTATCGATACATTGTATCAATACAAAGCATAATGTATCGATACATCTGGGTGTGTATCG
33508 ATACATACAAGGGTTTTGACCTTTGTACTTCAAGTCAAC
66 ATACATACAAGGGTTTTGACCTTTGTACTTCAAGTCAAC
*
33547 CATACTGTATCGATACA
1 CATAATGTATCGATACA
33564 AATACCTATG
Statistics
Matches: 116, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
103 3 0.03
104 113 0.97
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (104 bp):
CATAATGTATCGATACATTGTATCAATACAAAGCATAATGTATCGATACATCTGGGTGTGTATCG
ATACATACAAGGGTTTTGACCTTTGTACTTCAAGTCAAC
Found at i:33466 original size:13 final size:13
Alignment explanation
Indices: 33448--33472 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33438 TCAACCATAA
33448 TGTATCGATACAT
1 TGTATCGATACAT
33461 TGTATCGATACA
1 TGTATCGATACA
33473 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:35663 original size:20 final size:20
Alignment explanation
Indices: 35634--35681 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
35624 TTTTCATTCC
* *
35634 AAAA-AAAAGAAAAATAAGG
1 AAAATAAAAGAAAAAGAAAG
35653 AAAATAAAAGAAAAAGAAAG
1 AAAATAAAAGAAAAAGAAAG
35673 AAAATAAAA
1 AAAATAAAA
35682 AGTAAATCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.06
Consensus pattern (20 bp):
AAAATAAAAGAAAAAGAAAG
Found at i:35665 original size:10 final size:9
Alignment explanation
Indices: 35634--35681 Score: 51
Period size: 10 Copynumber: 4.9 Consensus size: 9
35624 TTTTCATTCC
35634 AAAAAAAAG
1 AAAAAAAAG
*
35643 AAAAATAAGG
1 AAAAA-AAAG
35653 AAAATAAAAG
1 AAAA-AAAAG
35663 AAAAAGAAAG
1 AAAAA-AAAG
35673 AAAATAAAA
1 AAAA-AAAA
35682 AGTAAATCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
9 6 0.18
10 25 0.76
11 2 0.06
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.06
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:36276 original size:19 final size:20
Alignment explanation
Indices: 36254--36303 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
36244 AAAAAACTAG
36254 TTTTAAAAAT-ACAAAT-AAT
1 TTTTAAAAATGA-AAATCAAT
*
36273 TTTTTAAAATGAAAATGCAAT
1 TTTTAAAAATGAAAAT-CAAT
36294 TTTTAAAAAT
1 TTTTAAAAAT
36304 CATTCTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 13 0.50
20 1 0.04
21 12 0.46
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (20 bp):
TTTTAAAAATGAAAATCAAT
Found at i:37938 original size:77 final size:77
Alignment explanation
Indices: 37847--38017 Score: 333
Period size: 77 Copynumber: 2.2 Consensus size: 77
37837 TTATTAATTC
37847 TTGCATTTCCATCATTTATAGGCACTTATGTGCTTACACCTACACCATTCAATGAGCACTTGCAT
1 TTGCATTTCCATCATTTATAGGCACTTATGTGCTTACACCTACACCATTCAATGAGCACTTGCAT
37912 TATTGTTTATCA
66 TATTGTTTATCA
37924 TTGCATTTCCATCATTTATAGGCACTTATGTGCTTACACCTACACCATTCAATGAGCACTTGCAT
1 TTGCATTTCCATCATTTATAGGCACTTATGTGCTTACACCTACACCATTCAATGAGCACTTGCAT
37989 TATTGTTTATCA
66 TATTGTTTATCA
*
38001 TTGCATTTGCATCATTT
1 TTGCATTTCCATCATTT
38018 CCTGACTTCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 93 1.00
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (77 bp):
TTGCATTTCCATCATTTATAGGCACTTATGTGCTTACACCTACACCATTCAATGAGCACTTGCAT
TATTGTTTATCA
Found at i:42164 original size:50 final size:51
Alignment explanation
Indices: 42049--42187 Score: 163
Period size: 52 Copynumber: 2.7 Consensus size: 51
42039 TTAACTGGCT
* * * * *
42049 TGTATTGATACATTAAAGAATGTATCGATACATTTGGGTCAAAAACCCAGAA
1 TGTATCGATACAATAAAAAATGTATCGATACATTTGGATC-AAAACCCAAAA
* * * *
42101 TGTATCGATACAATGAAAAATGTATCTATATATTTGGATC-AAACCTAAAA
1 TGTATCGATACAATAAAAAATGTATCGATACATTTGGATCAAAACCCAAAA
42151 TGTATCGATACAATAAAAAAAATGTATCGATACATTT
1 TGTATCGATACAAT--AAAAAATGTATCGATACATTT
42188 TCTTTCCAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
50 22 0.30
52 51 0.70
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (51 bp):
TGTATCGATACAATAAAAAATGTATCGATACATTTGGATCAAAACCCAAAA
Found at i:42268 original size:20 final size:20
Alignment explanation
Indices: 42243--42309 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
42233 CATTTCAAAC
42243 ATGTATCAATACATCCACTT
1 ATGTATCAATACATCCACTT
*
42263 ATGTATCAATACATCTACTT
1 ATGTATCAATACATCCACTT
* * *
42283 ATGCATCGATACATTCACTT
1 ATGTATCAATACATCCACTT
42303 ATTGTAT
1 A-TGTAT
42310 TGATACAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
20 36 0.90
21 4 0.10
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (20 bp):
ATGTATCAATACATCCACTT
Found at i:45825 original size:21 final size:21
Alignment explanation
Indices: 45800--45846 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
45790 TTCTACAAAT
*
45800 TGTATCAATACAAATAGTAAA
1 TGTATCAATACAAACAGTAAA
*
45821 TGTATCGATACAAACAGTAAA
1 TGTATCAATACAAACAGTAAA
45842 TGTAT
1 TGTAT
45847 TGATACATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.30
Consensus pattern (21 bp):
TGTATCAATACAAACAGTAAA
Found at i:45851 original size:21 final size:21
Alignment explanation
Indices: 45807--45876 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
45797 AATTGTATCA
* *
45807 ATACAAATAGTAAATGTATCG
1 ATACAAACAGTAAATGTATTG
45828 ATACAAACAGTAAATGTATTG
1 ATACAAACAGTAAATGTATTG
** *
45849 ATACATGC-CTGAAATGTATTG
1 ATACAAACAGT-AAATGTATTG
45870 ATACAAA
1 ATACAAA
45877 ACTACCTTGC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 1 0.02
21 40 0.98
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (21 bp):
ATACAAACAGTAAATGTATTG
Found at i:48131 original size:2 final size:2
Alignment explanation
Indices: 48126--48152 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
48116 TTTTTTTAGA
48126 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
48153 ATGCTTCCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:49579 original size:12 final size:12
Alignment explanation
Indices: 49562--49599 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
49552 TTTTTCTATG
49562 TTTTACAAATAT
1 TTTTACAAATAT
49574 TTTTACAAATAT
1 TTTTACAAATAT
*
49586 GTTTT-GAAATAT
1 -TTTTACAAATAT
49598 TT
1 TT
49600 ATTTAAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 2 0.08
12 18 0.75
13 4 0.17
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (12 bp):
TTTTACAAATAT
Found at i:49924 original size:71 final size:71
Alignment explanation
Indices: 49835--49984 Score: 241
Period size: 71 Copynumber: 2.1 Consensus size: 71
49825 AACATTCACT
* * *
49835 TTTTG-GAAATTTAACTAGTAAGAA-TTTGATTCCCATGTTTGGTATGCTACATTCTTAAGAATG
1 TTTTGAGAAATTTAACTAGTAA-AAGTTTGATTCCCATGTTCGGTATGCTACATTCCTAAGAATA
49898 AGCTTTA
65 AGCTTTA
49905 TTTTGAGAAATTTAACTAGTAAAAGTTTGATTCCCATGTTCGGTATGCTACATTCCTAAGAATAA
1 TTTTGAGAAATTTAACTAGTAAAAGTTTGATTCCCATGTTCGGTATGCTACATTCCTAAGAATAA
*
49970 GCTTTC
66 GCTTTA
49976 TTTTGAGAA
1 TTTTGAGAA
49985 CTATTTTTCA
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
70 7 0.09
71 67 0.91
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.40
Consensus pattern (71 bp):
TTTTGAGAAATTTAACTAGTAAAAGTTTGATTCCCATGTTCGGTATGCTACATTCCTAAGAATAA
GCTTTA
Found at i:57303 original size:51 final size:53
Alignment explanation
Indices: 57187--57306 Score: 147
Period size: 51 Copynumber: 2.3 Consensus size: 53
57177 GAAAATAGTA
* *
57187 GGGTTGGAGTATCCCTAGAGATGAAGAAATTCAATGTTTTAGAAAATAAAAATG
1 GGGTT-GAGTATCCCTAGAGATGAAGAAATTCAATATTTTAGAAAATAAAAACG
** *
57241 GATTTAGAGTATCCCTA-AGATGAA-AAATTCAATATTTT-GAAAGTAAAAACG
1 GGGTT-GAGTATCCCTAGAGATGAAGAAATTCAATATTTTAGAAAATAAAAACG
57292 GGGTTGTAGTATCCC
1 GGGTTG-AGTATCCC
57307 CTTGGAAATG
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
50 1 0.02
51 22 0.39
52 13 0.23
53 7 0.12
54 14 0.25
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (53 bp):
GGGTTGAGTATCCCTAGAGATGAAGAAATTCAATATTTTAGAAAATAAAAACG
Found at i:57337 original size:80 final size:80
Alignment explanation
Indices: 57244--57472 Score: 229
Period size: 80 Copynumber: 2.9 Consensus size: 80
57234 AAAAATGGAT
*
57244 TTAGAGTAT-CCCTAAGATGAAAAATTCAATATTTTGAAAGTAAAAACGGGGTTGTAGTATCCCC
1 TTAGAGTATCCCCTAAGATGAAAAATTCAATATTTTGAAAGTAAAAACGGGGTTGGAGTAT-CCC
* *
57308 TT-GGAAATGATGGGA
65 TTCGAAAATAATGGGA
* * * * * *
57323 TTGGAGTATCCCCTAAGATGAAAATTTCAGTGTTTGGGGAA-TAAAAACGGGGTTGGAGTATCCC
1 TTAGAGTATCCCCTAAGATGAAAAATTCAATATTT-TGAAAGTAAAAACGGGGTTGGAGTATCCC
*
57387 TTCGAAAATAATGGGG
65 TTCGAAAATAATGGGA
* * * * * *
57403 TTAGAGTATCCCC-GAGATAAAAAATTTAATATTTT-AGAAGT--AAACAGGATTGGAGTGTCCC
1 TTAGAGTATCCCCTAAGATGAAAAATTCAATATTTTGA-AAGTAAAAACGGGGTTGGAGTATCCC
*
57464 CTCGAAAAT
65 TTCGAAAAT
57473 GGAGGGGTTG
Statistics
Matches: 122, Mismatches: 23, Indels: 12
0.78 0.15 0.08
Matches are distributed among these distances:
77 25 0.20
78 2 0.02
79 29 0.24
80 63 0.52
81 3 0.02
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (80 bp):
TTAGAGTATCCCCTAAGATGAAAAATTCAATATTTTGAAAGTAAAAACGGGGTTGGAGTATCCCT
TCGAAAATAATGGGA
Found at i:61184 original size:24 final size:23
Alignment explanation
Indices: 61157--61209 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
61147 AGCGGATTTC
61157 TTGTTTTCATGTTTTCT-TGTTCTT
1 TTGTTTTCATGTTTT-TATGTT-TT
*
61181 TTGTTTTTATGTTTTTATGTTTT
1 TTGTTTTCATGTTTTTATGTTTT
61204 TTGTTT
1 TTGTTT
61210 ATTGCATCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.06, C:0.06, G:0.13, T:0.75
Consensus pattern (23 bp):
TTGTTTTCATGTTTTTATGTTTT
Found at i:61204 original size:9 final size:8
Alignment explanation
Indices: 61158--61209 Score: 56
Period size: 8 Copynumber: 6.6 Consensus size: 8
61148 GCGGATTTCT
*
61158 TGTTTTCA
1 TGTTTTTA
61166 TGTTTTCT-
1 TGTTTT-TA
61174 TGTTCTTT-
1 TGTT-TTTA
61182 TGTTTTTA
1 TGTTTTTA
61190 TGTTTTTA
1 TGTTTTTA
61198 TGTTTTT-
1 TGTTTTTA
61205 TGTTT
1 TGTTT
61210 ATTGCATCTC
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
7 8 0.20
8 30 0.75
9 2 0.05
ACGTcount: A:0.06, C:0.06, G:0.13, T:0.75
Consensus pattern (8 bp):
TGTTTTTA
Found at i:65599 original size:2 final size:2
Alignment explanation
Indices: 65592--65623 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
65582 GGCTCTAAAT
*
65592 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
65624 CACATTTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:73444 original size:16 final size:16
Alignment explanation
Indices: 73423--73453 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73413 TTAAAATAAA
73423 TAAAATGTATATTAAT
1 TAAAATGTATATTAAT
*
73439 TAAAATTTATATTAA
1 TAAAATGTATATTAA
73454 CATAAAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
TAAAATGTATATTAAT
Found at i:75394 original size:37 final size:37
Alignment explanation
Indices: 75353--75426 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
75343 TTTTTAATAA
* * *
75353 AATTAGAATTATTATTTATAAATGTGCTAAATTTTAT
1 AATTAAAATTATTATTTATAAATGTGATAAATCTTAT
*
75390 AATTAAAATTTTTATTTATAAATGTGATAAATCTTAT
1 AATTAAAATTATTATTTATAAATGTGATAAATCTTAT
75427 TAATAATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.49
Consensus pattern (37 bp):
AATTAAAATTATTATTTATAAATGTGATAAATCTTAT
Found at i:76592 original size:72 final size:74
Alignment explanation
Indices: 76454--76610 Score: 189
Period size: 72 Copynumber: 2.2 Consensus size: 74
76444 ATTATCACAT
* * * * * **
76454 AAAATCATTTAACCAAAATTTTTCAATGAAGTTAAAATTCTTATTTATATGTGTGATAAATTTTA
1 AAAATCATTTAACCAAAATTTTTCAATAAAATTAAAATTCTAATTTATATATGTGAAAAACCTTA
76519 TT-ATA-AA
66 TTAATAGAA
76526 AAAATCATTTAA-CAAAATTTTATCAATAAAATTAAAATTCTAATTTAT-TAATGTGAAAAACCT
1 AAAATCATTTAACCAAAATTTT-TCAATAAAATTAAAATTCTAATTTATAT-ATGTGAAAAACCT
*
76589 TATTAATAGTA
64 TATTAATAGAA
76600 AAAAT-ATTTAA
1 AAAATCATTTAA
76611 AATGGCAAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
71 10 0.14
72 48 0.66
73 9 0.12
74 6 0.08
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (74 bp):
AAAATCATTTAACCAAAATTTTTCAATAAAATTAAAATTCTAATTTATATATGTGAAAAACCTTA
TTAATAGAA
Found at i:77617 original size:2 final size:2
Alignment explanation
Indices: 77610--77639 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
77600 CCACTATTAC
77610 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
77640 CATGTTCCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80065 original size:23 final size:23
Alignment explanation
Indices: 80035--80079 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
80025 TATAAATAAC
80035 ATGGCCATATAAAGAATTACCCA
1 ATGGCCATATAAAGAATTACCCA
80058 ATGGCCATATAAAGAATTACCC
1 ATGGCCATATAAAGAATTACCC
80080 TTTTTATGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.42, C:0.22, G:0.13, T:0.22
Consensus pattern (23 bp):
ATGGCCATATAAAGAATTACCCA
Found at i:83980 original size:2 final size:2
Alignment explanation
Indices: 83973--84003 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
83963 ACGTTGTTTA
83973 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
84004 AGGATCCTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:84522 original size:17 final size:17
Alignment explanation
Indices: 84469--84523 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
84459 ATGAATATTT
84469 TAAAATTTATAT-AATA
1 TAAAATTTATATAAATA
84485 T-AAA-TTAT-TAACATA
1 TAAAATTTATATAA-ATA
84500 TCAAAATTTATATAAATA
1 T-AAAATTTATATAAATA
84518 TAAAAT
1 TAAAAT
84524 ATATTAAACA
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
13 1 0.03
14 5 0.15
15 7 0.21
16 1 0.03
17 8 0.24
18 8 0.24
19 3 0.09
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAAATTTATATAAATA
Found at i:84958 original size:3 final size:3
Alignment explanation
Indices: 84950--84990 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
84940 TGAGTTTTTT
84950 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
84991 TTTTAATTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:85345 original size:39 final size:39
Alignment explanation
Indices: 85253--85345 Score: 107
Period size: 39 Copynumber: 2.4 Consensus size: 39
85243 AATATATTAG
* * *
85253 TAATATATAGATTATTTATTAAAATTTAAACGATGTGAT
1 TAATATATAGATTTTTTATTAAAATTTAAACGATGAGAC
*
85292 TAATATATAAATTTTTTATTAAAATTTGAAA-GATGAGAC
1 TAATATATAGATTTTTTATTAAAATTT-AAACGATGAGAC
* * *
85331 TGATGTATGGATTTT
1 TAATATATAGATTTT
85346 GTTTTTGAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
39 42 0.93
40 3 0.07
ACGTcount: A:0.41, C:0.02, G:0.13, T:0.44
Consensus pattern (39 bp):
TAATATATAGATTTTTTATTAAAATTTAAACGATGAGAC
Found at i:85591 original size:166 final size:163
Alignment explanation
Indices: 85348--85757 Score: 482
Period size: 166 Copynumber: 2.5 Consensus size: 163
85338 TGGATTTTGT
* * * * * *
85348 TTTTGAATAAATATAATAAAT-TATAAATTCTTAATGAAAATCAAATTTTTTTTAATATGAAAGA
1 TTTTGAATAAATATGATAAATGCATAGATTCTTAATGAGAATCAAATTCTTTCTAATATGAAAGA
* * * * *
85412 AGTTGAAAAGACTAATGCATGGATTATAAATGTTAGACTATAAAGAATAGACTAATGCATGGATT
66 AGTTGATAAGACTAATGCATGGATTATAAATATCAGACTACAAAGAATAGACTAATACATGGATT
* *
85477 GAAATTCAAAAGATGGGACTAATGCATAGATTCTAC
131 GAAATTCAAAAGAGGGGACTAAAGCATAGA-T-T-C
* * * * *
85513 TTTTGAATAAATATGATAAATGCATAGATTCTTAATGGGAATCAGATTCTTTCTGATATAAAATA
1 TTTTGAATAAATATGATAAATGCATAGATTCTTAATGAGAATCAAATTCTTTCTAATATGAAAGA
* * * * *
85578 AGTTGATAAGACTAATGCATGGATTCTAAATATCAGAGTACAAAGAATATATTAATATATGGATT
66 AGTTGATAAGACTAATGCATGGATTATAAATATCAGACTACAAAGAATAGACTAATACATGGATT
** * *
85643 GAAATTTGAAAGAGGGGACTAAAGCCTAGATTG
131 GAAATTCAAAAGAGGGGACTAAAGCATAGATTC
* * *
85676 TTTTGATATAAATATGATTAATGCATAGATTAC-TAATGAGAATCAAATTCCTTCTCATATGAAA
1 TTTTGA-ATAAATATGATAAATGCATAGATT-CTTAATGAGAATCAAATTCTTTCTAATATGAAA
*
85740 GAAGTTGATAAAACTAAT
64 GAAGTTGATAAGACTAAT
85758 ACATAATGGA
Statistics
Matches: 207, Mismatches: 35, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
163 6 0.03
164 66 0.32
165 22 0.11
166 113 0.55
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (163 bp):
TTTTGAATAAATATGATAAATGCATAGATTCTTAATGAGAATCAAATTCTTTCTAATATGAAAGA
AGTTGATAAGACTAATGCATGGATTATAAATATCAGACTACAAAGAATAGACTAATACATGGATT
GAAATTCAAAAGAGGGGACTAAAGCATAGATTC
Found at i:86017 original size:91 final size:92
Alignment explanation
Indices: 85824--86020 Score: 236
Period size: 92 Copynumber: 2.2 Consensus size: 92
85814 GTAACGCATG
* * * * * * **
85824 GATTGTAAATATCAGACTACAAGGATTAAACTAATGCATAAATTGTGTTTGAGTATCGGATTCCT
1 GATTGTAAATGTCAGACTACAAGAAATAAACTAATGCATAAATTATATTTGAGAATCAAATTCCT
*
85889 TTTGATAGAAAGAAAGAAAAGTAGATT
66 TTTGATAGAAAGAAAAAAAAGTAGATT
* ** *
85916 GATTGTAAATGTTAGACTACAAGAAATAAACTAATGCATGGATTATATTTGAGAATCAAATT-TT
1 GATTGTAAATGTCAGACTACAAGAAATAAACTAATGCATAAATTATATTTGAGAATCAAATTCCT
* *
85980 TTTGGTAGAAA-ATAAAAAAAGTTGATT
66 TTTGATAGAAAGA-AAAAAAAGTAGATT
86007 GATTGTAAATGTCA
1 GATTGTAAATGTCA
86021 CAATTAAAAG
Statistics
Matches: 88, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
90 1 0.01
91 36 0.41
92 51 0.58
ACGTcount: A:0.42, C:0.07, G:0.18, T:0.33
Consensus pattern (92 bp):
GATTGTAAATGTCAGACTACAAGAAATAAACTAATGCATAAATTATATTTGAGAATCAAATTCCT
TTTGATAGAAAGAAAAAAAAGTAGATT
Found at i:86258 original size:45 final size:45
Alignment explanation
Indices: 86136--86247 Score: 149
Period size: 45 Copynumber: 2.5 Consensus size: 45
86126 ATCATTTTCG
* *
86136 TTTTCATTCTTACTCGTTGTT-TT-TCTAAAT-TTAGTAATAGTACT
1 TTTTCATTCTTA-TCTTTGTTATTCGCT-AATGTTAGTAATAGTACT
*
86180 TTTTTATTCTTATCTTTGTTATTCGCTAATGTTAGTAATAGTACT
1 TTTTCATTCTTATCTTTGTTATTCGCTAATGTTAGTAATAGTACT
*
86225 TTTTCATTCTTATCTTTTTTATT
1 TTTTCATTCTTATCTTTGTTATT
86248 TGTTAGTGTT
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
43 7 0.12
44 16 0.27
45 37 0.62
ACGTcount: A:0.21, C:0.12, G:0.08, T:0.59
Consensus pattern (45 bp):
TTTTCATTCTTATCTTTGTTATTCGCTAATGTTAGTAATAGTACT
Found at i:89788 original size:21 final size:22
Alignment explanation
Indices: 89750--89798 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
89740 GTTCTATCAA
*
89750 TTATT-AATTTAATTTAATT-T
1 TTATTGAATTTAATCTAATTAT
89770 TATATTGAATTT-ATCTAATTAT
1 T-TATTGAATTTAATCTAATTAT
89792 TTATTGA
1 TTATTGA
89799 GTGTTGATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 1 0.04
21 17 0.68
22 7 0.28
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (22 bp):
TTATTGAATTTAATCTAATTAT
Found at i:91339 original size:180 final size:179
Alignment explanation
Indices: 91117--91453 Score: 500
Period size: 180 Copynumber: 1.9 Consensus size: 179
91107 TTTTTTTAAA
* **
91117 AAAATATTAATTTTAGGGAAATTGAATTTTTCTAAATTTTTAAATTTAACTTCTAAATTT-GAAA
1 AAAATATTAATTTTAGGAAAACCGAATTTTTCTAAATTTTTAAATTTAACTTCT-AATTTCG-AA
* * *
91181 AATTATATTTCGTACCTGACG-GAAAACCAGGGGATACGAAAGGTGTTAAAAAAAATTTCATACC
64 AATTATATTTCGTACCCGACGAAAAAACCAGGGAATACGAAAGGTGTT--AAAAAATTTCATACC
* **
91245 CCTATGGAAAACCATAGGGATATGAAAACATAAACAACCTCATATTCTTTTTT
127 CCTACGGAAAACCATAGAAATATGAAAACATAAACAACCTCATATTCTTTTTT
91298 AAAATATTAA-TTTAGGAAAACCGAATTTTTCTAAATTTTTAAATTTAACTTCTAATTTCGAAAA
1 AAAATATTAATTTTAGGAAAACCGAATTTTTCTAAATTTTTAAATTTAACTTCTAATTTCGAAAA
* * * *
91362 TTATGTTTCGTACCCGACGAAAAAATCAGGGAATACGAAAGGTGTTAAAAAATTTTATACCCTTA
66 TTATATTTCGTACCCGACGAAAAAACCAGGGAATACGAAAGGTGTTAAAAAATTTCATACCCCTA
91427 CGGAAAACCATAGAAATATGAAAACAT
131 CGGAAAACCATAGAAATATGAAAACAT
91454 GTTTTGAGTG
Statistics
Matches: 141, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
178 41 0.29
179 26 0.18
180 64 0.45
181 10 0.07
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.33
Consensus pattern (179 bp):
AAAATATTAATTTTAGGAAAACCGAATTTTTCTAAATTTTTAAATTTAACTTCTAATTTCGAAAA
TTATATTTCGTACCCGACGAAAAAACCAGGGAATACGAAAGGTGTTAAAAAATTTCATACCCCTA
CGGAAAACCATAGAAATATGAAAACATAAACAACCTCATATTCTTTTTT
Found at i:92601 original size:21 final size:21
Alignment explanation
Indices: 92577--92618 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
92567 TTTTCTCCTC
92577 TTCTCTTCTCTTTCGA-TTGCT
1 TTCTCTTCTCTTT-GAGTTGCT
* *
92598 TTCTTTTTTCTTTGAGTTGCT
1 TTCTCTTCTCTTTGAGTTGCT
92619 CGAATCTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.05, C:0.21, G:0.12, T:0.62
Consensus pattern (21 bp):
TTCTCTTCTCTTTGAGTTGCT
Found at i:93092 original size:42 final size:42
Alignment explanation
Indices: 93036--93127 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
93026 ATTTCATTTG
* * *
93036 CATGAAA-GCATGCATGAAATGAAATG-ATGTAATGAATATTA
1 CATGAAATGCATGCATAAAATGAAATGCATGAAATGAA-AATA
* *
93077 CGTGAAATGCATGCATAAAATGTAATGCATGAAATGAAAATA
1 CATGAAATGCATGCATAAAATGAAATGCATGAAATGAAAATA
93119 CATGAAATG
1 CATGAAATG
93128 AACATTACGT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
41 6 0.14
42 28 0.65
43 9 0.21
ACGTcount: A:0.47, C:0.09, G:0.20, T:0.25
Consensus pattern (42 bp):
CATGAAATGCATGCATAAAATGAAATGCATGAAATGAAAATA
Found at i:93098 original size:29 final size:29
Alignment explanation
Indices: 93066--93156 Score: 87
Period size: 29 Copynumber: 3.1 Consensus size: 29
93056 GAAATGATGT
*
93066 AATGAATATTACGTGAAATGCATGCATAA
1 AATGAATATTACGTGAAATGCATGCATGA
* * * * *
93095 AATG--TAATGCATGAAATGAAAATACATGA
1 AATGAATATTACGTGAAATG--CATGCATGA
*
93124 AATGAACATTACGTGAAATGCATGCATGA
1 AATGAATATTACGTGAAATGCATGCATGA
93153 AATG
1 AATG
93157 TAATGCATGA
Statistics
Matches: 46, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
27 11 0.24
29 25 0.54
31 10 0.22
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (29 bp):
AATGAATATTACGTGAAATGCATGCATGA
Found at i:93139 original size:58 final size:58
Alignment explanation
Indices: 93045--93176 Score: 214
Period size: 58 Copynumber: 2.3 Consensus size: 58
93035 GCATGAAAGC
* * *
93045 ATGCATGAAATG-AAAT-GATGTAATGAATATTACGTGAAATGCATGCATAAAATGTA
1 ATGCATGAAATGAAAATACATGAAATGAACATTACGTGAAATGCATGCATAAAATGTA
*
93101 ATGCATGAAATGAAAATACATGAAATGAACATTACGTGAAATGCATGCATGAAATGTA
1 ATGCATGAAATGAAAATACATGAAATGAACATTACGTGAAATGCATGCATAAAATGTA
93159 ATGCATGAAATGAAAATA
1 ATGCATGAAATGAAAATA
93177 TGCAATATTT
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
56 12 0.17
57 4 0.06
58 54 0.77
ACGTcount: A:0.47, C:0.08, G:0.19, T:0.26
Consensus pattern (58 bp):
ATGCATGAAATGAAAATACATGAAATGAACATTACGTGAAATGCATGCATAAAATGTA
Found at i:93142 original size:16 final size:15
Alignment explanation
Indices: 93104--93176 Score: 62
Period size: 15 Copynumber: 5.0 Consensus size: 15
93094 AAATGTAATG
93104 CATGAAATGAAAATA
1 CATGAAATGAAAATA
*
93119 CATGAAATGAACATTA
1 CATGAAATGAA-AATA
* * *
93135 CGTGAAATG--CATG
1 CATGAAATGAAAATA
* *
93148 CATGAAATG-TAATG
1 CATGAAATGAAAATA
93162 CATGAAATGAAAATA
1 CATGAAATGAAAATA
93177 TGCAATATTT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
13 9 0.20
14 12 0.26
15 14 0.30
16 11 0.24
ACGTcount: A:0.49, C:0.10, G:0.18, T:0.23
Consensus pattern (15 bp):
CATGAAATGAAAATA
Found at i:93164 original size:14 final size:14
Alignment explanation
Indices: 93045--93173 Score: 93
Period size: 14 Copynumber: 9.1 Consensus size: 14
93035 GCATGAAAGC
93045 ATGCATGAAATGAA
1 ATGCATGAAATGAA
*
93059 ATG-ATGTAATGAA
1 ATGCATGAAATGAA
* * *
93072 TATTACGTGAAATG-C
1 -A-TGCATGAAATGAA
* *
93087 ATGCATAAAATGTA
1 ATGCATGAAATGAA
93101 ATGCATGAAATGAAA
1 ATGCATGAAATG-AA
*
93116 ATACATGAAATGAA
1 ATGCATGAAATGAA
* * *
93130 CATTACGTGAAATG-C
1 -A-TGCATGAAATGAA
*
93145 ATGCATGAAATGTA
1 ATGCATGAAATGAA
93159 ATGCATGAAATGAA
1 ATGCATGAAATGAA
93173 A
1 A
93174 ATATGCAATA
Statistics
Matches: 89, Mismatches: 18, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
13 26 0.29
14 33 0.37
15 14 0.16
16 16 0.18
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.26
Consensus pattern (14 bp):
ATGCATGAAATGAA
Found at i:93266 original size:3 final size:3
Alignment explanation
Indices: 93260--93295 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
93250 TAATTAATTA
93260 ATT ATT ATT ATT -TT ATT A-T ATT ATT ATT ATT -TT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
93296 TTTTTTGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
2 6 0.20
3 24 0.80
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:93284 original size:19 final size:18
Alignment explanation
Indices: 93256--93295 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
93246 TTTTTAATTA
93256 ATTAATTATTATTATTTT
1 ATTAATTATTATTATTTT
93274 ATTATATTATTATTATTTT
1 ATTA-ATTATTATTATTTT
93293 ATT
1 ATT
93296 TTTTTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTAATTATTATTATTTT
Found at i:93306 original size:6 final size:6
Alignment explanation
Indices: 93297--93341 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
93287 TATTTTATTT
*
93297 TTTTTG TTTTT- TTTTTCG TTTTTG TTTTTG GTTTTG TTTTT- TTTT
1 TTTTTG TTTTTG TTTTT-G TTTTTG TTTTTG TTTTTG TTTTTG TTTT
93342 AATTATTCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
5 9 0.26
6 21 0.60
7 5 0.14
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.84
Consensus pattern (6 bp):
TTTTTG
Found at i:93311 original size:12 final size:12
Alignment explanation
Indices: 93294--93339 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
93284 TATTATTTTA
93294 TTTTTTTTGTTT
1 TTTTTTTTGTTT
*
93306 TTTTTTTCGTTT
1 TTTTTTTTGTTT
*
93318 TTGTTTTTGGTTT
1 TT-TTTTTTGTTT
93331 TGTTTTTTT
1 T-TTTTTTT
93340 TTAATTATTC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 13 0.45
13 15 0.52
14 1 0.03
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.85
Consensus pattern (12 bp):
TTTTTTTTGTTT
Found at i:93916 original size:21 final size:22
Alignment explanation
Indices: 93892--93942 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
93882 GAAACAATCA
93892 CTTTTTTCTT-TTTTTTCCTCT
1 CTTTTTTCTTCTTTTTTCCTCT
*
93913 CTTTTTTTTTTCTTTTTTCCTCT
1 C-TTTTTTCTTCTTTTTTCCTCT
*
93936 CATTTTT
1 CTTTTTT
93943 GCTCTCTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 1 0.04
22 13 0.50
23 12 0.46
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (22 bp):
CTTTTTTCTTCTTTTTTCCTCT
Found at i:93919 original size:12 final size:12
Alignment explanation
Indices: 93902--93949 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
93892 CTTTTTTCTT
93902 TTTTTTCCTCTC
1 TTTTTTCCTCTC
* *
93914 TTTTTT-TTTTC
1 TTTTTTCCTCTC
93925 TTTTTTCCTCTC
1 TTTTTTCCTCTC
* *
93937 ATTTTTGCTCTC
1 TTTTTTCCTCTC
93949 T
1 T
93950 AGTTTTTTTC
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
11 9 0.32
12 19 0.68
ACGTcount: A:0.02, C:0.25, G:0.02, T:0.71
Consensus pattern (12 bp):
TTTTTTCCTCTC
Found at i:93921 original size:25 final size:23
Alignment explanation
Indices: 93893--93942 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
93883 AAACAATCAC
* *
93893 TTTTTTCTT-TTTTTTCCTCTCT
1 TTTTTTTTTCTTTTTTCCTCTCA
93915 TTTTTTTTTCTTTTTTCCTCTCA
1 TTTTTTTTTCTTTTTTCCTCTCA
93938 TTTTT
1 TTTTT
93943 GCTCTCTAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTTTTTTCTTTTTTCCTCTCA
Found at i:94622 original size:20 final size:20
Alignment explanation
Indices: 94597--94634 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
94587 AAAAAATTGA
94597 CATTGTATCAATACAATAGG
1 CATTGTATCAATACAATAGG
*
94617 CATTGTATTAATACAATA
1 CATTGTATCAATACAATA
94635 TGGCCCTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (20 bp):
CATTGTATCAATACAATAGG
Found at i:95250 original size:27 final size:27
Alignment explanation
Indices: 95207--95258 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
95197 AGTGCTTTAA
* *
95207 AGTGTAAAATTTTTTTGCAA-GTTTTTT
1 AGTGTAAAATGTCTTTG-AATGTTTTTT
95234 AGTGTAAAATGTCTTTGAATGTTTT
1 AGTGTAAAATGTCTTTGAATGTTTT
95259 GATATACTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 2 0.09
27 20 0.91
ACGTcount: A:0.27, C:0.04, G:0.17, T:0.52
Consensus pattern (27 bp):
AGTGTAAAATGTCTTTGAATGTTTTTT
Found at i:101363 original size:13 final size:13
Alignment explanation
Indices: 101345--101369 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101335 CATAAAATGT
101345 TGTATCGATACAA
1 TGTATCGATACAA
101358 TGTATCGATACA
1 TGTATCGATACA
101370 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:101367 original size:33 final size:33
Alignment explanation
Indices: 101325--101394 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
101315 TTCAACGATT
101325 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
101358 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
101391 TGTA
1 TGTA
101395 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:101453 original size:13 final size:13
Alignment explanation
Indices: 101435--101459 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101425 ATTACTCACA
101435 TGTATCGATACAT
1 TGTATCGATACAT
101448 TGTATCGATACA
1 TGTATCGATACA
101460 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:101588 original size:52 final size:52
Alignment explanation
Indices: 101468--101588 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
101458 CACTGATCTT
* *
101468 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
101520 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
101572 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
101589 ATAAATTTTC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:106229 original size:64 final size:65
Alignment explanation
Indices: 106112--106241 Score: 201
Period size: 64 Copynumber: 2.0 Consensus size: 65
106102 CTTATCTTTC
* *
106112 TCAAAAGATAAAGAATTGTAAAAGTTATACTTTGCTTTTAAAAAGTATCAATTCAAGATAGTGAA
1 TCAAAAGATAAAGAATTGTAAAAGTTATACTTTGCCTTGAAAAAGTATCAATTCAAGATAGTGAA
* *
106177 TCAAAAGATAAA-TATTGTAAAAGTTATACTTTGTCCTTGAAAAA-TATTAATTCAAGATAGTGA
1 TCAAAAGATAAAGAATTGTAAAAGTTATACTTTG-CCTTGAAAAAGTATCAATTCAAGATAGTGA
106240 A
65 A
106241 T
1 T
106242 TGGAACTTCT
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
64 40 0.67
65 20 0.33
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (65 bp):
TCAAAAGATAAAGAATTGTAAAAGTTATACTTTGCCTTGAAAAAGTATCAATTCAAGATAGTGAA
Found at i:113706 original size:32 final size:32
Alignment explanation
Indices: 113645--113707 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
113635 ATGAAAATTT
* *
113645 TTGGCAATATGCTGGAATTAGGCTGTAATTGA
1 TTGGAAATATGCTGGAATTAGGCTATAATTGA
* * *
113677 TTGGAAATATGCTGTAATTATGTTATAATTG
1 TTGGAAATATGCTGGAATTAGGCTATAATTG
113708 GACAAAAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.40
Consensus pattern (32 bp):
TTGGAAATATGCTGGAATTAGGCTATAATTGA
Found at i:115407 original size:41 final size:41
Alignment explanation
Indices: 115350--115459 Score: 202
Period size: 41 Copynumber: 2.7 Consensus size: 41
115340 AGAATCACAG
115350 CCTACATGAACCAGTAGATCTAGCACCTTAGAGCTTGACAA
1 CCTACATGAACCAGTAGATCTAGCACCTTAGAGCTTGACAA
115391 CCTACATGAACCAGTAGATCTAGCACCTTAGAGCTTGACAA
1 CCTACATGAACCAGTAGATCTAGCACCTTAGAGCTTGACAA
* *
115432 CCTACATGAACTAGCAGATCTAGCACCT
1 CCTACATGAACCAGTAGATCTAGCACCT
115460 AGACGCTCTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (41 bp):
CCTACATGAACCAGTAGATCTAGCACCTTAGAGCTTGACAA
Found at i:129775 original size:70 final size:67
Alignment explanation
Indices: 129664--129798 Score: 189
Period size: 70 Copynumber: 2.0 Consensus size: 67
129654 ATTGTAAGTA
* *
129664 AAATTTGCCCCTCCCCAAAAAACAAACAACTCTAGTATCCTAATTTCACTATTTCTCAAAAATGC
1 AAATTTGCCCCACCCCAAAAAACAAACAACTCTAGTATCCTAATTGCACTATTTCTCAAAAATGC
129729 TT
66 TT
* * * *
129731 AAATTTGCCCCACCTCAAAAACTGACTAACAACTCTATTATCCTAATTGGACTATTTCTCAAAAA
1 AAATTTGCCCCACCCCAAAAA---ACAAACAACTCTAGTATCCTAATTGCACTATTTCTCAAAAA
129796 TGC
63 TGC
129799 CGATATGCAT
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
67 19 0.32
70 40 0.68
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (67 bp):
AAATTTGCCCCACCCCAAAAAACAAACAACTCTAGTATCCTAATTGCACTATTTCTCAAAAATGC
TT
Found at i:135014 original size:3 final size:3
Alignment explanation
Indices: 135008--135048 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
134998 ATAAGAAAAT
135008 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
135049 AACCTGTTGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:135394 original size:6 final size:6
Alignment explanation
Indices: 135383--135416 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
135373 GCAATGAACT
135383 GAGTTG GAGTTG GAGTTG GAGTTG GAGTTG GAGT
1 GAGTTG GAGTTG GAGTTG GAGTTG GAGTTG GAGT
135417 GGGGAAGGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32
Consensus pattern (6 bp):
GAGTTG
Found at i:135950 original size:10 final size:10
Alignment explanation
Indices: 135935--135970 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
135925 AGAAAAAATA
135935 AAAATAATTT
1 AAAATAATTT
135945 AAAATAATTT
1 AAAATAATTT
135955 -AAATAATTT
1 AAAATAATTT
*
135964 AACATAA
1 AAAATAA
135971 AATCTTTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAATAATTT
Found at i:136331 original size:16 final size:16
Alignment explanation
Indices: 136310--136352 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
136300 ATTAAGTTTA
136310 ATTATATAA-AATATAT
1 ATTATATAATAATA-AT
136326 ATTATATAATAATAAT
1 ATTATATAATAATAAT
136342 ATT-T-TAATAAT
1 ATTATATAATAAT
136353 TATAAAAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 7 0.27
15 1 0.04
16 14 0.54
17 4 0.15
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTATATAATAATAAT
Found at i:138595 original size:22 final size:23
Alignment explanation
Indices: 138556--138605 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
138546 TTTCATTTTT
*
138556 ATAATATAATTCATAATAATTTA
1 ATAATATAATTCAAAATAATTTA
* *
138579 ATAATAT-ATTTAAAATATTTTA
1 ATAATATAATTCAAAATAATTTA
*
138601 TTAAT
1 ATAAT
138606 TGAAAAGTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
ATAATATAATTCAAAATAATTTA
Found at i:139197 original size:72 final size:73
Alignment explanation
Indices: 138932--139332 Score: 351
Period size: 72 Copynumber: 5.5 Consensus size: 73
138922 AGCTCATAAG
* * ** * * * *
138932 AGCTGGTGGTACCTATCTACCTCTAGTCCTCAAAGAATAGGACATTTTTCTTAACTATCGCAAAG
1 AGCTGATGGCACCTATCTACCTCTAGTCCTCAAAGAGCAAGACATTTTTCTTACCTAGCACAAAG
**
138997 CTTACACA
66 CCCACACA
* * * ** * * * * *
139005 AGTTGATGGCACTTATCTATCTCCGGTACTTAAATAGCAGGAC-TTTTTCTTACCTA-CTACATA
1 AGCTGATGGCACCTATCTACCTCTAGTCCTCAAAGAGCAAGACATTTTTCTTACCTAGC-ACAAA
*
139068 GCCCACATA
65 GCCCACACA
* * * * * * * * * *
139077 AGTTGATGGTACCAATTTATCTCCAATCCTCAAAGAGCAAGATATTTTTCTTATCTATCACAAAG
1 AGCTGATGGCACCTATCTACCTCTAGTCCTCAAAGAGCAAGACATTTTTCTTACCTAGCACAAAG
139142 CCCACACA
66 CCCACACA
* *
139150 AGCT-ATGGCACTTATCTACCTCTAGTCCTCAAAGAGAAAGACATTTTTCTTACCTAGCACAAAG
1 AGCTGATGGCACCTATCTACCTCTAGTCCTCAAAGAGCAAGACATTTTTCTTACCTAGCACAAAG
*
139214 TCCACACA
66 CCCACACA
* * * * * * *
139222 AGCTGGTGGCACCTATCTACTTCTAGTTCTCAAAAAGCAAGACGTTTTT-TTGCCTAGCATAAAG
1 AGCTGATGGCACCTATCTACCTCTAGTCCTCAAAGAGCAAGACATTTTTCTTACCTAGCACAAAG
*
139286 CGCACACA
66 CCCACACA
** * *
139294 AGCTGGCGACACCTATCTACCTCTAGTTCTCAAAGAGCA
1 AGCTGATGGCACCTATCTACCTCTAGTCCTCAAAGAGCA
139333 TGACGCCTTT
Statistics
Matches: 264, Mismatches: 60, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
71 1 0.00
72 167 0.63
73 95 0.36
74 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (73 bp):
AGCTGATGGCACCTATCTACCTCTAGTCCTCAAAGAGCAAGACATTTTTCTTACCTAGCACAAAG
CCCACACA
Found at i:139254 original size:145 final size:144
Alignment explanation
Indices: 138932--139330 Score: 365
Period size: 145 Copynumber: 2.8 Consensus size: 144
138922 AGCTCATAAG
* ** * *
138932 AGCTGGTGGTACCTATCTACCTCTAGTCCTCAAAGAATAGGACATTTTTCTTAACTATCGCAAAG
1 AGCTGGTGGTACCTATCTACTTCTAGTCCTCAAAGAGCAAGACATTTTTCTTAACTATCACAAAG
** * * ** * * * *
138997 CTTACACAAGTTGATGGCACTTATCTATCTCCGGTACTTAAATAGCAGGACTTTTTCTTACCTAC
66 CCCACACAAGCT-ATGGCACTTATCTACCTCTAGTACTCAAAGAGAAAGACTTTTTCTTACCTAC
* *
139062 TACATAGCCCACATA
130 TACAAAGCCCACACA
* * * * * * * *
139077 AGTTGATGGTACCAATTTA-TCTCCAATCCTCAAAGAGCAAGATATTTTTCTTATCTATCACAAA
1 AGCTGGTGGTACCTATCTACT-TCTAGTCCTCAAAGAGCAAGACATTTTTCTTAACTATCACAAA
*
139141 GCCCACACAAGCTATGGCACTTATCTACCTCTAGTCCTCAAAGAGAAAGACATTTTTCTTACCTA
65 GCCCACACAAGCTATGGCACTTATCTACCTCTAGTACTCAAAGAGAAAGAC-TTTTTCTTACCTA
*
139206 GC-ACAAAGTCCACACA
129 -CTACAAAGCCCACACA
* * * * ** * *
139222 AGCTGGTGGCACCTATCTACTTCTAGTTCTCAAAAAGCAAGACGTTTTT-TTGCCTAGCATAAAG
1 AGCTGGTGGTACCTATCTACTTCTAGTCCTCAAAGAGCAAGACATTTTTCTTAACTATCACAAAG
* * * *
139286 CGCACACAAGCT-GGCGACACCTATCTACCTCTAGTTCTCAAAGAG
66 CCCACACAAGCTATG-G-CACTTATCTACCTCTAGTACTCAAAGAG
139331 CATGACGCCT
Statistics
Matches: 202, Mismatches: 46, Indels: 12
0.78 0.18 0.05
Matches are distributed among these distances:
143 1 0.00
144 53 0.26
145 146 0.72
146 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (144 bp):
AGCTGGTGGTACCTATCTACTTCTAGTCCTCAAAGAGCAAGACATTTTTCTTAACTATCACAAAG
CCCACACAAGCTATGGCACTTATCTACCTCTAGTACTCAAAGAGAAAGACTTTTTCTTACCTACT
ACAAAGCCCACACA
Found at i:139709 original size:74 final size:72
Alignment explanation
Indices: 139617--140062 Score: 308
Period size: 74 Copynumber: 6.0 Consensus size: 72
139607 CACCAGTCTT
* * *
139617 CAAAAAGCATGAC-ATTTTTTCTTACCTACCATAAAGCTTACCCAAGCTAGTGGCACTTATCTAC
1 CAAAAAGC-TGACTCTTTTTTCTTACCTACCATAAAGC-CACACAAGCTAGTGGCACTTATCTAC
*
139681 CTTAGTTCA
64 CTTAGTCCA
* * * * *
139690 CAAAGAGCTAGACTC-TTTTT-TTACCTACCTTAAAGTCCACACAAGATTGTGGTACCACGTTAA
1 CAAAAAGCT-GACTCTTTTTTCTTACCTACCATAAAG-CCACACAAGCTAGTGG---CAC-TTAT
*
139753 CTTACCTTAGTCTA
60 C-TACCTTAGTCCA
* * * * * *
139767 CAAAGAGCTAGA-TGC-CTTTTCTTACCTACCACAAAGACCACACAAACTGGTGGCACCTATCTA
1 CAAAAAGCT-GACT-CTTTTTTCTTACCTACCATAAAG-CCACACAAGCTAGTGGCACTTATCTA
*
139830 TCTTAGTCCA
63 CCTTAGTCCA
* * * * * *
139840 CAAAAAGCTGAACACTTTTTTCGTACCTACCATAAAGCCTAAACAAGCTAATGACTCTTATCTAC
1 CAAAAAGCTG-ACTCTTTTTTCTTACCTACCATAAAGCC-ACACAAGCTAGTGGCACTTATCTAC
*
139905 CTTAATCCA
64 CTTAGTCCA
* * * * * * * *
139914 CAAAAAGCTGAACTCATTTTTCTTGCTTACCACAAATGCCACACAAGTTGGTGACACATATCTAC
1 CAAAAAGCTG-ACTCTTTTTTCTTACCTACCATAAA-GCCACACAAGCTAGTGGCACTTATCTAC
139979 CTTAGTCCA
64 CTTAGTCCA
* * * * * * ** *
139988 CAAAAAGTTGGACTTTTTTTTTCTTACCTACCACAAAACCCACACAAGTTGGTAACACCTATCTA
1 CAAAAAGCT-GAC-TCTTTTTTCTTACCTACCA-TAAAGCCACACAAGCTAGTGGCACTTATCTA
140053 CCTCTAGTCC
63 CCT-TAGTCC
140063 TCTTCTTACT
Statistics
Matches: 297, Mismatches: 57, Indels: 35
0.76 0.15 0.09
Matches are distributed among these distances:
72 27 0.09
73 38 0.13
74 113 0.38
75 52 0.18
76 14 0.05
77 27 0.09
78 26 0.09
ACGTcount: A:0.32, C:0.27, G:0.11, T:0.29
Consensus pattern (72 bp):
CAAAAAGCTGACTCTTTTTTCTTACCTACCATAAAGCCACACAAGCTAGTGGCACTTATCTACCT
TAGTCCA
Found at i:140084 original size:57 final size:56
Alignment explanation
Indices: 140008--140118 Score: 134
Period size: 57 Copynumber: 2.0 Consensus size: 56
139998 GACTTTTTTT
**
140008 TTCTTACCTACCACAAAACCCACACAAGTTGGTAACACCTATCTACCTCTAGTCCTC
1 TTCTTACCTACCACAAAACCCACACAAACTGGTAACACCTATCTACCT-TAGTCCTC
* * ** *
140065 TTCTTA-CTAACCATAAAACCTACACAAACTGGTGGCACCTATCTATCTTAGTCC
1 TTCTTACCT-ACCACAAAACCCACACAAACTGGTAACACCTATCTACCTTAGTCC
140119 ATGAAAAGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
56 8 0.17
57 38 0.83
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.28
Consensus pattern (56 bp):
TTCTTACCTACCACAAAACCCACACAAACTGGTAACACCTATCTACCTTAGTCCTC
Found at i:140375 original size:26 final size:27
Alignment explanation
Indices: 140346--140397 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 27
140336 GTATTTATTT
140346 GTAATATCTAACAACGACC-AAGAAGA
1 GTAATATCTAACAACGACCAAAGAAGA
140372 GTAATATCTAACAACGACCAAAGAAG
1 GTAATATCTAACAACGACCAAAGAAG
140398 GGTAGCTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.50, C:0.19, G:0.15, T:0.15
Consensus pattern (27 bp):
GTAATATCTAACAACGACCAAAGAAGA
Found at i:141486 original size:21 final size:21
Alignment explanation
Indices: 141460--141520 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
141450 AAAAAACTTT
*
141460 TCTAAAAACTTGCATTTTTTC
1 TCTAAAAACCTGCATTTTTTC
* * *
141481 TCTAAAATCCTACATTTGTTTT
1 TCTAAAAACCTGCATTT-TTTC
141503 TC-AAAAACCTGCATTTTT
1 TCTAAAAACCTGCATTTTT
141521 CCGCTCTTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
20 2 0.06
21 26 0.79
22 5 0.15
ACGTcount: A:0.30, C:0.20, G:0.05, T:0.46
Consensus pattern (21 bp):
TCTAAAAACCTGCATTTTTTC
Found at i:143809 original size:90 final size:89
Alignment explanation
Indices: 143655--143860 Score: 204
Period size: 91 Copynumber: 2.3 Consensus size: 89
143645 CATAACAAAT
* * * *
143655 TTTTGACTTTGGGAAAACTCCAACCCTCTACTTCGAGGAGATATTCCAACTCCATTCTTTAT-AA
1 TTTTGACTTTGGGGAAACTCCAACCCACTACTCCGAGGAGATATTCCAACTCCATTCTTCATAAA
* **
143719 AGAACTCAAATTTTTCTTTGTATAA
66 AAAACTCAAATTTTT-TTCATATAA
* * **
143744 TTTTGTCTTTGGGGAAACTCCAACTCCACTACTCCGAAGG-GATATTTCAA-TCTTGTTCTTCAT
1 TTTTGACTTTGGGGAAACTCCAAC-CCACTACTCCG-AGGAGATATTCCAACTC-CATTCTTCAT
*
143807 AAAAAAAACTTAAATTTTTTTCATATAA
63 -AAAAAAACTCAAATTTTTTTCATATAA
**
143835 TTTT-ACCTTTGGGGTTACTCCAACCC
1 TTTTGA-CTTTGGGGAAACTCCAACCC
143861 CATTCTTTAT
Statistics
Matches: 96, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
89 24 0.25
90 27 0.28
91 30 0.31
92 15 0.16
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (89 bp):
TTTTGACTTTGGGGAAACTCCAACCCACTACTCCGAGGAGATATTCCAACTCCATTCTTCATAAA
AAAACTCAAATTTTTTTCATATAA
Found at i:149610 original size:36 final size:36
Alignment explanation
Indices: 149567--150021 Score: 343
Period size: 36 Copynumber: 12.6 Consensus size: 36
149557 AATCTTTAAT
* **
149567 GCCTTTCTTGAGGATACTTCATCAAAAGTTTCCAAA
1 GCCTTTCTTGAGGATATTTCATCAAAAACTTCCAAA
* *
149603 GCCTTTCTTGAGGACATTTCATCAAAAAATATTCCAAA
1 GCCTTTCTTGAGGATATTTCATC-AAAAA-CTTCCAAA
* * *
149641 GCATATT-TTGAGGATATTTCAGC-AAAACCTCCAAA
1 GCCT-TTCTTGAGGATATTTCATCAAAAACTTCCAAA
* * * *
149676 ACCTCTCTT-AGGATACTTCATCGAAAATCTT-CAAA
1 GCCTTTCTTGAGGATATTTCATC-AAAAACTTCCAAA
* * * *
149711 GGCTTTCTTAAAGACATTTCATCAAAAACTTCCAAA
1 GCCTTTCTTGAGGATATTTCATCAAAAACTTCCAAA
*
149747 GCCTCTCTTGAGGATATTTCATCAAAAACTTCCAAA
1 GCCTTTCTTGAGGATATTTCATCAAAAACTTCCAAA
* * *
149783 GCCTCTT-TTAAGGATACTTCATCAAAAACTTCTAAA
1 GCCT-TTCTTGAGGATATTTCATCAAAAACTTCCAAA
* * * *
149819 GCTTTTCTTGAGGACATTTCATCAAAAAATTTCAAA
1 GCCTTTCTTGAGGATATTTCATCAAAAACTTCCAAA
* * * *
149855 GCCTTTCGTGAGGACATTTCATTAAAAAAAATTCCAAA
1 GCCTTTCTTGAGGATATTTCA-T-CAAAAACTTCCAAA
* * *
149893 G--TTTCTTTTAAGGATATTTTATCAAAAACTTCCAAT
1 GCCTTTC--TTGAGGATATTTCATCAAAAACTTCCAAA
* * * *
149929 GCCTCTT-TTAAAGACATTTAATCAAAAACTTCCAAA
1 GCCT-TTCTTGAGGATATTTCATCAAAAACTTCCAAA
* * * * * * * *
149965 ACCTCTCTTAAAGATGTTTCATTAAAAATTTTCAAA
1 GCCTTTCTTGAGGATATTTCATCAAAAACTTCCAAA
**
150001 GCCTCTT-TTGAAAATATTTCA
1 GCCT-TTCTTGAGGATATTTCA
150022 AAAACCTCGA
Statistics
Matches: 333, Mismatches: 67, Indels: 38
0.76 0.15 0.09
Matches are distributed among these distances:
34 12 0.04
35 30 0.09
36 231 0.69
37 8 0.02
38 48 0.14
39 4 0.01
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (36 bp):
GCCTTTCTTGAGGATATTTCATCAAAAACTTCCAAA
Found at i:149804 original size:72 final size:72
Alignment explanation
Indices: 149577--150154 Score: 381
Period size: 72 Copynumber: 8.1 Consensus size: 72
149567 GCCTTTCTTG
* ** * * * *
149577 AGGATACTTCATCAAAAGTTTCCAAAGCCTTTCTTGAGGACATTTCATCAAAAAATATTCCAAAG
1 AGGATATTTCATCAAAAACTTCCAAAGCCTCTCTTAAGGATATTTCATC-AAAAA-CTTCCAAAG
* * *
149642 CATATTTTG
64 CCTCTTTTA
* * * * * *
149651 AGGATATTTCAGC-AAAACCTCCAAAACCTCTCTT-AGGATACTTCATCGAAAATCTT-CAAAGG
1 AGGATATTTCATCAAAAACTTCCAAAGCCTCTCTTAAGGATATTTCATC-AAAAACTTCCAAAGC
149713 CT-TTCTTA
65 CTCTT-TTA
* * *
149721 AAGACATTTCATCAAAAACTTCCAAAGCCTCTCTTGAGGATATTTCATCAAAAACTTCCAAAGCC
1 AGGATATTTCATCAAAAACTTCCAAAGCCTCTCTTAAGGATATTTCATCAAAAACTTCCAAAGCC
149786 TCTTTTA
66 TCTTTTA
* * * * * * * *
149793 AGGATACTTCATCAAAAACTTCTAAAGCTTTTCTTGAGGACATTTCATCAAAAAATTTCAAAGCC
1 AGGATATTTCATCAAAAACTTCCAAAGCCTCTCTTAAGGATATTTCATCAAAAACTTCCAAAGCC
* *
149858 T-TTCGTG
66 TCTT-TTA
* * * ** * * *
149865 AGGACATTTCATTAAAAAAAATTCCAAAGTTTCTTTTAAGGATATTTTATCAAAAACTTCCAATG
1 AGGATATTTCA-T-CAAAAACTTCCAAAGCCTCTCTTAAGGATATTTCATCAAAAACTTCCAAAG
149930 CCTCTTTTA
64 CCTCTTTTA
* * * * * * * * *
149939 AAGACATTTAATCAAAAACTTCCAAAACCTCTCTTAAAGATGTTTCATTAAAAATTTTCAAAGCC
1 AGGATATTTCATCAAAAACTTCCAAAGCCTCTCTTAAGGATATTTCATCAAAAACTTCCAAAGCC
150004 TCTTTTGA
66 TCTTTT-A
* * * * * * * * * *
150012 A-AATA-TT--TCAAAAACCTCGAAAG-TTATTCTCAAGGATATTT-ATCAGATA-TTTCAAAGG
1 AGGATATTTCATCAAAAACTTCCAAAGCCT-CTCTTAAGGATATTTCATCAAAAACTTCCAAAGC
150070 CTCTTTTA
65 CTCTTTTA
* * * * * * * * * * *
150078 AGGACATTTTATCACATACTTCCAAAGCTTTTCATAAGGATAGTCCATCAAAAACCTCCAAAACC
1 AGGATATTTCATCAAAAACTTCCAAAGCCTCTCTTAAGGATATTTCATCAAAAACTTCCAAAGCC
150143 TC-TTTA
66 TCTTTTA
150149 AGGATA
1 AGGATA
150155 CTTAACAAAG
Statistics
Matches: 390, Mismatches: 96, Indels: 39
0.74 0.18 0.07
Matches are distributed among these distances:
66 2 0.01
67 17 0.04
68 8 0.02
69 26 0.07
70 41 0.11
71 49 0.13
72 160 0.41
73 22 0.06
74 63 0.16
75 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (72 bp):
AGGATATTTCATCAAAAACTTCCAAAGCCTCTCTTAAGGATATTTCATCAAAAACTTCCAAAGCC
TCTTTTA
Found at i:149876 original size:108 final size:106
Alignment explanation
Indices: 149577--150009 Score: 397
Period size: 108 Copynumber: 4.0 Consensus size: 106
149567 GCCTTTCTTG
**
149577 AGGATACTTCATCAAAAGTTTCCAAAGCCTTTCTTGAGGACATTTCATCAAAAAATATTCCAAAG
1 AGGATACTTCATCAAAAACTT-CAAAG-CTTTCTTGAGGACATTTCATCAAAAAAT-TT-CAAAG
* * * * *
149642 CATATT-TTGAGGATATTTCAGC-AAAACCTCCAAAACCTCTCTT-
62 CCT-TTCTTGAGGATATTTCATCAAAAACTTCCAAAGCCTCTTTTA
* * * * *
149685 AGGATACTTCATCGAAAATCTTCAAAGGCTTTCTTAAAGACATTTCATCAAAAACTTCCAAAGCC
1 AGGATACTTCATC-AAAAACTTCAAA-GCTTTCTTGAGGACATTTCATCAAAAAATTTCAAAGCC
*
149750 TCTCTTGAGGATATTTCATCAAAAACTTCCAAAGCCTCTTTTA
64 TTTCTTGAGGATATTTCATCAAAAACTTCCAAAGCCTCTTTTA
149793 AGGATACTTCATCAAAAACTTCTAAAGCTTTTCTTGAGGACATTTCATCAAAAAATTTCAAAGCC
1 AGGATACTTCATCAAAAACTTC-AAAGC-TTTCTTGAGGACATTTCATCAAAAAATTTCAAAGCC
* * * * **
149858 TTTCGTGAGGACATTTCATTAAAAAAAATTCCAAAGTTTCTTTTA
64 TTTCTTGAGGATATTTCA-T-CAAAAACTTCCAAAGCCTCTTTTA
* * * * * * * * *
149903 AGGATATTTTATCAAAAACTTCCAATGCCTCTT-TTAAAGACATTTAATCAAAAACTTCCAAAAC
1 AGGATACTTCATCAAAAACTT-CAAAG-CT-TTCTTGAGGACATTTCATCAAAAAATTTCAAAGC
* * * * * * *
149967 CTCTCTTAAAGATGTTTCATTAAAAATTTTCAAAGCCTCTTTT
63 CTTTCTTGAGGATATTTCATCAAAAACTTCCAAAGCCTCTTTT
150010 GAAAATATTT
Statistics
Matches: 269, Mismatches: 44, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
105 1 0.00
106 22 0.08
107 29 0.11
108 123 0.46
109 9 0.03
110 81 0.30
111 4 0.01
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (106 bp):
AGGATACTTCATCAAAAACTTCAAAGCTTTCTTGAGGACATTTCATCAAAAAATTTCAAAGCCTT
TCTTGAGGATATTTCATCAAAAACTTCCAAAGCCTCTTTTA
Found at i:149985 original size:146 final size:143
Alignment explanation
Indices: 149596--150004 Score: 381
Period size: 146 Copynumber: 2.8 Consensus size: 143
149586 CATCAAAAGT
* * * * * * * * * * *
149596 TTCCAAAGCCTTTCTTGAGGACATTTCATCAAAAAATATTCCAAAGCATATTTTGAGGATATTTC
1 TTCCAAAGCCTCTCTTAAGGATATTTCATC-AAAAA-CTTCCAAAGCCTCTTTTAAAGACACTTA
* * * * * *
149661 AGC-AAAACCTCCAAAACCTCTCTTAGGATACTTCATC-GAAAATCTTCAAAGGCTTTCTTAAAG
64 ATCAAAAACTTCCAAAACCTCTCTTAGGATATTTCATCAAAAAAT-TTCAAAGCCTTTCGTAAAG
* *
149724 ACATTTCATCAAAAAC
128 ACATTTCATAAAAAAA
* * * *
149740 TTCCAAAGCCTCTCTTGAGGATATTTCATCAAAAACTTCCAAAGCCTCTTTTAAGGATACTTCAT
1 TTCCAAAGCCTCTCTTAAGGATATTTCATCAAAAACTTCCAAAGCCTCTTTTAAAGACACTTAAT
* * * * * * *
149805 CAAAAACTTCTAAAGCTTTTCTTGAGGACATTTCATCAAAAAATTTCAAAGCCTTTCGTGAGGAC
66 CAAAAACTTCCAAAACCTCTCTT-AGGATATTTCATCAAAAAATTTCAAAGCCTTTCGTAAAGAC
149870 ATTTCATTAAAAAAAA
130 ATTTCA-T-AAAAAAA
** * * * *
149886 TTCCAAAGTTTCTTTTAAGGATATTTTATCAAAAACTTCCAATGCCTCTTTTAAAGACATTTAAT
1 TTCCAAAGCCTCTCTTAAGGATATTTCATCAAAAACTTCCAAAGCCTCTTTTAAAGACACTTAAT
* * * *
149951 CAAAAACTTCCAAAACCTCTCTTAAAGATGTTTCATTAAAAATTTTCAAAGCCT
66 CAAAAACTTCCAAAACCTCTCTT-AGGATATTTCATCAAAAAATTTCAAAGCCT
150005 CTTTTGAAAA
Statistics
Matches: 218, Mismatches: 42, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
142 25 0.11
143 21 0.10
144 62 0.28
145 6 0.03
146 104 0.48
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.33
Consensus pattern (143 bp):
TTCCAAAGCCTCTCTTAAGGATATTTCATCAAAAACTTCCAAAGCCTCTTTTAAAGACACTTAAT
CAAAAACTTCCAAAACCTCTCTTAGGATATTTCATCAAAAAATTTCAAAGCCTTTCGTAAAGACA
TTTCATAAAAAAA
Found at i:152274 original size:157 final size:157
Alignment explanation
Indices: 152066--152365 Score: 415
Period size: 157 Copynumber: 1.9 Consensus size: 157
152056 CCCCTAGAGG
* * *
152066 ATACCTTCGACGTAAAAGTATCTGATACCCCTAAAAGACTTAAAAATGATTTTAAATTGGATGAA
1 ATACCTTCGACGTAAAAGTACCTGATACCCCTAAAAAACTTAAAAATGATTTTAAATGGGATGAA
* * * * * * *
152131 ACTACCCTAAATACCCACCTTCGGTATAAAAGCGGACTTGGTGATAACCTAGGACTCAGTTCTAG
66 ACTACCCTAAATACCCACCTTCAGCATAAAAGCAGACCTGGTGACAACCTAAGACTCAGTTCTAA
*
152196 AGAAATTATAAAATTGTCCCTAAGGAA
131 AGAAATTACAAAATTGTCCCTAAGGAA
* *
152223 ATACTTTCGACGTAAAAGTACCCT-ATACCTCTAAAAAACTTGAAAAA-GATTTTAAATGGGATG
1 ATACCTTCGACGTAAAAGTA-CCTGATACCCCTAAAAAACTT-AAAAATGATTTTAAATGGGATG
* * * *
152286 AACCTACCCTAAATACCCACTTTTAGCATAAAAGCAGACCTGGTGACAACCTAAGACTCGGTTCT
64 AAACTACCCTAAATACCCACCTTCAGCATAAAAGCAGACCTGGTGACAACCTAAGACTCAGTTCT
152351 AAAGAAATTACAAAA
129 AAAGAAATTACAAAA
152366 ATACCTTTAG
Statistics
Matches: 124, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
157 117 0.94
158 7 0.06
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.26
Consensus pattern (157 bp):
ATACCTTCGACGTAAAAGTACCTGATACCCCTAAAAAACTTAAAAATGATTTTAAATGGGATGAA
ACTACCCTAAATACCCACCTTCAGCATAAAAGCAGACCTGGTGACAACCTAAGACTCAGTTCTAA
AGAAATTACAAAATTGTCCCTAAGGAA
Found at i:152889 original size:151 final size:151
Alignment explanation
Indices: 152684--153374 Score: 795
Period size: 151 Copynumber: 4.6 Consensus size: 151
152674 CTTAATTCTT
* * * * * * *
152684 AAAAAATCATTTCGTACC-TGACGTAAAACC-AGAGGATATGAAAAGTTTTAAAAATTTCTATAC
1 AAAAATTCATTTCGTACCTTAATGGAAAACCAAAAAGATACGAAAAGTTTTAAAAATTTCTATAC
*
152747 CTCTACGGATACCCATAGGAAAATTAAAAATTTCAAAAAATTGGGATAATAATTTTTATTTAGTT
66 C-CTACGGATACCCATAGGAATATTAAAAATTTCAAAAAATTGGGATAATAATTTTTATTTAGTT
* *
152812 TTTATTTGATTTTTAATTTCCA
130 TTTATTTGATTTTTAATTTTCG
* ** *
152834 AAAAATTCATTTCATA-CTTAATGGAAAACCAAAAAGATATAAAAAGTTTTGAAAATTT-TCATA
1 AAAAATTCATTTCGTACCTTAATGGAAAACCAAAAAGATACGAAAAGTTTTAAAAATTTCT-ATA
* * * * *
152897 CCTCTACAGATACTCATAGGAATATTAGAAATTTCGAAAAATTGAGATAATAATTTTTATTTAGT
65 CC-CTACGGATACCCATAGGAATATTAAAAATTTCAAAAAATTGGGATAATAATTTTTATTTAGT
*
152962 TTTTATTTGATTTTTGATTTTCG
129 TTTTATTTGATTTTTAATTTTCG
* * * *
152985 AAAAATTCATTTCGTACCTTAATGGAAAA-TAGAAAAGACACAAAAAATTTTAAAAATTT-TCAT
1 AAAAATTCATTTCGTACCTTAATGGAAAACCA-AAAAGATACGAAAAGTTTTAAAAATTTCT-AT
* ** * *
153048 ACCCTACGGATACCCATAGGAATATTAGAAATTTTGAAAAATGGGGACAATAATTTTTATTTAGT
64 ACCCTACGGATACCCATAGGAATATTAAAAATTTCAAAAAATTGGGATAATAATTTTTATTTAGT
* ** *
153113 TTTTATTTAATTTTTGGTTTTTG
129 TTTTATTTGATTTTTAATTTTCG
* * * *
153136 AAAAATTCATTTTGTACCCTAATGGGAAACCAAAAAGATACGAAAAGTTTTGAAAATTTCTATAC
1 AAAAATTCATTTCGTACCTTAATGGAAAACCAAAAAGATACGAAAAGTTTTAAAAATTTCTATA-
* ** * * *
153201 CCCTCCAAATACCCACAAGAATATTAAAAATTTTAAAAAATTGGGATAATAATTTTTATTTAGTT
65 CCCTACGGATACCCATAGGAATATTAAAAATTTCAAAAAATTGGGATAATAATTTTTATTTAGTT
153266 TTTATTTGATTTTTAATTTTC-
130 TTTATTTGATTTTTAATTTTCG
*** * *
153287 AAAAATTCATTTCGTA-CTTGAATGGAAAATTGAAAAGATACGAAAAGTTTTTAATATTTCTATA
1 AAAAATTCATTTCGTACCTT-AATGGAAAACCAAAAAGATACGAAAAGTTTTAAAAATTTCTATA
* * *
153351 CCCTTACGGACAACCATAAGAATA
65 CCC-TACGGATACCCATAGGAATA
153375 ATAGAAATAT
Statistics
Matches: 463, Mismatches: 68, Indels: 19
0.84 0.12 0.03
Matches are distributed among these distances:
149 1 0.00
150 29 0.06
151 316 0.68
152 117 0.25
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (151 bp):
AAAAATTCATTTCGTACCTTAATGGAAAACCAAAAAGATACGAAAAGTTTTAAAAATTTCTATAC
CCTACGGATACCCATAGGAATATTAAAAATTTCAAAAAATTGGGATAATAATTTTTATTTAGTTT
TTATTTGATTTTTAATTTTCG
Found at i:153117 original size:11 final size:11
Alignment explanation
Indices: 153098--153127 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
153088 ATGGGGACAA
153098 TAATTTTTATT
1 TAATTTTTATT
*
153109 TAGTTTTTATT
1 TAATTTTTATT
153120 TAATTTTT
1 TAATTTTT
153128 GGTTTTTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (11 bp):
TAATTTTTATT
Found at i:153276 original size:303 final size:301
Alignment explanation
Indices: 152724--153382 Score: 883
Period size: 303 Copynumber: 2.2 Consensus size: 301
152714 AGAGGATATG
* * *
152724 AAAAGTTTTAAAAATTTCTATACCTCTACGGATACCCATAGGAAAATTAAAAATTTCAAAAAATT
1 AAAAGTTTTAAAAATTTCTATACC-CTACGGATACCCATAGGAATATTAGAAATTTCAAAAAATG
* * *
152789 GGGATAATAATTTTTATTTAGTTTTTATTTGATTTTTAATTTCCAAAAAATTCATTTCATACTTA
65 GGGACAATAATTTTTATTTAGTTTTTATTTAATTTTTAATTTCCAAAAAATTCATTTCATACCTA
* * * * * *
152854 ATGGAAAACCAAAAAGATATAAAAAGTTTTGAAAATTTTCATACCTCTACAGATACTCATAGGAA
130 ATGGAAAACCAAAAAGATACAAAAAGTTTTGAAAATTTTCATACCCCTACAAATACCCACAAGAA
* * *
152919 TATTAGAAATTTCGAAAAATTGAGATAATAATTTTTATTTAGTTTTTATTTGATTTTTGATTTTC
195 TATTAAAAATTTCAAAAAATTGAGATAATAATTTTTATTTAGTTTTTATTTGATTTTTAATTTTC
152984 GAAAAATTCATTTCGTACCTT-AATGGAAAATAGAAAAGACACA
260 -AAAAATTCATTTCGTA-CTTGAATGGAAAATAGAAAAGACACA
* **
153027 AAAAATTTTAAAAATTT-TCATACCCTACGGATACCCATAGGAATATTAGAAATTTTGAAAAATG
1 AAAAGTTTTAAAAATTTCT-ATACCCTACGGATACCCATAGGAATATTAGAAATTTCAAAAAATG
** *** **
153091 GGGACAATAATTTTTATTTAGTTTTTATTTAATTTTTGGTTTTTGAAAAATTCATTTTGTACCCT
65 GGGACAATAATTTTTATTTAGTTTTTATTTAATTTTTAATTTCCAAAAAATTCATTTCATA-CCT
* * *
153156 AATGGGAAACCAAAAAGATACGAAAAGTTTTGAAAA-TTTCTATACCCCTCCAAATACCCACAAG
129 AATGGAAAACCAAAAAGATACAAAAAGTTTTGAAAATTTTC-ATACCCCTACAAATACCCACAAG
* *
153220 AATATTAAAAATTTTAAAAAATTGGGATAATAATTTTTATTTAGTTTTTATTTGATTTTTAATTT
193 AATATTAAAAATTTCAAAAAATTGAGATAATAATTTTTATTTAGTTTTTATTTGATTTTTAATTT
* * *
153285 TCAAAAATTCATTTCGTACTTGAATGGAAAATTGAAAAGATACG
258 TCAAAAATTCATTTCGTACTTGAATGGAAAATAGAAAAGACACA
* * * * * *
153329 AAAAGTTTTTAATATTTCTATACCCTTACGGACAACCATAAGAATAATAGAAAT
1 AAAAGTTTTAAAAATTTCTATACCC-TACGGATACCCATAGGAATATTAGAAAT
153383 ATATAAAAAT
Statistics
Matches: 310, Mismatches: 40, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
301 3 0.01
302 147 0.47
303 160 0.52
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.38
Consensus pattern (301 bp):
AAAAGTTTTAAAAATTTCTATACCCTACGGATACCCATAGGAATATTAGAAATTTCAAAAAATGG
GGACAATAATTTTTATTTAGTTTTTATTTAATTTTTAATTTCCAAAAAATTCATTTCATACCTAA
TGGAAAACCAAAAAGATACAAAAAGTTTTGAAAATTTTCATACCCCTACAAATACCCACAAGAAT
ATTAAAAATTTCAAAAAATTGAGATAATAATTTTTATTTAGTTTTTATTTGATTTTTAATTTTCA
AAAATTCATTTCGTACTTGAATGGAAAATAGAAAAGACACA
Found at i:154850 original size:167 final size:164
Alignment explanation
Indices: 154532--155365 Score: 857
Period size: 167 Copynumber: 5.1 Consensus size: 164
154522 ATGGGAGTTT
* * ** ** *
154532 AATAACAATATTAGATGAATTTTAAAAATTTTAAACCGAGAAAAATCCCCCCCAAAACATTTATG
1 AATAATAATATTTGATGAATTTT-AAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATG
* * * * * * *
154597 GAATAAAAAACT-TGATTTTTTAAAAATAAGGAAATTTCAAAGAAAAAATTCAAAACTCATGAAA
65 GAGTAGAAAACTCCG-TATTTTAGAAACAAGAAAATTTCAAAGAAAAAA-TCAAAACTCATGAAA
* * *
154661 AT-ATATTAATTTTTAGAAACTAATTTAATATGAATTA
128 ATGA-ATGAATTTTTAAAAACTAATTTAATATAAATTA
* * * * *
154698 AATAATAATATTTTATGAATTTTAAAAGTTCAAAACCAAGAAAAATCCCCCCCGAAAGCATTTTT
1 AATAATAATATTTGATGAATTTTAAAA-TTAAAAACTAAGAAAAAT-CCCCCCGAAAACATTTAT
* * * *
154763 GGAGAAGAAAACTCCGTATTTTGGAACCAAGAAAATTTCAAAGAAGAAAATCAAAAATCATGAAA
64 GGAGTAGAAAACTCCGTATTTTAGAAACAAGAAAATTTCAAAGAA-AAAATCAAAACTCATGAAA
*
154828 ATGAATGAATATTTAAAAACTAATTTAATATAAATTA
128 ATGAATGAATTTTTAAAAACTAATTTAATATAAATTA
* * *
154865 AATAATAATATTTCATGAATTTTGAAAATTAAAAACTAAGAAAAATTCCCCTGAAAACATTTATG
1 AATAATAATATTTGATGAATTTT-AAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATG
* * * * * * * *
154930 GAGTAGAAAACTTCATATTTTAAAAATAGGAAAATTTTAAA-AAAAATTCAAAACTAATGAAAAT
65 GAGTAGAAAACTCCGTATTTTAGAAACAAGAAAATTTCAAAGAAAAAATCAAAACTCATGAAAAT
* ** * *
154994 GAATGAATTTTTGAAAGTTGATTTAATATGAATTA
130 GAATGAATTTTTAAAAACTAATTTAATATAAATTA
* *
155029 AATAATAATATTTGATGAAATTTAAAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATA
1 AATAATAATATTTGATG-AATTTTAAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATG
*
155094 GAGTAGAAAACTCCGTATTTT-GAAA-AA-AAAA-TTCCAAGAAAAAATTCAAAACTCATG--AA
65 GAGTAGAAAACTCCGTATTTTAGAAACAAGAAAATTTCAAAGAAAAAA-TCAAAACTCATGAAAA
* * *
155153 TGAATGAATTTTTGAAAAGTGATTTAATATAAATTA
129 TGAATGAATTTTTAAAAACTAATTTAATATAAATTA
* * * **
155189 AATAATAATATTTTATGAATTTTAAAATTAAAAACTAAGAAAAGTCCTCCCGAAAACATTTATAA
1 AATAATAATATTTGATGAATTTTAAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATGG
* * * *
155254 AGTAGAAAACTCCATATTTTAGAAAC-AGAAAAAATTCTAAA-AGAAAATCAATAACTTAT-AAA
66 AGTAGAAAACTCCGTATTTTAGAAACAAG-AAAATTTC-AAAGAAAAAATCAA-AACTCATGAAA
* * * * *
155316 ATAAAAAGAATTTTTCAAAACTGATTTGATGAT-AATTA
128 AT-GAATGAATTTTTAAAAACTAATTTAAT-ATAAATTA
* *
155354 AATGATGATATT
1 AATAATAATATT
155366 AAAAGAATTG
Statistics
Matches: 567, Mismatches: 81, Indels: 41
0.82 0.12 0.06
Matches are distributed among these distances:
159 63 0.11
160 60 0.11
161 9 0.02
162 20 0.04
163 17 0.03
164 125 0.22
165 48 0.08
166 84 0.15
167 131 0.23
168 10 0.02
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.30
Consensus pattern (164 bp):
AATAATAATATTTGATGAATTTTAAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATGG
AGTAGAAAACTCCGTATTTTAGAAACAAGAAAATTTCAAAGAAAAAATCAAAACTCATGAAAATG
AATGAATTTTTAAAAACTAATTTAATATAAATTA
Found at i:155030 original size:164 final size:163
Alignment explanation
Indices: 154532--155317 Score: 838
Period size: 164 Copynumber: 4.8 Consensus size: 163
154522 ATGGGAGTTT
* * ** ** *
154532 AATAACAATATTAGATGAATTTTAAAAATTTTAAACCGAGAAAAATCCCCCCCAAAACATTTATG
1 AATAATAATATTTGATGAATTTT-AAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATG
* * ** * *
154597 GAATAAAAAACTTGATTTTTTAAAAATAAGG-AAATTTCAAAGAAAAAATTCAAAACTCATGAAA
65 GAGTAGAAAACTCCATATTTTAAAAA-CAGGAAAATTTC-AA-AAAAAATTCAAAACTCATGAAA
* *
154661 AT-ATATTAATTTTTAGAAA-CTAATTTAATATGAATTA
127 ATGA-ATGAATTTTT-GAAAGCTAATTTAATATAAATTA
* * * * *
154698 AATAATAATATTTTATGAATTTTAAAAGTTCAAAACCAAGAAAAATCCCCCCCGAAAGCATTTTT
1 AATAATAATATTTGATGAATTTTAAAA-TTAAAAACTAAGAAAAAT-CCCCCCGAAAACATTTAT
* * ** * * * *
154763 GGAGAAGAAAACTCCGTATTTTGGAACCAAGAAAATTTCAAAGAAGAAAATCAAAAATCATGAAA
64 GGAGTAGAAAACTCCATATTTTAAAAACAGGAAAATTTCAAA-AA-AAATTCAAAACTCATGAAA
* * *
154828 ATGAATGAATATTTAAAAACTAATTTAATATAAATTA
127 ATGAATGAATTTTTGAAAGCTAATTTAATATAAATTA
* * *
154865 AATAATAATATTTCATGAATTTTGAAAATTAAAAACTAAGAAAAATTCCCCTGAAAACATTTATG
1 AATAATAATATTTGATGAATTTT-AAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATG
* * * *
154930 GAGTAGAAAACTTCATATTTTAAAAATAGGAAAATTTTAAAAAAAATTCAAAACTAATGAAAATG
65 GAGTAGAAAACTCCATATTTTAAAAACAGGAAAATTTCAAAAAAAATTCAAAACTCATGAAAATG
* * *
154995 AATGAATTTTTGAAAGTTGATTTAATATGAATTA
130 AATGAATTTTTGAAAGCTAATTTAATATAAATTA
* *
155029 AATAATAATATTTGATGAAATTTAAAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATA
1 AATAATAATATTTGATG-AATTTTAAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATG
* * *
155094 GAGTAGAAAACTCCGTATTTTGAAAA-A--AAAATTCCAAGAAAAAATTCAAAACTCATG--AAT
65 GAGTAGAAAACTCCATATTTTAAAAACAGGAAAATTTCAA-AAAAAATTCAAAACTCATGAAAAT
*
155154 GAATGAATTTTTGAAAAG-TGATTTAATATAAATTA
129 GAATGAATTTTTG-AAAGCTAATTTAATATAAATTA
* * * **
155189 AATAATAATATTTTATGAATTTTAAAATTAAAAACTAAGAAAAGTCCTCCCGAAAACATTTATAA
1 AATAATAATATTTGATGAATTTTAAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATGG
* * * *
155254 AGTAGAAAACTCCATATTTTAGAAACAGAAAAAATTCTAAAAGAAAA-TCAATAACTTAT-AAAA
66 AGTAGAAAACTCCATATTTTAAAAACAGGAAAATTTC-AAAA-AAAATTCAA-AACTCATGAAAA
155317 T
128 T
155318 AAAAAGAATT
Statistics
Matches: 526, Mismatches: 75, Indels: 40
0.82 0.12 0.06
Matches are distributed among these distances:
159 66 0.13
160 49 0.09
161 12 0.02
162 30 0.06
163 13 0.02
164 127 0.24
165 12 0.02
166 91 0.17
167 121 0.23
168 5 0.01
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.30
Consensus pattern (163 bp):
AATAATAATATTTGATGAATTTTAAAATTAAAAACTAAGAAAAATCCCCCCGAAAACATTTATGG
AGTAGAAAACTCCATATTTTAAAAACAGGAAAATTTCAAAAAAAATTCAAAACTCATGAAAATGA
ATGAATTTTTGAAAGCTAATTTAATATAAATTA
Found at i:156795 original size:108 final size:110
Alignment explanation
Indices: 156439--156890 Score: 375
Period size: 110 Copynumber: 4.0 Consensus size: 110
156429 AGATAAGATT
* *
156439 ATAAATTATTTAATTTAAGG-CAGGTCTTATTAAAATATATATTAGATAAAATAAGT-CCACATG
1 ATAAATTA-TTAA-TTAAGGCCAAGTCTTA-TAAAATAAATATTAGATAAAATAAGTCCCACATG
* * * *
156502 TTTATTTAATTGATTTATTTGTGGCCTATCTTATTTAATTATATTGGATC
63 CTTATTTAATTAATTTA-TT-TGGCCTATTTTATTTAATTATATTGGGTC
* * * * * *
156552 ATAAATTATTTAATTTAAAGCCAAGTCTGATAAAA-AAA-ATCAGATAAAACAAGTCCTACGTGC
1 ATAAATTA-TTAA-TTAAGGCCAAGTCTTATAAAATAAATATTAGATAAAATAAGTCCCACATGC
* * * **
156615 GTATTTAATTAATTAATTTATGCCTA-TTTATTTAATTATATTATGTC
64 TTATTTAATTAATTTATTT-GGCCTATTTTATTTAATTATATTGGGTC
* * *
156662 ATAAATTATTTAATTTAAGACCAAGTCTTATAAAATAAATATTAAATAAAAT-AGATCCCATATG
1 ATAAATTA-TTAA-TTAAGGCCAAGTCTTATAAAATAAATATTAGATAAAATAAG-TCCCACATG
156726 CTTATTTAATTAATTTATTTGGACCTATTTTATTTAATTATATTGGGTC
63 CTTATTTAATTAATTTATTTGG-CCTATTTTATTTAATTATATTGGGTC
* * * *
156775 ATAAATTA-T-A-TAAGGTCAAGTCTTATAAAAAATATACTTACATTAGATAAAACAAGGCCTC-
1 ATAAATTATTAATTAAGGCCAAGTCTTAT--AAAATA-A---ATATTAGATAAAATAAGTCC-CA
** * * * *
156836 TGTGCATATTTAGTTAATTTGTTTATGGCCTATTTTATTTAATTATGTTGGGTC
59 CATGCTTATTTAATTAATTT-ATT-TGGCCTATTTTATTTAATTATATTGGGTC
156890 A
1 A
156891 ATTTCATATC
Statistics
Matches: 279, Mismatches: 42, Indels: 34
0.79 0.12 0.10
Matches are distributed among these distances:
108 14 0.05
110 57 0.20
111 29 0.10
112 57 0.20
113 51 0.18
114 37 0.13
115 31 0.11
116 3 0.01
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.42
Consensus pattern (110 bp):
ATAAATTATTAATTAAGGCCAAGTCTTATAAAATAAATATTAGATAAAATAAGTCCCACATGCTT
ATTTAATTAATTTATTTGGCCTATTTTATTTAATTATATTGGGTC
Found at i:156883 original size:223 final size:220
Alignment explanation
Indices: 156439--156881 Score: 513
Period size: 223 Copynumber: 2.0 Consensus size: 220
156429 AGATAAGATT
* * * * *
156439 ATAAATTATTTAATTTAAGGCAGGTCTTATTAAAATATATATTAGATAAAATAAGTCCACATGTT
1 ATAAATTATTTAATTTAAGCCAAGTCTTATTAAAATAAATATTAAATAAAATAAGTCCACATGCT
* *
156504 TATTTAATTGATTTATTTGTGGCCTATCTTATTTAATTATATTGGATCATAAATTATTTAATTTA
66 TATTTAATTAATTTATTTGTGACCTATCTTATTTAATTATATTGGATCATAAATTA-TTAA-TTA
* *
156569 AAGCCAAGTCTGATAAAAAAAATCAGATAAAACAAGTCCTACGTGCGTATTTAATTAATTAATTT
129 AAGCCAAGTCTGATAAAAAAAATCAGATAAAACAAGGCCTACGTGCATATTTAATTAATTAATTT
156634 ATGCCTATTTATTTAATTATATTATGTC
194 ATGCCTA-TTATTTAATTATATTATGTC
*
156662 ATAAATTATTTAATTTAAGACCAAGTCTTA-TAAAATAAATATTAAATAAAAT-AGATCCCATAT
1 ATAAATTATTTAATTTAAG-CCAAGTCTTATTAAAATAAATATTAAATAAAATAAG-T-CCACAT
* *
156725 GCTTATTTAATTAATTTATTTG-GACCTATTTTATTTAATTATATTGGGTCATAAATTA-T-A-T
63 GCTTATTTAATTAATTTATTTGTGACCTATCTTATTTAATTATATTGGATCATAAATTATTAATT
* * * *
156786 AAGGTCAAGTCTTATAAAAAATATACTTACATTAGATAAAACAAGGCCT-CTGTGCATATTTAGT
128 AAAGCCAAGTCTGATAAAAAA-A-A--T-C---AGATAAAACAAGGCCTAC-GTGCATATTTAAT
**
156850 TAATTTGTTTATGGCCTATTTTATTTAATTAT
184 TAATTAATTTAT-GCCTA--TTATTTAATTAT
156882 GTTGGGTCAA
Statistics
Matches: 188, Mismatches: 18, Indels: 23
0.82 0.08 0.10
Matches are distributed among these distances:
218 19 0.10
219 1 0.01
220 2 0.01
221 1 0.01
222 3 0.02
223 74 0.39
224 33 0.18
225 1 0.01
226 36 0.19
227 5 0.03
228 13 0.07
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.42
Consensus pattern (220 bp):
ATAAATTATTTAATTTAAGCCAAGTCTTATTAAAATAAATATTAAATAAAATAAGTCCACATGCT
TATTTAATTAATTTATTTGTGACCTATCTTATTTAATTATATTGGATCATAAATTATTAATTAAA
GCCAAGTCTGATAAAAAAAATCAGATAAAACAAGGCCTACGTGCATATTTAATTAATTAATTTAT
GCCTATTATTTAATTATATTATGTC
Found at i:161774 original size:17 final size:17
Alignment explanation
Indices: 161749--161783 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
161739 CATATTAAGT
*
161749 ATATCCATCCATCAATG
1 ATATCCATCCATAAATG
*
161766 ATATTCATCCATAAATG
1 ATATCCATCCATAAATG
161783 A
1 A
161784 CAAAACATAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (17 bp):
ATATCCATCCATAAATG
Found at i:163656 original size:107 final size:107
Alignment explanation
Indices: 163470--163684 Score: 421
Period size: 107 Copynumber: 2.0 Consensus size: 107
163460 ACCAAATTTC
163470 TAATTTTATTTACTTAGATAATATTCTGTAAATCCAATCCTAGTTCAAATAAGGTTAATAGCAAC
1 TAATTTTATTTACTTAGATAATATTCTGTAAATCCAATCCTAGTTCAAATAAGGTTAATAGCAAC
*
163535 TTTTTGAAAAGGATAAATATGTTATAATTATCAAAAATAAAA
66 TTTTTGAAAAGGATAAACATGTTATAATTATCAAAAATAAAA
163577 TAATTTTATTTACTTAGATAATATTCTGTAAATCCAATCCTAGTTCAAATAAGGTTAATAGCAAC
1 TAATTTTATTTACTTAGATAATATTCTGTAAATCCAATCCTAGTTCAAATAAGGTTAATAGCAAC
163642 TTTTTGAAAAGGATAAACATGTTATAATTATCAAAAATAAAA
66 TTTTTGAAAAGGATAAACATGTTATAATTATCAAAAATAAAA
163684 T
1 T
163685 TAAAAATAGT
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.44, C:0.10, G:0.09, T:0.37
Consensus pattern (107 bp):
TAATTTTATTTACTTAGATAATATTCTGTAAATCCAATCCTAGTTCAAATAAGGTTAATAGCAAC
TTTTTGAAAAGGATAAACATGTTATAATTATCAAAAATAAAA
Found at i:166491 original size:21 final size:21
Alignment explanation
Indices: 166448--166492 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
166438 TTACGGTACG
** *
166448 TTGTATTGATACATGTTAGGA
1 TTGTATTGATACATGACAAGA
166469 TTGTATTGATACATGACAAGA
1 TTGTATTGATACATGACAAGA
166490 TTG
1 TTG
166493 GATGGATGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (21 bp):
TTGTATTGATACATGACAAGA
Found at i:176769 original size:21 final size:21
Alignment explanation
Indices: 176745--176798 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
176735 ATTACAGGCC
* *
176745 ACTATATCGATACATGTCAAG
1 ACTATATAGATACATGACAAG
*
176766 ACTATATAAATACATGACAAG
1 ACTATATAGATACATGACAAG
*
176787 ATTATATAGATA
1 ACTATATAGATA
176799 TAAGTTAGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (21 bp):
ACTATATAGATACATGACAAG
Found at i:178286 original size:18 final size:18
Alignment explanation
Indices: 178263--178301 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
178253 GAAGAGAATA
178263 AAATTATAA-AAAAAAAAG
1 AAATTA-AATAAAAAAAAG
*
178281 AAATTAAATAAAAAGAAG
1 AAATTAAATAAAAAAAAG
178299 AAA
1 AAA
178302 AATAATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (18 bp):
AAATTAAATAAAAAAAAG
Found at i:185080 original size:6 final size:6
Alignment explanation
Indices: 185066--185097 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
185056 GGAAAATGAA
*
185066 GATGAT GATGCT GATGCT GATGCT GATGCT GA
1 GATGCT GATGCT GATGCT GATGCT GATGCT GA
185098 AGAAGATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.22, C:0.12, G:0.34, T:0.31
Consensus pattern (6 bp):
GATGCT
Found at i:190951 original size:21 final size:21
Alignment explanation
Indices: 190926--190971 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
190916 AGACTATACG
190926 AAGGTAGATAAGATATTTACA
1 AAGGTAGATAAGATATTTACA
*
190947 AAGGTGGATAAGATATTTACA
1 AAGGTAGATAAGATATTTACA
190968 AAGG
1 AAGG
190972 ATTCATCGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.46, C:0.04, G:0.24, T:0.26
Consensus pattern (21 bp):
AAGGTAGATAAGATATTTACA
Found at i:203965 original size:24 final size:24
Alignment explanation
Indices: 203938--203983 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
203928 TGAATATAAC
* * *
203938 ATAATTTATTTTATATAGTATATT
1 ATAATATATTATATATAATATATT
203962 ATAATATATTATATATAATATA
1 ATAATATATTATATATAATATA
203984 AATCATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
ATAATATATTATATATAATATATT
Found at i:204403 original size:2 final size:2
Alignment explanation
Indices: 204376--204437 Score: 85
Period size: 2 Copynumber: 32.0 Consensus size: 2
204366 ATAATATCAT
204376 TA TA T- TA TA CTA TA T- TA TA T- TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
204416 TA TA TA TA TA TA AA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
204438 CACACATACA
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
1 3 0.06
2 49 0.91
3 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:204514 original size:2 final size:2
Alignment explanation
Indices: 204507--204538 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
204497 ATCCATTTTA
204507 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
204539 AAGTTTGGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:206381 original size:2 final size:2
Alignment explanation
Indices: 206376--206406 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
206366 ACAGAAGACG
*
206376 GA GA GA GA GA GA GA GA GA GA GA AA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
206407 GGCACACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:210605 original size:4 final size:4
Alignment explanation
Indices: 210596--210620 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
210586 TGATGACAGT
210596 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
210621 TGATGTAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:211252 original size:3 final size:3
Alignment explanation
Indices: 211244--211273 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
211234 CACAAGCACA
211244 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
211274 CAGGGCTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:212607 original size:27 final size:28
Alignment explanation
Indices: 212541--212614 Score: 71
Period size: 32 Copynumber: 2.5 Consensus size: 28
212531 ATTTTTTGTA
* *
212541 TTAAATAT-TTATATAAATTTTGATACG
1 TTAAATATATTATATAAATTTTAACACG
212568 TTAATCATTTATATTATATAAATTTTAACACG
1 TTAA--A--TATATTATATAAATTTTAACACG
212600 -TAAATATATTCATAT
1 TTAAATATATT-ATAT
212615 CATTTTATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
27 10 0.26
28 4 0.10
29 2 0.05
31 6 0.15
32 17 0.44
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (28 bp):
TTAAATATATTATATAAATTTTAACACG
Found at i:212919 original size:2 final size:2
Alignment explanation
Indices: 212912--212973 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
212902 TCTTTAAACG
212912 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
212954 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
212974 GTGCAAAGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.