Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold69
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2104606
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.31
Warning! 151874 characters in sequence are not A, C, G, or T
File 5 of 13
Found at i:842495 original size:13 final size:13
Alignment explanation
Indices: 842477--842503 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
842467 AGTAGCTTAA
842477 ATTGTATCGATAC
1 ATTGTATCGATAC
842490 ATTGTATCGATAC
1 ATTGTATCGATAC
842503 A
1 A
842504 ACATTTTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (13 bp):
ATTGTATCGATAC
Found at i:846398 original size:308 final size:304
Alignment explanation
Indices: 845840--846441 Score: 974
Period size: 308 Copynumber: 2.0 Consensus size: 304
845830 AACAAACACG
* *
845840 AACAAGTTGAGCATTGGTTGTAGGAATATCAATAGAAATATAAGGAATGTCAACTACAAAAAAAC
1 AACAAGTTGAGCATTGGTTGTAGGAATATCAATAAAAATATAAGGAATGACAACTACAAAAAAAC
*
845905 ATGCAAAATTTTCAAATATGATTTTTACCCCTTTTTTAAATAAATTTGTTTATTTTGCTTTTAAT
66 ATGCAAAATTTTCAAATATGATTTTTACCCCTTTTTTAAATAAATTTGTTTATTTTGATTTTAAT
* * * *
845970 ATTAAATATGATATTTTAAAGTAATGATATAATAACATTAATGATTGAAAATTCATAAATTAGTT
131 ATTAAAGATGATATTTTAAAGTAATGATATAATAACATCAATGATTGAAAATCCATAAAGTAGTT
846035 TCAAATATTATGAGTGAGAGCATATGAACAAGTAATGAATGAAGGGGCCAGGGATAAACAATATT
196 TCAAATATTATGAGTGAGAGCATATGAACAAGTAATGAATGAAGGGGCCAGGGATAAACAATATT
*
846100 ATAATTAGATATTAAAATTTATTATTATATTTTTTATTTTCACA
261 ATAATTAGATATTAAAATTTATTATAATATTTTTTATTTTCACA
* * * *
846144 AACAAGTTGAGCATTGGTTGTAGGAATATCAGTAAAAATATAGGGAATGACAGCTGCAAAAAAA-
1 AACAAGTTGAGCATTGGTTGTAGGAATATCAATAAAAATATAAGGAATGACAACTACAAAAAAAC
** *
846208 ATGCAAAATTTTCAAATATGATTTTTACCTTTTTTTTAAATAAATTTTTTTATTTTGATTTTAAT
66 ATGCAAAATTTTCAAATATGATTTTTACCCCTTTTTTAAATAAATTTGTTTATTTTGATTTTAAT
846273 ATTAAAGATGAT-TTTTAAAGTAATGAAAATGATATAATAACATCAATGATTGAAAATCCATAAA
131 ATTAAAGATGATATTTTAAAG---T---AATGATATAATAACATCAATGATTGAAAATCCATAAA
* * *
846337 GTAGTTTCAAATATTCTGAGTGGGAGCATATGAACAAGTAATGAATGAAGGGGCTAGGGATAAAC
190 GTAGTTTCAAATATTATGAGTGAGAGCATATGAACAAGTAATGAATGAAGGGGCCAGGGATAAAC
846402 AATATTATAATTAGATATTAAAATTTATTATAATATTTTT
255 AATATTATAATTAGATATTAAAATTTATTATAATATTTTT
846442 AATTAATATT
Statistics
Matches: 274, Mismatches: 18, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
302 8 0.03
303 72 0.26
304 58 0.21
305 1 0.00
308 135 0.49
ACGTcount: A:0.42, C:0.07, G:0.14, T:0.37
Consensus pattern (304 bp):
AACAAGTTGAGCATTGGTTGTAGGAATATCAATAAAAATATAAGGAATGACAACTACAAAAAAAC
ATGCAAAATTTTCAAATATGATTTTTACCCCTTTTTTAAATAAATTTGTTTATTTTGATTTTAAT
ATTAAAGATGATATTTTAAAGTAATGATATAATAACATCAATGATTGAAAATCCATAAAGTAGTT
TCAAATATTATGAGTGAGAGCATATGAACAAGTAATGAATGAAGGGGCCAGGGATAAACAATATT
ATAATTAGATATTAAAATTTATTATAATATTTTTTATTTTCACA
Found at i:846452 original size:25 final size:25
Alignment explanation
Indices: 846418--846467 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
846408 ATAATTAGAT
846418 ATTAAAATTTATTATAATATTTTTA
1 ATTAAAATTTATTATAATATTTTTA
* * **
846443 ATTAATATTTGTTATTTTATTTTTA
1 ATTAAAATTTATTATAATATTTTTA
846468 GGTCAAGGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (25 bp):
ATTAAAATTTATTATAATATTTTTA
Found at i:846878 original size:16 final size:16
Alignment explanation
Indices: 846798--846973 Score: 59
Period size: 16 Copynumber: 11.1 Consensus size: 16
846788 TAAAATAATT
846798 TATTTTAATAATATAA
1 TATTTTAATAATATAA
*
846814 T-TTTTAAT-AT-TTA
1 TATTTTAATAATATAA
*
846827 TATTTTGA-AATAT--
1 TATTTTAATAATATAA
** *
846840 TATTAAACATACTTATGAA
1 TATTTTA-ATA-ATAT-AA
846859 TATTTTAATAATATAA
1 TATTTTAATAATATAA
*
846875 TATTTTATTTAATAATAAA
1 TATTTTA-ATAAT-AT-AA
* * *
846894 TTATATTAATAATTTAT
1 -TATTTTAATAATATAA
* *
846911 TATTTTCATAA-AAAA
1 TATTTTAATAATATAA
* *
846926 T-TATTTAATAATTTAT
1 TAT-TTTAATAATATAA
*
846942 TATTTTCATAA-A-AA
1 TATTTTAATAATATAA
*
846956 T-TATTTAATAAAATAA
1 TAT-TTTAATAATATAA
846972 TA
1 TA
846974 ATATTATTTT
Statistics
Matches: 113, Mismatches: 27, Indels: 39
0.63 0.15 0.22
Matches are distributed among these distances:
13 8 0.07
14 20 0.18
15 19 0.17
16 34 0.30
17 9 0.08
18 6 0.05
19 11 0.10
20 6 0.05
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (16 bp):
TATTTTAATAATATAA
Found at i:846957 original size:30 final size:30
Alignment explanation
Indices: 846886--846966 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 30
846876 ATTTTATTTA
846886 ATAATAAATTATATTAATAATTTATTATTTTC
1 ATAA-AAATTAT-TTAATAATTTATTATTTTC
846918 ATAAAAAATTATTTAATAATTTATTATTTTC
1 AT-AAAAATTATTTAATAATTTATTATTTTC
846949 ATAAAAATTATTTAATAA
1 ATAAAAATTATTTAATAA
846967 AATAATAATA
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
30 16 0.33
31 21 0.44
32 9 0.19
33 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.49
Consensus pattern (30 bp):
ATAAAAATTATTTAATAATTTATTATTTTC
Found at i:846958 original size:15 final size:15
Alignment explanation
Indices: 846909--846961 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
846899 TTAATAATTT
846909 ATTATTTTCATAAAAA
1 ATTATTTTCAT-AAAA
* **
846925 ATTA-TTTAATAATTT
1 ATTATTTTCATAA-AA
846940 ATTATTTTCATAAAA
1 ATTATTTTCATAAAA
846955 ATTATTT
1 ATTATTT
846962 AATAAAATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
14 2 0.07
15 16 0.55
16 11 0.38
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTATTTTCATAAAA
Found at i:847260 original size:32 final size:34
Alignment explanation
Indices: 847216--847295 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 34
847206 AAATAGTATC
*
847216 ATATTAAGTATTATTATT-AATA-TAATATTTT-
1 ATATTAAATATTATTATTAAATATTAATATTTTA
*
847247 ATCATTAAATATTATTTTTAAAATATTAATATTTTA
1 AT-ATTAAATATTATTATT-AAATATTAATATTTTA
*
847283 ATATTAAAAATTA
1 ATATTAAATATTA
847296 ATAGTTTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
31 2 0.05
32 14 0.34
34 4 0.10
35 19 0.46
36 2 0.05
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (34 bp):
ATATTAAATATTATTATTAAATATTAATATTTTA
Found at i:847295 original size:21 final size:22
Alignment explanation
Indices: 847264--847304 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
847254 AATATTATTT
*
847264 TTAAAATATTAATATTTTAATA
1 TTAAAATATTAATAGTTTAATA
847286 TTAAAA-ATTAATAGTTTAA
1 TTAAAATATTAATAGTTTAA
847305 AGTTAGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
TTAAAATATTAATAGTTTAATA
Found at i:847336 original size:23 final size:23
Alignment explanation
Indices: 847309--847355 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
847299 GTTTAAAGTT
847309 AGTTATATTTTTTTAATATTTAA
1 AGTTATATTTTTTTAATATTTAA
847332 AGTTATATTTTTTTAATATTTAA
1 AGTTATATTTTTTTAATATTTAA
847355 A
1 A
847356 TATTTTTGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (23 bp):
AGTTATATTTTTTTAATATTTAA
Found at i:847764 original size:23 final size:23
Alignment explanation
Indices: 847718--847764 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
847708 ATTTTGTTTA
* **
847718 ATTAAATTTTGTCATTAATTTTT
1 ATTAAATTTTATCATTAAGCTTT
*
847741 ATTAAATTTTATCATTCAGCTTT
1 ATTAAATTTTATCATTAAGCTTT
847764 A
1 A
847765 ATTTTGAATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.32, C:0.09, G:0.04, T:0.55
Consensus pattern (23 bp):
ATTAAATTTTATCATTAAGCTTT
Found at i:847855 original size:21 final size:21
Alignment explanation
Indices: 847831--847872 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
847821 ATAAATTATT
847831 TTAAT-AATTAAAAATAATAAA
1 TTAATCAA-TAAAAATAATAAA
*
847852 TTAATCAATAAAAATATTAAA
1 TTAATCAATAAAAATAATAAA
847873 AATTAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
TTAATCAATAAAAATAATAAA
Found at i:848110 original size:29 final size:30
Alignment explanation
Indices: 848074--848166 Score: 102
Period size: 31 Copynumber: 3.1 Consensus size: 30
848064 TAATGTTTAG
*
848074 TAAAATT-ATCAAAAATTAAAATTGAGTGA
1 TAAAATTAATCAAAAATTAAAATTGAATGA
* * *
848103 TAAAATTAATTAAAAAATTAAAATTTAATTA
1 TAAAATTAA-TCAAAAATTAAAATTGAATGA
*
848134 TAAAATTCAATCAAATA-TAAAA-TGAATGA
1 TAAAATT-AATCAAAAATTAAAATTGAATGA
848163 TAAA
1 TAAA
848167 TTTATCTATA
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
29 16 0.30
30 6 0.11
31 29 0.55
32 2 0.04
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (30 bp):
TAAAATTAATCAAAAATTAAAATTGAATGA
Found at i:848130 original size:19 final size:18
Alignment explanation
Indices: 848103--848140 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
848093 AATTGAGTGA
848103 TAAAATTAATTAAAAAAT
1 TAAAATTAATTAAAAAAT
*
848121 TAAAATTTAATTATAAAAT
1 TAAAA-TTAATTAAAAAAT
848140 T
1 T
848141 CAATCAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTAATTAAAAAAT
Found at i:848811 original size:10 final size:10
Alignment explanation
Indices: 848796--848838 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
848786 TATTATAAAA
*
848796 TAAAAAATTT
1 TAAAAAATAT
* *
848806 TAAAAATAAAA
1 TAAAAA-ATAT
848817 TAAAAAATAT
1 TAAAAAATAT
848827 TAAAAAATAT
1 TAAAAAATAT
848837 TA
1 TA
848839 TTTATATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 20 0.74
11 7 0.26
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
TAAAAAATAT
Found at i:848816 original size:21 final size:21
Alignment explanation
Indices: 848790--848832 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
848780 TTATATTATT
*
848790 ATAAAATAAAAAATTTTAAAA
1 ATAAAATAAAAAATATTAAAA
848811 ATAAAATAAAAAATATTAAAA
1 ATAAAATAAAAAATATTAAAA
848832 A
1 A
848833 ATATTATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (21 bp):
ATAAAATAAAAAATATTAAAA
Found at i:849165 original size:14 final size:14
Alignment explanation
Indices: 849146--849189 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
849136 AATCTCAAAC
849146 AAATATATTTTAAA
1 AAATATATTTTAAA
849160 AAATAT-TTTATAAA
1 AAATATATTT-TAAA
*
849174 AAATTTATTTTAAA
1 AAATATATTTTAAA
849188 AA
1 AA
849190 TTAAAAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 3 0.11
14 21 0.78
15 3 0.11
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AAATATATTTTAAA
Found at i:850998 original size:47 final size:47
Alignment explanation
Indices: 850944--851066 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
850934 AATCACAGTT
* * *
850944 TACTTTATTAACAATTTTAAAAATATATTTTTATATTAAAATTTATA
1 TACTTTATAAATAAATTTAAAAATATATTTTTATATTAAAATTTATA
850991 TACTTTATAAATAAATTTAAAAATATATTTTTATATTAAAATTTATA
1 TACTTTATAAATAAATTTAAAAATATATTTTTATATTAAAATTTATA
*
851038 TACTCTATAAATAAATTTAAAAATATATT
1 TACTTTATAAATAAATTTAAAAATATATT
851067 ATTTTAGGCT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (47 bp):
TACTTTATAAATAAATTTAAAAATATATTTTTATATTAAAATTTATA
Found at i:851013 original size:29 final size:29
Alignment explanation
Indices: 850981--851061 Score: 76
Period size: 29 Copynumber: 3.2 Consensus size: 29
850971 TTTTTATATT
850981 AAAATTTATATACTTTATAAATAAATTTA
1 AAAATTTATATACTTTATAAATAAATTTA
851010 AAAA--TATAT--TTT-T--AT--AT-T-
1 AAAATTTATATACTTTATAAATAAATTTA
*
851028 AAAATTTATATACTCTATAAATAAATTTA
1 AAAATTTATATACTTTATAAATAAATTTA
851057 AAAAT
1 AAAAT
851062 ATATTATTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 22
0.63 0.02 0.35
Matches are distributed among these distances:
18 4 0.10
19 1 0.03
20 7 0.17
22 4 0.10
23 1 0.03
24 1 0.03
25 5 0.12
27 7 0.17
28 1 0.03
29 9 0.22
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (29 bp):
AAAATTTATATACTTTATAAATAAATTTA
Found at i:852141 original size:19 final size:20
Alignment explanation
Indices: 852094--852150 Score: 71
Period size: 19 Copynumber: 2.8 Consensus size: 20
852084 CTGCCAGTTT
852094 CATGTATCGATACAATTGTCCA
1 CATGTATCGATACAA-TG-CCA
* *
852116 TATGTATCGATACAATG-GA
1 CATGTATCGATACAATGCCA
852135 CATGTATCGATACAAT
1 CATGTATCGATACAAT
852151 ATATCGATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 16 0.50
21 2 0.06
22 14 0.44
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATGCCA
Found at i:852265 original size:20 final size:20
Alignment explanation
Indices: 852240--852291 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
852230 GTCAACCATA
852240 ATGTATCGATACAAATACCT
1 ATGTATCGATACAAATACCT
*
852260 ATGTATCGATACAGATACCT
1 ATGTATCGATACAAATACCT
852280 A-GATATCGATAC
1 ATG-TATCGATAC
852292 TTTGAAGTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 1 0.03
20 29 0.97
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (20 bp):
ATGTATCGATACAAATACCT
Found at i:853650 original size:33 final size:33
Alignment explanation
Indices: 853589--853846 Score: 189
Period size: 33 Copynumber: 7.8 Consensus size: 33
853579 CCTTTGGTGC
* * * *
853589 TTCATGCTTTGGCAAGTCAGGTAA-TTTGGGCAA
1 TTCAGGCTTTGGTAACTCAGG-AACTTTGGGTAA
* * * *
853622 TTCTGGCTTGGGCAACTCTGGAACTTTGGGTAA
1 TTCAGGCTTTGGTAACTCAGGAACTTTGGGTAA
* * * *
853655 TTCAAGCTTTGGTAACTCCGGAATTTTGGGTAC
1 TTCAGGCTTTGGTAACTCAGGAACTTTGGGTAA
* * ** *
853688 TTCAGGTTTTGGTAAGTCAACCAAC-TTCGGTAA
1 TTCAGGCTTTGGTAACTC-AGGAACTTTGGGTAA
* *
853721 TTCAGGCTTTGGTAACTCAGGAACATTAGGTAA
1 TTCAGGCTTTGGTAACTCAGGAACTTTGGGTAA
* * *
853754 TTCAGG-TTTCGGTAACTCAGGAGCTTTTGGCAA
1 TTCAGGCTTT-GGTAACTCAGGAACTTTGGGTAA
* * * * * * *
853787 TTCTGGCTTGGGCACCTCAGTAACTTTAGGCAA
1 TTCAGGCTTTGGTAACTCAGGAACTTTGGGTAA
* *
853820 TTCTGGCTTTGGTAACTCTGGAACTTT
1 TTCAGGCTTTGGTAACTCAGGAACTTT
853847 AACTTCTTCA
Statistics
Matches: 177, Mismatches: 43, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
32 9 0.05
33 164 0.93
34 4 0.02
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.34
Consensus pattern (33 bp):
TTCAGGCTTTGGTAACTCAGGAACTTTGGGTAA
Found at i:853983 original size:33 final size:33
Alignment explanation
Indices: 853946--854008 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
853936 ACTCGAGAGT
853946 TTTGGGCAATTCAGGCTTTGGCAAC-TCTGGGAC
1 TTTGGGCAATTCAGGCTTTGG-AACTTCTGGGAC
* * *
853979 TTTGGGTATTTCTGGCTTTGGAACTTCTGG
1 TTTGGGCAATTCAGGCTTTGGAACTTCTGG
854009 CAATGCAGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 3 0.12
33 23 0.88
ACGTcount: A:0.14, C:0.17, G:0.30, T:0.38
Consensus pattern (33 bp):
TTTGGGCAATTCAGGCTTTGGAACTTCTGGGAC
Found at i:854763 original size:28 final size:27
Alignment explanation
Indices: 854726--854811 Score: 86
Period size: 28 Copynumber: 3.1 Consensus size: 27
854716 TTATATTTGA
* *
854726 AAAAAATAATTAAAATATGGTATAATAT
1 AAAAAATAATTAAAATATGATA-AAAAT
854754 AAAAAATAA-TATAAATATGATAAAAAT
1 AAAAAATAATTA-AAATATGATAAAAAT
* *
854781 AATAAATATATTAAAAT-TTATAAAATAT
1 AAAAAATA-ATTAAAATATGATAAAA-AT
854809 AAA
1 AAA
854812 TTATTAACAT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
27 20 0.41
28 27 0.55
29 2 0.04
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.31
Consensus pattern (27 bp):
AAAAAATAATTAAAATATGATAAAAAT
Found at i:854770 original size:18 final size:17
Alignment explanation
Indices: 854749--854811 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 17
854739 AATATGGTAT
854749 AATATAAAAAATAATATA
1 AATATAAAAAATAATA-A
854767 AATATGATAAAAATAATAA
1 AATAT-A-AAAAATAATAA
* * *
854786 ATATATTAAAATTTATAA
1 A-ATATAAAAAATAATAA
854804 AATATAAA
1 AATATAAA
854812 TTATTAACAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 6 0.16
18 15 0.39
19 3 0.08
20 14 0.37
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
AATATAAAAAATAATAA
Found at i:859668 original size:52 final size:52
Alignment explanation
Indices: 859590--859770 Score: 317
Period size: 52 Copynumber: 3.5 Consensus size: 52
859580 CGAAATATGA
*
859590 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
*
859642 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGAGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
*
859694 AAATTTGCTTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
* *
859746 AAATTTGTCTGCATGCATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
859771 AAGATTAGCG
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 122 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
Found at i:859816 original size:21 final size:21
Alignment explanation
Indices: 859790--859848 Score: 118
Period size: 21 Copynumber: 2.8 Consensus size: 21
859780 GTATCGATAC
859790 AATGTATCGATACATTTGAGT
1 AATGTATCGATACATTTGAGT
859811 AATGTATCGATACATTTGAGT
1 AATGTATCGATACATTTGAGT
859832 AATGTATCGATACATTT
1 AATGTATCGATACATTT
859849 TTTGGCAGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (21 bp):
AATGTATCGATACATTTGAGT
Found at i:869289 original size:52 final size:51
Alignment explanation
Indices: 869204--869327 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
869194 ATATGAAAAG
* *
869204 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
*
869255 TTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAA
1 -TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
869307 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
869328 AAGATCAGTG
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 21 0.30
52 48 0.70
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
Found at i:869340 original size:51 final size:51
Alignment explanation
Indices: 869204--869347 Score: 202
Period size: 52 Copynumber: 2.8 Consensus size: 51
869194 ATATGAAAAG
*
869204 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
869256 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAA-
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
869307 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
869348 ATGTATCGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
50 2 0.02
51 34 0.40
52 48 0.57
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:869354 original size:13 final size:13
Alignment explanation
Indices: 869336--869360 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
869326 CAAAGATCAG
869336 TGTATCGATACAA
1 TGTATCGATACAA
869349 TGTATCGATACA
1 TGTATCGATACA
869361 TTTAAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:869428 original size:20 final size:19
Alignment explanation
Indices: 869399--869436 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
869389 GCAGTAGCTT
869399 AAATTGTATCGATACAAAA
1 AAATTGTATCGATACAAAA
869418 AAATATGTATCGATACAAA
1 AAAT-TGTATCGATACAAA
869437 TCGTTGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (19 bp):
AAATTGTATCGATACAAAA
Found at i:870217 original size:49 final size:49
Alignment explanation
Indices: 870158--870589 Score: 522
Period size: 49 Copynumber: 9.1 Consensus size: 49
870148 ATATGCGGCT
870158 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
*
870207 AGCGACATTGGACTT----A-AAA-GTGCCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * * *
870250 AGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * *
870299 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * *
870348 AGCTATATTGGACTTAAAGATAAAGGTGCCAATATGGTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * *
870397 AACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGAT-----AAAGG-TGCCAATGTGCTGATTCAAGGCC
870452 AGCGATATTGGACTT----A-AAA-GTGCCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * * *
870495 AGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
870544 AGCGATATTGGACTT----A-AAA-GTGCCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
870587 AGC
1 AGC
870590 TAATATGCTG
Statistics
Matches: 339, Mismatches: 26, Indels: 42
0.83 0.06 0.10
Matches are distributed among these distances:
43 99 0.29
44 6 0.02
45 5 0.01
47 2 0.01
48 4 0.01
49 184 0.54
51 1 0.00
54 5 0.01
55 33 0.10
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (49 bp):
AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
Found at i:870287 original size:92 final size:94
Alignment explanation
Indices: 870158--870589 Score: 485
Period size: 92 Copynumber: 4.5 Consensus size: 94
870148 ATATGCGGCT
870158 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-
1 AGCGATATTGGACTTAAAGAT-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
*
870222 A-AAA-GTGCCAATGTGCTGATTCAAGGCC
65 AGAAAGGTGCCAATATGCTGATTCAAGGCC
* * * *
870250 AGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
1 AGCGATATTGGACTTAAAGAT-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-
870315 AAGATAAAGGTGCCAATATGCTGATTCAAGGCC
64 AAG--AAAGGTGCCAATATGCTGATTCAAGGCC
* * * * * *
870348 AGCTATATTGGACTTAAAGATAAAGGTGCCAATATGGTGATTCAAGGCCAACGATATTGGGCTTA
1 AGCGATATTGGACTTAAAGAT-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-
* *
870413 AAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCC
64 ---A--AG--AAAGG-TGCCAATATGCTGATTCAAGGCC
*
870452 AGCGATATTGGACTT--A-A-AA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
1 AGCGATATTGGACTTAAAGATAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-A
870512 AGATGAAGGTGCCAATATGCTGATTCAAGGCC
65 AGA--AAGGTGCCAATATGCTGATTCAAGGCC
870544 AGCGATATTGGACTT--A-A-AA-GTGCCAATGTGCTGATTCAAGGCCAGC
1 AGCGATATTGGACTTAAAGATAAGGTGCCAATGTGCTGATTCAAGGCCAGC
870590 TAATATGCTG
Statistics
Matches: 297, Mismatches: 29, Indels: 28
0.84 0.08 0.08
Matches are distributed among these distances:
91 1 0.00
92 126 0.42
93 6 0.02
94 1 0.00
95 1 0.00
97 3 0.01
98 111 0.37
99 2 0.01
101 2 0.01
102 1 0.00
103 8 0.03
104 35 0.12
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (94 bp):
AGCGATATTGGACTTAAAGATAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAA
GAAAGGTGCCAATATGCTGATTCAAGGCC
Found at i:870631 original size:66 final size:66
Alignment explanation
Indices: 870525--870657 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
870515 TGAAGGTGCC
*
870525 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAAGCCAGC
870590 T
66 T
870591 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAAGCCAGC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAAGCCAGC
870656 T
66 T
870657 A
1 A
870658 CATTGGACTT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (66 bp):
AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAAGCCAGC
T
Found at i:870703 original size:49 final size:43
Alignment explanation
Indices: 870595--870749 Score: 220
Period size: 43 Copynumber: 3.5 Consensus size: 43
870585 CCAGCTAATA
* *
870595 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
*
870638 TGCTGATTCAAAGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTT--A-A--AA-GTGCCAATG
*
870687 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
870730 TGCTGATTCAAGGCCAGCTA
1 TGCTGATTCAAGGCCAGCTA
870750 ATATGCTGAT
Statistics
Matches: 100, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
43 55 0.55
44 2 0.02
45 1 0.01
46 2 0.02
47 1 0.01
48 2 0.02
49 37 0.37
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (43 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
Found at i:870725 original size:158 final size:158
Alignment explanation
Indices: 870437--871071 Score: 1153
Period size: 158 Copynumber: 4.0 Consensus size: 158
870427 GATGTCAATG
870437 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
* * * *
870502 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGC
66 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
870567 CAATGTGCTGATTCAAGGCCAGCTAATA
131 CAATGTGCTGATTCAAGGCCAGCTAATA
*
870595 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAAGCCAGCTACA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
870660 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
66 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
870725 CAATGTGCTGATTCAAGGCCAGCTAATA
131 CAATGTGCTGATTCAAGGCCAGCTAATA
870753 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
*
870818 TTGGACTTAAAGATGAAGGTGTCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
66 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
870883 CAATGTGCTGATTCAAGGCCAGCTAATA
131 CAATGTGCTGATTCAAGGCCAGCTAATA
870911 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
870976 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAA
66 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT----A-AA
*
871041 AGGTGCCAATATGCTGATTCAAGGCCAGCTA
126 A-GTGCCAATGTGCTGATTCAAGGCCAGCTA
871072 TATTGGATTT
Statistics
Matches: 462, Mismatches: 9, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
158 430 0.93
162 1 0.00
163 3 0.01
164 28 0.06
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (158 bp):
TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
CAATGTGCTGATTCAAGGCCAGCTAATA
Found at i:870793 original size:66 final size:66
Alignment explanation
Indices: 870687--870815 Score: 231
Period size: 66 Copynumber: 2.0 Consensus size: 66
870677 GGTGCCAATG
*
870687 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
1 TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
870752 A
66 A
* *
870753 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
1 TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
870816 CATTGGACTT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (66 bp):
TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
A
Found at i:870821 original size:43 final size:43
Alignment explanation
Indices: 870753--870907 Score: 220
Period size: 43 Copynumber: 3.5 Consensus size: 43
870743 CCAGCTAATA
* *
870753 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
*
870796 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGTCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTT--A-A--AA-GTGCCAATG
*
870845 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
870888 TGCTGATTCAAGGCCAGCTA
1 TGCTGATTCAAGGCCAGCTA
870908 ATATGCTGAT
Statistics
Matches: 100, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
43 55 0.55
44 2 0.02
45 1 0.01
46 2 0.02
47 1 0.01
48 2 0.02
49 37 0.37
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (43 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
Found at i:870915 original size:115 final size:113
Alignment explanation
Indices: 870796--871022 Score: 309
Period size: 115 Copynumber: 2.0 Consensus size: 113
870786 AGTGCCAATG
* *
870796 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGTCAATGTGCTGAGTCAAGGCCA
1 TGCTGATTCAAGGCCAGCGACATTGGACTT--A-A--AA-GTGCCAATGTGCTGAGTCAAGGCCA
*
870861 GCTACATTGGACTT-A-A-AA-GTGCCAATGTGCTGATTCAAGGCCAGCTAATA
60 GCTACATTGGACTTAAGAGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAATA
* *
870911 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
1 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGAGTCAAGGCCAGCTACA
870976 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
66 TTGGACTT-AAGA-GAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
871023 CATTGGACTT
Statistics
Matches: 101, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
109 37 0.37
110 2 0.02
111 1 0.01
112 2 0.02
113 1 0.01
114 2 0.02
115 56 0.55
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (113 bp):
TGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGAGTCAAGGCCAGCTACA
TTGGACTTAAGAGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAATA
Found at i:870951 original size:66 final size:66
Alignment explanation
Indices: 870845--870973 Score: 231
Period size: 66 Copynumber: 2.0 Consensus size: 66
870835 GGTGTCAATG
*
870845 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
1 TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
870910 A
66 A
* *
870911 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
1 TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
870974 CATTGGACTT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (66 bp):
TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
A
Found at i:871017 original size:49 final size:49
Alignment explanation
Indices: 870907--871131 Score: 309
Period size: 49 Copynumber: 4.7 Consensus size: 49
870897 AAGGCCAGCT
* *
870907 AATATGCTGATTCAAGGCCAGCGATATTGGACTT----A-AAA-GTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* *
870950 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* *
870999 AATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* *
871048 AATATGCTGATTCAAGGCCAGCTATATTGGATTTAAAGATAAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* * *
871097 AATATGGTGATTCAAGGCCAGCTATATTGGGCTTA
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTA
871132 GAAGGGTTGC
Statistics
Matches: 163, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
43 31 0.19
47 1 0.01
48 2 0.01
49 129 0.79
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (49 bp):
AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
Found at i:871175 original size:33 final size:35
Alignment explanation
Indices: 871131--871200 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
871121 TATTGGGCTT
871131 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
871165 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
871199 AG
1 AG
871201 GGAGAAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:871315 original size:70 final size:70
Alignment explanation
Indices: 871185--871581 Score: 500
Period size: 70 Copynumber: 5.7 Consensus size: 70
871175 CACCGACTTG
* * * *
871185 TGTGGGCTTTAGGAAGGGAGAAAGATGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTT-GAAAAGGAAAAAG-TGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCC
871249 ACGGAGT
64 ACGGAGT
871256 TGTGGGCTTT-AAAAGGAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCA
1 TGTGGGCTTTGAAAAGGAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAAGGGAAAAAGAGTGCCA
871320 CGGAGT
65 CGGAGT
871326 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA--GAAAAA-AGTGC
1 TGTGGGCTTTGAAAA-GG-AAAA-AGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGC
871388 CACGGAGT
63 CACGGAGT
871396 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
1 TGTGGGCTTTGAAAA-GG-AAAA-AGTGCCACGGAGTTGTGGGCTTT-AAAAGGGAAAAAGAGTG
871461 CCACGGAGT
62 CCACGGAGT
871470 TGTGGGCTTT-AAACA-GAAAAAGGTGCCACGGAGTTGTGGGCTTT-------AAAAAGAGTGCC
1 TGTGGGCTTTGAAA-AGGAAAAA-GTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCC
*
871526 ACAGAGT
64 ACGGAGT
* *
871533 TATGGGCTTTGAAAA-GAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
1 TGTGGGCTTTGAAAAGGAA-AAAGTGCCACGGAGTTGTGGGCTTT-AAAA
871582 AGATGCCACT
Statistics
Matches: 300, Mismatches: 7, Indels: 41
0.86 0.02 0.12
Matches are distributed among these distances:
63 53 0.18
64 5 0.02
68 17 0.06
69 11 0.04
70 97 0.32
71 50 0.17
72 3 0.01
73 17 0.06
74 47 0.16
ACGTcount: A:0.32, C:0.12, G:0.36, T:0.20
Consensus pattern (70 bp):
TGTGGGCTTTGAAAAGGAAAAAGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCAC
GGAGT
Found at i:871326 original size:37 final size:36
Alignment explanation
Indices: 871185--871581 Score: 521
Period size: 37 Copynumber: 11.4 Consensus size: 36
871175 CACCGACTTG
* *
871185 TGTGGGCTTTAGGAAGGGAGAAAGA-TGCCACGGAGT
1 TGTGGGCTTTA-AAAGGGAAAAAGAGTGCCACGGAGT
*
871221 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
871256 TGTGGGCTTTAAAA-GG-AAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
871289 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
871326 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
871363 TGTGGGCTTTAAAA--GAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
871396 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
871433 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
871470 TGTGGGCTTTAAACA--GAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGGAAAAAGAGTGCCACGGAGT
*
871504 TGTGGGCTTT-------AAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
871533 TATGGGCTTTGAAAA--GAAGAAG-GTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
871567 TGTGGGCTTTGAAAA
1 TGTGGGCTTT-AAAA
871582 AGATGCCACT
Statistics
Matches: 334, Mismatches: 9, Indels: 38
0.88 0.02 0.10
Matches are distributed among these distances:
28 6 0.02
29 20 0.06
33 46 0.14
34 76 0.23
35 36 0.11
36 29 0.09
37 121 0.36
ACGTcount: A:0.32, C:0.12, G:0.36, T:0.20
Consensus pattern (36 bp):
TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
Found at i:871367 original size:107 final size:106
Alignment explanation
Indices: 871185--871581 Score: 579
Period size: 107 Copynumber: 3.8 Consensus size: 106
871175 CACCGACTTG
* * *
871185 TGTGGGCTTTAGGAAGGGAGAAAGA-TGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTG
1 TGTGGGCTTTA-AAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
871247 CCACGGAGTTGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
65 CCACGGAGTTGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
871289 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
*
871354 CCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
65 CCACGGAGTTGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
871396 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
871461 CCACGGAGTTGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGT
65 CCACGGAGTTGTGGGCTTTAAA-AGGAAAAA-GTGCCACGGAGT
* * *
871504 TGTGGGCTTT-------AAAAAGAGTGCCACAGAGTTATGGGCTTTGAAAA--GAAGAAG-GTGC
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGC
871559 CACGGAGTTGTGGGCTTTGAAAA
66 CACGGAGTTGTGGGCTTT-AAAA
871582 AGATGCCACT
Statistics
Matches: 278, Mismatches: 8, Indels: 21
0.91 0.03 0.07
Matches are distributed among these distances:
97 23 0.08
98 9 0.03
100 32 0.12
104 21 0.08
105 18 0.06
106 2 0.01
107 150 0.54
108 23 0.08
ACGTcount: A:0.32, C:0.12, G:0.36, T:0.20
Consensus pattern (106 bp):
TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGC
CACGGAGTTGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
Found at i:871556 original size:63 final size:64
Alignment explanation
Indices: 871450--871605 Score: 237
Period size: 63 Copynumber: 2.5 Consensus size: 64
871440 TTTGAAAAGG
*
871450 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTT
* *
871514 -AAAAAGAGTGCCACAGAGTTATGGGCTTTGAAA-AGAAGAAGGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACAGAGTTGTGGGCTTT-AAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTT
* *
871577 GAAAAAGA-TGCCACTGACTTGTGGGCTTT
1 GAAAAAGAGTGCCACAGAGTTGTGGGCTTT
871606 TGAAGGGTAA
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
63 74 0.88
64 10 0.12
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (64 bp):
GAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTT
Found at i:873055 original size:1 final size:1
Alignment explanation
Indices: 873044--873146 Score: 89
Period size: 1 Copynumber: 103.0 Consensus size: 1
873034 ATCCAGACCC
* * * * * * ** *
873044 TTTTTTGTTTTTTTTTGTTTTTTTTTGTTTTTTTCTTTGTTTTTTTGTTTTTGCTTTTTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
873109 TTTGTTTTTTTTTTGTTTTGTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
873147 GTGTGGAGGA
Statistics
Matches: 77, Mismatches: 25, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 77 1.00
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.87
Consensus pattern (1 bp):
T
Found at i:873059 original size:10 final size:10
Alignment explanation
Indices: 873044--873146 Score: 122
Period size: 10 Copynumber: 10.1 Consensus size: 10
873034 ATCCAGACCC
873044 TTTTTTGTTT
1 TTTTTTGTTT
873054 TTTTTTGTTT
1 TTTTTTGTTT
873064 TTTTTTGTTT
1 TTTTTTGTTT
*
873074 TTTTCTT-TGT
1 TTTT-TTGTTT
873084 TTTTTTGTTT
1 TTTTTTGTTT
873094 TTGCTTTT-TTT
1 TT--TTTTGTTT
873105 TTGTTTTGTTTT
1 TT-TTTTG-TTT
873117 TTTTTTGTTT
1 TTTTTTGTTT
*
873127 TGTTTTGTTT
1 TTTTTTGTTT
873137 TTTTTT-TTT
1 TTTTTTGTTT
873146 T
1 T
873147 GTGTGGAGGA
Statistics
Matches: 82, Mismatches: 5, Indels: 13
0.82 0.05 0.13
Matches are distributed among these distances:
9 6 0.07
10 55 0.67
11 12 0.15
12 9 0.11
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.87
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:873064 original size:16 final size:15
Alignment explanation
Indices: 873044--873143 Score: 114
Period size: 16 Copynumber: 6.4 Consensus size: 15
873034 ATCCAGACCC
873044 TTTTTTGTTTTTTTT
1 TTTTTTGTTTTTTTT
873059 TGTTTTT-TTTTGTTTT
1 T-TTTTTGTTTT-TTTT
873075 TTTCTTTG-TTTTTTT
1 TTT-TTTGTTTTTTTT
*
873090 GTTTTTGCTTTTTTTT
1 TTTTTTG-TTTTTTTT
*
873106 TGTTTTGTTTTTTTT
1 TTTTTTGTTTTTTTT
873121 TTGTTTTGTTTTGTTTT
1 TT-TTTTGTTTT-TTTT
873138 TTTTTT
1 TTTTTT
873144 TTTGTGTGGA
Statistics
Matches: 73, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
14 4 0.05
15 22 0.30
16 41 0.56
17 6 0.08
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.87
Consensus pattern (15 bp):
TTTTTTGTTTTTTTT
Found at i:882851 original size:10 final size:10
Alignment explanation
Indices: 882836--882862 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
882826 ATGTATCAAG
882836 CAAAAACAAA
1 CAAAAACAAA
882846 CAAAAACAAA
1 CAAAAACAAA
882856 CAAAAAC
1 CAAAAAC
882863 TTAGTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAACAAA
Found at i:887070 original size:52 final size:51
Alignment explanation
Indices: 886985--887108 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
886975 ATATGAAAAG
* *
886985 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
*
887036 TTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAA
1 -TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
887088 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
887109 AAGATCAGTG
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 21 0.30
52 48 0.70
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
Found at i:887121 original size:51 final size:51
Alignment explanation
Indices: 886985--887128 Score: 202
Period size: 52 Copynumber: 2.8 Consensus size: 51
886975 ATATGAAAAG
*
886985 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
887037 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAA-
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
887088 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
887129 ATGTATCGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
50 2 0.02
51 34 0.40
52 48 0.57
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:887135 original size:13 final size:13
Alignment explanation
Indices: 887117--887141 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
887107 CAAAGATCAG
887117 TGTATCGATACAA
1 TGTATCGATACAA
887130 TGTATCGATACA
1 TGTATCGATACA
887142 TTTAAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:887209 original size:20 final size:19
Alignment explanation
Indices: 887180--887217 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
887170 GCAGTAGCTT
887180 AAATTGTATCGATACAAAA
1 AAATTGTATCGATACAAAA
887199 AAATATGTATCGATACAAA
1 AAAT-TGTATCGATACAAA
887218 TCGTTGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (19 bp):
AAATTGTATCGATACAAAA
Found at i:887998 original size:49 final size:49
Alignment explanation
Indices: 887939--888370 Score: 522
Period size: 49 Copynumber: 9.1 Consensus size: 49
887929 ATATGCGGCT
887939 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
*
887988 AGCGACATTGGACTT----A-AAA-GTGCCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * * *
888031 AGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * *
888080 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * *
888129 AGCTATATTGGACTTAAAGATAAAGGTGCCAATATGGTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * *
888178 AACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGAT-----AAAGG-TGCCAATGTGCTGATTCAAGGCC
888233 AGCGATATTGGACTT----A-AAA-GTGCCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * * *
888276 AGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
888325 AGCGATATTGGACTT----A-AAA-GTGCCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
888368 AGC
1 AGC
888371 TAATATGCTG
Statistics
Matches: 339, Mismatches: 26, Indels: 42
0.83 0.06 0.10
Matches are distributed among these distances:
43 99 0.29
44 6 0.02
45 5 0.01
47 2 0.01
48 4 0.01
49 184 0.54
51 1 0.00
54 5 0.01
55 33 0.10
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (49 bp):
AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
Found at i:888068 original size:92 final size:94
Alignment explanation
Indices: 887939--888370 Score: 485
Period size: 92 Copynumber: 4.5 Consensus size: 94
887929 ATATGCGGCT
887939 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-
1 AGCGATATTGGACTTAAAGAT-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
*
888003 A-AAA-GTGCCAATGTGCTGATTCAAGGCC
65 AGAAAGGTGCCAATATGCTGATTCAAGGCC
* * * *
888031 AGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
1 AGCGATATTGGACTTAAAGAT-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-
888096 AAGATAAAGGTGCCAATATGCTGATTCAAGGCC
64 AAG--AAAGGTGCCAATATGCTGATTCAAGGCC
* * * * * *
888129 AGCTATATTGGACTTAAAGATAAAGGTGCCAATATGGTGATTCAAGGCCAACGATATTGGGCTTA
1 AGCGATATTGGACTTAAAGAT-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-
* *
888194 AAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCC
64 ---A--AG--AAAGG-TGCCAATATGCTGATTCAAGGCC
*
888233 AGCGATATTGGACTT--A-A-AA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
1 AGCGATATTGGACTTAAAGATAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-A
888293 AGATGAAGGTGCCAATATGCTGATTCAAGGCC
65 AGA--AAGGTGCCAATATGCTGATTCAAGGCC
888325 AGCGATATTGGACTT--A-A-AA-GTGCCAATGTGCTGATTCAAGGCCAGC
1 AGCGATATTGGACTTAAAGATAAGGTGCCAATGTGCTGATTCAAGGCCAGC
888371 TAATATGCTG
Statistics
Matches: 297, Mismatches: 29, Indels: 28
0.84 0.08 0.08
Matches are distributed among these distances:
91 1 0.00
92 126 0.42
93 6 0.02
94 1 0.00
95 1 0.00
97 3 0.01
98 111 0.37
99 2 0.01
101 2 0.01
102 1 0.00
103 8 0.03
104 35 0.12
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (94 bp):
AGCGATATTGGACTTAAAGATAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAA
GAAAGGTGCCAATATGCTGATTCAAGGCC
Found at i:888412 original size:66 final size:66
Alignment explanation
Indices: 888306--888438 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
888296 TGAAGGTGCC
*
888306 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAAGCCAGC
888371 T
66 T
888372 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAAGCCAGC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAAGCCAGC
888437 T
66 T
888438 A
1 A
888439 CATTGGACTT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (66 bp):
AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAAGCCAGC
T
Found at i:888484 original size:49 final size:43
Alignment explanation
Indices: 888376--888530 Score: 220
Period size: 43 Copynumber: 3.5 Consensus size: 43
888366 CCAGCTAATA
* *
888376 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
*
888419 TGCTGATTCAAAGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTT--A-A--AA-GTGCCAATG
*
888468 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
888511 TGCTGATTCAAGGCCAGCTA
1 TGCTGATTCAAGGCCAGCTA
888531 ATATGCTGAT
Statistics
Matches: 100, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
43 55 0.55
44 2 0.02
45 1 0.01
46 2 0.02
47 1 0.01
48 2 0.02
49 37 0.37
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (43 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
Found at i:888506 original size:158 final size:158
Alignment explanation
Indices: 888218--888852 Score: 1153
Period size: 158 Copynumber: 4.0 Consensus size: 158
888208 GATGTCAATG
888218 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
* * * *
888283 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGC
66 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
888348 CAATGTGCTGATTCAAGGCCAGCTAATA
131 CAATGTGCTGATTCAAGGCCAGCTAATA
*
888376 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAAGCCAGCTACA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
888441 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
66 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
888506 CAATGTGCTGATTCAAGGCCAGCTAATA
131 CAATGTGCTGATTCAAGGCCAGCTAATA
888534 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
*
888599 TTGGACTTAAAGATGAAGGTGTCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
66 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
888664 CAATGTGCTGATTCAAGGCCAGCTAATA
131 CAATGTGCTGATTCAAGGCCAGCTAATA
888692 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
888757 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAA
66 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT----A-AA
*
888822 AGGTGCCAATATGCTGATTCAAGGCCAGCTA
126 A-GTGCCAATGTGCTGATTCAAGGCCAGCTA
888853 TATTGGATTT
Statistics
Matches: 462, Mismatches: 9, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
158 430 0.93
162 1 0.00
163 3 0.01
164 28 0.06
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (158 bp):
TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGC
CAATGTGCTGATTCAAGGCCAGCTAATA
Found at i:888574 original size:66 final size:66
Alignment explanation
Indices: 888468--888596 Score: 231
Period size: 66 Copynumber: 2.0 Consensus size: 66
888458 GGTGCCAATG
*
888468 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
1 TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
888533 A
66 A
* *
888534 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
1 TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
888597 CATTGGACTT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (66 bp):
TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
A
Found at i:888602 original size:43 final size:43
Alignment explanation
Indices: 888534--888688 Score: 220
Period size: 43 Copynumber: 3.5 Consensus size: 43
888524 CCAGCTAATA
* *
888534 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
*
888577 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGTCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTT--A-A--AA-GTGCCAATG
*
888626 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
888669 TGCTGATTCAAGGCCAGCTA
1 TGCTGATTCAAGGCCAGCTA
888689 ATATGCTGAT
Statistics
Matches: 100, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
43 55 0.55
44 2 0.02
45 1 0.01
46 2 0.02
47 1 0.01
48 2 0.02
49 37 0.37
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (43 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATG
Found at i:888696 original size:115 final size:113
Alignment explanation
Indices: 888577--888803 Score: 309
Period size: 115 Copynumber: 2.0 Consensus size: 113
888567 AGTGCCAATG
* *
888577 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGTCAATGTGCTGAGTCAAGGCCA
1 TGCTGATTCAAGGCCAGCGACATTGGACTT--A-A--AA-GTGCCAATGTGCTGAGTCAAGGCCA
*
888642 GCTACATTGGACTT-A-A-AA-GTGCCAATGTGCTGATTCAAGGCCAGCTAATA
60 GCTACATTGGACTTAAGAGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAATA
* *
888692 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACA
1 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGAGTCAAGGCCAGCTACA
888757 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
66 TTGGACTT-AAGA-GAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
888804 CATTGGACTT
Statistics
Matches: 101, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
109 37 0.37
110 2 0.02
111 1 0.01
112 2 0.02
113 1 0.01
114 2 0.02
115 56 0.55
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (113 bp):
TGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGAGTCAAGGCCAGCTACA
TTGGACTTAAGAGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTAATA
Found at i:888732 original size:66 final size:66
Alignment explanation
Indices: 888626--888754 Score: 231
Period size: 66 Copynumber: 2.0 Consensus size: 66
888616 GGTGTCAATG
*
888626 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
1 TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
888691 A
66 A
* *
888692 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
1 TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
888755 CATTGGACTT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (66 bp):
TGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
A
Found at i:888798 original size:49 final size:49
Alignment explanation
Indices: 888688--888912 Score: 309
Period size: 49 Copynumber: 4.7 Consensus size: 49
888678 AAGGCCAGCT
* *
888688 AATATGCTGATTCAAGGCCAGCGATATTGGACTT----A-AAA-GTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* *
888731 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* *
888780 AATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* *
888829 AATATGCTGATTCAAGGCCAGCTATATTGGATTTAAAGATAAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
* * *
888878 AATATGGTGATTCAAGGCCAGCTATATTGGGCTTA
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTA
888913 GAAGGGTTGC
Statistics
Matches: 163, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
43 31 0.19
47 1 0.01
48 2 0.01
49 129 0.79
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (49 bp):
AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCC
Found at i:888956 original size:33 final size:35
Alignment explanation
Indices: 888912--888981 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
888902 TATTGGGCTT
888912 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
888946 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
888980 AG
1 AG
888982 GGAGAAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:889096 original size:70 final size:70
Alignment explanation
Indices: 888966--889362 Score: 500
Period size: 70 Copynumber: 5.7 Consensus size: 70
888956 CACCGACTTG
* * * *
888966 TGTGGGCTTTAGGAAGGGAGAAAGATGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTT-GAAAAGGAAAAAG-TGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCC
889030 ACGGAGT
64 ACGGAGT
889037 TGTGGGCTTT-AAAAGGAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCA
1 TGTGGGCTTTGAAAAGGAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAAGGGAAAAAGAGTGCCA
889101 CGGAGT
65 CGGAGT
889107 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA--GAAAAA-AGTGC
1 TGTGGGCTTTGAAAA-GG-AAAA-AGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGC
889169 CACGGAGT
63 CACGGAGT
889177 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
1 TGTGGGCTTTGAAAA-GG-AAAA-AGTGCCACGGAGTTGTGGGCTTT-AAAAGGGAAAAAGAGTG
889242 CCACGGAGT
62 CCACGGAGT
889251 TGTGGGCTTT-AAACA-GAAAAAGGTGCCACGGAGTTGTGGGCTTT-------AAAAAGAGTGCC
1 TGTGGGCTTTGAAA-AGGAAAAA-GTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCC
*
889307 ACAGAGT
64 ACGGAGT
* *
889314 TATGGGCTTTGAAAA-GAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
1 TGTGGGCTTTGAAAAGGAA-AAAGTGCCACGGAGTTGTGGGCTTT-AAAA
889363 AGATGCCACT
Statistics
Matches: 300, Mismatches: 7, Indels: 41
0.86 0.02 0.12
Matches are distributed among these distances:
63 53 0.18
64 5 0.02
68 17 0.06
69 11 0.04
70 97 0.32
71 50 0.17
72 3 0.01
73 17 0.06
74 47 0.16
ACGTcount: A:0.32, C:0.12, G:0.36, T:0.20
Consensus pattern (70 bp):
TGTGGGCTTTGAAAAGGAAAAAGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCAC
GGAGT
Found at i:889107 original size:37 final size:36
Alignment explanation
Indices: 888966--889362 Score: 521
Period size: 37 Copynumber: 11.4 Consensus size: 36
888956 CACCGACTTG
* *
888966 TGTGGGCTTTAGGAAGGGAGAAAGA-TGCCACGGAGT
1 TGTGGGCTTTA-AAAGGGAAAAAGAGTGCCACGGAGT
*
889002 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
889037 TGTGGGCTTTAAAA-GG-AAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
889070 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
889107 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
889144 TGTGGGCTTTAAAA--GAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
889177 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
889214 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
889251 TGTGGGCTTTAAACA--GAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGGAAAAAGAGTGCCACGGAGT
*
889285 TGTGGGCTTT-------AAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
889314 TATGGGCTTTGAAAA--GAAGAAG-GTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
889348 TGTGGGCTTTGAAAA
1 TGTGGGCTTT-AAAA
889363 AGATGCCACT
Statistics
Matches: 334, Mismatches: 9, Indels: 38
0.88 0.02 0.10
Matches are distributed among these distances:
28 6 0.02
29 20 0.06
33 46 0.14
34 76 0.23
35 36 0.11
36 29 0.09
37 121 0.36
ACGTcount: A:0.32, C:0.12, G:0.36, T:0.20
Consensus pattern (36 bp):
TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
Found at i:889148 original size:107 final size:106
Alignment explanation
Indices: 888966--889362 Score: 579
Period size: 107 Copynumber: 3.8 Consensus size: 106
888956 CACCGACTTG
* * *
888966 TGTGGGCTTTAGGAAGGGAGAAAGA-TGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTG
1 TGTGGGCTTTA-AAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
889028 CCACGGAGTTGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
65 CCACGGAGTTGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
889070 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
*
889135 CCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
65 CCACGGAGTTGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
889177 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTG
889242 CCACGGAGTTGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGT
65 CCACGGAGTTGTGGGCTTTAAA-AGGAAAAA-GTGCCACGGAGT
* * *
889285 TGTGGGCTTT-------AAAAAGAGTGCCACAGAGTTATGGGCTTTGAAAA--GAAGAAG-GTGC
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGC
889340 CACGGAGTTGTGGGCTTTGAAAA
66 CACGGAGTTGTGGGCTTT-AAAA
889363 AGATGCCACT
Statistics
Matches: 278, Mismatches: 8, Indels: 21
0.91 0.03 0.07
Matches are distributed among these distances:
97 23 0.08
98 9 0.03
100 32 0.12
104 21 0.08
105 18 0.06
106 2 0.01
107 150 0.54
108 23 0.08
ACGTcount: A:0.32, C:0.12, G:0.36, T:0.20
Consensus pattern (106 bp):
TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGC
CACGGAGTTGTGGGCTTTAAAAGGAAAAAGTGCCACGGAGT
Found at i:889337 original size:63 final size:64
Alignment explanation
Indices: 889231--889386 Score: 237
Period size: 63 Copynumber: 2.5 Consensus size: 64
889221 TTTGAAAAGG
*
889231 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTT
* *
889295 -AAAAAGAGTGCCACAGAGTTATGGGCTTTGAAA-AGAAGAAGGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACAGAGTTGTGGGCTTT-AAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTT
* *
889358 GAAAAAGA-TGCCACTGACTTGTGGGCTTT
1 GAAAAAGAGTGCCACAGAGTTGTGGGCTTT
889387 TGAAGGGTAA
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
63 74 0.88
64 10 0.12
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (64 bp):
GAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTT
Found at i:890536 original size:58 final size:59
Alignment explanation
Indices: 890474--890603 Score: 154
Period size: 61 Copynumber: 2.2 Consensus size: 59
890464 CGACATTGGA
* * * * **
890474 CTTAAGGATGCGAAGAATG-AAGGTGCCAATGTGCTGATTCATGGCAAACAATATCGGG
1 CTTAAAGATGAGAAGAATGAAAGGTGCCAATATACTGATTCAAAGCAAACAATATCGGG
* * *
890532 CTTAAAGATGAGAAGAATGATAAAGGTGCCAATATACTGATTCAAAGCAAGCGATATTGGG
1 CTTAAAGATGAGAAGAATG--AAAGGTGCCAATATACTGATTCAAAGCAAACAATATCGGG
890593 CTTAAAGATGA
1 CTTAAAGATGA
890604 CAAAGGTGCT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
58 17 0.28
61 43 0.72
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (59 bp):
CTTAAAGATGAGAAGAATGAAAGGTGCCAATATACTGATTCAAAGCAAACAATATCGGG
Found at i:890754 original size:113 final size:113
Alignment explanation
Indices: 890539--890776 Score: 273
Period size: 113 Copynumber: 2.1 Consensus size: 113
890529 GGGCTTAAAG
* *
890539 ATGAGAAGAATGATAAAGGTGCCAATATACTGATTCAAAGCAAGCGATATTGGGCTTAAAGATGA
1 ATGAGAAAAATGATAAAGGTACCAATATACTGATTCAAAGCAAGCGATATTGGGCTTAAAGATGA
* * * * * * * * * *
890604 CAAAGGTGCTAGTGTGTTAATTCAAGGCCAGCGACATTGGACTTGAAA
66 CAAAGATGCCAATGCGCTAATACAAGACCAACAACATTAGACTTGAAA
* * *
890652 ATGAGAAAAATGATAAAGGTACCGATATGCTGATTCAAAGCCAGCGATATTGGGCTTAAAGATG-
1 ATGAGAAAAATGATAAAGGTACCAATATACTGATTCAAAGCAAGCGATATTGGGCTTAAAGATGA
** * *
890716 TGAAGAATGCCAATGCGCTGATAC-AGAACCAACAACATTAGACTTGAAG
66 CAAAG-ATGCCAATGCGCTAATACAAG-ACCAACAACATTAGACTTGAAA
890765 ATGAGAAAAATG
1 ATGAGAAAAATG
890777 TCAATGTGCT
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
112 5 0.05
113 99 0.95
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.22
Consensus pattern (113 bp):
ATGAGAAAAATGATAAAGGTACCAATATACTGATTCAAAGCAAGCGATATTGGGCTTAAAGATGA
CAAAGATGCCAATGCGCTAATACAAGACCAACAACATTAGACTTGAAA
Found at i:890806 original size:52 final size:52
Alignment explanation
Indices: 890679--891664 Score: 312
Period size: 52 Copynumber: 18.6 Consensus size: 52
890669 GGTACCGATA
* * * * * * *
890679 TGCTGATTCAAAGCCAGCGATATTGGGCTTAAAGATGTGAAGAATGCCAATG
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAAAATGCCAATG
* * * * * *
890731 CGCTGATAC-AGAACCAACAACATTAGACTTGAAGATGAGAAAAATGTCAATG
1 TGCTGATTCAAG-GCCAACGACATTAGACTTAAAGATGAGAAAAATGCCAATG
* *
890783 TGCTGATTCAAGGCCATCGACATTAGACTTAAAGATGCAAAGAAATGATAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATG---AG--A--A-AAA--TGCCAATG
* * * * ** * * * *** *
890845 TGCTGATTCATGGCTAGCGATATCGGGCTTGATGATGGGAAGAATGATAAAGGTGTTGATA
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGAT--G-AG-A--A-AAA--TGCCAATG
* * * * * ** **
890906 TGCTGATTTAAGGCTAGCGATATTGGGTTTAAAGATG-GCAAAGGTGCCAATG
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAG-AAAAATGCCAATG
* * * * * ** *
890958 TGCTAATTCAAGGCTAGCGACATTAGACTTAAATATGATAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAAAATGCCAATG
* * * * * *** *
891010 TGTTAATTCAAGGCCAGCGACATTAGACTTAAATATGACAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAAAATGCCAATG
* * * * * *
891062 TGCTAATTCAAGGCCAGCGATATTGGACTT-AAGA-AAGAAAAAGATGCCAATA
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAG-AAAA-ATGCCAATG
* * * * ** * *
891114 TGCTAATTCAAGGCCAGA-GACATTGGACTTAAATATGACAAAGGTGCTAATA
1 TGCTGATTCAAGGCCA-ACGACATTAGACTTAAAGATGAGAAAAATGCCAATG
** * * * * * *
891166 TATTGATTTAAGGCTAGCGATATTGGACTT-AAGA-AAGAAAAAGGTGCCAATG
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAAAA--TGCCAATG
* * * * * * ** *
891218 TGTTGATTCAAGGCTAGCGACATTGGATTTAAAGATGACAAAAGCGCCAATA
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAAAATGCCAATG
* * * * * *
891270 TGTTGATTCAAAGCCAGCGATATTGGACTT-AAGA-AAGAAAAATGTGCCAATG
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAAAA--TGCCAATG
* * * ** * *
891322 TGTTGATTCCAA-GCCAGCGACATTAGACTTAAAGATGACAAAGGTGCTAATA
1 TGCTGATT-CAAGGCCAACGACATTAGACTTAAAGATGAGAAAAATGCCAATG
* * * * *
891374 TTCTGATTCAAGGCCAATGATATTAGACTTAAA-A-AAGAAAAAGTGTCAATG
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAAAA-TGCCAATG
* * * * * * *** *
891425 TGTTGATTCTAGGCCAGCGACATTAGATTTAAAAATGACAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAAAATGCCAATG
* * * * * * *
891477 TGCTGATTCAAAGCTAGA-TATATTAGACTT-AAGA-AAGAAAAAGGTACTAATG
1 TGCTGATTCAAGGCCA-ACGACATTAGACTTAAAGATGAGAAAAA--TGCCAATG
* ** * * * *
891529 TACTGATTCAAGGCCAGTGACATTAGACTTAAAGATAATAAAGATGCTAATG
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAAAATGCCAATG
* * * * * ** *
891581 TGCTGATTCAAGGCCAGCAACATTGGGCTTAAAAATG-GTAAATGTGCCAATA
1 TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAG-AAAAATGCCAATG
* * *
891633 TGCTAATTCAAGGCCAATGATATTAGACTTAA
1 TGCTGATTCAAGGCCAACGACATTAGACTTAA
891665 GAAAAGAATA
Statistics
Matches: 706, Mismatches: 187, Indels: 82
0.72 0.19 0.08
Matches are distributed among these distances:
50 18 0.03
51 52 0.07
52 498 0.71
53 27 0.04
54 17 0.02
55 3 0.00
57 3 0.00
59 2 0.00
60 3 0.00
61 46 0.07
62 36 0.05
64 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (52 bp):
TGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAAAATGCCAATG
Found at i:890943 original size:61 final size:62
Alignment explanation
Indices: 890778--890948 Score: 164
Period size: 61 Copynumber: 2.8 Consensus size: 62
890768 AGAAAAATGT
* * * * ** * *
890778 CAATGTGCTGATTCAAGGCCATCGACATTAGACTTAAAGATGCAAAGAAATGATAAAGGTGC
1 CAATATGCTGATTCAAGGCTAGCGATATCGGGCTTAAAGATGGAAAGAAATGATAAAGGTGC
* * * * *
890840 CAATATGCTGATTCATGGCTAGCGATATCGGGCTTGATGATGGGAAG-AATGATAAAGGTGT
1 CAATATGCTGATTCAAGGCTAGCGATATCGGGCTTAAAGATGGAAAGAAATGATAAAGGTGC
** * * *
890901 TGATATGCTGATTTAAGGCTAGCGATATTGGGTTTAAAGATGGCAAAG
1 CAATATGCTGATTCAAGGCTAGCGATATCGGGCTTAAAGATGG-AAAG
890949 GTGCCAATGT
Statistics
Matches: 86, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
61 48 0.56
62 38 0.44
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (62 bp):
CAATATGCTGATTCAAGGCTAGCGATATCGGGCTTAAAGATGGAAAGAAATGATAAAGGTGC
Found at i:891068 original size:104 final size:104
Alignment explanation
Indices: 890934--891664 Score: 768
Period size: 104 Copynumber: 7.0 Consensus size: 104
890924 GATATTGGGT
* * * * * * * *
890934 TTAAAGATGGCAAAGGTGCCAATGTGCTAATTCAAGGCTAGCGACATTAGACTTAA-ATATGATA
1 TTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGA-AAGAAA
* *
890998 AAGGTGCCAATATGTTAATTCAAGGCCAGCGACATTAGAC
65 AAGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTAGAC
* * *
891038 TTAAATATGACAAAGGCGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAGAAAGAAAA
1 TTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGAAAA
* * * * * *
891103 AGATGCCAATATGCTAATTCAAGGCCAGAGACATTGGAC
66 AGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTAGAC
* * ** * *
891142 TTAAATATGACAAAGGTGCTAATATATTGATTTAAGGCTAGCGATATTGGACTTAAGAAAGAAAA
1 TTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGAAAA
* * *
891207 AGGTGCCAATGTGTTGATTCAAGGCTAGCGACATTGGAT
66 AGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTAGAC
* * * *
891246 TTAAAGATGACAAAAGCGCCAATATGTTGATTCAAAGCCAGCGATATTGGACTTAAGAAAGAAAA
1 TTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGAAAA
*
891311 ATGTGCCAATGTGTTGATTCCAA-GCCAGCGACATTAGAC
66 AGGTGCCAATGTGTTGATT-CAAGGCCAGCGACATTAGAC
* * ** * *
891350 TTAAAGATGACAAAGGTGCTAATATTCTGATTCAAGGCCAATGATATTAGACTTAAAAAAGAAAA
1 TTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGAAAA
* * *
891415 A-GTGTCAATGTGTTGATTCTAGGCCAGCGACATTAGAT
66 AGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTAGAC
* * * * ** *
891453 TTAAAAATGACAAAGGCGCCAATATGCTGATTCAAAGCTAGATATATTAGACTTAAGAAAGAAAA
1 TTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGAAAA
* * ** *
891518 AGGTACTAATGTACTGATTCAAGGCCAGTGACATTAGAC
66 AGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTAGAC
* * * * * * * * **
891557 TTAAAGATAATAAAGATGCTAATGTGCTGATTCAAGGCCAGCAACATTGGGCTTAA-AAATGGTA
1 TTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAA-GAAA
* * * * ** *
891621 AATGTGCCAATATGCTAATTCAAGGCCAATGATATTAGAC
65 AAGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTAGAC
891661 TTAA
1 TTAA
891665 GAAAAGAATA
Statistics
Matches: 528, Mismatches: 94, Indels: 10
0.84 0.15 0.02
Matches are distributed among these distances:
102 2 0.00
103 90 0.17
104 432 0.82
105 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (104 bp):
TTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGAAAA
AGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTAGAC
Found at i:891120 original size:156 final size:155
Alignment explanation
Indices: 890949--891668 Score: 660
Period size: 156 Copynumber: 4.6 Consensus size: 155
890939 GATGGCAAAG
* * * * *
890949 GTGCCAATGTGCTAATTCAAGGCTAGCGACATTAGACTTAAATATGATAAAGGTGCCAATATGTT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATGACAAAGGTGCCAATATGTT
* * * * * *
891014 AATTCAAGGCCAGCGACATTAGACTTAA-ATATGACAAAGGCGCCAATATGCTAATTCAAGGCCA
66 GATTCAAGGCCAGCGATATTAGACTTAAGA-AAGAAAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
891078 GCGATATTGGACTTAAGAAAGAAAAA
130 GCGACATTAGACTTAAGAAAGAAAAA
* * * * * *
891104 GATGCCAATATGCTAATTCAAGGCCAGAGACATTGGACTTAAATATGACAAAGGTGCTAATATAT
1 G-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATGACAAAGGTGCCAATATGT
* * * * * *
891169 TGATTTAAGGCTAGCGATATTGGACTTAAGAAAGAAAAAGGTGCCAATGTGTTGATTCAAGGCTA
65 TGATTCAAGGCCAGCGATATTAGACTTAAGAAAGAAAAAGGTGCCAATATGCTGATTCAAGGCCA
* * *
891234 GCGACATTGGATTTAA-AGATGACAAAA
130 GCGACATTAGACTTAAGA-AAGA-AAAA
* * * * * * * *
891261 GCGCCAATATGTTGATTCAAAGCCAGCGATATTGGACTTAAGAAA-GAAAAATGTGCCAATGTGT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAA-AAATGACAAAGGTGCCAATATGT
* * * * *
891325 TGATTCCAA-GCCAGCGACATTAGACTTAA-AGATGACAAAGGTGCTAATATTCTGATTCAAGGC
65 TGATT-CAAGGCCAGCGATATTAGACTTAAGA-AAGAAAAAGGTGCCAATATGCTGATTCAAGGC
** * *
891388 CAATGATATTAGACTTAAAAAAGAAAAA
128 CAGCGACATTAGACTTAAGAAAGAAAAA
* * * * * * *
891416 GTGTCAATGTGTTGATTCTAGGCCAGCGACATTAGATTTAAAAATGACAAAGGCGCCAATATGCT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATGACAAAGGTGCCAATATGTT
* * ** * * * *
891481 GATTCAAAGCTAGATATATTAGACTTAAGAAAGAAAAAGGTACTAATGTACTGATTCAAGGCCAG
66 GATTCAAGGCCAGCGATATTAGACTTAAGAAAGAAAAAGGTGCCAATATGCTGATTCAAGGCCAG
* * *
891546 TGACATTAGACTTAAAGATA-ATAAA
131 CGACATTAGACTT-AAGAAAGAAAAA
* * * ** * *
891571 GATGCTAATGTGCTGATTCAAGGCCAGCAACATTGGGCTTAAAAATGGTAAATGTGCCAATATGC
1 G-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATGACAAAGGTGCCAATATGT
* **
891636 TAATTCAAGGCCAATGATATTAGACTTAAGAAA
65 TGATTCAAGGCCAGCGATATTAGACTTAAGAAA
891669 AGAATATTTG
Statistics
Matches: 456, Mismatches: 96, Indels: 25
0.79 0.17 0.04
Matches are distributed among these distances:
154 6 0.01
155 121 0.27
156 318 0.70
157 11 0.02
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (155 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATGACAAAGGTGCCAATATGTT
GATTCAAGGCCAGCGATATTAGACTTAAGAAAGAAAAAGGTGCCAATATGCTGATTCAAGGCCAG
CGACATTAGACTTAAGAAAGAAAAA
Found at i:891843 original size:32 final size:32
Alignment explanation
Indices: 891727--891949 Score: 174
Period size: 32 Copynumber: 7.0 Consensus size: 32
891717 GGCTTAAAAT
* * *
891727 GGTTGCCACCGACTTATGTGGGCTTTAGAGAA-G
1 GGTTGCCACCAACTTGTGTGAGCTTTA-A-AAGG
* *
891760 GGTTGCCACTAACTTGTGTGGGCTTTGAAGAA--
1 GGTTGCCACCAACTTGTGTGAGCTTT-AA-AAGG
* * **
891792 GGTTACCGCTGACTTGTGTGAGCTTTAAAAGG
1 GGTTGCCACCAACTTGTGTGAGCTTTAAAAGG
* * *
891824 GGTTGCCACCAACTCGTGTGGGCTTTAGAAGG
1 GGTTGCCACCAACTTGTGTGAGCTTTAAAAGG
* *
891856 GGCTGCCACCAACTTATGT-AGGCTTTAAAA-G
1 GGTTGCCACCAACTTGTGTGA-GCTTTAAAAGG
* * *
891887 GGTTGCCACCGACTTGTGTGGGCTTTAAAAGC
1 GGTTGCCACCAACTTGTGTGAGCTTTAAAAGG
*
891919 GGTTGCCA-CAGAGTTGTG-GA-CTTTAAAAGG
1 GGTTGCCACCA-ACTTGTGTGAGCTTTAAAAGG
891949 G
1 G
891950 ATGCTACGAA
Statistics
Matches: 155, Mismatches: 28, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
30 12 0.08
31 30 0.19
32 85 0.55
33 27 0.17
34 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.28
Consensus pattern (32 bp):
GGTTGCCACCAACTTGTGTGAGCTTTAAAAGG
Found at i:891913 original size:63 final size:62
Alignment explanation
Indices: 891727--891949 Score: 227
Period size: 64 Copynumber: 3.5 Consensus size: 62
891717 GGCTTAAAAT
*
891727 GGTTGCCACCGACTTATGTGGGCTTTAGAGAAGGGTTGCCACTAACTTGTGTGGGCTTT-GAAGA
1 GGTTGCCACCGACTTATGT-GGCTTTA-A-AAGGGTTGCCACCAACTTGTGTGGGCTTTAGAAG-
891791 A
62 A
* * * * * *
891792 GGTTACCGCTGACTTGTGTGAGCTTTAAAAGGGGTTGCCACCAACTCGTGTGGGCTTTAGAAGG
1 GGTTGCCACCGACTTATGTG-GCTTTAAAA-GGGTTGCCACCAACTTGTGTGGGCTTTAGAAGA
* * * * *
891856 GGCTGCCACCAACTTATGTAGGCTTTAAAAGGGTTGCCACCGACTTGTGTGGGCTTTAAAAGC
1 GGTTGCCACCGACTTATGT-GGCTTTAAAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAAGA
* *
891919 GGTTGCCACAGA-GT-TGTGGACTTTAAAAGGG
1 GGTTGCCACCGACTTATGTGG-CTTTAAAAGGG
891950 ATGCTACGAA
Statistics
Matches: 132, Mismatches: 21, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
60 2 0.02
61 14 0.11
62 1 0.01
63 40 0.30
64 49 0.37
65 26 0.20
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.28
Consensus pattern (62 bp):
GGTTGCCACCGACTTATGTGGCTTTAAAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAAGA
Found at i:891943 original size:30 final size:29
Alignment explanation
Indices: 891878--892035 Score: 131
Period size: 30 Copynumber: 5.3 Consensus size: 29
891868 CTTATGTAGG
* * * *
891878 CTTTAAAAGGGTTGCCACCGACTTGTGTGGG
1 CTTTAAAAGGGATGCCACAGA-GT-TGTGGA
*
891909 CTTTAAAAGCGGTTGCCACAGAGTTGTGGA
1 CTTTAAAAG-GGATGCCACAGAGTTGTGGA
* * *
891939 CTTTAAAAGGGATGCTAC-GAAGTTATGAA
1 CTTTAAAAGGGATGCCACAG-AGTTGTGGA
*
891968 CTTTAAAAAGGGATGCTACAGAGTTGT-GA
1 CTTT-AAAAGGGATGCCACAGAGTTGTGGA
* *
891997 GCTTTAAAAAGGGATGCCACAAAGTTGTGGG
1 -CTTT-AAAAGGGATGCCACAGAGTTGTGGA
*
892028 CTTGAAAA
1 CTTTAAAA
892036 AAAAGTGCCA
Statistics
Matches: 108, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
28 1 0.01
29 23 0.21
30 61 0.56
31 12 0.11
32 11 0.10
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (29 bp):
CTTTAAAAGGGATGCCACAGAGTTGTGGA
Found at i:891989 original size:59 final size:60
Alignment explanation
Indices: 891909--892022 Score: 153
Period size: 59 Copynumber: 1.9 Consensus size: 60
891899 CTTGTGTGGG
* * *
891909 CTTTAAAAGCGGTTGCCACAGAGTTGTG-GACTTT-AAAAGGGATGCTACGAAGTTATGAA
1 CTTTAAAAGCGGATGCCACAGAGTTGTGAG-CTTTAAAAAGGGATGCCACAAAGTTATGAA
*
891968 CTTTAAAAAG-GGATGCTACAGAGTTGTGAGCTTTAAAAAGGGATGCCACAAAGTT
1 CTTT-AAAAGCGGATGCCACAGAGTTGTGAGCTTTAAAAAGGGATGCCACAAAGTT
892023 GTGGGCTTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
59 24 0.50
60 24 0.50
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.26
Consensus pattern (60 bp):
CTTTAAAAGCGGATGCCACAGAGTTGTGAGCTTTAAAAAGGGATGCCACAAAGTTATGAA
Found at i:892109 original size:31 final size:31
Alignment explanation
Indices: 892074--892137 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
892064 AAGTGGGTGT
* * *
892074 CACTGAGTTGTAGACTTTGAAAAAA-GAATGC
1 CACTGAATCGTAGACTGT-AAAAAAGGAATGC
*
892105 CACTGAATCGTGGACTGTAAAAAAGGAATGC
1 CACTGAATCGTAGACTGTAAAAAAGGAATGC
892136 CA
1 CA
892138 TTAAGGATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 6 0.21
31 22 0.79
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
CACTGAATCGTAGACTGTAAAAAAGGAATGC
Found at i:894346 original size:24 final size:24
Alignment explanation
Indices: 894319--894366 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
894309 TAGATATTAA
*
894319 AATTATTATTATATT-TTTTATTTT
1 AATTAATATT-TATTATTTTATTTT
*
894343 AATTAATATTTGTTATTTTATTTT
1 AATTAATATTTATTATTTTATTTT
894367 TAGGTTAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (24 bp):
AATTAATATTTATTATTTTATTTT
Found at i:894593 original size:19 final size:17
Alignment explanation
Indices: 894558--894598 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 17
894548 GTGGAAGATA
894558 TTTT-TTAAAAAATAAT
1 TTTTATTAAAAAATAAT
894574 TTTTATTAAATAACATAAT
1 TTTTATTAAA-AA-ATAAT
894593 TTTTAT
1 TTTTAT
894599 ATTGAAACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.18
17 5 0.23
18 2 0.09
19 11 0.50
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTTATTAAAAAATAAT
Found at i:895238 original size:17 final size:20
Alignment explanation
Indices: 895208--895248 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 20
895198 AATTTGTAAA
895208 ATAA-ATTTTGAAAA-AT-T
1 ATAATATTTTGAAAATATCT
895225 ATAATATTTT-AAAATATCT
1 ATAATATTTTGAAAATATCT
895244 ATAAT
1 ATAAT
895249 TAATGTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 8 0.38
18 7 0.33
19 6 0.29
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
ATAATATTTTGAAAATATCT
Found at i:895368 original size:25 final size:24
Alignment explanation
Indices: 895323--895380 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
895313 TGATTAAAAA
*
895323 ATAATATTTTAAAACTAAATACTTT
1 ATAATATTTTAAAACTAAATA-ATT
*
895348 ATAATATTTTAATAA-TTAATAATT
1 ATAATATTTTAA-AACTAAATAATT
895372 -TAATATTTT
1 ATAATATTTT
895381 CATCAATAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 9 0.30
24 2 0.07
25 17 0.57
26 2 0.07
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (24 bp):
ATAATATTTTAAAACTAAATAATT
Found at i:895550 original size:19 final size:20
Alignment explanation
Indices: 895501--895550 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 20
895491 GAACTTTGTT
895501 ATTTA-CATTGTTTAATTAAA
1 ATTTATCATT-TTTAATTAAA
895521 ATTT-TCAATTTTT-ATTAAA
1 ATTTATC-ATTTTTAATTAAA
*
895540 TTTTATCATTT
1 ATTTATCATTT
895551 AACTTTAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 13 0.50
20 10 0.38
21 3 0.12
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (20 bp):
ATTTATCATTTTTAATTAAA
Found at i:895635 original size:21 final size:21
Alignment explanation
Indices: 895609--895659 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
895599 AACATATTTT
**
895609 AATAATATTTTAAT-AATTAAA
1 AATAATAAATTAATCAA-TAAA
895630 AATAATAAATTAATCAATAAA
1 AATAATAAATTAATCAATAAA
*
895651 AATATTAAA
1 AATAATAAA
895660 AATTAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAATAAATTAATCAATAAA
Found at i:895885 original size:29 final size:29
Alignment explanation
Indices: 895853--895919 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
895843 CAAATCAGTT
*
895853 AAAATTAATATTGATTAATAAAATT-ATCAA
1 AAAATTAA-ATTGAGTAATAAAATTAAT-AA
* *
895883 AAAA-CAAATTGAGTGATAAAATTAATAA
1 AAAATTAAATTGAGTAATAAAATTAATAA
895911 AAAATTAAA
1 AAAATTAAA
895920 ATTTAATTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
28 20 0.65
29 7 0.23
30 4 0.13
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (29 bp):
AAAATTAAATTGAGTAATAAAATTAATAA
Found at i:896420 original size:16 final size:17
Alignment explanation
Indices: 896389--896424 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
896379 ACATATATAT
896389 TATTTATATAATAAAAA
1 TATTTATATAATAAAAA
*
896406 TATTTTTAT-ATAAAAA
1 TATTTATATAATAAAAA
896422 TAT
1 TAT
896425 AAAATTACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTTATATAATAAAAA
Found at i:896575 original size:2 final size:2
Alignment explanation
Indices: 896570--896616 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
896560 TTAAAAAAAT
*
896570 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
896612 TA TA T
1 TA TA T
896617 TCTGGTTGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:897619 original size:23 final size:23
Alignment explanation
Indices: 897567--897619 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
897557 ATTTTATTGA
* *
897567 TATTATATAAATTTATATATTAT
1 TATTAAATAAATTAATATATTAT
* *
897590 TAATAAATTAATTAATATTATT-T
1 TATTAAATAAATTAATA-TATTAT
897613 TATTAAA
1 TATTAAA
897620 AATAAAATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TATTAAATAAATTAATATATTAT
Found at i:898568 original size:37 final size:38
Alignment explanation
Indices: 898527--898600 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
898517 TAAAATAAAA
898527 AATTTTAAAAATAATT-AAAT-AATATTATTTTAATTTT
1 AATTTTAAAAA-AATTAAAATAAATATTATTTTAATTTT
*
898564 AATTTTAACAAAATTAAAATAAATATTATTTTAATTT
1 AATTTTAAAAAAATTAAAATAAATATTATTTTAATTT
898601 AATAATATCA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
36 4 0.12
37 14 0.41
38 16 0.47
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (38 bp):
AATTTTAAAAAAATTAAAATAAATATTATTTTAATTTT
Found at i:898613 original size:37 final size:37
Alignment explanation
Indices: 898539--898618 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
898529 TTTTAAAAAT
**
898539 AATT-AAATAATATTATTTTAATTTTAATTTTAACAA
1 AATTAAAATAATATTATTTTAATTTTAATAATAACAA
*
898575 AATTAAAATAAATATTATTTTAA-TTTAATAATATCAA
1 AATTAAAAT-AATATTATTTTAATTTTAATAATAACAA
*
898612 AAATAAA
1 AATTAAA
898619 CACTATCTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
36 4 0.11
37 21 0.55
38 13 0.34
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (37 bp):
AATTAAAATAATATTATTTTAATTTTAATAATAACAA
Found at i:899467 original size:119 final size:116
Alignment explanation
Indices: 899199--899440 Score: 292
Period size: 116 Copynumber: 2.1 Consensus size: 116
899189 TAAAAAAATT
* * *
899199 AAATAAAAATAAAAAAGAT-T-TATTATTATTAATTTTTAATAAAATTAAAAATAATATTTAATT
1 AAATAAAAATAAAAAA-ATGTAAATAATTA-TAATTTTTAATAAAATAAAAAATAATATTTAATT
* * *
899262 AAGTGTAAAAAATTACATTAAAAATTAAAATATTAATTATTATGTTTTTATAA
64 AAATGTAAAAAATTACATTAAAAATTAAAATATTAATTACTATATTTTTATAA
*** **
899315 AAATAAAAATAAAAAAATGTTTTTTGTTATAATTTTTAATAAAATAAAAAAAATAATATTTAATT
1 AAATAAAAATAAAAAAATGTAAATAATTATAATTTTTAATAAAAT--AAAAAATAATATTTAATT
* *
899380 AAATTTAAAAATTTTACATTAACAAATTAAAATATTAATTACTATATTTTT-TAA
64 AAATGTAAAAA-ATTACATTAA-AAATTAAAATATTAATTACTATATTTTTATAA
899434 AAATAAA
1 AAATAAA
899441 TTTTAATTTT
Statistics
Matches: 112, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
115 2 0.02
116 33 0.29
117 6 0.05
118 26 0.23
119 19 0.17
120 26 0.23
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (116 bp):
AAATAAAAATAAAAAAATGTAAATAATTATAATTTTTAATAAAATAAAAAATAATATTTAATTAA
ATGTAAAAAATTACATTAAAAATTAAAATATTAATTACTATATTTTTATAA
Found at i:899951 original size:20 final size:20
Alignment explanation
Indices: 899926--899965 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
899916 AAAAAACTTT
899926 TTTTTTATTTTATTT-TAAAA
1 TTTTTTATTTT-TTTATAAAA
899946 TTTTTTATTTTTTTATAAAA
1 TTTTTTATTTTTTTATAAAA
899966 GCATAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTTTATTTTTTTATAAAA
Found at i:900034 original size:134 final size:128
Alignment explanation
Indices: 899803--900152 Score: 464
Period size: 134 Copynumber: 2.7 Consensus size: 128
899793 TATAATAAAT
* *
899803 TTTTTAATTTAAAA-TTTTTATTTTAAAAAACATAATAATTAATATTTTAATTTGTTAATGTATA
1 TTTTT-ATTTAAAATTTTTTATTTTATAAAACATAATAATTAATATTTTAATTTGTTAATATA-A
** *
899867 TTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAATT-ATAATAAAAAACTTTTTTTT
64 TTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAATTAATAATAAAAAACCCTTTTTA
899931 TATTTTATTTTAAAATTTTTTATTTTTTTATAAAAGCATAATAATTAATATTTTAATTTGTTAAT
1 T-TTTTA-TTTAAAATTTTTTA---TTTTATAAAA-CATAATAATTAATATTTTAATTTGTTAAT
* *
899996 ATAATTTTTAAAACTTAATTAAATATTATTTTTAATTTTATTAAAAATTAATAATAATAAACCCT
60 ATAATTTTTTAAACTTAATTAAATATTATTTTT-ATTTTATTAAAAATTAATAATAAAAAACCCT
900061 TTTTA
124 TTTTA
*
900066 TTTTTATTT-AAATTTTTTA-TTT-T-AAA-A-AATAATTAATATTTTAATTTGTTAATGTAAAA
1 TTTTTATTTAAAATTTTTTATTTTATAAAACATAATAATTAATATTTTAATTTGTTAA--TATAA
*
900125 TTTTTTAAATTTAATTAAATATTATTTT
64 TTTTTTAAACTTAATTAAATATTATTTT
900153 ATTAAAAATA
Statistics
Matches: 201, Mismatches: 10, Indels: 25
0.85 0.04 0.11
Matches are distributed among these distances:
123 25 0.12
124 1 0.00
125 30 0.15
126 3 0.01
127 1 0.00
128 5 0.02
129 11 0.05
130 6 0.03
132 10 0.05
133 41 0.20
134 51 0.25
135 17 0.08
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (128 bp):
TTTTTATTTAAAATTTTTTATTTTATAAAACATAATAATTAATATTTTAATTTGTTAATATAATT
TTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAATTAATAATAAAAAACCCTTTTTA
Found at i:900211 original size:123 final size:122
Alignment explanation
Indices: 899970--900221 Score: 289
Period size: 123 Copynumber: 2.0 Consensus size: 122
899960 ATAAAAGCAT
* **
899970 AATAATTAATATTTTAATTTGTTAATATAATTTTTAAAACTTAATTAAATATTATTTTTAATTTT
1 AATAATTAATATTTTAATTTGTTAATAAAATTTTTAAAACTTAATTAAATATTATTTTTAATTAA
* ** *
900035 ATTAAAAATTAATAATAATAAACCCTTTTTATTTTTATTTAAATTTTTTATTTTAAAA
66 AATAAAAATTAATAATAATAAA-CCTTTTTAAATTTATTTAAATTTTTAATTTTAAAA
* *
900093 AATAATTAATATTTTAATTTGTTAATGTAAAATTTTTTAAATTTAATTAAATATTA-TTTT-ATT
1 AATAATTAATATTTTAATTTGTTAA--TAAAATTTTTAAAACTTAATTAAATATTATTTTTAATT
* * * *
900156 AAAAATAATAATTAATACATTAT-TA-TTTTTTAAATTT-TTTAAATTTAATTAATTTTAAAA
64 -AAAATAAAAATTAATA-ATAATAAACCTTTTTAAATTTATTTAAATTT--TTAATTTTAAAA
900216 AATAAT
1 AATAAT
900222 AGACAATTGA
Statistics
Matches: 110, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
121 9 0.08
122 9 0.08
123 45 0.41
124 17 0.15
125 30 0.27
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (122 bp):
AATAATTAATATTTTAATTTGTTAATAAAATTTTTAAAACTTAATTAAATATTATTTTTAATTAA
AATAAAAATTAATAATAATAAACCTTTTTAAATTTATTTAAATTTTTAATTTTAAAA
Found at i:900789 original size:14 final size:14
Alignment explanation
Indices: 900770--900796 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
900760 ATCAAAATGA
900770 ATTTAAATAGTAAT
1 ATTTAAATAGTAAT
900784 ATTTAAATAGTAA
1 ATTTAAATAGTAA
900797 ATAGATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (14 bp):
ATTTAAATAGTAAT
Found at i:900926 original size:5 final size:5
Alignment explanation
Indices: 900916--900950 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
900906 TAATTATTAT
*
900916 ATAAA ATAAA ATAAA GTTAAA ATAAA ATAAA ATAA
1 ATAAA ATAAA ATAAA -ATAAA ATAAA ATAAA ATAA
900951 TTTTAGTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:900926 original size:21 final size:23
Alignment explanation
Indices: 900902--900952 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
900892 AAATTGTAAC
*
900902 AAAATAATTA-TT-ATATAAAAT
1 AAAATAATTAGTTAAAATAAAAT
900923 AAAATAA--AGTTAAAATAAAAT
1 AAAATAATTAGTTAAAATAAAAT
900944 AAAATAATT
1 AAAATAATT
900953 TTAGTCGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 1 0.04
20 2 0.08
21 22 0.88
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (23 bp):
AAAATAATTAGTTAAAATAAAAT
Found at i:906236 original size:2 final size:2
Alignment explanation
Indices: 906229--906268 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
906219 TATGTCGGCA
906229 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
906269 TGCGATAGCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:906765 original size:19 final size:20
Alignment explanation
Indices: 906737--906787 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
906727 TTATGCTTTA
**
906737 TATCGATACATGTTC-ATTG
1 TATCGATACATGGACAATTG
*
906756 TATTGATACATGGACAATTG
1 TATCGATACATGGACAATTG
906776 TATCGATACATG
1 TATCGATACATG
906788 AAACTGACAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (20 bp):
TATCGATACATGGACAATTG
Found at i:906841 original size:20 final size:19
Alignment explanation
Indices: 906816--906869 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 19
906806 CTATCATTGT
906816 TTGTATCGATACATG-GCACA
1 TTGTATCGATACATGAG-A-A
906836 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGA-GAA
906856 TTGTATCGATACAT
1 TTGTATCGATACAT
906870 TGCTTCAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACATGAGAA
Found at i:913027 original size:13 final size:13
Alignment explanation
Indices: 913009--913033 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
912999 CAATATTCTT
913009 TGTATCGATACAC
1 TGTATCGATACAC
913022 TGTATCGATACA
1 TGTATCGATACA
913034 AGGGTTACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:913166 original size:21 final size:22
Alignment explanation
Indices: 913142--913191 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
913132 ATCGAATCTT
* *
913142 CTTCAAATTTCTT-ATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
913163 CTTCAAAATACTTCATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
913185 --TCAAAAT
1 CTTCAAAAT
913192 CATCAACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 7 0.27
21 11 0.42
22 8 0.31
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (22 bp):
CTTCAAAATACTTCATTTTTCA
Found at i:916076 original size:79 final size:78
Alignment explanation
Indices: 915870--916157 Score: 328
Period size: 78 Copynumber: 3.7 Consensus size: 78
915860 TATTTTGGAG
* ** * * * *
915870 ATAATAACGGGGTTGGCGTATCCCCTTAAAAATAATGGGGTTGGAGTATCCACGGTTGTGAAAAA
1 ATAA-AACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAA
* *
915935 TCGATGATTT-GAAA
65 TTGATGTTTTAG-AA
* * * * *
915949 ATAAAATCGGGATTGGTGCAT-CCCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATAAAAAA
1 ATAAAA-CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAA
916013 TTGATGTTTTAGAA
65 TTGATGTTTTAGAA
* *
916027 ATAAAACTGGGGTTGAAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAA
1 ATAAAAC-GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAA
* *
916092 TTAATATTTTAGAA
65 TTGATGTTTTAGAA
* * * *
916106 ATAAAGCCGGGTTGGGGTATCCTCTCGAAAATAACGGGGTTGGAGTATCCCC
1 ATAAAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
916158 TCGAAAATAA
Statistics
Matches: 178, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
77 1 0.01
78 103 0.58
79 74 0.42
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (78 bp):
ATAAAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAAT
TGATGTTTTAGAA
Found at i:916138 original size:30 final size:29
Alignment explanation
Indices: 916104--916183 Score: 94
Period size: 28 Copynumber: 2.8 Consensus size: 29
916094 AATATTTTAG
* *
916104 AAATAAAGCCGGGTTGGGGTATCCTCTCGA
1 AAATAAA-CCGGGTTGGAGTATCCCCTCGA
*
916134 AAAT-AACGGGGTTGGAGTATCCCCTCGA
1 AAATAAACCGGGTTGGAGTATCCCCTCGA
916162 AAAT-AA-CGGGATTGGAGTATCC
1 AAATAAACCGGG-TTGGAGTATCC
916184 TCGATGAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
27 3 0.07
28 36 0.80
29 2 0.04
30 4 0.09
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (29 bp):
AAATAAACCGGGTTGGAGTATCCCCTCGA
Found at i:916147 original size:28 final size:28
Alignment explanation
Indices: 916114--916185 Score: 117
Period size: 28 Copynumber: 2.6 Consensus size: 28
916104 AAATAAAGCC
*
916114 GGGTTGGGGTATCCTCTCGAAAATAACG
1 GGGTTGGAGTATCCTCTCGAAAATAACG
*
916142 GGGTTGGAGTATCCCCTCGAAAATAACG
1 GGGTTGGAGTATCCTCTCGAAAATAACG
*
916170 GGATTGGAGTATCCTC
1 GGGTTGGAGTATCCTC
916186 GATGAAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (28 bp):
GGGTTGGAGTATCCTCTCGAAAATAACG
Found at i:916159 original size:106 final size:104
Alignment explanation
Indices: 916035--916261 Score: 312
Period size: 106 Copynumber: 2.2 Consensus size: 104
916025 AAATAAAACT
* * *
916035 GGGGTTGAAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCG---ATGAAAAATTAATATT
* * * * *
916100 TTAGAAATAAAGCC-GGGTTGGGGTATCCTCTCGAAAATAAC
63 TTAAAAATAAAACCGGGGTTAGAGTATCCCCTCGAAAATAAC
* * *
916141 GGGGTTGGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCTCGATGAAAAATTGATGTTTTA
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCGATGAAAAATTAATATTTTA
*
916206 AAAATAAAACCGGGGTTAGAGTATCCCCTCGGAAATAAC
66 AAAATAAAACCGGGGTTAGAGTATCCCCTCGAAAATAAC
916245 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
916262 GATTATGAAA
Statistics
Matches: 108, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
103 25 0.23
104 40 0.37
106 43 0.40
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (104 bp):
GGGGTTGGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCGATGAAAAATTAATATTTTA
AAAATAAAACCGGGGTTAGAGTATCCCCTCGAAAATAAC
Found at i:916312 original size:79 final size:76
Alignment explanation
Indices: 916144--916312 Score: 205
Period size: 76 Copynumber: 2.2 Consensus size: 76
916134 AAATAACGGG
*
916144 GTTGGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCTCGATGAAAAATTGATGTTTTAAAA
1 GTTGGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCGATGAAAAATTGATGTTTTAAAA
*
916209 ATAAAACCGGG
66 ATAAAACCGGA
* * * *
916220 GTTAGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAGTT-AGTGTTTT
1 GTTGGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCG---ATGAAAAATTGA-TGTTTT
* **
916284 GAAAATAAAATTGGA
62 AAAAATAAAACCGGA
*
916299 GTTGGAATATCCCC
1 GTTGGAGTATCCCC
916313 GATTGCGGAG
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
76 39 0.50
78 1 0.01
79 38 0.49
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (76 bp):
GTTGGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCGATGAAAAATTGATGTTTTAAAA
ATAAAACCGGA
Found at i:916341 original size:130 final size:130
Alignment explanation
Indices: 916193--916442 Score: 378
Period size: 130 Copynumber: 1.9 Consensus size: 130
916183 CTCGATGAAA
* *
916193 AATTGATGTTTTAAAAATAAAACCGGGGTTAGAGTATCCCCTCGGAAATAACGGGGTTGGAGTAT
1 AATTGATGTTTCAAAAATAAAACCGGGGTTAGAGTATCCCCTAGGAAATAACGGGGTTGGAGTAT
* ** *
916258 CCCCGATTATGAAAAGTT-AGTGTTTT-GAAAATAAAATTGGAGTTGGAATATCCCCGATTGCGG
66 CCCCGATTATGAAAAATTGA-TGTTTTAG-AAATAAAACCGGAGTTAGAATATCCCCGATTGCGG
916321 AG
129 AG
* * *
916323 AATTGGTGTTTCAGAAATAAAACCGGGGTTGGAGTATCCCCTAGGAAATAACGGGGTTGGAGTAT
1 AATTGATGTTTCAAAAATAAAACCGGGGTTAGAGTATCCCCTAGGAAATAACGGGGTTGGAGTAT
*
916388 CCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGAGTTAGAGTATCCCC
66 CCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGAGTTAGAATATCCCC
916443 TCGAAAATAA
Statistics
Matches: 108, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
130 106 0.98
131 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (130 bp):
AATTGATGTTTCAAAAATAAAACCGGGGTTAGAGTATCCCCTAGGAAATAACGGGGTTGGAGTAT
CCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGAGTTAGAATATCCCCGATTGCGGAG
Found at i:916389 original size:79 final size:78
Alignment explanation
Indices: 916299--916595 Score: 343
Period size: 79 Copynumber: 3.8 Consensus size: 78
916289 TAAAATTGGA
* * * * * *
916299 GTTGGAATATCCCCGATTGCGGAGAATTGGTGTTTCAGAAATAAAACCGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTG-GAAAAATTGATGTTTTAGAAATAAAACCGGAGTTGGAGTATCCCC
*
916364 TAGGAAATAACGGG
65 TAGAAAATAACGGG
* *
916378 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGAGTTAGAGTATCCCC
1 GTTGGAGTATCCCCGATT-GGAAAAATTGATGTTTTAGAAATAAAACCGGAGTTGGAGTATCCCC
*
916443 TCGAAAATAACGGG
65 TAGAAAATAACGGG
* * *
916457 ATTGGAGTATCCCCGA-T-GAAAAATTGATGTTTTAGAAATAAAATCAGG-GTTGGAGTGTCCCC
1 GTTGGAGTATCCCCGATTGGAAAAATTGATGTTTTAGAAATAAAA-CCGGAGTTGGAGTATCCCC
916519 TCA-AAAATAACGGG
65 T-AGAAAATAACGGG
* * * * * *
916533 GTTGGAGTAT-CCTGATTGTGAAAAGTCGGTGTTTTGGAAATAAAATCGGAGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTG-GAAAAATTGATGTTTTAGAAATAAAACCGGAGTTGGAGTATCCC
916596 TGATTATGGA
Statistics
Matches: 187, Mismatches: 24, Indels: 15
0.83 0.11 0.07
Matches are distributed among these distances:
75 4 0.02
76 60 0.32
77 5 0.03
78 35 0.19
79 83 0.44
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (78 bp):
GTTGGAGTATCCCCGATTGGAAAAATTGATGTTTTAGAAATAAAACCGGAGTTGGAGTATCCCCT
AGAAAATAACGGG
Found at i:916526 original size:76 final size:76
Alignment explanation
Indices: 916323--916544 Score: 295
Period size: 76 Copynumber: 2.9 Consensus size: 76
916313 GATTGCGGAG
* * * *
916323 AATTGGTGTTTCAGAAATAAAACCGGGGTTGGAGTATCCCCT-AGGAAATAACGGGGTTGGAGTA
1 AATTGATGTTTTAGAAATAAAA-CAGGGTTGGAGTATCCCCTCA-AAAATAACGGGGTTGGAGTA
916387 TCCCCGATTATGAAA
64 TCCCCG--TATGAAA
* * * *
916402 AATTGATGTTTTAGAAATAAAACCGGAGTTAGAGTATCCCCTCGAAAATAACGGGATTGGAGTAT
1 AATTGATGTTTTAGAAATAAAACAGG-GTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTAT
916467 CCCCG-ATGAAA
65 CCCCGTATGAAA
*
916478 AATTGATGTTTTAGAAATAAAATCAGGGTTGGAGTGTCCCCTCAAAAATAACGGGGTTGGAGTAT
1 AATTGATGTTTTAGAAATAAAA-CAGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTAT
916543 CC
65 CC
916545 TGATTGTGAA
Statistics
Matches: 128, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
76 64 0.50
77 3 0.02
78 3 0.02
79 58 0.45
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (76 bp):
AATTGATGTTTTAGAAATAAAACAGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATC
CCCGTATGAAA
Found at i:916615 original size:51 final size:51
Alignment explanation
Indices: 916533--916694 Score: 195
Period size: 51 Copynumber: 3.2 Consensus size: 51
916523 AAATAACGGG
*
916533 GTTGGAGTAT-CCTGATTGT-GAAAAGTCGGTGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCTGATTATGGAAAA-TCGGTGTTTTGGAAATAAAATCGGA
* *
916583 GTTGGAGTATCCCTGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCTGATTATGGAAAATCGGTGTTTTGGAAATAAAATCGGA
* * * * * * *
916634 GTTGGAGTATCCCTAATTAAGAAAAATTGATGTTTTGGAAATGAAACCGG-
1 GTTGGAGTATCCCTGATTATGGAAAATCGGTGTTTTGGAAATAAAATCGGA
916684 GATTGGAGTAT
1 G-TTGGAGTAT
916695 TCCCGAGATG
Statistics
Matches: 98, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
50 11 0.11
51 82 0.84
52 5 0.05
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCTGATTATGGAAAATCGGTGTTTTGGAAATAAAATCGGA
Found at i:917888 original size:17 final size:17
Alignment explanation
Indices: 917866--917899 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
917856 ATTGAGGACA
917866 GAAATGCATGAACCAAG
1 GAAATGCATGAACCAAG
917883 GAAATGCATGAACCAAG
1 GAAATGCATGAACCAAG
917900 ATGACATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.12
Consensus pattern (17 bp):
GAAATGCATGAACCAAG
Found at i:919091 original size:20 final size:20
Alignment explanation
Indices: 919066--919133 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
919056 AAACTTCCTA
919066 GATGTATCGATACAAAGATC
1 GATGTATCGATACAAAGATC
919086 GATGTATCGATAC----A--
1 GATGTATCGATACAAAGATC
*
919100 -ATGTATCGATATAAAGATC
1 GATGTATCGATACAAAGATC
919119 GATGTATCGATACAA
1 GATGTATCGATACAA
919134 TGTATCGATA
Statistics
Matches: 39, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
13 11 0.28
16 1 0.03
17 1 0.03
20 26 0.67
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (20 bp):
GATGTATCGATACAAAGATC
Found at i:919105 original size:13 final size:13
Alignment explanation
Indices: 919087--919145 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
919077 ACAAAGATCG
919087 ATGTATCGATACA
1 ATGTATCGATACA
*
919100 ATGTATCGATATA
1 ATGTATCGATACA
*
919113 A---A--GAT-CG
1 ATGTATCGATACA
919120 ATGTATCGATACA
1 ATGTATCGATACA
919133 ATGTATCGATACA
1 ATGTATCGATACA
919146 TTCTACAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 12
0.69 0.08 0.23
Matches are distributed among these distances:
7 1 0.03
8 3 0.08
10 2 0.06
12 3 0.08
13 27 0.75
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:919109 original size:33 final size:33
Alignment explanation
Indices: 919067--919145 Score: 149
Period size: 33 Copynumber: 2.4 Consensus size: 33
919057 AACTTCCTAG
919067 ATGTATCGATACAAAGATCGATGTATCGATACA
1 ATGTATCGATACAAAGATCGATGTATCGATACA
*
919100 ATGTATCGATATAAAGATCGATGTATCGATACA
1 ATGTATCGATACAAAGATCGATGTATCGATACA
919133 ATGTATCGATACA
1 ATGTATCGATACA
919146 TTCTACAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (33 bp):
ATGTATCGATACAAAGATCGATGTATCGATACA
Found at i:919222 original size:19 final size:21
Alignment explanation
Indices: 919198--919249 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
919188 AGCGATACAC
*
919198 TGTATCAATACA-TTACT-TA
1 TGTATCAATACATTTACTGAA
*
919217 TGTATCGATACATTTACTGAA
1 TGTATCAATACATTTACTGAA
919238 TGTATCAATACA
1 TGTATCAATACA
919250 AATCATTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 11 0.39
20 5 0.18
21 12 0.43
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (21 bp):
TGTATCAATACATTTACTGAA
Found at i:919582 original size:19 final size:19
Alignment explanation
Indices: 919558--919594 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
919548 ACAAGGGGGA
919558 GAAAATCTTTTTAACCGTG
1 GAAAATCTTTTTAACCGTG
919577 GAAAATCTTTTTAACCGT
1 GAAAATCTTTTTAACCGT
919595 TTTTCAAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (19 bp):
GAAAATCTTTTTAACCGTG
Found at i:920232 original size:19 final size:19
Alignment explanation
Indices: 920208--920258 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
920198 GATACAATGC
***
920208 ATCGATACATGTTTATTGT
1 ATCGATACATGACAATTGT
920227 ATCGATACATAGACAATTGT
1 ATCGATACAT-GACAATTGT
920247 ATCGATACATGA
1 ATCGATACATGA
920259 AACTGGCAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (19 bp):
ATCGATACATGACAATTGT
Found at i:920325 original size:13 final size:13
Alignment explanation
Indices: 920303--920332 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
920293 GATCCATGGC
920303 ACATTGTATCGAT
1 ACATTGTATCGAT
*
920316 ACATTTTATCGAT
1 ACATTGTATCGAT
920329 ACAT
1 ACAT
920333 GAAGAATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (13 bp):
ACATTGTATCGAT
Done.