genome.fa.s693.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold693
Parameters: 2 7 7 80 10 50 1000
Length:  81683

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1880--1914	12	2.9	12	91	0	52	25	0	40	34	1.56
3583--3621	20	2.0	20	94	0	69	46	2	5	46	1.38
5155--5187	14	2.4	14	85	15	50	36	6	0	57	1.23
11559--11605	22	2.1	22	81	14	53	48	19	14	17	1.81
12850--12913	32	2.0	32	84	3	83	50	23	10	15	1.76
12888--12930	16	2.6	17	89	7	63	48	23	16	11	1.78
12888--12931	17	2.7	17	82	6	56	50	22	15	11	1.76
19650--19678	14	2.1	14	93	6	51	13	3	6	75	1.13
20605--20666	24	2.5	24	76	2	61	58	1	1	38	1.18
21386--21415	15	2.0	15	93	0	51	20	3	6	70	1.25
29474--29517	21	2.1	21	91	0	70	38	0	0	61	0.96
29960--30076	58	2.0	58	98	0	225	49	5	24	20	1.69
30694--30733	19	2.1	19	95	0	71	45	5	12	37	1.64
30918--30959	20	2.2	19	95	4	75	52	4	11	30	1.59
34686--34755	24	2.8	25	83	14	83	47	24	8	20	1.78
34688--34784	27	3.7	26	83	4	108	46	24	8	20	1.78
34772--34829	26	2.3	25	91	5	91	25	15	25	32	1.95
39293--39360	27	2.5	27	82	0	82	47	20	8	23	1.78
39348--39405	26	2.3	25	91	5	91	25	15	25	32	1.95
40055--40107	22	2.4	22	75	9	54	54	0	0	45	0.99
40613--40651	2	19.5	2	100	0	78	51	0	0	48	1.00
41710--41748	13	3.1	13	88	3	53	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41723--41773	21	2.3	23	83	12	72	56	0	0	43	0.99
42070--42118	25	1.9	26	88	12	75	79	6	4	10	1.03
42059--42104	20	2.3	18	82	17	56	80	6	2	10	0.98
42081--42121	14	3.2	13	80	20	50	78	4	7	9	1.10
43224--43362	50	2.8	49	89	3	208	34	2	11	51	1.50
43371--43406	18	2.0	18	88	0	54	27	11	11	50	1.72
43389--43485	50	1.9	50	82	0	122	31	13	17	37	1.89
43387--43494	50	2.2	49	78	5	117	31	13	16	37	1.88
47853--48000	50	3.0	50	91	0	242	30	20	17	31	1.96
47855--48023	50	3.4	50	82	6	225	31	18	18	31	1.95
56313--56351	18	2.0	20	85	9	55	46	0	0	53	1.00
60997--61051	25	2.2	25	83	9	67	40	0	0	60	0.97
61046--61124	33	2.5	32	85	6	99	45	1	3	49	1.28
61060--61132	33	2.2	34	92	2	121	47	1	1	49	1.18
61980--62032	21	2.5	22	78	9	65	49	1	0	49	1.12
67428--67455	2	14.0	2	100	0	56	50	0	0	50	1.00
67469--67524	29	2.0	27	82	6	67	51	0	1	46	1.11
68398--68436	17	2.3	16	91	8	60	56	0	2	41	1.13
69093--69128	12	3.1	12	92	4	56	66	0	0	33	0.92
72240--72299	25	2.4	25	80	8	68	41	0	0	58	0.98
72249--72301	22	2.3	24	81	15	67	43	0	0	56	0.99
72297--72378	33	2.5	32	88	7	119	47	1	2	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73839--73882	20	2.0	21	87	12	63	56	0	0	43	0.99
74961--74998	18	2.1	19	85	5	51	52	0	0	47	1.00
76050--76092	18	2.3	20	81	18	58	39	6	0	53	1.28
76537--76561	13	1.9	13	100	0	50	48	0	0	52	1.00
76573--76630	28	2.0	28	87	9	82	50	0	0	50	1.00
76578--76642	28	2.3	28	82	12	80	52	0	0	47	1.00
76600--76656	22	2.7	21	79	15	64	49	0	0	50	1.00
77007--77090	39	2.2	36	76	21	82	47	1	0	51	1.08
77007--77077	18	3.8	19	67	26	53	46	0	0	53	1.00
80893--80927	2	18.0	2	94	5	63	51	0	0	48	1.00
80928--80970	21	2.0	21	95	0	77	44	13	9	32	1.76
81298--81350	22	2.5	22	87	3	72	22	1	18	56	1.51
81335--81472	34	4.1	34	78	10	158	28	4	19	47	1.69
81326--81464	67	2.1	68	87	1	199	28	4	20	46	1.69

Tables:   1

The End!