Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold698

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8757
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:7741 original size:19 final size:19

Alignment explanation


    Indices: 7717--7753  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       7707 AAAATTAATT

                     *         
       7717 ACAATATTGCTTAATGAAG
          1 ACAATATTGATTAATGAAG

                              
       7736 ACAATATTGATTAATGAA
          1 ACAATATTGATTAATGAA

       7754 CAAAATAAAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32


Consensus pattern (19 bp):   
ACAATATTGATTAATGAAG

Found at i:7760 original size:19 final size:19

Alignment explanation


    Indices: 7719--7760  Score: 57
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       7709 AATTAATTAC

                   *        * *
       7719 AATATTGCTTAATGAAGAC
          1 AATATTGATTAATGAACAA

                               
       7738 AATATTGATTAATGAACAA
          1 AATATTGATTAATGAACAA

                
       7757 AATA
          1 AATA

       7761 AATTTATGAT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.50, C:0.07, G:0.12, T:0.31


Consensus pattern (19 bp):   
AATATTGATTAATGAACAA
Done.