Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6555642
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 349864 characters in sequence are not A, C, G, or T
File 34 of 37
Found at i:5924480 original size:24 final size:26
Alignment explanation
Indices: 5924435--5924483 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 26
5924425 TTTGTTTAAG
5924435 TTAATTAATATTATTTTTAAAATTTT
1 TTAATTAATATTATTTTTAAAATTTT
5924461 TTAATTAAT-TT-TTTTTAAAATTT
1 TTAATTAATATTATTTTTAAAATTT
5924484 AATTTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 12 0.52
25 2 0.09
26 9 0.39
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (26 bp):
TTAATTAATATTATTTTTAAAATTTT
Found at i:5924489 original size:15 final size:16
Alignment explanation
Indices: 5924455--5924501 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 16
5924445 TTATTTTTAA
5924455 AATTTTTTAATTAA-TT
1 AATTTTTTAA-TAATTT
5924471 --TTTTTTAA-AATTT
1 AATTTTTTAATAATTT
5924484 AA-TTTTTAATAATTT
1 AATTTTTTAATAATTT
5924499 AAT
1 AAT
5924502 AATTTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
12 2 0.08
13 2 0.08
14 15 0.58
15 7 0.27
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
AATTTTTTAATAATTT
Found at i:5928056 original size:20 final size:20
Alignment explanation
Indices: 5928033--5928072 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
5928023 TTAATAATAA
5928033 ATTTGATAATTTATA-TATTT
1 ATTTGAT-ATTTATATTATTT
*
5928053 ATTTTATATTTATATTATTT
1 ATTTGATATTTATATTATTT
5928073 TTTTATCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (20 bp):
ATTTGATATTTATATTATTT
Found at i:5928065 original size:19 final size:19
Alignment explanation
Indices: 5928041--5928078 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
5928031 AAATTTGATA
5928041 ATTTATA-TATTTATTTTAT
1 ATTTATATTATTT-TTTTAT
5928060 ATTTATATTATTTTTTTAT
1 ATTTATATTATTTTTTTAT
5928079 CATAATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
ATTTATATTATTTTTTTAT
Found at i:5928132 original size:22 final size:22
Alignment explanation
Indices: 5928087--5928149 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 22
5928077 ATCATAATTA
*
5928087 TAATA-AAAATATT-ATATATT
1 TAATATAAAATTTTGATATATT
*
5928107 T-ATA-AACATTTTGATAT-TT
1 TAATATAAAATTTTGATATATT
*
5928126 TAATATAAATTTTTGATATATT
1 TAATATAAAATTTTGATATATT
5928148 TA
1 TA
5928150 TGTATTGACA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 12 0.34
20 8 0.23
21 11 0.31
22 4 0.11
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (22 bp):
TAATATAAAATTTTGATATATT
Found at i:5928924 original size:36 final size:36
Alignment explanation
Indices: 5928850--5928923 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
5928840 CCCTTAATAA
* *
5928850 TTTATTAAATTAATTATTTTATCTTTAGTTATTATT
1 TTTATTAAATTAATAATTTTATCATTAGTTATTATT
* *
5928886 TTTATTTAATTAATAATATTT-TCATTA-TTTTTATT
1 TTTATTAAATTAATAAT-TTTATCATTAGTTATTATT
5928921 TTT
1 TTT
5928924 TTTCTTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
35 10 0.30
36 20 0.61
37 3 0.09
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (36 bp):
TTTATTAAATTAATAATTTTATCATTAGTTATTATT
Found at i:5929506 original size:20 final size:20
Alignment explanation
Indices: 5929437--5929535 Score: 103
Period size: 20 Copynumber: 5.0 Consensus size: 20
5929427 GCTTTTACTA
* *
5929437 AACTTTTTATATGATTTTGAT
1 AACTTTTAATATAATTTT-AT
*
5929458 AGACTTTGAA-ATAATTTTAT
1 A-ACTTTTAATATAATTTTAT
* *
5929478 AGC-TTTAATATGATTTTAT
1 AACTTTTAATATAATTTTAT
*
5929497 AACTTTTAATATAATTTGAT
1 AACTTTTAATATAATTTTAT
*
5929517 AACTTTTAATATACTTTTA
1 AACTTTTAATATAATTTTA
5929536 AAATTAATAA
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
18 4 0.06
19 12 0.19
20 34 0.53
21 8 0.12
22 6 0.09
ACGTcount: A:0.35, C:0.06, G:0.07, T:0.52
Consensus pattern (20 bp):
AACTTTTAATATAATTTTAT
Found at i:5929535 original size:40 final size:40
Alignment explanation
Indices: 5929437--5929528 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 40
5929427 GCTTTTACTA
* *
5929437 AACTTTTTATATGATTTTGATAGACTTTGAAATAATTTTAT
1 AACTTTTAATATGATTTT-ATAGACTTTGAAATAATTTGAT
* *
5929478 AGC-TTTAATATGATTTTATA-ACTTTTAATATAATTTGAT
1 AACTTTTAATATGATTTTATAGACTTTGAA-ATAATTTGAT
5929517 AACTTTTAATAT
1 AACTTTTAATAT
5929529 ACTTTTAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
38 7 0.16
39 14 0.32
40 21 0.48
41 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (40 bp):
AACTTTTAATATGATTTTATAGACTTTGAAATAATTTGAT
Found at i:5929563 original size:21 final size:21
Alignment explanation
Indices: 5929539--5929707 Score: 101
Period size: 21 Copynumber: 8.0 Consensus size: 21
5929529 ACTTTTAAAA
5929539 TTAATAACTTTTGATATAATT
1 TTAATAACTTTTGATATAATT
* *
5929560 TTAATAACCTTTGATATAAGT
1 TTAATAACTTTTGATATAATT
** * * *
5929581 TTGGTAA-TTTGGACATAAAT
1 TTAATAACTTTTGATATAATT
* *
5929601 TTAGTAACTTTTGATACAATT
1 TTAATAACTTTTGATATAATT
* * *
5929622 GTGATTACCTTTT-ATATAATT
1 -TTAATAACTTTTGATATAATT
* * *
5929643 TTTACAAGC-TTTGATGTGAATT
1 TTAATAA-CTTTTGATAT-AATT
* *
5929665 TTGATAACTTTTGATATGATT
1 TTAATAACTTTTGATATAATT
** * *
5929686 TTGTTAACTTTTTATAAAATT
1 TTAATAACTTTTGATATAATT
5929707 T
1 T
5929708 CAAGTTTCAA
Statistics
Matches: 111, Mismatches: 31, Indels: 12
0.72 0.20 0.08
Matches are distributed among these distances:
20 20 0.18
21 66 0.59
22 25 0.23
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.49
Consensus pattern (21 bp):
TTAATAACTTTTGATATAATT
Found at i:5930838 original size:41 final size:43
Alignment explanation
Indices: 5930781--5930875 Score: 158
Period size: 41 Copynumber: 2.3 Consensus size: 43
5930771 TACAATTCAT
* *
5930781 AATGTATCGATACATGCATTTGAAA-TT-TAGTCGTTGGGCTC
1 AATGTATCGATACATGCATTTGAAATTTATAGCCGTTAGGCTC
5930822 AATGTATCGATACATGCATTTGAAATTTATAGCCGTTAGGCTC
1 AATGTATCGATACATGCATTTGAAATTTATAGCCGTTAGGCTC
5930865 AATGTATCGAT
1 AATGTATCGAT
5930876 CCAAACAGTG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
41 25 0.50
42 2 0.04
43 23 0.46
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (43 bp):
AATGTATCGATACATGCATTTGAAATTTATAGCCGTTAGGCTC
Found at i:5930954 original size:19 final size:19
Alignment explanation
Indices: 5930930--5930990 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
5930920 TAATTTAAGG
5930930 TGTATCGATACTATGAAGA
1 TGTATCGATACTATGAAGA
5930949 TGTATCGATAC-----A-A
1 TGTATCGATACTATGAAGA
5930962 TGTATCGATACTATGAAGA
1 TGTATCGATACTATGAAGA
5930981 TGTATCGATA
1 TGTATCGATA
5930991 TCGATACTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
13 12 0.33
14 1 0.03
18 1 0.03
19 22 0.61
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (19 bp):
TGTATCGATACTATGAAGA
Found at i:5930966 original size:13 final size:13
Alignment explanation
Indices: 5930948--5930972 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5930938 TACTATGAAG
5930948 ATGTATCGATACA
1 ATGTATCGATACA
5930961 ATGTATCGATAC
1 ATGTATCGATAC
5930973 TATGAAGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:5930971 original size:32 final size:32
Alignment explanation
Indices: 5930930--5930990 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
5930920 TAATTTAAGG
5930930 TGTATCGATACTATGAAGATGTATCGATACAA
1 TGTATCGATACTATGAAGATGTATCGATACAA
5930962 TGTATCGATACTATGAAGATGTATCGATA
1 TGTATCGATACTATGAAGATGTATCGATA
5930991 TCGATACTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (32 bp):
TGTATCGATACTATGAAGATGTATCGATACAA
Found at i:5932056 original size:18 final size:19
Alignment explanation
Indices: 5932028--5932064 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
5932018 TTTTAAGAAA
*
5932028 CAAATATGACTACTCCTAT
1 CAAATATGACTAATCCTAT
5932047 CAAA-ATGACTAATCCTAT
1 CAAATATGACTAATCCTAT
5932065 GACTAATCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (19 bp):
CAAATATGACTAATCCTAT
Found at i:5933700 original size:13 final size:13
Alignment explanation
Indices: 5933682--5933706 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5933672 AATAGTACCC
5933682 ATGTATCGATACA
1 ATGTATCGATACA
5933695 ATGTATCGATAC
1 ATGTATCGATAC
5933707 TAAAAACTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:5935057 original size:33 final size:32
Alignment explanation
Indices: 5935020--5935084 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
5935010 TACCACTATT
5935020 TGTATCGATACATG-GCACATTGTATCGATACAA
1 TGTATCGATACATGAG-A-ATTGTATCGATACAA
5935053 TGTATCGATACATGAAGAATTGTATCGATACA
1 TGTATCGATACATG-AGAATTGTATCGATACA
5935085 TTGTCCTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 28 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (32 bp):
TGTATCGATACATGAGAATTGTATCGATACAA
Found at i:5935058 original size:13 final size:13
Alignment explanation
Indices: 5935040--5935064 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5935030 CATGGCACAT
5935040 TGTATCGATACAA
1 TGTATCGATACAA
5935053 TGTATCGATACA
1 TGTATCGATACA
5935065 TGAAGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:5936392 original size:33 final size:32
Alignment explanation
Indices: 5936355--5936418 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
5936345 TACAAGCCAA
*
5936355 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
*
5936388 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
5936419 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:5936393 original size:13 final size:13
Alignment explanation
Indices: 5936375--5936400 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5936365 CATTTTGGGA
5936375 TGTATCGATACAT
1 TGTATCGATACAT
5936388 TGTATCGATACAT
1 TGTATCGATACAT
5936401 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5936518 original size:13 final size:13
Alignment explanation
Indices: 5936500--5936524 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5936490 ACATTTGGTC
5936500 ATGTATCGATACA
1 ATGTATCGATACA
5936513 ATGTATCGATAC
1 ATGTATCGATAC
5936525 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:5936557 original size:20 final size:19
Alignment explanation
Indices: 5936534--5936572 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
5936524 CTGTGCATTA
5936534 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
5936554 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
5936573 GTTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:5937140 original size:16 final size:16
Alignment explanation
Indices: 5937119--5937150 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
5937109 CCTTAATAAA
5937119 GCAATTTAACAATTTC
1 GCAATTTAACAATTTC
5937135 GCAATTTAACAATTTC
1 GCAATTTAACAATTTC
5937151 TTTTAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (16 bp):
GCAATTTAACAATTTC
Found at i:5938556 original size:21 final size:21
Alignment explanation
Indices: 5938525--5938569 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
5938515 GCTGTGAGTG
*
5938525 TGGGGGCTGCCCCGTTGCGACC
1 TGGGGGCTG-CCCGTCGCGACC
*
5938547 TGGGGG-TGCCGGTCGCGACC
1 TGGGGGCTGCCCGTCGCGACC
5938567 TGG
1 TGG
5938570 TGAGTGCTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 2 0.10
22 6 0.29
ACGTcount: A:0.04, C:0.31, G:0.47, T:0.18
Consensus pattern (21 bp):
TGGGGGCTGCCCGTCGCGACC
Found at i:5938867 original size:20 final size:21
Alignment explanation
Indices: 5938838--5938879 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
5938828 TTGTTTTTGT
5938838 TGATTATTTTG-A-TGAAAAA
1 TGATTATTTTGAAGTGAAAAA
5938857 TGATGTATTTTGAAGTGAAAAA
1 TGAT-TATTTTGAAGTGAAAAA
5938879 T
1 T
5938880 AAGAAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.20
20 7 0.35
21 1 0.05
22 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (21 bp):
TGATTATTTTGAAGTGAAAAA
Found at i:5945182 original size:20 final size:20
Alignment explanation
Indices: 5945157--5945211 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
5945147 TTACAAGCCA
5945157 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATTTTGGG
5945177 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATTTTGGG
5945197 ATGTATCGATACATT
1 ATGTATCGATACATT
5945212 GTATCGATAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTGGG
Found at i:5945216 original size:13 final size:13
Alignment explanation
Indices: 5945198--5945223 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5945188 CATTTTGGGA
5945198 TGTATCGATACAT
1 TGTATCGATACAT
5945211 TGTATCGATACAT
1 TGTATCGATACAT
5945224 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5945220 original size:33 final size:32
Alignment explanation
Indices: 5945178--5945241 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
5945168 CATTTTGGGA
*
5945178 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
*
5945211 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
5945242 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:5945330 original size:20 final size:21
Alignment explanation
Indices: 5945283--5945335 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
5945273 GCCAATCACC
*
5945283 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
5945304 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
5945324 TGTATCGATACA
1 TGTATCGATACA
5945336 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:5945341 original size:13 final size:13
Alignment explanation
Indices: 5945323--5945347 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5945313 ACATTTGGTC
5945323 ATGTATCGATACA
1 ATGTATCGATACA
5945336 ATGTATCGATAC
1 ATGTATCGATAC
5945348 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:5945380 original size:20 final size:19
Alignment explanation
Indices: 5945357--5945395 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
5945347 CTGTGCATTA
5945357 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
5945377 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
5945396 GTTTTGACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:5949883 original size:16 final size:16
Alignment explanation
Indices: 5949859--5949889 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5949849 AAAGGCTTTC
*
5949859 AAAATTTTTAATAGAA
1 AAAAGTTTTAATAGAA
5949875 AAAAGTTTTAATAGA
1 AAAAGTTTTAATAGA
5949890 GGAAATGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (16 bp):
AAAAGTTTTAATAGAA
Found at i:5951323 original size:13 final size:13
Alignment explanation
Indices: 5951305--5951344 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
5951295 ACAATATTCT
*
5951305 TTGTATCGATACA
1 TTGTATCAATACA
*
5951318 TTGTATTAATACA
1 TTGTATCAATACA
*
5951331 ATGTATCAATACA
1 TTGTATCAATACA
5951344 T
1 T
5951345 GGGTTACTAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (13 bp):
TTGTATCAATACA
Found at i:5952866 original size:33 final size:33
Alignment explanation
Indices: 5952815--5952887 Score: 119
Period size: 33 Copynumber: 2.2 Consensus size: 33
5952805 AGTTGATCAC
* * *
5952815 TTCACTTTCGCAGTGCATGGATGGGCACTTTAG
1 TTCACTTTCACAGCGCATGGATGAGCACTTTAG
5952848 TTCACTTTCACAGCGCATGGATGAGCACTTTAG
1 TTCACTTTCACAGCGCATGGATGAGCACTTTAG
5952881 TTCACTT
1 TTCACTT
5952888 AACTGACGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (33 bp):
TTCACTTTCACAGCGCATGGATGAGCACTTTAG
Found at i:5954155 original size:28 final size:28
Alignment explanation
Indices: 5954074--5954155 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
5954064 TTTTGGAGAT
*
5954074 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
5954102 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
5954130 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
5954156 TGTGAAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:5954297 original size:51 final size:51
Alignment explanation
Indices: 5954138--5954308 Score: 189
Period size: 51 Copynumber: 3.3 Consensus size: 51
5954128 GAAATAACGA
* * *
5954138 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * * * * *
5954190 AATTGGAGTATCCTCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
5954243 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
5954294 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
5954309 TCAGAAATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.40
52 17 0.18
53 31 0.32
54 10 0.10
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:5954325 original size:28 final size:28
Alignment explanation
Indices: 5954291--5954363 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 28
5954281 AAAATAAAGT
5954291 CGGGGTTGGAGTATCCCCTC-AGAAATAA
1 CGGGGTTGGAGTATCCCCTCGAG-AATAA
*
5954319 CGGGGTTGGAGTAT--CCTCGATGATTAA
1 CGGGGTTGGAGTATCCCCTCGA-GAATAA
*
5954346 CGGGGTTGGAGTGTCCCC
1 CGGGGTTGGAGTATCCCC
5954364 GATTGTGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
26 4 0.10
27 18 0.46
28 15 0.38
29 2 0.05
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCGAGAATAA
Found at i:5956857 original size:13 final size:13
Alignment explanation
Indices: 5956839--5956864 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5956829 ACAAAGATCC
5956839 ATGTATCGATACA
1 ATGTATCGATACA
5956852 ATGTATCGATACA
1 ATGTATCGATACA
5956865 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:5956860 original size:33 final size:33
Alignment explanation
Indices: 5956818--5956884 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
5956808 AAAATTTCCA
***
5956818 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
5956851 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
5956884 A
1 A
5956885 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:5957019 original size:21 final size:21
Alignment explanation
Indices: 5956995--5957051 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
5956985 CATTTGTAGG
5956995 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
5957016 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
5957037 ATGTATCGATACATT
1 ATGTATCGATACATT
5957052 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:5957062 original size:1 final size:1
Alignment explanation
Indices: 5957056--5957101 Score: 56
Period size: 1 Copynumber: 46.0 Consensus size: 1
5957046 TACATTTAAA
* ***
5957056 TTTTTTTTTTTTTTTTTTGTTTTTTCAATTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5957102 CAAACACTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.04, C:0.02, G:0.02, T:0.91
Consensus pattern (1 bp):
T
Found at i:5957087 original size:21 final size:21
Alignment explanation
Indices: 5957063--5957104 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
5957053 AAATTTTTTT
5957063 TTTTTTTTTTTGTTTTTTCAA
1 TTTTTTTTTTTGTTTTTTCAA
*
5957084 TTTTTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTGTTTTTTCAA
5957105 ACACTTTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.10, C:0.05, G:0.02, T:0.83
Consensus pattern (21 bp):
TTTTTTTTTTTGTTTTTTCAA
Found at i:5957090 original size:22 final size:21
Alignment explanation
Indices: 5957062--5957104 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 21
5957052 TAAATTTTTT
5957062 TTTTTTTTTTTTGTTTTTTCAA
1 TTTTTTTTTTTT-TTTTTTCAA
5957084 TTTTTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTTTTTTTTCAA
5957105 ACACTTTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.09, C:0.05, G:0.02, T:0.84
Consensus pattern (21 bp):
TTTTTTTTTTTTTTTTTTCAA
Found at i:5957783 original size:55 final size:55
Alignment explanation
Indices: 5957697--5958319 Score: 924
Period size: 55 Copynumber: 11.3 Consensus size: 55
5957687 ATAAATTGTA
* * * * * *
5957697 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AAGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
5957752 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
5957807 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
5957862 TCCTGTTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
5957917 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
5957972 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
5958027 TCCTGCTCTTTGAGGACTGGACAA--TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GA-AAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
5958082 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
5958137 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
5958192 TCCTGCTCGTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
5958247 TCCTGCTCTTTGAGGGCTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
5958302 TCCTACTCTTTGGGGACT
1 TCCTGCTCTTTGAGGACT
5958320 AAAAAGCGGA
Statistics
Matches: 528, Mismatches: 25, Indels: 30
0.91 0.04 0.05
Matches are distributed among these distances:
53 2 0.00
54 18 0.03
55 490 0.93
56 16 0.03
57 2 0.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
Found at i:5957910 original size:165 final size:165
Alignment explanation
Indices: 5957697--5958319 Score: 1072
Period size: 165 Copynumber: 3.8 Consensus size: 165
5957687 ATAAATTGTA
* * * * *
5957697 TCCTGCTCATTGAGGAGT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCT
* * *
5957761 TTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTG
65 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGGGGACT-
*
5957826 GAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
129 GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
5957862 TCCTGTTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
5957927 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGGGGACTGA
66 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGGGGACTGA
5957992 AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
131 AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
5958027 TCCTGCTCTTTGAGGACTGGACAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
5958092 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGGGGACTGA
66 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGGGGACTGA
5958157 AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
131 AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
5958192 TCCTGCTCGTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
* *
5958257 TGAGGGCTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTACTCTTTGGGGACT
66 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGGGGACT
5958320 AAAAAGCGGA
Statistics
Matches: 439, Mismatches: 16, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
164 6 0.01
165 429 0.98
166 4 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (165 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGGGGACTGA
AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
Found at i:5959332 original size:11 final size:11
Alignment explanation
Indices: 5959316--5959345 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
5959306 CTTTGTTTTG
*
5959316 TTTTTTTTGTT
1 TTTTTTTTCTT
5959327 TTTTTTTTCTT
1 TTTTTTTTCTT
5959338 TTTTTTTT
1 TTTTTTTT
5959346 TTGAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.03, G:0.03, T:0.93
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:5971825 original size:28 final size:28
Alignment explanation
Indices: 5971744--5971825 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
5971734 TTTTGGAGAT
*
5971744 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
5971772 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
5971800 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
5971826 TGTGAAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:5971967 original size:51 final size:51
Alignment explanation
Indices: 5971808--5971978 Score: 189
Period size: 51 Copynumber: 3.3 Consensus size: 51
5971798 GAAATAACGA
* * *
5971808 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * * * * *
5971860 AATTGGAGTATCCTCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
5971913 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
5971964 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
5971979 TCAGAAATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.40
52 17 0.18
53 31 0.32
54 10 0.10
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:5971995 original size:28 final size:28
Alignment explanation
Indices: 5971961--5972033 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 28
5971951 AAAATAAAGT
5971961 CGGGGTTGGAGTATCCCCTC-AGAAATAA
1 CGGGGTTGGAGTATCCCCTCGAG-AATAA
*
5971989 CGGGGTTGGAGTAT--CCTCGATGATTAA
1 CGGGGTTGGAGTATCCCCTCGA-GAATAA
*
5972016 CGGGGTTGGAGTGTCCCC
1 CGGGGTTGGAGTATCCCC
5972034 GATTGTGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
26 4 0.10
27 18 0.46
28 15 0.38
29 2 0.05
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCGAGAATAA
Found at i:5974525 original size:13 final size:13
Alignment explanation
Indices: 5974507--5974532 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5974497 ACAAAGATCC
5974507 ATGTATCGATACA
1 ATGTATCGATACA
5974520 ATGTATCGATACA
1 ATGTATCGATACA
5974533 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:5974528 original size:33 final size:33
Alignment explanation
Indices: 5974486--5974552 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
5974476 AAAATTTCCA
***
5974486 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
5974519 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
5974552 A
1 A
5974553 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:5974596 original size:19 final size:18
Alignment explanation
Indices: 5974572--5974639 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
5974562 CAGTAGCTAA
5974572 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
5974591 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
5974606 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
5974623 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
5974640 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:5974612 original size:13 final size:13
Alignment explanation
Indices: 5974594--5974618 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5974584 ACAATACTTA
5974594 TGTATCGATACAT
1 TGTATCGATACAT
5974607 TGTATCGATACA
1 TGTATCGATACA
5974619 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5974616 original size:32 final size:32
Alignment explanation
Indices: 5974575--5974637 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
5974565 TAGCTAATTA
*
5974575 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
5974607 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
5974638 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:5974719 original size:21 final size:21
Alignment explanation
Indices: 5974695--5974751 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
5974685 AATTTGTAGG
5974695 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
5974716 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
5974737 ATGTATCGATACATT
1 ATGTATCGATACATT
5974752 TAAAATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:5975708 original size:13 final size:13
Alignment explanation
Indices: 5975690--5975716 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
5975680 ATATATTATG
5975690 CTTTGTATCGATA
1 CTTTGTATCGATA
5975703 CTTTGTATCGATA
1 CTTTGTATCGATA
5975716 C
1 C
5975717 ATGTTCATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.19, G:0.15, T:0.44
Consensus pattern (13 bp):
CTTTGTATCGATA
Found at i:5975729 original size:19 final size:20
Alignment explanation
Indices: 5975705--5975760 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
5975695 TATCGATACT
**
5975705 TTGTATCGATACATGTTC-A
1 TTGTATCGATACATGAACAA
5975724 TTGTATCGATACATGAACAA
1 TTGTATCGATACATGAACAA
*
5975744 ATGTATCGATACATGAA
1 TTGTATCGATACATGAA
5975761 ATTGGCAGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (20 bp):
TTGTATCGATACATGAACAA
Found at i:5978957 original size:79 final size:79
Alignment explanation
Indices: 5978767--5978974 Score: 217
Period size: 79 Copynumber: 2.6 Consensus size: 79
5978757 TGGCGATAAC
* ** * * *
5978767 AACGGGGCTGGAGTATCCCCGATTATGGGAAATTGGTGTTCTAGAAATAAAATCGAGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAATCGAGGTTGGAGT
* *
5978832 GTCCCCTAGGAAAT
66 ATCCCCTAGAAAAT
* * *
5978846 AACAGGGTTGGAGTATCCCTGATTAT-AGAAAATTGATATTTT-GAAAATAAAATCGGGGTTGGA
1 AACGGGGTTGGAGTATCCCCGATTATGA-AAAATTGATATTTTAG-AAATAAAATCGAGGTTGGA
*
5978909 GTATCCTCTCA-AAAAT
64 GTATCCCCT-AGAAAAT
* * *
5978925 AACGGGGTTGGAGTATCCCCGATTTTGAAAAATCGATGA-TTTAGACATAA
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAT-ATTTTAGAAATAA
5978975 GGCAAGGGTT
Statistics
Matches: 106, Mismatches: 17, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
78 1 0.01
79 101 0.95
80 4 0.04
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (79 bp):
AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAATCGAGGTTGGAGT
ATCCCCTAGAAAAT
Found at i:5979009 original size:51 final size:51
Alignment explanation
Indices: 5978929--5979149 Score: 187
Period size: 51 Copynumber: 4.3 Consensus size: 51
5978919 AAAAATAACG
* * * *
5978929 GGGTTGGAGTATCCCCGATTTTGAAAAATCGATGATTTAGACATAAGGCAA
1 GGGTTGAAGTATCCCCGATTATGAGAAATCGATGATTTAGAAATAAGGCAA
* * **
5978980 GGGTTGAAGTATCCCGGATTGTGAGAAATCGATGATTTAGAAATAAGGCCG
1 GGGTTGAAGTATCCCCGATTATGAGAAATCGATGATTTAGAAATAAGGCAA
* ** * * *
5979031 GGGTTGAAGTATCCCCAATTATGAGAAATTAAT-ATTTTGGAAATAAAGC-C
1 GGGTTGAAGTATCCCCGATTATGAGAAATCGATGA-TTTAGAAATAAGGCAA
* * * * * * * *
5979081 GGCATTGGAGCATCCCCGATTGTGAAAAATTGATGCTTTAGAAATAAGGTC-G
1 GG-GTTGAAGTATCCCCGATTATGAGAAATCGATGATTTAGAAATAAGG-CAA
*
5979133 GGGTTGGAGTATCCCCG
1 GGGTTGAAGTATCCCCG
5979150 CGAAAATAAC
Statistics
Matches: 138, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
50 3 0.02
51 132 0.96
52 3 0.02
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (51 bp):
GGGTTGAAGTATCCCCGATTATGAGAAATCGATGATTTAGAAATAAGGCAA
Found at i:5979272 original size:51 final size:51
Alignment explanation
Indices: 5979212--5979336 Score: 171
Period size: 51 Copynumber: 2.5 Consensus size: 51
5979202 AAATTGGTGA
* * * *
5979212 AAAATCGGAGTTAGAGTATCCCTGATTGTGAAAAATTGGTGTTTTGGAAAT
1 AAAATCGGAGTTAGAGTATCCCCGATTATGAAAAATTGATGTTGTGGAAAT
*
5979263 AAAATCGGAGTTAGAGTATCCCCGATTATGGAAAATTGATGTTGTGGAAAT
1 AAAATCGGAGTTAGAGTATCCCCGATTATGAAAAATTGATGTTGTGGAAAT
* *
5979314 AAAA-CTGGGGTTGGAGTATCCCC
1 AAAATC-GGAGTTAGAGTATCCCC
5979337 AAGATGAAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 1 0.02
51 65 0.98
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (51 bp):
AAAATCGGAGTTAGAGTATCCCCGATTATGAAAAATTGATGTTGTGGAAAT
Found at i:5981638 original size:20 final size:20
Alignment explanation
Indices: 5981613--5981720 Score: 90
Period size: 20 Copynumber: 5.8 Consensus size: 20
5981603 AAAAATGCCT
*
5981613 AAATGTATCGATACATTGTA
1 AAATGTATCGATACAATGTA
*
5981633 AAATGTATTGATACAATG-A
1 AAATGTATCGATACAATGTA
*
5981652 GCAATGTATCGATAC-A--T-
1 -AAATGTATCGATACAATGTA
5981669 ---TGTATCGATACAATG-A
1 AAATGTATCGATACAATGTA
* *
5981685 GCAATGTATCGATACAGTGTA
1 -AAATGTATCGATACAATGTA
5981706 AAATGTATCGATACA
1 AAATGTATCGATACA
5981721 TCTAGGTAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 22
0.72 0.06 0.22
Matches are distributed among these distances:
13 11 0.15
14 1 0.01
19 2 0.03
20 56 0.79
21 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.31
Consensus pattern (20 bp):
AAATGTATCGATACAATGTA
Found at i:5981674 original size:13 final size:13
Alignment explanation
Indices: 5981656--5981680 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5981646 CAATGAGCAA
5981656 TGTATCGATACAT
1 TGTATCGATACAT
5981669 TGTATCGATACA
1 TGTATCGATACA
5981681 ATGAGCAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5981678 original size:53 final size:53
Alignment explanation
Indices: 5981616--5981721 Score: 135
Period size: 53 Copynumber: 2.0 Consensus size: 53
5981606 AATGCCTAAA
* * *
5981616 TGTATCGATACATTGTA-AAATGTATTGATACAATG-AGCAATGTATCGATACAT
1 TGTATCGATACAATG-AGAAATGTATCGATACAATGTA-AAATGTATCGATACAT
* *
5981669 TGTATCGATACAATGAGCAATGTATCGATACAGTGTAAAATGTATCGATACAT
1 TGTATCGATACAATGAGAAATGTATCGATACAATGTAAAATGTATCGATACAT
5981722 CTAGGTAAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
52 1 0.02
53 44 0.96
54 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (53 bp):
TGTATCGATACAATGAGAAATGTATCGATACAATGTAAAATGTATCGATACAT
Found at i:5981679 original size:33 final size:33
Alignment explanation
Indices: 5981636--5981705 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
5981626 CATTGTAAAA
* *
5981636 TGTATTGATACAATGAGCAATGTATCGATACAT
1 TGTATCGATACAATGAGCAATGTATCGATACAG
5981669 TGTATCGATACAATGAGCAATGTATCGATACAG
1 TGTATCGATACAATGAGCAATGTATCGATACAG
5981702 TGTA
1 TGTA
5981706 AAATGTATCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (33 bp):
TGTATCGATACAATGAGCAATGTATCGATACAG
Found at i:5982527 original size:17 final size:17
Alignment explanation
Indices: 5982505--5982546 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
5982495 TCCATTTTGT
5982505 TGAGAAGTTCTAGGAGC
1 TGAGAAGTTCTAGGAGC
5982522 TGAGAAGTTCTAGGAGC
1 TGAGAAGTTCTAGGAGC
5982539 TGAGAAGT
1 TGAGAAGT
5982547 CATAGCTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.31, C:0.10, G:0.36, T:0.24
Consensus pattern (17 bp):
TGAGAAGTTCTAGGAGC
Found at i:5984402 original size:3 final size:3
Alignment explanation
Indices: 5984394--5984431 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
5984384 AGTCAACTTT
* *
5984394 ATC ATC ATC ATT ATC ATC ATC ATC ATC TTC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
5984432 TGATGATTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (3 bp):
ATC
Found at i:5985816 original size:13 final size:13
Alignment explanation
Indices: 5985798--5985823 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5985788 TTTTTTGATG
5985798 TTTCTTGTTCTTT
1 TTTCTTGTTCTTT
5985811 TTTCTTGTTCTTT
1 TTTCTTGTTCTTT
5985824 AGCTATTGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.08, T:0.77
Consensus pattern (13 bp):
TTTCTTGTTCTTT
Found at i:5986727 original size:20 final size:20
Alignment explanation
Indices: 5986704--5986768 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 20
5986694 CACACCCAGA
5986704 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
5986724 TGTATCGATACA--A-----
1 TGTATCGATACATTATGCTT
5986737 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
*
5986757 TGTATTGATACA
1 TGTATCGATACA
5986769 ATGTATCGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
13 12 0.32
15 1 0.03
18 1 0.03
20 23 0.62
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTATGCTT
Found at i:5986742 original size:13 final size:13
Alignment explanation
Indices: 5986724--5986748 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5986714 CATTATGCTT
5986724 TGTATCGATACAA
1 TGTATCGATACAA
5986737 TGTATCGATACA
1 TGTATCGATACA
5986749 TTATGCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:5986745 original size:33 final size:33
Alignment explanation
Indices: 5986703--5986780 Score: 147
Period size: 33 Copynumber: 2.4 Consensus size: 33
5986693 ACACACCCAG
5986703 ATGTATCGATACATTATGCTTTGTATCGATACA
1 ATGTATCGATACATTATGCTTTGTATCGATACA
*
5986736 ATGTATCGATACATTATGCTTTGTATTGATACA
1 ATGTATCGATACATTATGCTTTGTATCGATACA
5986769 ATGTATCGATAC
1 ATGTATCGATAC
5986781 TTGTTCATTG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (33 bp):
ATGTATCGATACATTATGCTTTGTATCGATACA
Found at i:5995596 original size:13 final size:13
Alignment explanation
Indices: 5995578--5995602 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5995568 CATGGCACAT
5995578 TGTATCGATACAA
1 TGTATCGATACAA
5995591 TGTATCGATACA
1 TGTATCGATACA
5995603 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:5996593 original size:21 final size:21
Alignment explanation
Indices: 5996569--5996634 Score: 89
Period size: 21 Copynumber: 3.1 Consensus size: 21
5996559 TCATATAATC
5996569 TTGGTAA-ATTCTGATATACTT
1 TTGGTAACATTC-GATATACTT
*
5996590 TTGGTAACATTCGATATAATT
1 TTGGTAACATTCGATATACTT
*
5996611 TTGATAACATTCGATATAACTT
1 TTGGTAACATTCGATAT-ACTT
5996633 TT
1 TT
5996635 ATAACCTTTG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
21 31 0.77
22 9 0.22
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.45
Consensus pattern (21 bp):
TTGGTAACATTCGATATACTT
Found at i:5996627 original size:42 final size:42
Alignment explanation
Indices: 5996561--5996656 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
5996551 GATCCTTTTC
* * *
5996561 ATATAATCTTGGTAAATTCTGATAT-ACTTTTGGTAACATTCG
1 ATATAATTTTGATAAATTCTGATATAACTTTT-ATAACATTCG
* *
5996603 ATATAATTTTGATAACATTC-GATATAACTTTTATAACCTTTG
1 ATATAATTTTGATAA-ATTCTGATATAACTTTTATAACATTCG
*
5996645 ATATTATTTTGA
1 ATATAATTTTGA
5996657 CCGCCTTTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 36 0.78
43 10 0.22
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.46
Consensus pattern (42 bp):
ATATAATTTTGATAAATTCTGATATAACTTTTATAACATTCG
Found at i:5996638 original size:21 final size:22
Alignment explanation
Indices: 5996576--5996656 Score: 89
Period size: 21 Copynumber: 3.8 Consensus size: 22
5996566 ATCTTGGTAA
*
5996576 ATTCTGATAT-ACTTTTGGTAAC
1 ATTC-GATATAACTTTTGATAAC
5996598 ATTCGATATAA-TTTTGATAAC
1 ATTCGATATAACTTTTGATAAC
5996619 ATTCGATATAACTTTT-ATAAC
1 ATTCGATATAACTTTTGATAAC
* * *
5996640 CTTTGATATTA-TTTTGA
1 ATTCGATATAACTTTTGA
5996657 CCGCCTTTGA
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
20 4 0.08
21 39 0.75
22 9 0.17
ACGTcount: A:0.32, C:0.11, G:0.10, T:0.47
Consensus pattern (22 bp):
ATTCGATATAACTTTTGATAAC
Found at i:5996926 original size:278 final size:275
Alignment explanation
Indices: 5996420--5997022 Score: 874
Period size: 278 Copynumber: 2.2 Consensus size: 275
5996410 ATTTTTGGTT
* * * *
5996420 TTGATAACCTTGAATATAATTTTACTAACTCTTATCTTTAATATAATTTTGACAAGCTTATATAT
1 TTGATAACCTTTAATATAATTTTAATAACTTTTATTTTTAATATAATTTTGACAAGCTTATATAT
*
5996485 AGTTTTGTTAACCTTTGAAATGATTTTCACCTTTAATATGATATTATTAGTCTTTGATATGATTT
66 AATTTTGTTAACCTTTGAAATGATTTTCACCTTTAATATGATATTATTAGTCTTTGATATGATTT
* *
5996550 TGATCCTTTTCATATAATCTTGGTAAATTCTGATATACTTTTGGTAACATTCGATATAATTTTGA
131 TGATCCTTTTCATATAATCTTGGTAAATTCTGATATACTTTTGGTAACATTCGAGATAATTTTAA
*
5996615 TAACATTCGATATAACTTTTATAACCTTTGATATTATTTTGACCGCCTTTGATTTAATTTTGTTA
196 TAACATTCGATATAACTTTTATAACCTTTGATATTATTTTGACAGCCTTTGATTTAATTTTGTTA
*
5996680 AAGTTTAATGCAATG
261 AAGTTTAATACAATG
5996695 TTGAT-ACCATTTAATATAATTTTAATAACTTTTATTTTTAATATAATTTTGACAAGCTTATATA
1 TTGATAACC-TTTAATATAATTTTAATAACTTTTATTTTTAATATAATTTTGACAAGCTTATATA
* *
5996759 TAATTTTGTTAACTTTTGAAATGATTTTCATAACCTTTAATATGATTTTATTAGTCTTTGATATG
65 TAATTTTGTTAACCTTTGAAATGATTTTC---ACCTTTAATATGATATTATTAGTCTTTGATATG
* * * *
5996824 ATTTTGATACC-TTTCATATAATCTTGGTAAATT-TGGATATATTTTTGGTAACTTTTGAGATAG
127 ATTTTGAT-CCTTTTCATATAATCTTGGTAAATTCT-GATATACTTTTGGTAACATTCGAGATAA
* * *
5996887 TTTTAATAACATTCGATATAATTTTTATAACCTTTGATATTATTTTGATAGCTTTTGATTTAATT
190 TTTTAATAACATTCGATATAACTTTTATAACCTTTGATATTATTTTGACAGCCTTTGATTTAATT
** *
5996952 TTGTTAACTTTTAATACAATT
255 TTGTTAAAGTTTAATACAATG
* * * * *
5996973 TTGATAACCTTTGATATTATTTTGATAGCTTTTGA-TATT-ATATAATTTTG
1 TTGATAACCTTTAATATAATTTTAATAACTTTT-ATTTTTAATATAATTTTG
5997023 GTCGTCTTTA
Statistics
Matches: 294, Mismatches: 26, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
274 3 0.01
275 83 0.28
277 12 0.04
278 190 0.65
279 6 0.02
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.50
Consensus pattern (275 bp):
TTGATAACCTTTAATATAATTTTAATAACTTTTATTTTTAATATAATTTTGACAAGCTTATATAT
AATTTTGTTAACCTTTGAAATGATTTTCACCTTTAATATGATATTATTAGTCTTTGATATGATTT
TGATCCTTTTCATATAATCTTGGTAAATTCTGATATACTTTTGGTAACATTCGAGATAATTTTAA
TAACATTCGATATAACTTTTATAACCTTTGATATTATTTTGACAGCCTTTGATTTAATTTTGTTA
AAGTTTAATACAATG
Found at i:5996943 original size:21 final size:21
Alignment explanation
Indices: 5996730--5997013 Score: 148
Period size: 21 Copynumber: 13.6 Consensus size: 21
5996720 TAACTTTTAT
* * *
5996730 TTTTAATATAATTTTGACAAGC
1 TTTTGATATTATTTTGATAA-C
* * *
5996752 TTAT-ATATAATTTTGTTAAC
1 TTTTGATATTATTTTGATAAC
* * *
5996772 TTTTGAAATGATTTTCATAAC
1 TTTTGATATTATTTTGATAAC
* * * * *
5996793 CTTTAATATGATTTT-ATTAG
1 TTTTGATATTATTTTGATAAC
*
5996813 TCTTTGATATGATTTTGAT-AC
1 T-TTTGATATTATTTTGATAAC
* * * * * *
5996834 CTTTCATATAATCTTGGTAAA
1 TTTTGATATTATTTTGATAAC
* *
5996855 TTTGGATA-TATTTTTGGTAAC
1 TTTTGATATTA-TTTTGATAAC
* *
5996876 TTTTGAGA-TAGTTTTAATAAC
1 TTTTGATATTA-TTTTGATAAC
* * * *
5996897 ATTCGATATAATTTTTATAAC
1 TTTTGATATTATTTTGATAAC
* *
5996918 CTTTGATATTATTTTGATAGC
1 TTTTGATATTATTTTGATAAC
*
5996939 TTTTGAT-TTAATTTTGTTAAC
1 TTTTGATATT-ATTTTGATAAC
* **
5996960 TTTTAATACAATTTTGATAAC
1 TTTTGATATTATTTTGATAAC
* *
5996981 CTTTGATATTATTTTGATAGC
1 TTTTGATATTATTTTGATAAC
5997002 TTTTGATATTAT
1 TTTTGATATTAT
5997014 ATAATTTTGG
Statistics
Matches: 198, Mismatches: 56, Indels: 17
0.73 0.21 0.06
Matches are distributed among these distances:
20 23 0.12
21 169 0.85
22 6 0.03
ACGTcount: A:0.30, C:0.08, G:0.11, T:0.51
Consensus pattern (21 bp):
TTTTGATATTATTTTGATAAC
Found at i:5997363 original size:21 final size:20
Alignment explanation
Indices: 5997339--5997386 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
5997329 TTTTTATTTA
*
5997339 ATTTTATTAACATTTGATATG
1 ATTTTA-TAACATTTAATATG
**
5997360 ATTTTGATAGTATTTAATATG
1 ATTTT-ATAACATTTAATATG
5997381 ATTTTA
1 ATTTTA
5997387 ACTTTTTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 21 0.91
22 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.54
Consensus pattern (20 bp):
ATTTTATAACATTTAATATG
Found at i:5997510 original size:21 final size:21
Alignment explanation
Indices: 5997443--5997519 Score: 75
Period size: 21 Copynumber: 3.7 Consensus size: 21
5997433 ATTGGTAGCT
* *
5997443 TTTAATACAATTTTGATAATC
1 TTTAATATAATTTTGACAATC
* *
5997464 TTTGATATAATTTT-AGCAATA
1 TTTAATATAATTTTGA-CAATC
* *
5997485 ATTAATATAATTTTGACAACC
1 TTTAATATAATTTTGACAATC
*
5997506 TTTAATATGATTTT
1 TTTAATATAATTTT
5997520 CGTAACCTTT
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
20 1 0.02
21 42 0.95
22 1 0.02
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.48
Consensus pattern (21 bp):
TTTAATATAATTTTGACAATC
Found at i:5997651 original size:21 final size:21
Alignment explanation
Indices: 5997627--5997677 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
5997617 TCAATGATAT
5997627 AATTTTGACAACCCTTAATAC
1 AATTTTGACAACCCTTAATAC
** ** *
5997648 AATTTTGGTAACTTTTAATAT
1 AATTTTGACAACCCTTAATAC
5997669 AATTTTGAC
1 AATTTTGAC
5997678 TATATTCTAT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (21 bp):
AATTTTGACAACCCTTAATAC
Found at i:5997773 original size:11 final size:11
Alignment explanation
Indices: 5997660--5997779 Score: 69
Period size: 11 Copynumber: 11.4 Consensus size: 11
5997650 TTTTGGTAAC
*
5997660 TTTTAATATAA
1 TTTTGATATAA
5997671 TTTTGACTAT-A
1 TTTTGA-TATAA
* *
5997682 TTCT-ATATGA
1 TTTTGATATAA
5997692 TTTT-A-ATAA
1 TTTTGATATAA
*
5997701 TATTTGATATGA
1 T-TTTGATATAA
* *
5997713 TTTTCATGT--
1 TTTTGATATAA
*
5997722 TTTTGATGTAA
1 TTTTGATATAA
5997733 TTTTGATA-ACA
1 TTTTGATATA-A
*
5997744 -TTTGATGTAA
1 TTTTGATATAA
5997754 CTTTTGATATAA
1 -TTTTGATATAA
5997766 TTTTGATA-AA
1 TTTTGATATAA
5997776 TTTT
1 TTTT
5997780 ATAGTTTTGA
Statistics
Matches: 87, Mismatches: 11, Indels: 23
0.72 0.09 0.19
Matches are distributed among these distances:
9 15 0.17
10 23 0.26
11 33 0.38
12 16 0.18
ACGTcount: A:0.32, C:0.04, G:0.10, T:0.54
Consensus pattern (11 bp):
TTTTGATATAA
Found at i:5997975 original size:27 final size:28
Alignment explanation
Indices: 5997936--5997990 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
5997926 ATTTTTCATA
*
5997936 TGATTTTATTAA-TCTTTTGTATAATTT
1 TGATTTTAGTAATTCTTTTGTATAATTT
* * *
5997963 TGATTTTGGTAATTTTTTTTTATAATTT
1 TGATTTTAGTAATTCTTTTGTATAATTT
5997991 GGCAACTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.24, C:0.02, G:0.09, T:0.65
Consensus pattern (28 bp):
TGATTTTAGTAATTCTTTTGTATAATTT
Found at i:5998144 original size:42 final size:44
Alignment explanation
Indices: 5998097--5998181 Score: 113
Period size: 42 Copynumber: 2.0 Consensus size: 44
5998087 TGTTTGACAT
5998097 AATTTTAATAA-TCTTTCATAAAATTTTGA-AACTCTT-TAATAC
1 AATTTTAATAACT-TTTCATAAAATTTTGATAACTCTTGTAATAC
* * *
5998139 AATTTTAATAACTTTTGATATAATTTTGATAACTTTTGTAATA
1 AATTTTAATAACTTTTCATAAAATTTTGATAACTCTTGTAATA
5998182 GTTTTTATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 25 0.68
43 7 0.19
44 5 0.14
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.48
Consensus pattern (44 bp):
AATTTTAATAACTTTTCATAAAATTTTGATAACTCTTGTAATAC
Found at i:5998163 original size:21 final size:21
Alignment explanation
Indices: 5998089--5998201 Score: 88
Period size: 21 Copynumber: 5.4 Consensus size: 21
5998079 TTTCACCATG
*
5998089 TTTGACATAATTTTAATAA-T
1 TTTGATATAATTTTAATAACT
* * *
5998109 CTTTCATAAAATTTTGA-AACT
1 -TTTGATATAATTTTAATAACT
* *
5998130 CTTTAATACAATTTTAATAACT
1 -TTTGATATAATTTTAATAACT
*
5998152 TTTGATATAATTTTGATAACT
1 TTTGATATAATTTTAATAACT
* * *
5998173 TTTG-TAATAGTTTTTATAACC
1 TTTGAT-ATAATTTTAATAACT
5998194 TTTGATAT
1 TTTGATAT
5998202 TTGATAATAC
Statistics
Matches: 75, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
20 3 0.04
21 67 0.89
22 5 0.07
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (21 bp):
TTTGATATAATTTTAATAACT
Found at i:5998241 original size:21 final size:21
Alignment explanation
Indices: 5998095--5998241 Score: 80
Period size: 21 Copynumber: 7.2 Consensus size: 21
5998085 CATGTTTGAC
* **
5998095 ATAATTTTAATAATCTTTCATA
1 ATAATTTTGATAA-CTTTTGTA
*
5998117 A-AATTTTGA-AACTCTT-TA
1 ATAATTTTGATAACTTTTGTA
*
5998135 ATACAATTTTAATAACTTTTG-A
1 AT--AATTTTGATAACTTTTGTA
5998157 TATAATTTTGATAACTTTTGTA
1 -ATAATTTTGATAACTTTTGTA
* * *
5998179 ATAGTTTTTATAACCTTTG--
1 ATAATTTTGATAACTTTTGTA
* *
5998198 AT-A-TTTGATAA-TACTT-AA
1 ATAATTTTGATAACT-TTTGTA
5998216 TATAATTTTGATAACTTTTGTA
1 -ATAATTTTGATAACTTTTGTA
5998238 ATAA
1 ATAA
5998242 ACTTAGTAAT
Statistics
Matches: 95, Mismatches: 15, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
17 9 0.09
18 3 0.03
19 7 0.07
20 3 0.03
21 60 0.63
22 11 0.12
23 2 0.02
ACGTcount: A:0.37, C:0.07, G:0.06, T:0.49
Consensus pattern (21 bp):
ATAATTTTGATAACTTTTGTA
Found at i:5998785 original size:17 final size:17
Alignment explanation
Indices: 5998763--5998801 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
5998753 ACATAAATCA
* * *
5998763 ATTCATTAATTATGTAC
1 ATTCATGAATCATGAAC
5998780 ATTCATGAATCATGAAC
1 ATTCATGAATCATGAAC
5998797 ATTCA
1 ATTCA
5998802 AATTCATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (17 bp):
ATTCATGAATCATGAAC
Found at i:6003433 original size:32 final size:34
Alignment explanation
Indices: 6003386--6003480 Score: 117
Period size: 36 Copynumber: 2.8 Consensus size: 34
6003376 TACAACATTA
6003386 TTTTTC-AAGGCTAAGATAGAAACCTC-CC-TATC
1 TTTTTCAAAGGCTAAGATAG-AACCTCTCCTTATC
**
6003418 -TTTTCACGGGCTAAGATAGAACCTCACTCCTTATC
1 TTTTTCAAAGGCTAAGATAGAACCT--CTCCTTATC
6003453 TTTTTCAAAGGCTAAGATAGAACCTCTC
1 TTTTTCAAAGGCTAAGATAGAACCTCTC
6003481 AATCACTTAG
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
31 10 0.19
32 11 0.21
33 1 0.02
34 5 0.09
35 4 0.08
36 22 0.42
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTTCAAAGGCTAAGATAGAACCTCTCCTTATC
Found at i:6004050 original size:13 final size:13
Alignment explanation
Indices: 6004032--6004056 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6004022 TACCAAGAAC
6004032 ATGTATCGATACA
1 ATGTATCGATACA
6004045 ATGTATCGATAC
1 ATGTATCGATAC
6004057 TAAACAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:6004183 original size:20 final size:21
Alignment explanation
Indices: 6004158--6004201 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
6004148 GATACTTTGA
6004158 ATTATTTTTA-CTTGAAAAAC
1 ATTATTTTTAGCTTGAAAAAC
*
6004178 ATTATTTTTATGCTTGACAAAC
1 ATTATTTTTA-GCTTGAAAAAC
6004200 AT
1 AT
6004202 CTATACTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.48
22 11 0.52
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (21 bp):
ATTATTTTTAGCTTGAAAAAC
Found at i:6007234 original size:21 final size:21
Alignment explanation
Indices: 6007210--6007267 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
6007200 TTCCACTTGC
*
6007210 AATTCATTTCTTTTCTCCTCT
1 AATTCATTTATTTTCTCCTCT
**
6007231 AATTCATTTATTTTCTTTTCT
1 AATTCATTTATTTTCTCCTCT
* *
6007252 AATTCACTTAATTTCT
1 AATTCATTTATTTTCT
6007268 TTTCAAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.59
Consensus pattern (21 bp):
AATTCATTTATTTTCTCCTCT
Found at i:6008879 original size:32 final size:35
Alignment explanation
Indices: 6008834--6008926 Score: 113
Period size: 36 Copynumber: 2.7 Consensus size: 35
6008824 CAACACTATC
6008834 TTTC-AAGGCTAAGATAGAAACCTC-CC-TATC-T
1 TTTCAAAGGCTAAGATAGAAACCTCTCCTTATCTT
** *
6008865 TTTCACGGGCTAAGATAGAACCTCTCTCCTTATCTT
1 TTTCAAAGGCTAAGATAGAAAC-CTCTCCTTATCTT
*
6008901 TTTCAAAAGCTAAGATAGAAACCTCT
1 TTTCAAAGGCTAAGATAGAAACCTCT
6008927 TAATCACTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
31 4 0.08
32 14 0.28
33 3 0.06
34 2 0.04
35 8 0.16
36 19 0.38
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (35 bp):
TTTCAAAGGCTAAGATAGAAACCTCTCCTTATCTT
Found at i:6009635 original size:20 final size:21
Alignment explanation
Indices: 6009610--6009650 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
6009600 GATTCTTTGA
6009610 ATTATTTTTA-CTTGAAAAAC
1 ATTATTTTTAGCTTGAAAAAC
6009630 ATTATTTTTATGCTTGAAAAA
1 ATTATTTTTA-GCTTGAAAAA
6009651 TATCTATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
22 9 0.47
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (21 bp):
ATTATTTTTAGCTTGAAAAAC
Found at i:6011703 original size:31 final size:30
Alignment explanation
Indices: 6011651--6011708 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
6011641 ATCACATGAT
6011651 TTCAACTCATAATATATAGATCCTAGCTTAA
1 TTCAACTCATAATATATAGAT-CTAGCTTAA
6011682 TTCAACTCA-AATCATCA-AGATCTAGCT
1 TTCAACTCATAAT-AT-ATAGATCTAGCT
6011709 AAAATCAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
30 9 0.36
31 15 0.60
32 1 0.04
ACGTcount: A:0.38, C:0.22, G:0.07, T:0.33
Consensus pattern (30 bp):
TTCAACTCATAATATATAGATCTAGCTTAA
Found at i:6014956 original size:12 final size:13
Alignment explanation
Indices: 6014914--6014946 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
6014904 ACAATTGGAC
6014914 ATTTTGTATAT-GA
1 ATTTT-TATATAGA
6014927 ATTTTTATATAGA
1 ATTTTTATATAGA
6014940 ATTTTTA
1 ATTTTTA
6014947 ATTAGATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (13 bp):
ATTTTTATATAGA
Found at i:6015260 original size:28 final size:29
Alignment explanation
Indices: 6015200--6015266 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 29
6015190 CTTCTGTATG
*
6015200 GATTTTTAATTAGAATTCCTATATGTAAA
1 GATTTTTAATTAGAATTCCTACATGTAAA
* * *
6015229 -ATTTTTGATTAGATTTCTTACATG-AAA
1 GATTTTTAATTAGAATTCCTACATGTAAA
6015256 GA-TTTTAATTA
1 GATTTTTAATTA
6015267 AACTATTTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
27 11 0.34
28 21 0.66
ACGTcount: A:0.36, C:0.06, G:0.10, T:0.48
Consensus pattern (29 bp):
GATTTTTAATTAGAATTCCTACATGTAAA
Found at i:6020618 original size:42 final size:42
Alignment explanation
Indices: 6020562--6020648 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
6020552 TTGTAGTTAG
6020562 TAACTTCATTACTTTCAAGATGATTCAAAGACTATGATAAGT
1 TAACTTCATTACTTTCAAGATGATTCAAAGACTATGATAAGT
*
6020604 TAACTTCATTACTTTCAAGATGATTCAAAGACTATTATAAGT
1 TAACTTCATTACTTTCAAGATGATTCAAAGACTATGATAAGT
6020646 TAA
1 TAA
6020649 GTTAAAGAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (42 bp):
TAACTTCATTACTTTCAAGATGATTCAAAGACTATGATAAGT
Found at i:6021545 original size:3 final size:3
Alignment explanation
Indices: 6021537--6021571 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
6021527 GTAACAAAGG
6021537 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
6021572 GCTTTTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6031751 original size:22 final size:22
Alignment explanation
Indices: 6031694--6031751 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
6031684 TAGCCATTAT
*
6031694 TATTATTAACAAGATAGAATTA
1 TATTATTAACAAGATAGAAATA
*
6031716 TATTA--AATGGAAGATAGAAATA
1 TATTATTAA--CAAGATAGAAATA
6031738 TATTATTAACAAGA
1 TATTATTAACAAGA
6031752 ATAACATCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
20 2 0.07
22 25 0.86
24 2 0.07
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (22 bp):
TATTATTAACAAGATAGAAATA
Found at i:6036732 original size:13 final size:13
Alignment explanation
Indices: 6036714--6036739 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6036704 AAAACCCAGA
6036714 TGTATCGATACAT
1 TGTATCGATACAT
6036727 TGTATCGATACAT
1 TGTATCGATACAT
6036740 GAGTTACTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:6038262 original size:33 final size:33
Alignment explanation
Indices: 6038225--6038291 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
6038215 CGAGAGTTGA
*
6038225 TCACTTCACTTTCACAACACAT-GAGTGAGCACT
1 TCACTTCACTCTCACAACACATGGA-TGAGCACT
* *
6038258 TCACTTCACTCTCACAGCGCATGGATGAGCACT
1 TCACTTCACTCTCACAACACATGGATGAGCACT
6038291 T
1 T
6038292 TGGTGCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (33 bp):
TCACTTCACTCTCACAACACATGGATGAGCACT
Found at i:6038520 original size:12 final size:12
Alignment explanation
Indices: 6038505--6038534 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
6038495 TCTGTTTTTC
6038505 TTGCATTATATT
1 TTGCATTATATT
6038517 TTGCATTATATT
1 TTGCATTATATT
6038529 TTGCAT
1 TTGCAT
6038535 GAAGAAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.57
Consensus pattern (12 bp):
TTGCATTATATT
Found at i:6039276 original size:13 final size:13
Alignment explanation
Indices: 6039258--6039284 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6039248 ACATTATGCT
6039258 TTGTATCGATACA
1 TTGTATCGATACA
6039271 TTGTATCGATACA
1 TTGTATCGATACA
6039284 T
1 T
6039285 GTTTATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:6039294 original size:19 final size:19
Alignment explanation
Indices: 6039270--6039325 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
6039260 GTATCGATAC
***
6039270 ATTGTATCGATACATGTTT
1 ATTGTATCGATACATGACA
6039289 ATTGTATCGATACATGGACA
1 ATTGTATCGATACAT-GACA
6039309 ATTGTATCGATACATGA
1 ATTGTATCGATACATGA
6039326 AACTAGCAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (19 bp):
ATTGTATCGATACATGACA
Found at i:6039314 original size:20 final size:20
Alignment explanation
Indices: 6039270--6039324 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
6039260 GTATCGATAC
***
6039270 ATTGTATCGATACAT-GTTT
1 ATTGTATCGATACATGGACA
6039289 ATTGTATCGATACATGGACA
1 ATTGTATCGATACATGGACA
6039309 ATTGTATCGATACATG
1 ATTGTATCGATACATG
6039325 AAACTAGCAG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (20 bp):
ATTGTATCGATACATGGACA
Found at i:6043809 original size:79 final size:78
Alignment explanation
Indices: 6043720--6043924 Score: 243
Period size: 79 Copynumber: 2.6 Consensus size: 78
6043710 AATAAAATCG
* * *
6043720 GGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTAT-AGAAAATCAGTGTT
1 GGGTTAGAGTATCCCCTCGAAAATAAC-GGGTTGGAGTATCCCTGATTATGAG-AAATCAATATT
* *
6043784 TTGAAAATAAGGCCA
64 TTAAAAATAAAGCCA
* * * *
6043799 GGGTTAGAGTAT-CCCTGCAAAAATAACGGGGTTGGAGTACCCCCGATTGTGAGAAATCAATATT
1 GGGTTAGAGTATCCCCT-CGAAAATAAC-GGGTTGGAGTATCCCTGATTATGAGAAATCAATATT
* *
6043863 TTAAAAATAAAGTCG
64 TTAAAAATAAAGCCA
*
6043878 GGGTTAAAGTATCCCCTCGAAAATAACGGGTTTGGAGTATCCCTGAT
1 GGGTTAGAGTATCCCCTCGAAAATAACGGG-TTGGAGTATCCCTGAT
6043925 GAAATAACGG
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 7 0.07
79 93 0.88
80 6 0.06
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (78 bp):
GGGTTAGAGTATCCCCTCGAAAATAACGGGTTGGAGTATCCCTGATTATGAGAAATCAATATTTT
AAAAATAAAGCCA
Found at i:6043916 original size:28 final size:28
Alignment explanation
Indices: 6043876--6043949 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 28
6043866 AAAATAAAGT
**
6043876 CGGGGTTAAAGTATCCCCTCGA-AAATAA
1 CGGGGTTGGAGTATCCCCT-GAGAAATAA
*
6043904 CGGGTTTGGAGTAT-CCCTGATGAAATAA
1 CGGGGTTGGAGTATCCCCTGA-GAAATAA
6043932 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
6043950 GATTATGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
26 2 0.05
27 4 0.10
28 30 0.77
29 3 0.08
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTGAGAAATAA
Found at i:6043995 original size:51 final size:51
Alignment explanation
Indices: 6043936--6044051 Score: 189
Period size: 51 Copynumber: 2.3 Consensus size: 51
6043926 AAATAACGGG
*
6043936 GTTGGAGTATCCCCGATTAT-GAAAAGTTGGTGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGGAAAA-TTGGTGTTTTAGAAATAAAATCGGA
* *
6043987 GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCGGG
1 GTTGGAGTATCCCCGATTATGGAAAATTGGTGTTTTAGAAATAAAATCGGA
6044038 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
6044052 TCGAAAATAA
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
51 56 0.92
52 5 0.08
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGGAAAATTGGTGTTTTAGAAATAAAATCGGA
Found at i:6046440 original size:13 final size:13
Alignment explanation
Indices: 6046422--6046451 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
6046412 GTAAACCCAA
*
6046422 AATGTATCGATAT
1 AATGTATCGATAC
6046435 AATGTATCGATAC
1 AATGTATCGATAC
6046448 AATG
1 AATG
6046452 AACAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:6046460 original size:20 final size:20
Alignment explanation
Indices: 6046435--6046489 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
6046425 GTATCGATAT
6046435 AATGTATCGATACAATGAAC
1 AATGTATCGATACAATGAAC
*
6046455 AATGTATTGATACAATGAAC
1 AATGTATCGATACAATGAAC
6046475 AATGTATCGATACAA
1 AATGTATCGATACAA
6046490 ATTGTGAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (20 bp):
AATGTATCGATACAATGAAC
Found at i:6048077 original size:13 final size:13
Alignment explanation
Indices: 6048059--6048110 Score: 62
Period size: 13 Copynumber: 4.5 Consensus size: 13
6048049 GATACATAGG
6048059 ACATTGTATCGAT
1 ACATTGTATCGAT
6048072 ACATTGTATCGAT
1 ACATTGTATCGAT
6048085 ACA-TG-AT-G--
1 ACATTGTATCGAT
6048093 A-ATTGTATCGAT
1 ACATTGTATCGAT
6048105 ACATTG
1 ACATTG
6048111 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 20 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:6048084 original size:33 final size:33
Alignment explanation
Indices: 6048042--6048110 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
6048032 CTACCAATGT
6048042 TTGTATCGATACAT-AGGACATTGTATCGATACA
1 TTGTATCGATACATGAGGA-ATTGTATCGATACA
*
6048075 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGAGGAATTGTATCGATACA
6048108 TTG
1 TTG
6048111 CTTGTAACGG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 31 0.91
34 3 0.09
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (33 bp):
TTGTATCGATACATGAGGAATTGTATCGATACA
Found at i:6050021 original size:20 final size:21
Alignment explanation
Indices: 6049982--6050021 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
6049972 ATTTCAAATT
*
6049982 TAAATAATAAGATTAATTTTG
1 TAAATAATAAAATTAATTTTG
*
6050003 TAAATAA-AAAATTAGTTTT
1 TAAATAATAAAATTAATTTT
6050022 AACACAGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.42
Consensus pattern (21 bp):
TAAATAATAAAATTAATTTTG
Found at i:6054598 original size:19 final size:20
Alignment explanation
Indices: 6054547--6054599 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
6054537 CTGCCAGTTT
**
6054547 CATGTATCGATACAATTGTG
1 CATGTATCGATACAATTGAA
*
6054567 CATGTGTCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
*
6054586 CATGTATCCATACA
1 CATGTATCGATACA
6054600 TTGTATCGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:6055163 original size:57 final size:57
Alignment explanation
Indices: 6055075--6055241 Score: 325
Period size: 57 Copynumber: 2.9 Consensus size: 57
6055065 TATGCAATGG
6055075 ACACCTTTATCAAACATTATCAGTAAAATTATTTTTTGCATTCCATCATGTGTTTGC
1 ACACCTTTATCAAACATTATCAGTAAAATTATTTTTTGCATTCCATCATGTGTTTGC
6055132 ACACCTTTATCAAACATTATCAGTAAAATTATTTTTTGCATTCCATCATGTGTTTGC
1 ACACCTTTATCAAACATTATCAGTAAAATTATTTTTTGCATTCCATCATGTGTTTGC
*
6055189 ACACCTTTATCAAACATTATCAGTAAAATTATTTTTTGCATTCTATCATGTGT
1 ACACCTTTATCAAACATTATCAGTAAAATTATTTTTTGCATTCCATCATGTGT
6055242 GCCTACTTAT
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
57 109 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.43
Consensus pattern (57 bp):
ACACCTTTATCAAACATTATCAGTAAAATTATTTTTTGCATTCCATCATGTGTTTGC
Found at i:6056301 original size:13 final size:13
Alignment explanation
Indices: 6056283--6056308 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6056273 TTCATACCAA
6056283 CAAACTATCGTAG
1 CAAACTATCGTAG
6056296 CAAACTATCGTAG
1 CAAACTATCGTAG
6056309 ACAACGTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (13 bp):
CAAACTATCGTAG
Found at i:6062493 original size:13 final size:13
Alignment explanation
Indices: 6062475--6062500 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6062465 CACACCCAGA
6062475 TGTATCGATACAT
1 TGTATCGATACAT
6062488 TGTATCGATACAT
1 TGTATCGATACAT
6062501 GTTCTTGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:6063114 original size:32 final size:31
Alignment explanation
Indices: 6063073--6063198 Score: 123
Period size: 32 Copynumber: 4.0 Consensus size: 31
6063063 AAGTGATTGA
6063073 GAGGTTCTATCTTAGCCTTTGTAAAAGATAGG
1 GAGGTTCTATCTTAGCCTTTG-AAAAGATAGG
**
6063105 GAGGTTCTATCTTAGCC-TACAAAAGATAAAGAG
1 GAGGTTCTATCTTAGCCTTTGAAAAGAT--AG-G
* ** *
6063138 AAAGGTTCTATCTTAGCCCGTGAAAAGATAGA
1 -GAGGTTCTATCTTAGCCTTTGAAAAGATAGG
6063170 GAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGG-TTCTATCTTAGCCTTTGAAAAGATAG
6063199 TGTTGTAAGG
Statistics
Matches: 79, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
30 15 0.19
31 6 0.08
32 32 0.41
33 3 0.04
34 16 0.20
35 7 0.09
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.29
Consensus pattern (31 bp):
GAGGTTCTATCTTAGCCTTTGAAAAGATAGG
Found at i:6063574 original size:29 final size:28
Alignment explanation
Indices: 6063521--6063576 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
6063511 TTTTGCCTTA
**
6063521 TTTGCAATTTAGTCCTAAATTTTCAAAT
1 TTTGCAATTTAGTCCTAAACATTCAAAT
6063549 TTTGCAATTTTA-TCCTTAAACATTCAAA
1 TTTGCAA-TTTAGTCC-TAAACATTCAAA
6063577 ATATCACTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.34, C:0.16, G:0.05, T:0.45
Consensus pattern (28 bp):
TTTGCAATTTAGTCCTAAACATTCAAAT
Found at i:6070014 original size:80 final size:79
Alignment explanation
Indices: 6069894--6070101 Score: 220
Period size: 80 Copynumber: 2.6 Consensus size: 79
6069884 GAGATAATAA
* * * * * *** * *
6069894 CGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTCGAGTATCCCTGGTTGTGAGAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-A
*
6069959 -TTAGAAAAAAAAAAT
65 TTTAG-AAAAAAAAAC
*
6069974 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
* ** * *
6070039 TTTGGGAATAAAGC
66 TTAGAAAAAAAAAC
* *
6070053 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCAAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAAT
6070102 GAAATAACGA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
79 52 0.49
80 55 0.51
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
TTAGAAAAAAAAAC
Found at i:6070093 original size:28 final size:28
Alignment explanation
Indices: 6070053--6070124 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
6070043 GGAATAAAGC
** *
6070053 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCAAGGAAATAA
*
6070081 CGGGGTTGGAGTATCCCCAATGAAATAA
1 CGGGGTTGGAGTATCCCCAAGGAAATAA
*
6070109 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
6070125 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCAAGGAAATAA
Found at i:6070116 original size:107 final size:107
Alignment explanation
Indices: 6069974--6070391 Score: 334
Period size: 107 Copynumber: 3.9 Consensus size: 107
6069964 AAAAAAAAAT
* * * * *
6069974 CGGGATTGGAGTATCCCC--TCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT
1 CGGGATTGGAGTATCCCCAAT-G-AAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAATTAGT
* * *
6070037 ATTTTGGGAATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTAA
64 ATTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAA
* * * *
6070081 CGGGGTTGGAGTATCCCCAATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTAT
1 CGGGATTGGAGTATCCCCAATGAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAATTAGTA-
* * *
6070146 TTTTGGAAATAAAATCGGAGTTGGAGTAT-CCC-C-G-ATTAA
65 TTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAA
* * * * **** * * *
6070185 AGGAAAATTGGCGTTTTGAAAAT-AAA-ACCGGGGTTGGAGTATCCCCGATTGTGGAAAAATTAG
1 CGG--GATTGGAGTATCCCCAATGAAATAACGAGGTTGGAGTATCCCCAATTGT-GAAAAATTAG
* * * * *
6070248 TGTTTTAGCAATAAAACCGGGGTTAGATTATCCCCTCGGAAATAA
63 TATTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAA
* * * *
6070293 CGGGGTTGGAGTATCCCCGATG-ATTAAC-AGGGTTGGAGTATCCCCAATTGTGAAGAAATTGGT
1 CGGGATTGGAGTATCCCCAATGAAATAACGA-GGTTGGAGTATCCCCAATTGTGAA-AAATT--A
* * *
6070356 GTTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCC
62 GTATTTTGGAAATAAAACCGGGGTTGGAGTATCCCC
6070392 GATTATAGAA
Statistics
Matches: 238, Mismatches: 57, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
104 52 0.22
105 17 0.07
106 25 0.11
107 82 0.34
108 32 0.13
109 30 0.13
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (107 bp):
CGGGATTGGAGTATCCCCAATGAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAATTAGTAT
TTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAA
Found at i:6070182 original size:52 final size:51
Alignment explanation
Indices: 6070113--6070449 Score: 220
Period size: 52 Copynumber: 6.4 Consensus size: 51
6070103 AAATAACGAG
* *
6070113 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGT-GTTTTGGAAATAAAATCGGA
** * * * * *
6070165 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTGGAAATAAAATCGGA
* * * * *
6070217 GTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGGG
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTGGAAATAAAATCGGA
* * * * *** * *
6070269 GTTAGATTATCCCC--TCG-GAAATAACGGGGTTGGAGTATCCCCGATGAT-TAA-CAGG-
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTGT-T-TTGGA-AATAAAATC-GGA
*
6070324 GTTGGAGTATCCCCAATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATTGGTG--TTTTGGAAATAAAATCGGA
* * *
6070378 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTGGAAATAAAATCGGA
*
6070429 GTTGGAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
6070450 GAGAATTGAG
Statistics
Matches: 219, Mismatches: 43, Indels: 46
0.71 0.14 0.15
Matches are distributed among these distances:
48 4 0.02
49 2 0.01
50 2 0.01
51 36 0.16
52 90 0.41
53 29 0.13
54 26 0.12
55 15 0.07
56 5 0.02
57 4 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAATCGGA
Done.