Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold70
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1110102
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 46923 characters in sequence are not A, C, G, or T
File 6 of 7
Found at i:807409 original size:92 final size:93
Alignment explanation
Indices: 807232--807416 Score: 264
Period size: 92 Copynumber: 2.0 Consensus size: 93
807222 GGCGTCTCCT
* * * *
807232 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTGCCTTTAAGTCCAATATCGC
1 TTTAAGCCCAATATAGCTGACCTTGAATCAACACATTGGCA-C---CCTTTAAGTCCAATATAGC
807297 TGGCCTTAAATCAGCATATTGGCACCTTCATC
62 TGGCCTTAAATCAGCATATTGGCACCTTCATC
* *
807329 TTTAAGTCCAATGTAGCTGACCTTGAATCAACACATTGGCA-CCTTTAAGTCCAATATAGCTGGC
1 TTTAAGCCCAATATAGCTGACCTTGAATCAACACATTGGCACCCTTTAAGTCCAATATAGCTGGC
*
807393 CTTGAATCAGCATATTGGCACCTT
66 CTTAAATCAGCATATTGGCACCTT
807417 TTTTAGATTT
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
92 45 0.56
97 36 0.44
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (93 bp):
TTTAAGCCCAATATAGCTGACCTTGAATCAACACATTGGCACCCTTTAAGTCCAATATAGCTGGC
CTTAAATCAGCATATTGGCACCTTCATC
Found at i:807417 original size:43 final size:44
Alignment explanation
Indices: 807232--807414 Score: 215
Period size: 48 Copynumber: 4.0 Consensus size: 44
807222 GGCGTCTCCT
*
807232 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTGCC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C---CC
* *
807280 TTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C--C--C
* * * *
807329 TTTAAGTCCAATGTAGCTGACCTTGAATCAACACATTGGCA-CC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCC
807372 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
807415 TTTTTTAGAT
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
43 38 0.32
44 1 0.01
45 1 0.01
47 2 0.02
48 40 0.34
49 36 0.31
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (44 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCC
Found at i:807795 original size:52 final size:52
Alignment explanation
Indices: 807739--807867 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
807729 CACTAATCTT
* *
807739 TGTATCGATACATGCTGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
**
807791 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
807843 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
807868 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:811130 original size:208 final size:207
Alignment explanation
Indices: 810719--811133 Score: 704
Period size: 208 Copynumber: 2.0 Consensus size: 207
810709 CCGATCATGC
* *
810719 CTAGCCCGGAATGATCGGTGGCGACTCCAAAATCTCGGTCACTTCGTAGTGACCATTGAAGATCA
1 CTAGCCCGAAATGATCGGTGGCAACTCCAAAATCTCGGTCACTTCGTAGTGACCATTGAAGATCA
* * ****
810784 ATTAGATGGGCGATTTATCTACTGATCTTCCCCTTTAATCAACATACTTTTTGTCATGCCATAGA
66 ATTAGATGGGCGATTCATCTACTGATCTTCCCCTTTAATCAACACACTTCCCATCATGCCATAGA
* *
810849 AATCCCCAATCGCGTGGGATATTAAGTCGAGCGTGCCTCATTTGCCCTATTGCCGGGGTCAAGCG
131 AATCCCCAATCGCGAGGGATATTAAGTCGAGCGTGCCTCATTTGCCCTATCGCCGGGGTCAAGCG
810914 CACGTTACGACA
196 CACGTTACGACA
810926 CTAGCCCGAAATGATCGGTGGCAACTCCAAAATCTCGGTCACTTCGTAGTGACCATTGAAGATCA
1 CTAGCCCGAAATGATCGGTGGCAACTCCAAAATCTCGGTCACTTCGTAGTGACCATTGAAGATCA
*
810991 ATTAGATGGGCGATTCATCTGCTGATCTTCCCCTTTTAATCAACACACTTCCCATCATGCCATAG
66 ATTAGATGGGCGATTCATCTACTGATCTTCCCC-TTTAATCAACACACTTCCCATCATGCCATAG
* *
811056 AAATCCCCAATCGCGAGGGATATTAAGTCGAGTGTGCCTCATTTGCCCTATCGCCGGGGTCGAGC
130 AAATCCCCAATCGCGAGGGATATTAAGTCGAGCGTGCCTCATTTGCCCTATCGCCGGGGTCAAGC
811121 GCACGTTACGACA
195 GCACGTTACGACA
811134 GCTTGGCGAC
Statistics
Matches: 194, Mismatches: 13, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
207 94 0.48
208 100 0.52
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (207 bp):
CTAGCCCGAAATGATCGGTGGCAACTCCAAAATCTCGGTCACTTCGTAGTGACCATTGAAGATCA
ATTAGATGGGCGATTCATCTACTGATCTTCCCCTTTAATCAACACACTTCCCATCATGCCATAGA
AATCCCCAATCGCGAGGGATATTAAGTCGAGCGTGCCTCATTTGCCCTATCGCCGGGGTCAAGCG
CACGTTACGACA
Found at i:814185 original size:34 final size:34
Alignment explanation
Indices: 814092--814321 Score: 219
Period size: 33 Copynumber: 6.9 Consensus size: 34
814082 ATGGCATCTT
* *
814092 CTTTTCAAAGCCCACAACTACATGGCA-CTCTTTTC
1 CTTTT-AAAGCCCACAACTCCGTGGCACCT-TTTTC
* * *
814127 CTTTT-AAGTCCACAATTCCATGGCACCTTTTTC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
814160 TTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC
1 CTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTC
*
814195 CTTTT-AAGTCCACAACTCCGTGGCA-C-----C
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
*
814222 CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTCCC
1 CTTTTAAAGCCCACAACTCCGTGGCAC-CTTTT-TC
* *
814258 CTCTTAAAGCCCACAACTCCGTGGCACCTTATTC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * *
814292 CTTTT-AAGTCCACAACTTCGTGGCATCTTT
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTT
814322 CACCCCTTCA
Statistics
Matches: 163, Mismatches: 20, Indels: 26
0.78 0.10 0.12
Matches are distributed among these distances:
27 6 0.04
28 19 0.12
30 1 0.01
32 1 0.01
33 47 0.29
34 42 0.26
35 20 0.12
36 27 0.17
ACGTcount: A:0.22, C:0.33, G:0.11, T:0.33
Consensus pattern (34 bp):
CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
Found at i:814224 original size:27 final size:28
Alignment explanation
Indices: 814194--814254 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
814184 CACTCTTTTT
*
814194 CCTTTT-AAGTCCACAACTCCGTGGCAC
1 CCTTTTAAAGCCCACAACTCCGTGGCAC
814221 CCTTTTAAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAAGCCCACAACTCCGTGGCAC
*
814249 TCTTTT
1 CCTTTT
814255 CCCCTCTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 6 0.19
28 25 0.81
ACGTcount: A:0.21, C:0.36, G:0.13, T:0.30
Consensus pattern (28 bp):
CCTTTTAAAGCCCACAACTCCGTGGCAC
Found at i:814272 original size:36 final size:36
Alignment explanation
Indices: 814220--814340 Score: 130
Period size: 36 Copynumber: 3.5 Consensus size: 36
814210 CTCCGTGGCA
*
814220 CCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTC
1 CCCTCTTAAAGCCCACAACTCCGTGGCACTCTTTTC
814256 CCCTCTTAAAGCCCACAACTCCGTGGCAC-CTTATT-
1 CCCTCTTAAAGCCCACAACTCCGTGGCACTCTT-TTC
* * *
814291 -CCT-TTTAAGTCCACAACTTCGTGGCA-TC-TTTC
1 CCCTCTTAAAGCCCACAACTCCGTGGCACTCTTTTC
814323 ACCC-CTTCAAAGCCCACA
1 -CCCTCTT-AAAGCCCACA
814341 CAAGTCGGTG
Statistics
Matches: 72, Mismatches: 6, Indels: 15
0.77 0.06 0.16
Matches are distributed among these distances:
31 2 0.03
32 1 0.01
33 21 0.29
34 7 0.10
35 11 0.15
36 30 0.42
ACGTcount: A:0.22, C:0.39, G:0.11, T:0.28
Consensus pattern (36 bp):
CCCTCTTAAAGCCCACAACTCCGTGGCACTCTTTTC
Found at i:814364 original size:32 final size:32
Alignment explanation
Indices: 814328--814482 Score: 231
Period size: 33 Copynumber: 4.8 Consensus size: 32
814318 CTTTCACCCC
814328 TTCAAAGCCCACACAAGTCGGTGGCAACCTTT
1 TTCAAAGCCCACACAAGTCGGTGGCAACCTTT
*
814360 TTCAAAGCCCACACAAGTCGGTGACAACCTTT
1 TTCAAAGCCCACACAAGTCGGTGGCAACCTTT
* **
814392 TTCTAAAGCCCACATAAGTCGGTGGCAACCCCT
1 TTC-AAAGCCCACACAAGTCGGTGGCAACCTTT
*
814425 TT-AAAGCCCACACAAGTCGGTGGCAACCTTC
1 TTCAAAGCCCACACAAGTCGGTGGCAACCTTT
*
814456 TTCAAAAGCCCACACAAGTTGGTGGCA
1 TTC-AAAGCCCACACAAGTCGGTGGCA
814483 TATTCCTTTA
Statistics
Matches: 110, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
31 27 0.25
32 34 0.31
33 49 0.45
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.21
Consensus pattern (32 bp):
TTCAAAGCCCACACAAGTCGGTGGCAACCTTT
Found at i:814452 original size:64 final size:65
Alignment explanation
Indices: 814327--814482 Score: 235
Period size: 64 Copynumber: 2.4 Consensus size: 65
814317 TCTTTCACCC
**
814327 CTTC-AAAGCCCACACAAGTCGGTGGCAACCTTTTTCAAAGCCCACACAAGTCGGTGACAACCTT
1 CTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTTTCAAAGCCCACACAAGTCGGTGACAACCTT
* * * *
814391 TTTCTAAAGCCCACATAAGTCGGTGGCAACCCCTTT-AAAGCCCACACAAGTCGGTGGCAACCTT
1 CTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTTTCAAAGCCCACACAAGTCGGTGACAACCTT
*
814455 CTTCAAAAGCCCACACAAGTTGGTGGCA
1 CTTCAAAAGCCCACACAAGTCGGTGGCA
814483 TATTCCTTTA
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
64 54 0.66
65 28 0.34
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (65 bp):
CTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTTTCAAAGCCCACACAAGTCGGTGACAACCTT
Found at i:814543 original size:43 final size:43
Alignment explanation
Indices: 814487--814853 Score: 394
Period size: 43 Copynumber: 8.1 Consensus size: 43
814477 GTGGCATATT
*
814487 CCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
* * *
814530 CCTTTAAGTCCAATATCGCTGGCCTGGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
*
814573 CCTTTGTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
** * *
814622 CCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
814665 CCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
** * * *
814714 CCTCCAAG-CCTAATATCGTTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCC-AATATAGCTGGCCTTGAATCAGCACATTGGCA
* *
814757 TCTTCATCTTTAAGTCCAATGTAGATGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
* *
814806 CCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
814849 CCTTT
1 CCTTT
814854 TCCATCTTTA
Statistics
Matches: 272, Mismatches: 32, Indels: 40
0.79 0.09 0.12
Matches are distributed among these distances:
42 2 0.01
43 153 0.56
44 1 0.00
45 2 0.01
47 2 0.01
48 1 0.00
49 109 0.40
50 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
Found at i:814645 original size:92 final size:92
Alignment explanation
Indices: 814488--814897 Score: 651
Period size: 92 Copynumber: 4.4 Consensus size: 92
814478 TGGCATATTC
**
814488 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGC
* **
814553 CTGGAATCAGCATATTGGCACCTTTGT
66 CTTGAATCAGCATATTGGCACCTTCAT
814580 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGC
814645 CTTGAATCAGCATATTGGCACCTTCAT
66 CTTGAATCAGCATATTGGCACCTTCAT
* *
814672 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCCAAG-CCTAATATCGTTGG
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCC-AATATCGCTGG
*
814736 CCTTGAATCAGCATATTGGCATCTTCAT
65 CCTTGAATCAGCATATTGGCACCTTCAT
* ** **
814764 CTTTAAGTCCAATGTAGATGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAACTGGC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGC
814829 CTTGAATCAGCATATTGGCACCTTTTCCAT
66 CTTGAATCAGCATATTGGCACC--TT-CAT
*
814859 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
814898 ACATCCTTTT
Statistics
Matches: 295, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
91 2 0.01
92 249 0.84
93 2 0.01
94 2 0.01
95 40 0.14
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (92 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGC
CTTGAATCAGCATATTGGCACCTTCAT
Found at i:814885 original size:52 final size:55
Alignment explanation
Indices: 814807--814929 Score: 162
Period size: 52 Copynumber: 2.3 Consensus size: 55
814797 ACATTGGCAC
* *
814807 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
814859 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTTCTCAT
1 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCACATTGACATCC-TTTTTCTCAT
*
814915 CTTTAAGCCCAATAT
1 CTTTAAGTCCAATAT
814930 TGTTAGTCGT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
52 37 0.63
53 2 0.03
55 5 0.08
56 15 0.25
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAACTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:815051 original size:49 final size:49
Alignment explanation
Indices: 814976--815466 Score: 498
Period size: 49 Copynumber: 10.2 Consensus size: 49
814966 TTTTTCTCAT
* * *
814976 CTTCATCGTTAAGTCCAATATCGCTGGCCTTGAATCAGCGTATTAGCAC
1 CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
** * *
815025 CTTCATCTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCATATTGTCAC
1 CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
* * * * * *
815074 CTTCTTCTTTAAGTCCAATGTAGCTGGTCTTGAATAAGCACATTGGCA-
1 CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
815122 ---C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
* * * * * * *
815166 CATCATCTTTAAGTCTAATGTAGCCGACCTTGAATCAGCACATTGGCA-
1 CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
*
815214 ATTC--C---AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
* * * *
815258 CCTCATCTTTTAAG-CACAATGTCGCTGGCCTTGAATCAACACATTGGCA-
1 CTTCATC-TTTAAGTC-CAATATCGCTGGCCTTGAATCAGCATATTGGCAC
*
815307 ---C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGC
1 CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
* *
815351 CTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCGTC
1 C--T-TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-AC
* * *
815404 TTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 -CT-TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
815455 CTTCATCTTTAA
1 CTTCATCTTTAA
815467 CATTCCTAAG
Statistics
Matches: 367, Mismatches: 49, Indels: 52
0.78 0.10 0.11
Matches are distributed among these distances:
43 104 0.28
44 4 0.01
45 1 0.00
46 3 0.01
47 1 0.00
48 2 0.01
49 131 0.36
50 35 0.10
51 1 0.00
52 84 0.23
53 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (49 bp):
CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
Found at i:815143 original size:43 final size:43
Alignment explanation
Indices: 815080--815457 Score: 256
Period size: 43 Copynumber: 8.1 Consensus size: 43
815070 TCACCTTCTT
* * * *
815080 CTTTAAGTCCAATGTAGCTGGTCTTGAATAAGCACATTGGCAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
*
815123 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGG---CA-C
* * * * *
815170 ATCTTTAAGTCTAATGTAGCCGACCTTGAATCAGCACATTGGCA-
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
* * *
815214 ATTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTC
1 CTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA----C
* *
815262 ATCTTTTAAG-CACAATGTCGCTGGCCTTGAATCAACACATTGGCAC
1 --C-TTTAAGTC-CAATATCGCTGGCCTTGAATCAGCACATTGGCAC
* *
815308 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATT---G-----G-CAC
* * *
815360 CTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCGTCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATT---G-----G-CAC
*
815412 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
815455 CTT
1 CTT
815458 CATCTTTAAC
Statistics
Matches: 275, Mismatches: 34, Indels: 52
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.01
43 104 0.38
44 3 0.01
46 6 0.02
47 1 0.00
49 36 0.13
50 33 0.12
51 3 0.01
52 87 0.32
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (43 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:815156 original size:92 final size:92
Alignment explanation
Indices: 815031--815466 Score: 491
Period size: 92 Copynumber: 4.6 Consensus size: 92
815021 GCACCTTCAT
** * * *
815031 CTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCATATTGTCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
815096 GCTGGTCTTGAATAAGCACATTGGCAC
66 GCTGGCCTTGAATAAGCACATTGGCAC
* *
815123 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
* * *
815188 GCCGACCTTGAATCAGCACATTGGCA-
66 GCTGGCCTTGAATAAGCACATTGGCAC
* * *
815214 ATTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTCATCTTTTAAG-CACAAT
1 CTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-TTTAAGTC-CAAT
*
815278 GTCGCTGGCCTTGAATCAA-CACATTGGCAC
63 GTAGCTGGCCTTGAAT-AAGCACATTGGCAC
*
815308 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTTTAAGTCCAAT
* * * * * *
815373 ATCGCTGGCCTTAAATCAGCATATTGGCGTCTTTGTCAT
63 GTAGCTGGCCTTGAATAAGCACATT---G-----G-CAC
* *
815412 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAA
815467 CATTCCTAAG
Statistics
Matches: 294, Mismatches: 31, Indels: 29
0.83 0.09 0.08
Matches are distributed among these distances:
91 2 0.01
92 126 0.43
93 71 0.24
94 4 0.01
95 29 0.10
96 6 0.02
98 1 0.00
101 10 0.03
102 1 0.00
103 1 0.00
104 43 0.15
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATAAGCACATTGGCAC
Found at i:815390 original size:52 final size:52
Alignment explanation
Indices: 815308--815457 Score: 255
Period size: 52 Copynumber: 2.9 Consensus size: 52
815298 ACATTGGCAC
815308 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* *
815360 CTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCGTCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * *
815412 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
815458 CATCTTTAAC
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 91 1.00
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
Found at i:816338 original size:13 final size:13
Alignment explanation
Indices: 816320--816409 Score: 63
Period size: 13 Copynumber: 5.9 Consensus size: 13
816310 CATAAAGTGT
816320 TGTATCGATACAA
1 TGTATCGATACAA
816333 TGTATCGATACATAAA
1 TGTATCGATAC---AA
816349 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
816366 TGTATCGATACATAAGTA
1 TGTATCGATAC---A--A
816384 TTGTATCGATACAA
1 -TGTATCGATACAA
816398 TGTATCGATACA
1 TGTATCGATACA
816410 TAAGTTTTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 26
0.71 0.00 0.29
Matches are distributed among these distances:
13 34 0.53
14 1 0.02
16 4 0.06
17 2 0.03
18 1 0.02
19 11 0.17
20 11 0.17
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:816358 original size:20 final size:20
Alignment explanation
Indices: 816299--816364 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
816289 TTTCAATGAT
*
816299 TTGTATTGATACATAAAGTG
1 TTGTATCGATACATAAAGTG
816319 TTGTATCGATAC---AA---
1 TTGTATCGATACATAAAGTG
816333 -TGTATCGATACATAAAGTG
1 TTGTATCGATACATAAAGTG
816352 TTGTATCGATACA
1 TTGTATCGATACA
816365 ATGTATCGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
13 11 0.29
16 2 0.05
17 2 0.05
20 23 0.61
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (20 bp):
TTGTATCGATACATAAAGTG
Found at i:816390 original size:19 final size:19
Alignment explanation
Indices: 816333--816428 Score: 81
Period size: 19 Copynumber: 5.6 Consensus size: 19
816323 ATCGATACAA
*
816333 TGTATCGATACATAAAGTGT
1 TGTATCGATACAT-AAGTAT
816353 TGTATCGATAC---A--A-
1 TGTATCGATACATAAGTAT
816366 TGTATCGATACATAAGTAT
1 TGTATCGATACATAAGTAT
816385 TGTATCGATAC---A--A-
1 TGTATCGATACATAAGTAT
*
816398 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTAT
816417 TGTATCGATACA
1 TGTATCGATACA
816429 ATTTAAGCTA
Statistics
Matches: 62, Mismatches: 2, Indels: 25
0.70 0.02 0.28
Matches are distributed among these distances:
13 22 0.35
14 1 0.02
16 4 0.06
18 1 0.02
19 23 0.37
20 11 0.18
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATAAGTAT
Found at i:816393 original size:32 final size:33
Alignment explanation
Indices: 816300--816430 Score: 221
Period size: 32 Copynumber: 4.0 Consensus size: 33
816290 TTCAATGATT
*
816300 TGTATTGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
816333 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*
816366 TGTATCGATACAT-AAGTATTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*
816398 TGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
816430 T
1 T
816431 TTAAGCTACT
Statistics
Matches: 95, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 50 0.53
33 45 0.47
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:816490 original size:13 final size:13
Alignment explanation
Indices: 816472--816496 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
816462 ATTACTCAAA
816472 TATATCGATACAT
1 TATATCGATACAT
816485 TATATCGATACA
1 TATATCGATACA
816497 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (13 bp):
TATATCGATACAT
Found at i:816510 original size:152 final size:152
Alignment explanation
Indices: 816352--816668 Score: 616
Period size: 152 Copynumber: 2.1 Consensus size: 152
816342 ACATAAAGTG
816352 TTGTATCGATACAATGTATCGATACATAAGTATTGTATCGATACAATGTATCGATACATAAGTTT
1 TTGTATCGATACAATGTATCGATACATAAGTATTGTATCGATACAATGTATCGATACATAAGTTT
816417 TGTATCGATACAATTTAAGCTACTGCCAAAAAAATATATCGATACATTACTCAAATATATCGATA
66 TGTATCGATACAATTTAAGCTACTGCCAAAAAAATATATCGATACATTACTCAAATATATCGATA
816482 CATTATATCGATACACTGATCT
131 CATTATATCGATACACTGATCT
816504 TTGTATCGATACAATGTATCGATACATAAGTATTGTATCGATACAATGTATCGATACATAAGTTT
1 TTGTATCGATACAATGTATCGATACATAAGTATTGTATCGATACAATGTATCGATACATAAGTTT
*
816569 TGTATCGATACAATTTAAGCTACTGCCAAAAAAATTTATCGATACATTACTCAAATATATCGATA
66 TGTATCGATACAATTTAAGCTACTGCCAAAAAAATATATCGATACATTACTCAAATATATCGATA
816634 CATTATATCGATACACTGATCT
131 CATTATATCGATACACTGATCT
*
816656 TTGTATTGATACA
1 TTGTATCGATACA
816669 TGCAAGCAAA
Statistics
Matches: 163, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
152 163 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (152 bp):
TTGTATCGATACAATGTATCGATACATAAGTATTGTATCGATACAATGTATCGATACATAAGTTT
TGTATCGATACAATTTAAGCTACTGCCAAAAAAATATATCGATACATTACTCAAATATATCGATA
CATTATATCGATACACTGATCT
Found at i:816523 original size:13 final size:13
Alignment explanation
Indices: 816505--816561 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
816495 CACTGATCTT
816505 TGTATCGATACAA
1 TGTATCGATACAA
816518 TGTATCGATACATAAGTA
1 TGTATCGATAC---A--A
816536 TTGTATCGATACAA
1 -TGTATCGATACAA
816550 TGTATCGATACA
1 TGTATCGATACA
816562 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
14 1 0.03
16 2 0.05
18 1 0.03
19 11 0.29
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:816542 original size:19 final size:19
Alignment explanation
Indices: 816518--816580 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
816508 ATCGATACAA
816518 TGTATCGATACATAAGTAT
1 TGTATCGATACATAAGTAT
816537 TGTATCGATAC---A--A-
1 TGTATCGATACATAAGTAT
*
816550 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTAT
816569 TGTATCGATACA
1 TGTATCGATACA
816581 ATTTAAGCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
16 2 0.05
19 23 0.62
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATAAGTAT
Found at i:816545 original size:32 final size:32
Alignment explanation
Indices: 816504--816582 Score: 149
Period size: 32 Copynumber: 2.5 Consensus size: 32
816494 ACACTGATCT
816504 TTGTATCGATACAATGTATCGATACATAAGTA
1 TTGTATCGATACAATGTATCGATACATAAGTA
*
816536 TTGTATCGATACAATGTATCGATACATAAGTT
1 TTGTATCGATACAATGTATCGATACATAAGTA
816568 TTGTATCGATACAAT
1 TTGTATCGATACAAT
816583 TTAAGCTACT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (32 bp):
TTGTATCGATACAATGTATCGATACATAAGTA
Found at i:816642 original size:13 final size:13
Alignment explanation
Indices: 816624--816648 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
816614 ATTACTCAAA
816624 TATATCGATACAT
1 TATATCGATACAT
816637 TATATCGATACA
1 TATATCGATACA
816649 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (13 bp):
TATATCGATACAT
Found at i:816697 original size:52 final size:50
Alignment explanation
Indices: 816639--816785 Score: 195
Period size: 52 Copynumber: 2.8 Consensus size: 50
816629 CGATACATTA
* *
816639 TATCGATACACTGATCTTTGTATTGATACATGCAAGCAAATTTGCCCAGATG
1 TATCGATACACT-AT-TATGTATCGATACATGCAAGCAAATTTGCCCAGATG
* *
816691 TATCGATACACTATAAAATGTATCGATACATGCAAGCAAATTTGCCCATATG
1 TATCGATACACTAT--TATGTATCGATACATGCAAGCAAATTTGCCCAGATG
*
816743 TATCGATACACTATTAAATGTATCGATACATGCAGGCAAATTT
1 TATCGATACACTATT--ATGTATCGATACATGCAAGCAAATTT
816786 TCATATTTCG
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (50 bp):
TATCGATACACTATTATGTATCGATACATGCAAGCAAATTTGCCCAGATG
Found at i:818918 original size:24 final size:26
Alignment explanation
Indices: 818891--818944 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
818881 TCAAAAAATT
818891 ATTCAT-C-GGGGACACTCCAACCCC
1 ATTCATCCAGGGGACACTCCAACCCC
*
818915 ATTCTTCCGAGGGGACACTCCAACCCC
1 ATTCATCC-AGGGGACACTCCAACCCC
818942 ATT
1 ATT
818945 TTCAACCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 1 0.04
27 20 0.77
ACGTcount: A:0.24, C:0.39, G:0.17, T:0.20
Consensus pattern (26 bp):
ATTCATCCAGGGGACACTCCAACCCC
Found at i:820128 original size:18 final size:19
Alignment explanation
Indices: 820105--820144 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
820095 TAGTTGTGCT
*
820105 TAAAATATT-TTATATTTA
1 TAAAATATTGTTATATTAA
*
820123 TAAAATTTTGTTATATTAA
1 TAAAATATTGTTATATTAA
820142 TAA
1 TAA
820145 TTTGTGTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
TAAAATATTGTTATATTAA
Found at i:820138 original size:19 final size:19
Alignment explanation
Indices: 820105--820156 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
820095 TAGTTGTGCT
*
820105 TAAAATATT-TTATATTTA
1 TAAAATTTTGTTATATTTA
820123 TAAAATTTTGTTATA-TTA
1 TAAAATTTTGTTATATTTA
*
820141 -ATAATTTGTGTTATAT
1 TAAAATTT-TGTTATAT
820157 AAATTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 6 0.21
18 18 0.62
19 5 0.17
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (19 bp):
TAAAATTTTGTTATATTTA
Found at i:820533 original size:16 final size:18
Alignment explanation
Indices: 820502--820537 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
820492 AATAATTAAA
820502 ATAAATATGATGAAAAAT
1 ATAAATATGATGAAAAAT
820520 ATAAATAT-AT-AAAAAT
1 ATAAATATGATGAAAAAT
820536 AT
1 AT
820538 CAAAATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 2 0.11
18 8 0.44
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
ATAAATATGATGAAAAAT
Found at i:824445 original size:2 final size:2
Alignment explanation
Indices: 824440--824491 Score: 77
Period size: 2 Copynumber: 26.0 Consensus size: 2
824430 GAGAGCACTC
* *
824440 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
824482 AT AT AC AT AT
1 AT AT AT AT AT
824492 TTGAAACTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:828391 original size:19 final size:19
Alignment explanation
Indices: 828367--828406 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
828357 GTAGCGATTG
828367 TATTTGACAAAAGGGGTAA
1 TATTTGACAAAAGGGGTAA
828386 TATTTGACAAAAGGGGTAA
1 TATTTGACAAAAGGGGTAA
828405 TA
1 TA
828407 AAATTATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.28
Consensus pattern (19 bp):
TATTTGACAAAAGGGGTAA
Found at i:833966 original size:152 final size:150
Alignment explanation
Indices: 833716--834149 Score: 470
Period size: 152 Copynumber: 2.8 Consensus size: 150
833706 TTACCGGGAT
* * * *
833716 ACTTTCATGTCGAAGGTATACCCATAGGGGTATTTTCATAATTTTTTAGAA-CTGAGTCATAGGT
1 ACTTTCAAGTCAAAGGTAT-CCCCTAGGGGTATTTTCATAATTTTTTAAAATC-GAGTCATAGGT
* * * * *
833780 TGTCACTGGGCCTGCTTTTATGCCGAAGGATATTTAGGATAGATTCATCCCTTCTATAATCTTTT
64 TGTCACCGGG-TTCCTTTTATGCCGAAGGGTATTTAGGATAGGTTCATCCCTTCTATAATCTTTT
833845 TAAGTCCTTTAG-GGGTATCAAGC
128 TAAGTCCTTT-GTGGGTATCAAGC
* ** * *
833868 AC-TTCTAAGTCGAAGGTATCTCGTTAGGGGTATTTTCATAATTTTTTAAAATCAAGTCTTAGGT
1 ACTTTC-AAGTCAAAGGTATC-CCCTAGGGGTATTTTCATAATTTTTTAAAATCGAGTCATAGGT
* * *
833932 TATCACCGAGTTCCTTTTAT-CCGAAGTTGGTATTTAGGATAGGTTCATCCCATTTTA-AATCTT
64 TGTCACCGGGTTCCTTTTATGCCGAAG--GGTATTTAGGATAGGTTCATCCC-TTCTATAATC-T
*
833995 TTTTAAGTCCTTTGTGGGTATCAGGC
125 TTTTAAGTCCTTTGTGGGTATCAAGC
* * * *
834021 ACTTTCACGTCAAAGGTATCCCCTA-GGGT-TTTTTAGT-ATTTTTTCAAAATCGAGTCCTAAGT
1 ACTTTCAAGTCAAAGGTATCCCCTAGGGGTATTTTCA-TAATTTTTT-AAAATCGAGTCATAGGT
*
834083 TGTCACCGGGTTCGCTTTTTATGCCGAAGGGGTATTTAGGATAGGTTCATCCATTCTATAATCTT
64 TGTCACCGGGTTC-C-TTTTATGCCGAA-GGGTATTTAGGATAGGTTCATCCCTTCTATAATCTT
834148 TT
126 TT
834150 CCCAATCGTC
Statistics
Matches: 239, Mismatches: 27, Indels: 32
0.80 0.09 0.11
Matches are distributed among these distances:
150 18 0.08
151 42 0.18
152 95 0.40
153 75 0.31
154 8 0.03
155 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (150 bp):
ACTTTCAAGTCAAAGGTATCCCCTAGGGGTATTTTCATAATTTTTTAAAATCGAGTCATAGGTTG
TCACCGGGTTCCTTTTATGCCGAAGGGTATTTAGGATAGGTTCATCCCTTCTATAATCTTTTTAA
GTCCTTTGTGGGTATCAAGC
Found at i:866827 original size:154 final size:153
Alignment explanation
Indices: 866584--867022 Score: 493
Period size: 154 Copynumber: 2.8 Consensus size: 153
866574 GACGATTGGG
866584 AAAAGATTATAGAAT-GGATGAACCTATCCTAAATACCCCTTCGGCATAAAAGCGAACCCGGTGA
1 AAAAGATTATAGAATGGGATGAACCTATCCTAAATACCCCTTCGGCATAAAAGCGAACCCGGTGA
* * ** *
866648 CAACTTAGGACTCGATTTTGAAAAAATTACT-AAAATAACCCTAGGGGATACCTTTGACGTGA-A
66 CAACCTAAGACTCGATTTT-AAAAAATTA-TGAAAATAACCCTAACGGATACCTTCGAC-TGAGA
866711 AGTGCCTGATACCCAC-AAAGGACTTAA
128 AGTGCCTGATACCC-CTAAAGGACTT-A
* * *
866738 AAAAGATT-TAAAATGGGATGAACCTATCCTAAATACCCAACTTCGGCATAAAAGGGAACTCGGT
1 AAAAGATTATAGAATGGGATGAACCTATCCTAAATACCC--CTTCGGCATAAAAGCGAACCCGGT
* * * *
866802 GATAACCTAAGACTTGATTTTAAAAAATTATGAAAATACCCCTAACGGATACCTTCGACTTAGAA
64 GACAACCTAAGACTCGATTTTAAAAAATTATGAAAATAACCCTAACGGATACCTTCGACTGAGAA
*
866867 GTGCTTGATACCCCTAAAGGACTTA
129 GTGCCTGATACCCCTAAAGGACTTA
* * * *
866892 AAAAGATTATAGAA-GGGATGAATCTATCCTAAATA-TCCTTCGGCATAAAAGC-AGGCCCAGTG
1 AAAAGATTATAGAATGGGATGAACCTATCCTAAATACCCCTTCGGCATAAAAGCGA-ACCCGGTG
* * * **
866954 ACAACCTATGACTC-AGTTCTAAAAAAAATTATGAAAATACCCCTATGGGTATACCTTCGACATG
65 ACAACCTAAGACTCGA-TT-T-TAAAAAATTATGAAAATAACCCTAACGG-ATACCTTCGAC-TG
867018 A-AAGT
125 AGAAGT
867023 ATCCCGGTAA
Statistics
Matches: 245, Mismatches: 27, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
150 2 0.01
151 32 0.13
152 1 0.00
153 31 0.13
154 79 0.32
155 61 0.25
156 39 0.16
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (153 bp):
AAAAGATTATAGAATGGGATGAACCTATCCTAAATACCCCTTCGGCATAAAAGCGAACCCGGTGA
CAACCTAAGACTCGATTTTAAAAAATTATGAAAATAACCCTAACGGATACCTTCGACTGAGAAGT
GCCTGATACCCCTAAAGGACTTA
Found at i:869025 original size:164 final size:164
Alignment explanation
Indices: 868866--869427 Score: 394
Period size: 165 Copynumber: 3.4 Consensus size: 164
868856 AAAATCCCCT
* * * * * **
868866 CAAAAATATTTATGGAGTAGAAAACTCCATTTTTC-AAAA-ATGGAGAAATTTC-GAAAAAATTT
1 CAAAAATATTTACGGAGCAAAAAACTCCATATTTCGAAAATAT-GAG-AATTTCAAAAAAAATGA
* *
868928 AAAACTCATGAAAATAAATTAATTTTTTTAAAACCGATTTAATATAAATTAAATAATAATATTTG
64 AAAACTCATGAAAATAAATGAA-TTTTTGAAAACCGATTTAATATAAATTAAATAATAATATTTG
*
868993 ATTTATTTTAAAAATTTAAAACCAACAAAAATCATTC
128 ATTTATTTTAAAAATTTAAAACCAACAAAAATCACTC
* ** *
869030 CAAAAATATTTACGGAGCAAAAAATTCTGTATTTCGAAAATATGAGAGTTTCAAAAAAAATGAAA
1 CAAAAATATTTACGGAGCAAAAAACTCCATATTTCGAAAATATGAGAATTTCAAAAAAAATGAAA
* * * *
869095 AACTCATGAAGATGAGTGAATTTTTGAAAACTGATTTAATATAAATTAAATAATAATATTTGA-T
66 AACTCATGAAAATAAATGAATTTTTGAAAACCGATTTAATATAAATTAAATAATAATATTTGATT
* * ** * **
869159 GAATTTGGAAATTTATAAACTAGTAAAAATC-CTC
131 TATTTTAAAAATTTA-AAACCAACAAAAATCACTC
* * * * * * *
869193 TCGAAAAA-ATTTACAGAG-AAGAAAACTTCATATTTTGGAAACAAGAGGAATTCCAAAAGAAAA
1 -C-AAAAATATTTACGGAGCAA-AAAACTCCATATTTCGAAAATATGA-GAATTTCAAAA-AAAA
* * * * ** * ** *
869256 TCAATAACTCAT-AAAATAAAAAGAATTTTTCAAAATTGATCTAA-AGT-TGTTAAATGATAATA
61 TGAAAAACTCATGAAAAT-AAATGAATTTTTGAAAACCGATTTAATA-TAAATTAAATAATAATA
** ** * **
869318 TTTGATAAATTTTAAGAAATTT-AAGTCGATGAAAATC-CTTC
124 TTTGATTTATTTTAA-AAATTTAAAACCAACAAAAATCAC-TC
* * * * * *
869359 CAAAAAAATTTACGGAG-AAGAAAACTTCGTATTTCGAAAATAAGAGGAATTCCAAGGAAAAATG
1 CAAAAATATTTACGGAGCAA-AAAACTCCATATTTCGAAAATATGA-GAATTTCAA-AAAAAATG
869423 AAAAA
63 AAAAA
869428 TGAATGAATT
Statistics
Matches: 315, Mismatches: 67, Indels: 31
0.76 0.16 0.08
Matches are distributed among these distances:
163 16 0.05
164 118 0.37
165 131 0.42
166 44 0.14
167 6 0.02
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (164 bp):
CAAAAATATTTACGGAGCAAAAAACTCCATATTTCGAAAATATGAGAATTTCAAAAAAAATGAAA
AACTCATGAAAATAAATGAATTTTTGAAAACCGATTTAATATAAATTAAATAATAATATTTGATT
TATTTTAAAAATTTAAAACCAACAAAAATCACTC
Found at i:870586 original size:86 final size:85
Alignment explanation
Indices: 870494--870855 Score: 306
Period size: 86 Copynumber: 4.2 Consensus size: 85
870484 GGGTAAACTA
* * * * *
870494 ACAAGTCAACAAAGGATAAAGAGGATTTACTTGGGACTATGCCGATAGGTAAACACAAAACAAAA
1 ACAAGTCAACAAAGGATAAAGAGGATTTACTTGGGACTAAGTCGACAGGTAAACATAAAATAAAA
870559 AGGTTGACCAGGCATAAACCG
66 AGGTTGACC-GGCATAAACCG
** * * * ** *
870580 ACAAGTCAATGAAGGATAAAGAGGATTCACCTT-GGACTAAGGCGATAGGTAAACATAGGAT-GA
1 ACAAGTCAACAAAGGATAAAGAGGATTTA-CTTGGGACTAAGTCGACAGGTAAACATAAAATAAA
*
870643 AAGAGTTGACCAGGCATGAACCG
65 AAG-GTTGACC-GGCATAAACCG
* * * * * *
870666 ATAAGTCAATGAAA-AATAAAGAGGATTTATTTGGGACTGAGTCGACAAGTAAA-A-AAAGGATA
1 ACAAGTCAA-CAAAGGATAAAGAGGATTTACTTGGGACTAAGTCGACAGGTAAACATAAA--ATA
* *
870728 AAAAGGTTGACCGGGATTAATCCG
63 AAAAGGTTGACCGGCA-TAAACCG
* * * * ** *
870752 ACAAGTTAACAAAGGATAAA-AAGATTTAC-TAGGACTAAGTTGACAGGTAAACATAGGATATAA
1 ACAAGTCAACAAAGGATAAAGAGGATTTACTTGGGACTAAGTCGACAGGTAAACATAAAATAAAA
* *
870815 AGGTTGACCGAGTATGAACCG
66 AGGTTGACCG-GCATAAACCG
*
870836 ACAAGCCAACAAAGGATAAA
1 ACAAGTCAACAAAGGATAAA
870856 AAGTGATACC
Statistics
Matches: 219, Mismatches: 45, Indels: 26
0.76 0.16 0.09
Matches are distributed among these distances:
84 57 0.26
85 23 0.11
86 130 0.59
87 9 0.04
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.19
Consensus pattern (85 bp):
ACAAGTCAACAAAGGATAAAGAGGATTTACTTGGGACTAAGTCGACAGGTAAACATAAAATAAAA
AGGTTGACCGGCATAAACCG
Found at i:870754 original size:42 final size:42
Alignment explanation
Indices: 870708--870858 Score: 135
Period size: 42 Copynumber: 3.6 Consensus size: 42
870698 GGGACTGAGT
*
870708 CGACAAGTAAAAAAAGGATAAAAAGGTTGACCGGGATTAATC
1 CGACAAGTAAACAAAGGATAAAAAGGTTGACCGGGATTAATC
* * * ** *
870750 CGACAAGTTAACAAAGGATAAAAAGATTTACTAGGACTAAGT-
1 CGACAAGTAAACAAAGGATAAAAAGGTTGACCGGGATTAA-TC
* * * * * *
870792 TGACAGGTAAACATAGGATATAAAGGTTGACCGAGTATGAA-C
1 CGACAAGTAAACAAAGGATAAAAAGGTTGACCG-GGATTAATC
**
870834 CGACAAGCCAACAAAGGATAAAAAG
1 CGACAAGTAAACAAAGGATAAAAAG
870859 TGATACCTGA
Statistics
Matches: 81, Mismatches: 25, Indels: 6
0.72 0.22 0.05
Matches are distributed among these distances:
42 76 0.94
43 5 0.06
ACGTcount: A:0.47, C:0.13, G:0.23, T:0.17
Consensus pattern (42 bp):
CGACAAGTAAACAAAGGATAAAAAGGTTGACCGGGATTAATC
Found at i:870817 original size:84 final size:84
Alignment explanation
Indices: 870444--870858 Score: 227
Period size: 86 Copynumber: 4.9 Consensus size: 84
870434 AGTTATTCGA
* * * ** * * ** *
870444 GACTAAGCCGACAAGTAAACAAAGGATATAAA-GTTGGTCG-GGGTAAACTAACAAGTCAACAAA
1 GACTAAGTCGACAAGTAAAAAAAGGATAAAAAGGTTGACCGAGGATGAACCGACAAGCCAACAAA
* *
870507 GGATAAAGAGGATTTACTTGG
66 GGATAAA-AAGATTTAC-TAG
* * * * * * * *
870528 GACTATGCCGATAGGTAAACACAAA--ACAAAAAGGTTGACC-AGGCATAAACCGACAAGTCAAT
1 GACTAAGTCGACAAGTAAA-A-AAAGGATAAAAAGGTTGACCGAGG-ATGAACCGACAAGCCAAC
* * * *
870590 GAAGGATAAAGAGGATTCACCTTG
63 AAAGGATAAA-AAGATTTA-CTAG
* * * * * * * * *
870614 GACTAAGGCGATAGGTAAACATAGGAT-GAAAGAGTTGACC-AGGCATGAACCGATAAGTCAATG
1 GACTAAGTCGACAAGTAAAAAAAGGATAAAAAG-GTTGACCGAGG-ATGAACCGACAAGCCAA-C
* * * *
870677 AAA-AATAAAGAGGATTTATTTGG
63 AAAGGATAAA-AAGATTTA-CTAG
* * **
870700 GACTGAGTCGACAAGTAAAAAAAGGATAAAAAGGTTGACCG-GGATTAATCCGACAAGTTAACAA
1 GACTAAGTCGACAAGTAAAAAAAGGATAAAAAGGTTGACCGAGGATGAA-CCGACAAGCCAACAA
870764 AGGATAAAAAGATTTACTAG
65 AGGATAAAAAGATTTACTAG
* * * * * *
870784 GACTAAGTTGACAGGTAAACATAGGATATAAAGGTTGACCGAGTATGAACCGACAAGCCAACAAA
1 GACTAAGTCGACAAGTAAAAAAAGGATAAAAAGGTTGACCGAGGATGAACCGACAAGCCAACAAA
870849 GGATAAAAAG
66 GGATAAAAAG
870859 TGATACCTGA
Statistics
Matches: 261, Mismatches: 55, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
84 84 0.32
85 30 0.11
86 140 0.54
87 7 0.03
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.18
Consensus pattern (84 bp):
GACTAAGTCGACAAGTAAAAAAAGGATAAAAAGGTTGACCGAGGATGAACCGACAAGCCAACAAA
GGATAAAAAGATTTACTAG
Found at i:870975 original size:46 final size:46
Alignment explanation
Indices: 870923--871305 Score: 307
Period size: 47 Copynumber: 8.3 Consensus size: 46
870913 CGAGCAAAGA
*
870923 TGAAAAGAGTTTGACCAGGACTAACGCCAATACAGTTAAACGATGG
1 TGAAAAGAGTTTGACCAGGACTAACGCCAATACAGTTAAACGAAGG
* * * * * * *
870969 TGAAAAGAGTTTGACTAGAACTAACACCCATATAGTTAAATGAGGG
1 TGAAAAGAGTTTGACCAGGACTAACGCCAATACAGTTAAACGAAGG
* *
871015 T-AAGAAGAGTTTGACCAGGACTAACGCCAATACAGTCAAATGAAGG
1 TGAA-AAGAGTTTGACCAGGACTAACGCCAATACAGTTAAACGAAGG
* ** * *
871061 T-AAGAAGAGTTTCACCAGGTTTTAATGCCAATACAGTTAAACG-GGG
1 TGAA-AAGAGTTTGACCAGG-ACTAACGCCAATACAGTTAAACGAAGG
* ** *
871107 AT-AGAAAGAGTTTGATCAAGTCCTAACGCCAATACAGTTAAACGAGGG
1 -TGA-AAAGAGTTTGA-CCAGGACTAACGCCAATACAGTTAAACGAAGG
* * * * * *
871155 TGGAAAGAGTTTGACTAGGTCCTAATGCCAATAGAGTCAAACGAAGG
1 TGAAAAGAGTTTGACCAGG-ACTAACGCCAATACAGTTAAACGAAGG
** * * *
871202 TGAGAAA-AGTTTGACCAAGTCCTAA---C-TTAGAGTCAAACGAAGG
1 TGA-AAAGAGTTTGACC-AGGACTAACGCCAATACAGTTAAACGAAGG
* * *
871245 TGAAAAGAGTTTGACCAGGTGCTAATGCCAATACAATTAAACGAAGG
1 TGAAAAGAGTTTGACCAGG-ACTAACGCCAATACAGTTAAACGAAGG
*
871292 TGAAAAAAGTTTGA
1 TGAAAAGAGTTTGA
871306 AAGAGATGAT
Statistics
Matches: 276, Mismatches: 45, Indels: 31
0.78 0.13 0.09
Matches are distributed among these distances:
42 5 0.02
43 32 0.12
44 1 0.00
45 2 0.01
46 99 0.36
47 125 0.45
48 12 0.04
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGAAAAGAGTTTGACCAGGACTAACGCCAATACAGTTAAACGAAGG
Found at i:871324 original size:90 final size:88
Alignment explanation
Indices: 871137--871305 Score: 212
Period size: 90 Copynumber: 1.9 Consensus size: 88
871127 TCCTAACGCC
* * * * * * *
871137 AATACAGTTAAACGAGGGTGGAAAGAGTTTGACTAGGTCCTAATGCCAATAGAGTCAAACGAAGG
1 AATAGAGTCAAACGAAGGTGAAAAGAGTTTGACCAGGTCCTAATGCCAATACAATCAAACGAAGG
* * *
871202 TGAGAAAAGTTTGACCAAGTCCT
66 TGAAAAAAGTTTGACAAAGTCAT
* *
871225 AACTTAGAGTCAAACGAAGGTGAAAAGAGTTTGACCAGGTGCTAATGCCAATACAATTAAACGAA
1 AA--TAGAGTCAAACGAAGGTGAAAAGAGTTTGACCAGGTCCTAATGCCAATACAATCAAACGAA
871290 GGTGAAAAAAGTTTGA
64 GGTGAAAAAAGTTTGA
871306 AAGAGATGAT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
88 2 0.03
90 67 0.97
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (88 bp):
AATAGAGTCAAACGAAGGTGAAAAGAGTTTGACCAGGTCCTAATGCCAATACAATCAAACGAAGG
TGAAAAAAGTTTGACAAAGTCAT
Found at i:871364 original size:36 final size:36
Alignment explanation
Indices: 871322--871411 Score: 112
Period size: 36 Copynumber: 2.5 Consensus size: 36
871312 TGATGGAAAG
*
871322 AGTTTGACTAATTACAGTCAAATGATGGCAGAAA-AA
1 AGTTTGACCAA-TACAGTCAAATGATGGCAGAAAGAA
* *
871358 AGTTTGACCAGATATAGTCAAATGATGGTAGAAAGAA
1 AGTTTGACCA-ATACAGTCAAATGATGGCAGAAAGAA
871395 A-TTTGACCAAATACAGT
1 AGTTTGACC-AATACAGT
871412 AAACAATGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
36 42 0.89
37 5 0.11
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.26
Consensus pattern (36 bp):
AGTTTGACCAATACAGTCAAATGATGGCAGAAAGAA
Found at i:871494 original size:35 final size:35
Alignment explanation
Indices: 871455--871595 Score: 126
Period size: 35 Copynumber: 4.1 Consensus size: 35
871445 TTCTTTGATC
*
871455 AGATATAATCAAACAATGGTGGAAAGAGTTTGACT
1 AGATACAATCAAACAATGGTGGAAAGAGTTTGACT
* *
871490 AGATACAATCAAACGATGGTGGAAAGAGTTTGACC
1 AGATACAATCAAACAATGGTGGAAAGAGTTTGACT
* * * ** *
871525 AGGTA-AAGT-TAACGA-GGATAAAAAGAGTTTGACC
1 AGATACAA-TCAAACAATGG-TGGAAAGAGTTTGACT
* ** *
871559 AGATACAGTCAAATGATGATGGAAAGAGTTTGACT
1 AGATACAATCAAACAATGGTGGAAAGAGTTTGACT
871594 AG
1 AG
871596 GGCGAAACTA
Statistics
Matches: 86, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
33 2 0.02
34 26 0.30
35 57 0.66
36 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.26, T:0.23
Consensus pattern (35 bp):
AGATACAATCAAACAATGGTGGAAAGAGTTTGACT
Found at i:871509 original size:88 final size:87
Alignment explanation
Indices: 871360--871526 Score: 219
Period size: 88 Copynumber: 1.9 Consensus size: 87
871350 CAGAAAAAAG
* ** *
871360 TTTGACCAGATATAGTCAAATGATGGTAGAAAGAAATTTGACCAAATACAGTAAACAATGGTGGA
1 TTTGACCAGATATAATCAAACAATGGTAGAAAGAAATTTGACCAAATACAATAAACAATGGTGGA
871425 AAGAGGTTTGACCAGATACATTC
66 AAGA-GTTTGACCAGATACATTC
* * * * * *
871448 TTTGATCAGATATAATCAAACAATGGTGGAAAG-AGTTTGACTAGATACAATCAAACGATGGTGG
1 TTTGACCAGATATAATCAAACAATGGTAGAAAGAAATTTGACCAAATACAAT-AAACAATGGTGG
871512 AAAGAGTTTGACCAG
65 AAAGAGTTTGACCAG
871527 GTAAAGTTAA
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
87 24 0.35
88 44 0.65
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (87 bp):
TTTGACCAGATATAATCAAACAATGGTAGAAAGAAATTTGACCAAATACAATAAACAATGGTGGA
AAGAGTTTGACCAGATACATTC
Found at i:871806 original size:35 final size:36
Alignment explanation
Indices: 871688--871815 Score: 143
Period size: 36 Copynumber: 3.6 Consensus size: 36
871678 ATAAATGATG
* *
871688 GAAAG-AGTTTGACTAATTACAGTCAAACGATGGTA
1 GAAAGAAGTTTGACCAAATACAGTCAAACGATGGTA
* * * * *
871723 GAAAAAAGTTTGACCAGATATAGTCAAATGAAGGTA
1 GAAAGAAGTTTGACCAAATACAGTCAAACGATGGTA
* *
871759 GAAAGAAATTTGACCAAATACAGT-AAACGATGGTG
1 GAAAGAAGTTTGACCAAATACAGTCAAACGATGGTA
* *
871794 GAAAGAGGTTTGACCAGATACA
1 GAAAGAAGTTTGACCAAATACA
871816 TTTTTTGACC
Statistics
Matches: 75, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
35 31 0.41
36 44 0.59
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.22
Consensus pattern (36 bp):
GAAAGAAGTTTGACCAAATACAGTCAAACGATGGTA
Found at i:871857 original size:52 final size:52
Alignment explanation
Indices: 871783--871919 Score: 202
Period size: 52 Copynumber: 2.6 Consensus size: 52
871773 CAAATACAGT
* * *
871783 AAACGATGGTGGAAAGAGGTTTGACCAGATACATTTTTTGACCAGATATAATC
1 AAACAATGGTGGAAAGA-GTTTGACTAGATACATTCTTTGACCAGATATAATC
* *
871836 AAACAATGGTGGAAAGAGTTTGGCTAGATACATTCTTTGACCAGATATAGTC
1 AAACAATGGTGGAAAGAGTTTGACTAGATACATTCTTTGACCAGATATAATC
* *
871888 AAATAATGGTGAAAAGAGTTTGACTAGATACA
1 AAACAATGGTGGAAAGAGTTTGACTAGATACA
871920 ATCAAACGAT
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
52 60 0.79
53 16 0.21
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.28
Consensus pattern (52 bp):
AAACAATGGTGGAAAGAGTTTGACTAGATACATTCTTTGACCAGATATAATC
Found at i:871917 original size:35 final size:35
Alignment explanation
Indices: 871871--872015 Score: 157
Period size: 35 Copynumber: 4.2 Consensus size: 35
871861 AGATACATTC
* **
871871 TTTGACCAGATATAGTCAAATAATGGTGAAAAGAG
1 TTTGACCAGATACAGTCAAACGATGGTGAAAAGAG
* * *
871906 TTTGACTAGATACAATCAAACGATGGTGGAAAGAG
1 TTTGACCAGATACAGTCAAACGATGGTGAAAAGAG
* * * * *
871941 TTTGACCAGGTAAAGT-TAACGAGGGTAAAAAGAG
1 TTTGACCAGATACAGTCAAACGATGGTGAAAAGAG
* * *
871975 TTTGACCAGATACAGTCAAATGATGATGGAAAGAG
1 TTTGACCAGATACAGTCAAACGATGGTGAAAAGAG
872010 TTTGAC
1 TTTGAC
872016 TAGGGCGAAA
Statistics
Matches: 87, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
34 28 0.32
35 59 0.68
ACGTcount: A:0.40, C:0.10, G:0.26, T:0.24
Consensus pattern (35 bp):
TTTGACCAGATACAGTCAAACGATGGTGAAAAGAG
Found at i:872253 original size:81 final size:81
Alignment explanation
Indices: 872028--872582 Score: 541
Period size: 81 Copynumber: 6.9 Consensus size: 81
872018 GGGCGAAACT
* * *
872028 GATAGAGTCAACCAATTAAAAGGTTGG-C--GGTGAAA-TCGATAAAGCCAACATGTTAGAGGGG
1 GATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCGAAACT-GATAAAGCCAACAGGTTAGAGGGG
* * *
872089 TTGACTAGGATAAAACC
65 TTGACCAGGATGAAATC
* * *
872106 GATAGAGTCAACTAATTGAAAGGTTGG-CAAGGCGAAACTGATAAAGCCAACAAGTTAGAGGGGT
1 GATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCGAAACTGATAAAGCCAACAGGTTAGAGGGGT
* * * *
872170 TGACCATGTTGACATT
66 TGACCAGGATGAAATC
* * * * ** *
872186 GTTTGAGTCAACCAATTGAAAAGTTGGCCAGGGCAAAACCAATAAAGCCAACAGGTTAGAGAGGT
1 GATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCGAAACTGATAAAGCCAACAGGTTAGAGGGGT
*
872251 TGACCAAGATGAAATC
66 TGACCAGGATGAAATC
* * * *
872267 GATAGAGTCAATCAATTGAAAGGTTGGCCAGGGCGAAACTGATAAAGCCAGCAAGCTAGAGGGGT
1 GATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCGAAACTGATAAAGCCAACAGGTTAGAGGGGT
* *
872332 TGACTAGGACGAAA-C
66 TGACCAGGATGAAATC
* * ** * *
872347 TAATAGAATCAATGAATTGAAAGGTTGGCCAGGGC-ATAACCGATAAAGCCAATAGGTTAGAGGG
1 -GATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCGA-AACTGATAAAGCCAACAGGTTAGAGGG
** *
872411 GTTGATTAGGGTGAAATC
64 GTTGACCAGGATGAAATC
* ** * *
872429 GATTGAGTCAACCAATTGAAAGGTTGGTTAGGGCGAAACTGATAAAGCCAACGGGTTAGAAGGGT
1 GATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCGAAACTGATAAAGCCAACAGGTTAGAGGGGT
* *
872494 TGACCAAGATGAAACC
66 TGACCAGGATGAAATC
* * * * * * * * * *
872510 GATAGAGTCAGCTAGTTAAAAGGTTAGCTAGGG-AAAAATCGATAAAGCTAACAGGTTAGAGGCG
1 GATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCGAAACT-GATAAAGCCAACAGGTTAGAGGGG
872574 TTGACCAGG
65 TTGACCAGG
872583 GCGAAACTAA
Statistics
Matches: 388, Mismatches: 80, Indels: 15
0.80 0.17 0.03
Matches are distributed among these distances:
78 26 0.07
80 68 0.18
81 292 0.75
82 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.28, T:0.20
Consensus pattern (81 bp):
GATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCGAAACTGATAAAGCCAACAGGTTAGAGGGGT
TGACCAGGATGAAATC
Found at i:872382 original size:162 final size:160
Alignment explanation
Indices: 872011--872578 Score: 604
Period size: 162 Copynumber: 3.5 Consensus size: 160
872001 TGGAAAGAGT
* * *
872011 TTGACTAGGGCGAAACTGATAGAGTCAACCAATTAAAAGGTTGG-C-GGTG--AAATCGATAAAG
1 TTGACTAGGACGAAACTGATAGAGTCAACCAATTGAAAGGTTGGCCAGG-GCAAAACCGATAAAG
* * * *
872072 CCAACATGTTAGAGGGGTTGACTAGGATAAAACCGATAGAGTCAACTAATTGAAAGGTTGGCAAG
65 CCAACAGGTTAGAGGGGTTGACTAGGATGAAATCGATAGAGTCAAC-AATTGAAAGGTTGGCAGG
*
872137 GCGAAACTGATAAAGCCAACAAGTTAGAGGGG
129 GCGAAACTGATAAAGCCAACAAGCTAGAGGGG
* * ** * * * * * *
872169 TTGACCATGTTGACATTGTTTGAGTCAACCAATTGAAAAGTTGGCCAGGGCAAAACCAATAAAGC
1 TTGACTAGGACGAAACTGATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCAAAACCGATAAAGC
* * *
872234 CAACAGGTTAGAGAGGTTGACCAAGATGAAATCGATAGAGTCAATCAATTGAAAGGTTGGCCAGG
66 CAACAGGTTAGAGGGGTTGACTAGGATGAAATCGATAGAGTCAA-CAATTGAAAGGTTGG-CAGG
*
872299 GCGAAACTGATAAAGCCAGCAAGCTAGAGGGG
129 GCGAAACTGATAAAGCCAACAAGCTAGAGGGG
* * ** *
872331 TTGACTAGGACGAAACTAATAGAATCAATGAATTGAAAGGTTGGCCAGGGCATAACCGATAAAGC
1 TTGACTAGGACGAAACTGATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCAAAACCGATAAAGC
* * * * *
872396 CAATAGGTTAGAGGGGTTGATTAGGGTGAAATCGATTGAGTCAACCAATTGAAAGGTTGGTTAGG
66 CAACAGGTTAGAGGGGTTGACTAGGATGAAATCGATAGAGTCAA-CAATTGAAAGGTTGG-CAGG
** * *
872461 GCGAAACTGATAAAGCCAACGGGTTAGAAGGG
129 GCGAAACTGATAAAGCCAACAAGCTAGAGGGG
* * * * * * * * * * * *
872493 TTGACCAAGATGAAACCGATAGAGTCAGCTAGTTAAAAGGTTAGCTAGGGAAAAATCGATAAAGC
1 TTGACTAGGACGAAACTGATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCAAAACCGATAAAGC
* *
872558 TAACAGGTTAGAGGCGTTGAC
66 CAACAGGTTAGAGGGGTTGAC
872579 CAGGGCGAAA
Statistics
Matches: 333, Mismatches: 71, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
158 34 0.10
159 2 0.01
160 2 0.01
161 63 0.19
162 232 0.70
ACGTcount: A:0.37, C:0.14, G:0.28, T:0.20
Consensus pattern (160 bp):
TTGACTAGGACGAAACTGATAGAGTCAACCAATTGAAAGGTTGGCCAGGGCAAAACCGATAAAGC
CAACAGGTTAGAGGGGTTGACTAGGATGAAATCGATAGAGTCAACAATTGAAAGGTTGGCAGGGC
GAAACTGATAAAGCCAACAAGCTAGAGGGG
Found at i:872590 original size:243 final size:242
Alignment explanation
Indices: 872022--872593 Score: 640
Period size: 243 Copynumber: 2.4 Consensus size: 242
872012 TGACTAGGGC
* * * *
872022 GAAACTGATAGAGTCAACCAATTAAAAGGTT-GGC-GGTG--AAATCGATAAAGCCAACATGTTA
1 GAAACCGATAGAGTCAATCAATTAAAAGGTTAGCCAGG-GAAAAATCGATAAAGCCAACAAGTTA
** ** * *
872083 GAGGGGTTGACTAGGATAAAACCGATAGAGTCAACTAATTGAAAGGTTGGCAAGGCGAAACTGAT
65 GAGGGGTTGACTAGGACGAAACTAATAGAATCAACTAATTGAAAGGTTGGCAAGGCGAAACCGAT
* * * * *
872148 AAAGCCAACAAGTTAGAGGGGTTGACCATGTTGACATTGTTTGAGTCAACCAATTGAAAAGTTGG
130 AAAGCCAACAAGTTAGAGGGGTTGACCAGGGTGAAATCGATTGAGTCAACCAATTGAAAAGTTGG
872213 CCAGGGCAAAACCAATAAAGCCAACAGGTTAGAGAGGTTGACCAAGAT
195 CCAGGGCAAAACCAATAAAGCCAACAGGTTAGAGAGGTTGACCAAGAT
* * * ** * *
872261 GAAATCGATAGAGTCAATCAATTGAAAGGTTGGCCAGGGCGAAA-CTGATAAAGCCAGCAAGCTA
1 GAAACCGATAGAGTCAATCAATTAAAAGGTTAGCCAGGGAAAAATC-GATAAAGCCAACAAGTTA
*
872325 GAGGGGTTGACTAGGACGAAACTAATAGAATCAA-TGAATTGAAAGGTTGGCCAGG-GCATAACC
65 GAGGGGTTGACTAGGACGAAACTAATAGAATCAACT-AATTGAAAGGTTGGCAAGGCG-A-AACC
* * ** *
872388 GATAAAGCCAATAGGTTAGAGGGGTTGATTAGGGTGAAATCGATTGAGTCAACCAATTGAAAGGT
127 GATAAAGCCAACAAGTTAGAGGGGTTGACCAGGGTGAAATCGATTGAGTCAACCAATTGAAAAGT
** * ** *
872453 TGGTTAGGGCGAAACTGATAAAGCCAACGGGTTAGA-AGGGTTGACCAAGAT
192 TGGCCAGGGCAAAACCAATAAAGCCAACAGGTTAGAGA-GGTTGACCAAGAT
* * * * *
872504 GAAACCGATAGAGTC-AGCTAGTTAAAAGGTTAGCTAGGGAAAAATCGATAAAGCTAACAGGTTA
1 GAAACCGATAGAGTCAATC-AATTAAAAGGTTAGCCAGGGAAAAATCGATAAAGCCAACAAGTTA
* * *
872568 GAGGCGTTGACCAGGGCGAAACTAAT
65 GAGGGGTTGACTAGGACGAAACTAAT
872594 TAAAAGCCTA
Statistics
Matches: 276, Mismatches: 46, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
239 27 0.10
240 3 0.01
241 5 0.02
242 69 0.25
243 171 0.62
244 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.28, T:0.20
Consensus pattern (242 bp):
GAAACCGATAGAGTCAATCAATTAAAAGGTTAGCCAGGGAAAAATCGATAAAGCCAACAAGTTAG
AGGGGTTGACTAGGACGAAACTAATAGAATCAACTAATTGAAAGGTTGGCAAGGCGAAACCGATA
AAGCCAACAAGTTAGAGGGGTTGACCAGGGTGAAATCGATTGAGTCAACCAATTGAAAAGTTGGC
CAGGGCAAAACCAATAAAGCCAACAGGTTAGAGAGGTTGACCAAGAT
Found at i:873117 original size:88 final size:87
Alignment explanation
Indices: 873001--873246 Score: 316
Period size: 88 Copynumber: 2.8 Consensus size: 87
872991 AGGAAACCAA
* * * * *
873001 GCTTTGTGATGCATTAATACCTTTTAGTGGTCGAGTGAAGGGGATATGATTGGGAATGTGTGGGC
1 GCTTTGTGATGCATAAATACCATCTAGTGGTTGAGTGAAGGGGATATGATTGGGAATGTATGGGC
873066 TACACCTTGCCCAAGAAAATTAG
66 TACACCTTGCCCAA-AAAATTAG
* *
873089 GCTTTGTGATGCATAAATACCATCTAGTGGTTTGA-TGAAAGGGATATGATTGGGAAGGTATGGG
1 GCTTTGTGATGCATAAATACCATCTAGTGG-TTGAGTGAAGGGGATATGATTGGGAATGTATGGG
* ***
873153 CTACACCTTGCCCTAATTTTTAG
65 CTACACCTTGCCCAAAAAATTAG
* * *
873176 GCTTTGTGATGCATCAATACCATCTAGTGATTG-GATAAAGGGGATATGATTGGGAATGTATGGG
1 GCTTTGTGATGCATAAATACCATCTAGTGGTTGAG-TGAAGGGGATATGATTGGGAATGTATGGG
*
873240 CTGCACC
65 CTACACC
873247 CTTTCCCTTT
Statistics
Matches: 138, Mismatches: 17, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
86 3 0.02
87 65 0.47
88 67 0.49
89 3 0.02
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (87 bp):
GCTTTGTGATGCATAAATACCATCTAGTGGTTGAGTGAAGGGGATATGATTGGGAATGTATGGGC
TACACCTTGCCCAAAAAATTAG
Found at i:873220 original size:87 final size:87
Alignment explanation
Indices: 873001--873246 Score: 307
Period size: 87 Copynumber: 2.8 Consensus size: 87
872991 AGGAAACCAA
* * * * * *
873001 GCTTTGTGATGCATTAATACCTTTTAGTGGTCGAGTGAAGGGGATATGATTGGGAATGTGTGGGC
1 GCTTTGTGATGCATAAATACCATCTAGTGTTCGA-TAAAGGGGATATGATTGGGAATGTATGGGC
873066 TACACCTTGCCCAAGAAAATTAG
65 TACACCTTGCCCAAGAAAATTAG
* *
873089 GCTTTGTGATGCATAAATACCATCTAGTGGTTTGATGAAA-GGGATATGATTGGGAAGGTATGGG
1 GCTTTGTGATGCATAAATACCATCTAGT-GTTCGAT-AAAGGGGATATGATTGGGAATGTATGGG
* ***
873153 CTACACCTTGCCCTA-ATTTTTAG
64 CTACACCTTGCCCAAGAAAATTAG
* *
873176 GCTTTGTGATGCATCAATACCATCTAGTGATTGGATAAAGGGGATATGATTGGGAATGTATGGGC
1 GCTTTGTGATGCATAAATACCATCTAGTG-TTCGATAAAGGGGATATGATTGGGAATGTATGGGC
*
873241 TGCACC
65 TACACC
873247 CTTTCCCTTT
Statistics
Matches: 138, Mismatches: 16, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
86 4 0.03
87 66 0.48
88 62 0.45
89 6 0.04
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (87 bp):
GCTTTGTGATGCATAAATACCATCTAGTGTTCGATAAAGGGGATATGATTGGGAATGTATGGGCT
ACACCTTGCCCAAGAAAATTAG
Found at i:873614 original size:81 final size:81
Alignment explanation
Indices: 873454--873614 Score: 180
Period size: 81 Copynumber: 2.0 Consensus size: 81
873444 AGGCAAATAC
* * * *
873454 GAATGTCATCAAATAGTACAAACACATATGAAATGATGTAAATGCAAGATTTAATAAAATAGCAG
1 GAATGTCATCAAATAGTACAAACACACATGAAATAATGTAAATGCAAGATTTAATAAAATAGAAA
*
873519 ATGCATATGGAATGAT
66 ATGCATATGAAATGAT
* * * * * * * *
873535 GAATGTTATCTAATAGTGCAAATACACGTGAAATAATGTGAATGCAAGCA-TTAGTAAAATGGAA
1 GAATGTCATCAAATAGTACAAACACACATGAAATAATGTAAATGCAAG-ATTTAATAAAATAGAA
*
873599 AATGCCTATGAAATGA
65 AATGCATATGAAATGA
873615 GGCAAATACT
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
81 64 0.98
82 1 0.02
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.26
Consensus pattern (81 bp):
GAATGTCATCAAATAGTACAAACACACATGAAATAATGTAAATGCAAGATTTAATAAAATAGAAA
ATGCATATGAAATGAT
Found at i:873979 original size:17 final size:15
Alignment explanation
Indices: 873954--873988 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 15
873944 AAGTATTCAG
873954 TTTTTTTGGTTTTTGT
1 TTTTTTTGGTTTTT-T
873970 TTTTTGTTGGTTTTTT
1 TTTTT-TTGGTTTTTT
873986 TTT
1 TTT
873989 GTAACCCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (15 bp):
TTTTTTTGGTTTTTT
Found at i:874623 original size:17 final size:16
Alignment explanation
Indices: 874601--874639 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
874591 ATTCTTTCCA
874601 TTTTTTTTGCTTTTTCT
1 TTTTTTTTGCTTTTT-T
*
874618 TTTTTTTTTCTTTTTT
1 TTTTTTTTGCTTTTTT
874634 TTTTTT
1 TTTTTT
874640 GCTTATTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.90
Consensus pattern (16 bp):
TTTTTTTTGCTTTTTT
Found at i:874638 original size:12 final size:11
Alignment explanation
Indices: 874611--874637 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
874601 TTTTTTTTGC
874611 TTTTTCTTTTT
1 TTTTTCTTTTT
874622 TTTTTCTTTTT
1 TTTTTCTTTTT
874633 TTTTT
1 TTTTT
874638 TTGCTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:876036 original size:32 final size:32
Alignment explanation
Indices: 875994--876102 Score: 109
Period size: 32 Copynumber: 3.5 Consensus size: 32
875984 CCAAAAAATT
875994 AAAAA-CCCGAACCCAAAATTACCTCAACCCG
1 AAAAAGCCCGAACCCAAAATTACCTCAACCCG
* * * *
876025 AAATAGCCCGAACCCAAGA-TAGCTCGAACTCG
1 AAAAAGCCCGAACCCAAAATTACCTC-AACCCG
* * *
876057 AAAAAGCCCAAACCCAAAATAACC-CAATCCG
1 AAAAAGCCCGAACCCAAAATTACCTCAACCCG
876088 AAAGAA-CCCGAACCC
1 AAA-AAGCCCGAACCC
876103 GAGAGAACCT
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
31 24 0.39
32 36 0.58
33 2 0.03
ACGTcount: A:0.45, C:0.36, G:0.11, T:0.08
Consensus pattern (32 bp):
AAAAAGCCCGAACCCAAAATTACCTCAACCCG
Found at i:876038 original size:16 final size:16
Alignment explanation
Indices: 876019--876104 Score: 68
Period size: 16 Copynumber: 5.4 Consensus size: 16
876009 AAATTACCTC
876019 AACCCGAAATAGCCCG
1 AACCCGAAATAGCCCG
*
876035 AACCC-AAGATAGCTCG
1 AACCCGAA-ATAGCCCG
* * *
876051 AACTCGAAAAAGCCCA
1 AACCCGAAATAGCCCG
* *
876067 AACCCAAAATAACCC-
1 AACCCGAAATAGCCCG
* * *
876082 AATCCGAAAGAACCCG
1 AACCCGAAATAGCCCG
876098 AACCCGA
1 AACCCGA
876105 GAGAACCTGA
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
15 14 0.26
16 38 0.70
17 2 0.04
ACGTcount: A:0.44, C:0.35, G:0.14, T:0.07
Consensus pattern (16 bp):
AACCCGAAATAGCCCG
Found at i:876109 original size:16 final size:16
Alignment explanation
Indices: 875997--876116 Score: 52
Period size: 16 Copynumber: 7.6 Consensus size: 16
875987 AAAAATTAAA
* *
875997 AACCCGAACCCAAAAT
1 AACCCGAACCCGAAAG
* *
876013 TACCTC-AACCCGAAAT
1 AACC-CGAACCCGAAAG
*
876029 AGCCCGAACCC--AAG
1 AACCCGAACCCGAAAG
* *
876043 ATAGCTCGAACTCGAAA-
1 A-A-CCCGAACCCGAAAG
* * *
876060 AAGCCCAAACCCAAAAT
1 AA-CCCGAACCCGAAAG
*
876077 AACCC-AATCCGAAAG
1 AACCCGAACCCGAAAG
*
876092 AACCCGAACCCGAGAG
1 AACCCGAACCCGAAAG
*
876108 AACCTGAAC
1 AACCCGAAC
876117 TTGAGATTGA
Statistics
Matches: 78, Mismatches: 18, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
14 3 0.04
15 13 0.17
16 56 0.72
17 4 0.05
18 2 0.03
ACGTcount: A:0.43, C:0.35, G:0.13, T:0.08
Consensus pattern (16 bp):
AACCCGAACCCGAAAG
Found at i:879122 original size:19 final size:20
Alignment explanation
Indices: 879085--879124 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
879075 TCCCGTGTAA
879085 ATGTATCGATACAATTTTTG
1 ATGTATCGATACAATTTTTG
879105 ATGTATCGATAC-ATTTTTG
1 ATGTATCGATACAATTTTTG
879124 A
1 A
879125 AAATATAGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (20 bp):
ATGTATCGATACAATTTTTG
Found at i:879185 original size:13 final size:13
Alignment explanation
Indices: 879167--879192 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
879157 CAATTTTTTG
879167 TGTATCGATACAT
1 TGTATCGATACAT
879180 TGTATCGATACAT
1 TGTATCGATACAT
879193 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:881596 original size:155 final size:156
Alignment explanation
Indices: 881423--881790 Score: 355
Period size: 155 Copynumber: 2.4 Consensus size: 156
881413 ACTCGAAAAT
** *
881423 CCTAAAAGACTTGGAAAAGATTACAGAAAGGATGAACCTATCCAAAATACCCACCTTCA-GCATA
1 CCTAAAAGACTTAAAAAAGATTACAGAAAGGATGAACCTATCCTAAATACCCACCTTCATGCATA
* * *
881487 GAAGCGGATCCGT-TGATAACCTAAGAC-TCAATTTT-AGAAAATTATTAAAATACCCCTAAAGG
66 AAAGCGGA-CC-TATGACAACCTAAGACAT-AATTTTAAGAAAATTATGAAAATACCCCTAAAGG
* * *
881549 AT-ACTTTTGACGTGA-AAGTG-TTCGATACC
128 ATAAC-TTCGAC-TGAGAAGTGCCT-GACACC
* *
881578 CCTAAAAGACTTAAAAAAGATTTA-AGATGAA--ATGAACCTATCCTAAACACCCACCTT-ATGT
1 CCTAAAAGACTTAAAAAAGA-TTACAGA--AAGGATGAACCTATCCTAAATACCCACCTTCATGC
* * * * * * *
881639 ATAAAAGTGGACCTAGTGACGACTTAGGACATGATTTTAAGAAAATTATGAAAATGCCCCTAAGG
63 ATAAAAGCGGACCTA-TGACAACCTAAGACATAATTTTAAGAAAATTATGAAAATACCCCTAAAG
*
881704 GATAACTTCGACTTAGAAGTGCCTGACACC
127 GATAACTTCGACTGAGAAGTGCCTGACACC
* * * *
881734 CCTAAAGGA-TTTAAAAATATTACAGAAAGGATGAACCTATCCTAAATAACCACCTTC
1 CCTAAAAGACTTAAAAAAGATTACAGAAAGGATGAACCTATCCTAAATACCCACCTTC
881791 GGCAAAAAAA
Statistics
Matches: 174, Mismatches: 24, Indels: 29
0.77 0.11 0.13
Matches are distributed among these distances:
153 3 0.02
154 6 0.03
155 107 0.61
156 53 0.30
157 5 0.03
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.24
Consensus pattern (156 bp):
CCTAAAAGACTTAAAAAAGATTACAGAAAGGATGAACCTATCCTAAATACCCACCTTCATGCATA
AAAGCGGACCTATGACAACCTAAGACATAATTTTAAGAAAATTATGAAAATACCCCTAAAGGATA
ACTTCGACTGAGAAGTGCCTGACACC
Found at i:883137 original size:22 final size:21
Alignment explanation
Indices: 883110--883150 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
883100 TAATGAAAAT
883110 TTTTTTTCTTAGTGTTTTTGTA
1 TTTTTTTCTTAGT-TTTTTGTA
883132 TTTTTTTCTTAGTTTTTTG
1 TTTTTTTCTTAGTTTTTTG
883151 CTTCAATCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.07, C:0.05, G:0.12, T:0.76
Consensus pattern (21 bp):
TTTTTTTCTTAGTTTTTTGTA
Found at i:886721 original size:747 final size:747
Alignment explanation
Indices: 885380--889120 Score: 7421
Period size: 747 Copynumber: 5.0 Consensus size: 747
885370 ATTTTTGAGT
885380 GAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGGTTGGAGTGTCTTCGATGATGACAATTT
1 GAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGGTTGGAGTGTCTTCGATGATGACAATTT
885445 AAACGAGATTAAGATTTAAACTTTGAAGAGTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAGGAA
66 AAACGAGATTAAGATTTAAACTTTGAAGAGTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAGGAA
885510 TAGGGTTGCAGTATCCCGATAAATAAAATTTTTGATATTTGTTTATAAAAAAAATTGATATGAAT
131 TAGGGTTGCAGTATCCCGATAAATAAAATTTTTGATATTTGTTTATAAAAAAAATTGATATGAAT
885575 GAGGGCGAAAAAGATGTAAAAGTATTTGCACCTTGACATAGTCTAAAGGAAGTCCAAAAGGATTT
196 GAGGGCGAAAAAGATGTAAAAGTATTTGCACCTTGACATAGTCTAAAGGAAGTCCAAAAGGATTT
885640 CAAGGCTGATTGGGGTTATACGGAGACATCCGAGTGCCTCAGGATGGAATCCGGGAAAATAAACC
261 CAAGGCTGATTGGGGTTATACGGAGACATCCGAGTGCCTCAGGATGGAATCCGGGAAAATAAACC
*
885705 AATTTTGACAACAACTAAAAACAGGGGATGCCATCGTGCTATCTTATTTTCTAAATTTATTTCAG
326 AATTTTGACAACAACTAAAAACAGGGGATGCCATCGTGCTGTCTTATTTTCTAAATTTATTTCAG
885770 GTTGATTCCAAAGTTCTAAAAGATAAAAAGGGTACTGTTTGAAAGGTGACTCGATGAGGATCGAT
391 GTTGATTCCAAAGTTCTAAAAGATAAAAAGGGTACTGTTTGAAAGGTGACTCGATGAGGATCGAT
885835 TTAAAAATATTTCAAAAATCTCTAAAAATCTTTTTCCCAATGGAATAAATTTTCAAAAACAGGTG
456 TTAAAAATATTTCAAAAATCTCTAAAAATCTTTTTCCCAATGGAATAAATTTTCAAAAACAGGTG
885900 AAATGTGCTACTGGCAGAGTATATGAAGCAAAGGTGTGACAAACTTTGAAAAATCACCCCGAATT
521 AAATGTGCTACTGGCAGAGTATATGAAGCAAAGGTGTGACAAACTTTGAAAAATCACCCCGAATT
885965 CGTTTGGTGTCAAAAAATTTCAAAATATACCTTTCCAAAAAGTAATTTCATGAAGTTTTTATGAA
586 CGTTTGGTGTCAAAAAATTTCAAAATATACCTTTCCAAAAAGTAATTTCATGAAGTTTTTATGAA
886030 AAATGTTTGAAAATTTTGGAAAAATTATTTAGTGGGCCAAAACAGCCTGACCAGAATGTGAATCA
651 AAATGTTTGAAAATTTTGGAAAAATTATTTAGTGGGCCAAAACAGCCTGACCAGAATGTGAATCA
886095 CTGATTCTAGGGGTTCTAGATAGTTTAGGTTC
716 CTGATTCTAGGGGTTCTAGATAGTTTAGGTTC
886127 GAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGGTTGGAGTGTCTTCGATGATGACAATTT
1 GAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGGTTGGAGTGTCTTCGATGATGACAATTT
886192 AAACGAGATTAAGATTTAAACTTTGAAGAGTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAGGAA
66 AAACGAGATTAAGATTTAAACTTTGAAGAGTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAGGAA
886257 TAGGGTTGCAGTATCCCGATAAATAAAATTTTTGATATTTGTTTATAAAAAAAATTGATATGAAT
131 TAGGGTTGCAGTATCCCGATAAATAAAATTTTTGATATTTGTTTATAAAAAAAATTGATATGAAT
886322 GAGGGCGAAAAAGATGTAAAAGTATTTGCACCTTGACATAGTCTAAAGGAAGTCCAAAAGGATTT
196 GAGGGCGAAAAAGATGTAAAAGTATTTGCACCTTGACATAGTCTAAAGGAAGTCCAAAAGGATTT
886387 CAAGGCTGATTGGGGTTATACGGAGACATCCGAGTGCCTCAGGATGGAATCCGGGAAAATAAACC
261 CAAGGCTGATTGGGGTTATACGGAGACATCCGAGTGCCTCAGGATGGAATCCGGGAAAATAAACC
886452 AATTTTGACAACAACTAAAAACAGGGGATGCCATCGTGCTGTCTTATTTTCTAAATTTATTTCAG
326 AATTTTGACAACAACTAAAAACAGGGGATGCCATCGTGCTGTCTTATTTTCTAAATTTATTTCAG
*
886517 GTTGATTCCAAAGTTCTAAAAGATAAAAAAGGTACTGTTTGAAAGGTGACTCGATGAGGATCGAT
391 GTTGATTCCAAAGTTCTAAAAGATAAAAAGGGTACTGTTTGAAAGGTGACTCGATGAGGATCGAT
886582 TTAAAAATATTTCAAAAATCTCTAAAAATCTTTTTCCCAATGGAATAAATTTTCAAAAACAGGTG
456 TTAAAAATATTTCAAAAATCTCTAAAAATCTTTTTCCCAATGGAATAAATTTTCAAAAACAGGTG
*
886647 AAATGTGCTACTGGCAGAGTATATGAAGTAAAGGTGTGACAAACTTTGAAAAATCACCCCGAATT
521 AAATGTGCTACTGGCAGAGTATATGAAGCAAAGGTGTGACAAACTTTGAAAAATCACCCCGAATT
886712 CGTTTGGTGTCAAAAAATTTCAAAATATACCTTTCCAAAAAGTAATTTCATGAAGTTTTTATGAA
586 CGTTTGGTGTCAAAAAATTTCAAAATATACCTTTCCAAAAAGTAATTTCATGAAGTTTTTATGAA
*
886777 AAATGTTTGAAAATTTTGGAAAAATTATTTAGTGGGCCAAAACAGCCTGACCAGAATTTGAATCA
651 AAATGTTTGAAAATTTTGGAAAAATTATTTAGTGGGCCAAAACAGCCTGACCAGAATGTGAATCA
886842 CTGATTCTAGGGGTTCTAGATAGTTTAGGTTC
716 CTGATTCTAGGGGTTCTAGATAGTTTAGGTTC
886874 GAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGGTTGGAGTGTCTTCGATGATGACAATTT
1 GAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGGTTGGAGTGTCTTCGATGATGACAATTT
886939 AAACGAGATTAAGATTTAAACTTTGAAGAGTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAGGAA
66 AAACGAGATTAAGATTTAAACTTTGAAGAGTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAGGAA
887004 TAGGGTTGCAGTATCCCGATAAATAAAATTTTTGATATTTGTTTATAAAAAAAATTGATATGAAT
131 TAGGGTTGCAGTATCCCGATAAATAAAATTTTTGATATTTGTTTATAAAAAAAATTGATATGAAT
887069 GAGGGCGAAAAAGATGTAAAAGTATTTGCACCTTGACATAGTCTAAAGGAAGTCCAAAAGGATTT
196 GAGGGCGAAAAAGATGTAAAAGTATTTGCACCTTGACATAGTCTAAAGGAAGTCCAAAAGGATTT
887134 CAAGGCTGATTGGGGTTATACGGAGACATCCGAGTGCCTCAGGATGGAATCCGGGAAAATAAACC
261 CAAGGCTGATTGGGGTTATACGGAGACATCCGAGTGCCTCAGGATGGAATCCGGGAAAATAAACC
887199 AATTTTGACAACAACTAAAAACAGGGGATGCCATCGTGCTGTCTTATTTTCTAAATTTATTTCAG
326 AATTTTGACAACAACTAAAAACAGGGGATGCCATCGTGCTGTCTTATTTTCTAAATTTATTTCAG
887264 GTTGATTCCAAAGTTCTAAAAGATAAAAAGGGTACTGTTTGAAAGGTGACTCGATGAGGATCGAT
391 GTTGATTCCAAAGTTCTAAAAGATAAAAAGGGTACTGTTTGAAAGGTGACTCGATGAGGATCGAT
887329 TTAAAAATATTTCAAAAATCTCTAAAAATCTTTTTCCCAATGGAATAAATTTTCAAAAACAGGTG
456 TTAAAAATATTTCAAAAATCTCTAAAAATCTTTTTCCCAATGGAATAAATTTTCAAAAACAGGTG
887394 AAATGTGCTACTGGCAGAGTATATGAAGCAAAGGTGTGACAAACTTTGAAAAATCACCCCGAATT
521 AAATGTGCTACTGGCAGAGTATATGAAGCAAAGGTGTGACAAACTTTGAAAAATCACCCCGAATT
887459 CGTTTGGTGTCAAAAAATTTCAAAATATACCTTTCCAAAAAGTAATTTCATGAAGTTTTTATGAA
586 CGTTTGGTGTCAAAAAATTTCAAAATATACCTTTCCAAAAAGTAATTTCATGAAGTTTTTATGAA
887524 AAATGTTTGAAAATTTTGGAAAAATTATTTAGTGGGCCAAAACAGCCTGACCAGAATGTGAATCA
651 AAATGTTTGAAAATTTTGGAAAAATTATTTAGTGGGCCAAAACAGCCTGACCAGAATGTGAATCA
887589 CTGATTCTAGGGGTTCTAGATAGTTTAGGTTC
716 CTGATTCTAGGGGTTCTAGATAGTTTAGGTTC
887621 GAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGGTTGGAGTGTCTTCGATGATGACAATTT
1 GAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGGTTGGAGTGTCTTCGATGATGACAATTT
887686 AAACGAGATTAAGATTTAAACTTTGAAGAGTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAGGAA
66 AAACGAGATTAAGATTTAAACTTTGAAGAGTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAGGAA
887751 TAGGGTTGCAGTATCCCGATAAATAAAATTTTTGATATTTGTTTATAAAAAAAATTGATATGAAT
131 TAGGGTTGCAGTATCCCGATAAATAAAATTTTTGATATTTGTTTATAAAAAAAATTGATATGAAT
887816 GAGGGCGAAAAAGATGTAAAAGTATTTGCACCTTGACATAGTCTAAAGGAAGTCCAAAAGGATTT
196 GAGGGCGAAAAAGATGTAAAAGTATTTGCACCTTGACATAGTCTAAAGGAAGTCCAAAAGGATTT
*
887881 CAAGGCTGATTGGGGTTATACGGAGACATCCGAGTGCCTCAAGATGGAATCCGGGAAAATAAACC
261 CAAGGCTGATTGGGGTTATACGGAGACATCCGAGTGCCTCAGGATGGAATCCGGGAAAATAAACC
887946 AATTTTGACAACAACTAAAAACAGGGGATGCCATCGTGCTGTCTTATTTTCTAAATTTATTTCAG
326 AATTTTGACAACAACTAAAAACAGGGGATGCCATCGTGCTGTCTTATTTTCTAAATTTATTTCAG
888011 GTTGATTCCAAAGTTCTAAAAGATAAAAAGGGTACTGTTTGAAAGGTGACTCGATGAGGATCGAT
391 GTTGATTCCAAAGTTCTAAAAGATAAAAAGGGTACTGTTTGAAAGGTGACTCGATGAGGATCGAT
888076 TTAAAAATATTTCAAAAATCTCTAAAAATCTTTTTCCCAATGGAATAAATTTTCAAAAACAGGTG
456 TTAAAAATATTTCAAAAATCTCTAAAAATCTTTTTCCCAATGGAATAAATTTTCAAAAACAGGTG
888141 AAATGTGCTACTGGCAGAGTATATGAAGCAAAGGTGTGACAAACTTTGAAAAATCACCCCGAATT
521 AAATGTGCTACTGGCAGAGTATATGAAGCAAAGGTGTGACAAACTTTGAAAAATCACCCCGAATT
888206 CGTTTGGTGTCAAAAAATTTCAAAATATACCTTTCCAAAAAGTAATTTCATGAAGTTTTTATGAA
586 CGTTTGGTGTCAAAAAATTTCAAAATATACCTTTCCAAAAAGTAATTTCATGAAGTTTTTATGAA
888271 AAATGTTTGAAAATTTTGGAAAAATTATTTAGTGGGCCAAAACAGCCTGACCAGAATGTGAATCA
651 AAATGTTTGAAAATTTTGGAAAAATTATTTAGTGGGCCAAAACAGCCTGACCAGAATGTGAATCA
888336 CTGATTCTAGGGGTTCTAGATAGTTTAGGTTC
716 CTGATTCTAGGGGTTCTAGATAGTTTAGGTTC
888368 GAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGGTTGGAGTGTCTTCGATGATGACAATTT
1 GAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGGTTGGAGTGTCTTCGATGATGACAATTT
888433 AAACGAGATTAAGATTTAAACTTTGAAGAGTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAGGAA
66 AAACGAGATTAAGATTTAAACTTTGAAGAGTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAGGAA
888498 TAGGGTTGCAGTATCCCGATAAATAAAATTTTTGATATTTGTTTATAAAAAAAATTGATATGAAT
131 TAGGGTTGCAGTATCCCGATAAATAAAATTTTTGATATTTGTTTATAAAAAAAATTGATATGAAT
888563 GAGGGCGAAAAAGATGTAAAAGTATTTGCACCTTGACATAGTCTAAAGGAAGTCCAAAAGGATTT
196 GAGGGCGAAAAAGATGTAAAAGTATTTGCACCTTGACATAGTCTAAAGGAAGTCCAAAAGGATTT
888628 CAAGGCTGATTGGGGTTATACGGAGACATCCGAGTGCCTCAGGATGGAATCCGGGAAAATAAACC
261 CAAGGCTGATTGGGGTTATACGGAGACATCCGAGTGCCTCAGGATGGAATCCGGGAAAATAAACC
888693 AATTTTGACAACAACTAAAAACAGGGGATGCCATCGTGCTGTCTTATTTTCTAAATTTATTTCAG
326 AATTTTGACAACAACTAAAAACAGGGGATGCCATCGTGCTGTCTTATTTTCTAAATTTATTTCAG
888758 GTTGATTCCAAAGTTCTAAAAGAT-AAAAGGGTACTGTTTGAAAGGTGACTCGATGAGGATCGAT
391 GTTGATTCCAAAGTTCTAAAAGATAAAAAGGGTACTGTTTGAAAGGTGACTCGATGAGGATCGAT
888822 TTAAAAATATTTCAAAAATCTCTAAAAATCTTTTTCCCAATGGAATAAATTTTCAAAAACAGGTG
456 TTAAAAATATTTCAAAAATCTCTAAAAATCTTTTTCCCAATGGAATAAATTTTCAAAAACAGGTG
*
888887 AAATGTGCTACTGGTAGAGTATATGAAGCAAAGGTGTGACAAACTTTGAAAAATCACCCCGAATT
521 AAATGTGCTACTGGCAGAGTATATGAAGCAAAGGTGTGACAAACTTTGAAAAATCACCCCGAATT
888952 CGTTTGGTGTCAAAAAATTTCAAAATATACCTTTCCAAAAAGTAATTTCATGAAGTTTTTATGAA
586 CGTTTGGTGTCAAAAAATTTCAAAATATACCTTTCCAAAAAGTAATTTCATGAAGTTTTTATGAA
889017 AAATGTTTGAAAATTTTGGAAAAATTATTTAGTGGGCCAAAACAGCCTGACCAGAATGTGAATCA
651 AAATGTTTGAAAATTTTGGAAAAATTATTTAGTGGGCCAAAACAGCCTGACCAGAATGTGAATCA
889082 CTGATTCTAGGGGTTCTAGATAGTTTAGGTTC
716 CTGATTCTAGGGGTTCTAGATAGTTTAGGTTC
889114 GAAAAAT
1 GAAAAAT
889121 CGCAACTCCC
Statistics
Matches: 2984, Mismatches: 10, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
746 338 0.11
747 2646 0.89
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.29
Consensus pattern (747 bp):
GAAAAATGGGGTTGGAGTATCCCCTCGGAAGAATGGGGTTGGAGTGTCTTCGATGATGACAATTT
AAACGAGATTAAGATTTAAACTTTGAAGAGTTTAAAAGCGAGGTTGGAGTATCCCCTCGGAGGAA
TAGGGTTGCAGTATCCCGATAAATAAAATTTTTGATATTTGTTTATAAAAAAAATTGATATGAAT
GAGGGCGAAAAAGATGTAAAAGTATTTGCACCTTGACATAGTCTAAAGGAAGTCCAAAAGGATTT
CAAGGCTGATTGGGGTTATACGGAGACATCCGAGTGCCTCAGGATGGAATCCGGGAAAATAAACC
AATTTTGACAACAACTAAAAACAGGGGATGCCATCGTGCTGTCTTATTTTCTAAATTTATTTCAG
GTTGATTCCAAAGTTCTAAAAGATAAAAAGGGTACTGTTTGAAAGGTGACTCGATGAGGATCGAT
TTAAAAATATTTCAAAAATCTCTAAAAATCTTTTTCCCAATGGAATAAATTTTCAAAAACAGGTG
AAATGTGCTACTGGCAGAGTATATGAAGCAAAGGTGTGACAAACTTTGAAAAATCACCCCGAATT
CGTTTGGTGTCAAAAAATTTCAAAATATACCTTTCCAAAAAGTAATTTCATGAAGTTTTTATGAA
AAATGTTTGAAAATTTTGGAAAAATTATTTAGTGGGCCAAAACAGCCTGACCAGAATGTGAATCA
CTGATTCTAGGGGTTCTAGATAGTTTAGGTTC
Found at i:891562 original size:21 final size:21
Alignment explanation
Indices: 891533--891589 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
891523 GAAAGTATGC
*
891533 CACTAACTTGTGGGCAGGTGT
1 CACTGACTTGTGGGCAGGTGT
*
891554 CACTGACTTGTGGGCGGGTGT
1 CACTGACTTGTGGGCAGGTGT
891575 CACTGACTTGTGGGC
1 CACTGACTTGTGGGC
891590 TTTGAAAGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.14, C:0.21, G:0.37, T:0.28
Consensus pattern (21 bp):
CACTGACTTGTGGGCAGGTGT
Found at i:891647 original size:28 final size:26
Alignment explanation
Indices: 891587--891881 Score: 148
Period size: 28 Copynumber: 10.6 Consensus size: 26
891577 CTGACTTGTG
* * *
891587 GGCTTTGAAAGGATGCTACTACTTGT
1 GGCTTTGAAAAGATGCCACTACTTGA
* *
891613 GGTCTTTGAAAGGATGCCATTAACTTGA
1 GG-CTTTGAAAAGATGCCACT-ACTTGA
*
891641 GTGCTTTTAAACAGATGCCACTGACTT-A
1 G-GCTTTGAAA-AGATGCCACT-ACTTGA
* *
891669 TGGGCTTTGAAAAGATGCCACTGATTTGTG
1 --GGCTTTGAAAAGATGCCACT-ACTTG-A
* *
891699 GGCTTTGAAAATG-TGTCACTGACTTGT
1 GGCTTTGAAAA-GATGCCACT-ACTTGA
* * *
891726 GAGCTTAGAAAAAATGCCACTGACTTGTG
1 G-GCTTTGAAAAGATGCCACT-ACTTG-A
* *
891755 GGCTTTAAAAAGGTGCCACTAACTTGTA
1 GGCTTTGAAAAGATGCCACT-ACTTG-A
* *
891783 GGCTTTGAAAAGGTGCCATTGACATGTG-
1 GGCTTTGAAAAGATGCCACT-AC-T-TGA
* *
891811 GGCTTAGAAAAGATGCCACTAACTTGTG
1 GGCTTTGAAAAGATGCCACT-ACTTG-A
* *
891839 GGCTTTG-AAAGAATGTCACTGACTTGTG
1 GGCTTTGAAAAG-ATGCCACT-ACTTG-A
*
891867 GGCTTTGAAGAGATG
1 GGCTTTGAAAAGATG
891882 AACGTTCTAG
Statistics
Matches: 217, Mismatches: 34, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
26 4 0.02
27 22 0.10
28 161 0.74
29 27 0.12
30 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (26 bp):
GGCTTTGAAAAGATGCCACTACTTGA
Found at i:891743 original size:84 final size:84
Alignment explanation
Indices: 891575--891875 Score: 356
Period size: 84 Copynumber: 3.6 Consensus size: 84
891565 GGGCGGGTGT
* * * *
891575 CACTGACTTGTGGGCTTTGAAAGGATGCTACT-ACTTGTGGTCTTTG-AAAGGATGCCATTAACT
1 CACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCATTGACT
* * **
891638 TGAGTGCTTTTAAACAGATGC
65 TGTGAGCTTAGAAA-AGATGC
* * * * *
891659 CACTGACTTATGGGCTTTGAAAAGATGCCACTGATTTGTGGGCTTTGAAAATGTGTCACTGACTT
1 CACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCATTGACTT
*
891724 GTGAGCTTAGAAAAAATGC
66 GTGAGCTTAGAAAAGATGC
* * * * *
891743 CACTGACTTGTGGGCTTTAAAAAGGTGCCACTAACTTGTAGGCTTTGAAAAGGTGCCATTGACAT
1 CACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCATTGACTT
*
891808 GTGGGCTTAGAAAAGATGC
66 GTGAGCTTAGAAAAGATGC
* *
891827 CACTAACTTGTGGGCTTTG-AAAGAATGTCACTGACTTGTGGGCTTTGAA
1 CACTGACTTGTGGGCTTTGAAAAG-ATGCCACTGACTTGTGGGCTTTGAA
891876 GAGATGAACG
Statistics
Matches: 182, Mismatches: 32, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
83 4 0.02
84 144 0.79
85 30 0.16
86 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (84 bp):
CACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCATTGACTT
GTGAGCTTAGAAAAGATGC
Found at i:891881 original size:56 final size:55
Alignment explanation
Indices: 891575--891881 Score: 312
Period size: 56 Copynumber: 5.5 Consensus size: 55
891565 GGGCGGGTGT
* * * *
891575 CACTGACTTGTGGGCTTTGAAAGGATGCTACT-ACTTGTGGTCTTTGAAAGGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-AATGC
* * * * * * *
891630 CATTAACTTGAGTGCTTTTAAACAGATGCCACTGACTTATGGGCTTTGAAAAGATGC
1 CACTGACTTGTGGGCTTTGAAA-AGATGCCACTAACTTGTGGGCTTTGAAAA-ATGC
* * * * *
891687 CACTGATTTGTGGGCTTTGAAAATG-TGTCACTGACTTGTGAGCTTAGAAAAAATGC
1 CACTGACTTGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTG-AAAAATGC
* * * *
891743 CACTGACTTGTGGGCTTTAAAAAGGTGCCACTAACTTGTAGGCTTTGAAAAGGTGC
1 CACTGACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAA-ATGC
* * * *
891799 CATTGACATGTGGGCTTAGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGAATGT
1 CACTGACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-AATGC
*
891855 CACTGACTTGTGGGCTTTGAAGAGATG
1 CACTGACTTGTGGGCTTTGAAAAGATG
891882 AACGTTCTAG
Statistics
Matches: 204, Mismatches: 40, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
55 22 0.11
56 141 0.69
57 41 0.20
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (55 bp):
CACTGACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAAATGC
Found at i:893116 original size:17 final size:18
Alignment explanation
Indices: 893094--893131 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
893084 TGGACCCTTC
893094 TTTTTTT-GTTTA-TTTG
1 TTTTTTTGGTTTATTTTG
893110 TTTTTTTGGTTTATTTTG
1 TTTTTTTGGTTTATTTTG
893128 TTTT
1 TTTT
893132 GGTACGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 7 0.35
17 5 0.25
18 8 0.40
ACGTcount: A:0.05, C:0.00, G:0.13, T:0.82
Consensus pattern (18 bp):
TTTTTTTGGTTTATTTTG
Found at i:912059 original size:14 final size:14
Alignment explanation
Indices: 912040--912073 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
912030 CTAAACTTGC
912040 AAAAATT-TTACAA
1 AAAAATTCTTACAA
912053 GAAAAATTCTTACAA
1 -AAAAATTCTTACAA
912068 AAAAAT
1 AAAAAT
912074 CTATATCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.62, C:0.09, G:0.03, T:0.26
Consensus pattern (14 bp):
AAAAATTCTTACAA
Found at i:916290 original size:28 final size:28
Alignment explanation
Indices: 916237--917266 Score: 1055
Period size: 28 Copynumber: 36.2 Consensus size: 28
916227 GTTGCCATCA
916237 ACTTGTGTAGGCTTTG-AAAGGATGCCACTG
1 ACTTGTG--GGCTTTGAAAAGG-TGCCACTG
916267 ACTTGTGGGCTTT-AAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAA-GGTGCCACTG
* * * *
916295 ACTTGTTGGCTTTAAAAAGATACCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
916323 ACTTGTGGGCTTTGAAAAGGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* *
916351 ACTTATGGGCTTTGAAAAGGGTTGCCGCTG
1 ACTTGTGGGCTTTGAAAA-GG-TGCCACTG
* * *
916381 ACTTGTGGACTTTGAAAAGATGCCGCTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* *
916409 ACTTGTAGGCTTTGAGAAGGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
916437 ACTTGTGGGCTTT-AAAAGGATGCCACTG
1 ACTTGTGGGCTTTGAAAAGG-TGCCACTG
* *
916465 ACTTGTGGGCTTTGAAAGGGTGCCACTT
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* **
916493 ACTTCTGGGCTTTGAAAATATGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* * * *
916521 ACTTGTAGCCTTTGAGAATGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* * *
916549 ACTTGTGGACTTTAAAAAAAGTTG-C-C--
1 ACTTGTGGGCTTT--GAAAAGGTGCCACTG
* *
916575 A-----GGGCTTTGAAAAGATACCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* * * *
916598 ACTTGTGGGCTTTCAGAAGGTGCTACTA
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
*
916626 ACTTGTGGGCTTTGAAAAGGGTTCCTACTG
1 ACTTGTGGGCTTTGAAAA-GGTGCC-ACTG
* * *
916656 ACTTGTAGGCTTTGAGAATGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
*
916684 ACTTGTGGGCTTTGAGAAGGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* *
916712 A-TGAGTGGGCTTTGAAAAGGGTTGCCACTA
1 ACT-TGTGGGCTTTGAAAA-GG-TGCCACTG
* *
916742 ACTTGTGGGCTTTGAAAAGATGCCACTA
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* * *
916770 ACTTGTGGGCTTTGAGAAGATGCCACTA
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
*
916798 ACTTGTGGGCTTTGAGAAGGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* *
916826 ACTTGTGGGCTTTGAAGAGATGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* *
916854 ACCTGTGGGCTTTGAGAAA-GTGCCACCG
1 ACTTGTGGGCTTTGA-AAAGGTGCCACTG
*
916882 ACTTATGGGCTTTGAAAAGGGTTGCCACTG
1 ACTTGTGGGCTTTGAAAA-GG-TGCCACTG
* * *
916912 ACTTGTGGGCTTTGAGAATGTGCCACTA
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* * *
916940 ACTTATGGGATTTGAGAAGGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
*
916968 ACTTATGGGCTTTGAAAAGGGTTGCCACTG
1 ACTTGTGGGCTTTGAAAA-GG-TGCCACTG
916998 ACTTGTGGGCTTTGAAAAGGGTTGCCACTG
1 ACTTGTGGGCTTTGAAAA-GG-TGCCACTG
* *
917028 ACTTGTGGGTTTTGAAAAGGGTTACCACTG
1 ACTTGTGGGCTTTGAAAA-GG-TGCCACTG
*
917058 ACTTGTGGGCTTTGAAAAGGGTTGCCATTG
1 ACTTGTGGGCTTTGAAAA-GG-TGCCACTG
* * *
917088 ACTTGTGGGCTTTGAGAAGGGTTGCCGCTA
1 ACTTGTGGGCTTTGA-AAAGG-TGCCACTG
917118 ACTTGTGGGCTTTGAGAAA-GTGCCACTG
1 ACTTGTGGGCTTTGA-AAAGGTGCCACTG
*
917146 ACTTGTGGGCTTTGAGAAGGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* *
917174 ACTTATGGGCTTTGAGAAGGTGCCACTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* * *
917202 ACTTGTGGGCTTTGGAAGGGTGCCACCG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTG
* *
917230 ATTTATGTGGGCTTTGAAAAGAGCTGCCACCG
1 A-CT-TGTGGGCTTTGAAAAG-G-TGCCACTG
917262 ACTTG
1 ACTTG
917267 AGTGGACTTT
Statistics
Matches: 854, Mismatches: 110, Indels: 72
0.82 0.11 0.07
Matches are distributed among these distances:
19 6 0.01
20 1 0.00
21 7 0.01
23 1 0.00
26 1 0.00
27 11 0.01
28 531 0.62
29 34 0.04
30 248 0.29
31 5 0.01
32 9 0.01
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (28 bp):
ACTTGTGGGCTTTGAAAAGGTGCCACTG
Found at i:916412 original size:86 final size:84
Alignment explanation
Indices: 916237--917266 Score: 1055
Period size: 86 Copynumber: 12.1 Consensus size: 84
916227 GTTGCCATCA
916237 ACTTGTGTAGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGGTGCCACTGACTTG
1 ACTTGTG--GGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTTGAAAA-GGTGCCACTGACTTG
* * * *
916300 TTGGCTTTAAAAAGATACCACTG
62 TGGGCTTTGAAAAGGTGCCACTG
* *
916323 ACTTGTGGGCTTTGAAAAGGTGCCACTGACTTATGGGCTTTGAAAAGGGTTGCCGCTGACTTGTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAA-GG-TGCCACTGACTTGTG
* * *
916388 GACTTTGAAAAGATGCCGCTG
64 GGCTTTGAAAAGGTGCCACTG
* *
916409 ACTTGTAGGCTTTGAGAAGGTGCCACTGACTTGTGGGCTTT-AAAAGGATGCCACTGACTTGTGG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACTTGTGG
* *
916473 GCTTTGAAAGGGTGCCACTT
65 GCTTTGAAAAGGTGCCACTG
* ** * * * * *
916493 ACTTCTGGGCTTTGAAAATATGCCACTGACTTGTAGCCTTTGAGAATGTGCCACTGACTTGTGGA
1 ACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGG
* *
916558 CTTTAAAAAAAGTTG-C-C--
66 CTTT--GAAAAGGTGCCACTG
* * * * * *
916575 A-----GGGCTTTGAAAAGATACCACTGACTTGTGGGCTTTCAGAAGGTGCTACTAACTTGTGGG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGG
*
916635 CTTTGAAAAGGGTTCCTACTG
66 CTTTGAAAA-GGTGCC-ACTG
* * * * *
916656 ACTTGTAGGCTTTGAGAATGTGCCACTGACTTGTGGGCTTTGAGAAGGTGCCACTGA-TGAGTGG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT-TGTGG
*
916720 GCTTTGAAAAGGGTTGCCACTA
65 GCTTTGAAAA-GG-TGCCACTG
* * * * *
916742 ACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAGAAGATGCCACTAACTTGTGGG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGG
*
916807 CTTTGAGAAGGTGCCACTG
66 CTTTGAAAAGGTGCCACTG
* * * * *
916826 ACTTGTGGGCTTTGAAGAGATGCCACTGACCTGTGGGCTTTGAGAAA-GTGCCACCGACTTATGG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGA-AAAGGTGCCACTGACTTGTGG
916890 GCTTTGAAAAGGGTTGCCACTG
65 GCTTTGAAAA-GG-TGCCACTG
* * * * * * *
916912 ACTTGTGGGCTTTGAGAATGTGCCACTAACTTATGGGATTTGAGAAGGTGCCACTGACTTATGGG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGG
916977 CTTTGAAAAGGGTTGCCACTG
66 CTTTGAAAA-GG-TGCCACTG
* *
916998 ACTTGTGGGCTTTGAAAAGGGTTGCCACTGACTTGTGGGTTTTGAAAAGGGTTACCACTGACTTG
1 ACTTGTGGGCTTTGAAAA-GG-TGCCACTGACTTGTGGGCTTTGAAAA-GG-TGCCACTGACTTG
*
917063 TGGGCTTTGAAAAGGGTTGCCATTG
62 TGGGCTTTGAAAA-GG-TGCCACTG
* * *
917088 ACTTGTGGGCTTTGAGAAGGGTTGCCGCTAACTTGTGGGCTTTGAGAAA-GTGCCACTGACTTGT
1 ACTTGTGGGCTTTGA-AAAGG-TGCCACTGACTTGTGGGCTTTGA-AAAGGTGCCACTGACTTGT
*
917152 GGGCTTTGAGAAGGTGCCACTG
63 GGGCTTTGAAAAGGTGCCACTG
* * * * * *
917174 ACTTATGGGCTTTGAGAAGGTGCCACTGACTTGTGGGCTTTGGAAGGGTGCCACCGATTTATGTG
1 ACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGA-CT-TGTG
*
917239 GGCTTTGAAAAGAGCTGCCACCG
64 GGCTTTGAAAAG-G-TGCCACTG
917262 ACTTG
1 ACTTG
917267 AGTGGACTTT
Statistics
Matches: 799, Mismatches: 110, Indels: 68
0.82 0.11 0.07
Matches are distributed among these distances:
75 4 0.01
76 2 0.00
77 55 0.07
79 1 0.00
81 1 0.00
82 1 0.00
83 2 0.00
84 212 0.27
85 34 0.04
86 341 0.43
87 8 0.01
88 57 0.07
89 3 0.00
90 73 0.09
91 5 0.01
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (84 bp):
ACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGG
CTTTGAAAAGGTGCCACTG
Found at i:916630 original size:77 final size:77
Alignment explanation
Indices: 916499--916643 Score: 200
Period size: 77 Copynumber: 1.9 Consensus size: 77
916489 ACTTACTTCT
* * * * *
916499 GGGCTTTGAAAATATGCCACTGACTTGTAGCCTTTGAGAATGTGCCACTGACTTGTGGACTTTAA
1 GGGCTTTGAAAAGATACCACTGACTTGTAGCCTTTCAGAAGGTGCCACTAACTTGTGGACTTTAA
916564 AAAAAGTTGCCA
66 AAAAAGTTGCCA
* * * * *
916576 GGGCTTTGAAAAGATACCACTGACTTGTGGGCTTTCAGAAGGTGCTACTAACTTGTGGGCTTTGA
1 GGGCTTTGAAAAGATACCACTGACTTGTAGCCTTTCAGAAGGTGCCACTAACTTGTGGACTTTAA
916641 AAA
66 AAA
916644 GGGTTCCTAC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
77 58 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (77 bp):
GGGCTTTGAAAAGATACCACTGACTTGTAGCCTTTCAGAAGGTGCCACTAACTTGTGGACTTTAA
AAAAAGTTGCCA
Found at i:917282 original size:32 final size:32
Alignment explanation
Indices: 917222--917284 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
917212 TTTGGAAGGG
* *
917222 TGCCACCGATTTATGTGGGCTTTGAAAAGAGC
1 TGCCACCGATTGATGTGGACTTTGAAAAGAGC
*
917254 TGCCACCGACTTGA-GTGGACTTTTAAAAGAG
1 TGCCACCGA-TTGATGTGGACTTTGAAAAGAG
917285 TTACTGCGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 24 0.89
33 3 0.11
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (32 bp):
TGCCACCGATTGATGTGGACTTTGAAAAGAGC
Found at i:917332 original size:27 final size:27
Alignment explanation
Indices: 917294--917525 Score: 164
Period size: 27 Copynumber: 8.5 Consensus size: 27
917284 GTTACTGCGA
* *
917294 AGTTGTGTACTTAAAAGAACGCCACAG
1 AGTTGTGGACTTAAAAGAATGCCACAG
* * *
917321 AGTTATGGACTTTAAAGATTGCCACAG
1 AGTTGTGGACTTAAAAGAATGCCACAG
917348 AGTTGTGGACTTTAAAAGAATGCCAC-G
1 AGTTGTGGAC-TTAAAAGAATGCCACAG
* * **
917375 AAGTTGTGGACTTGAAATGAATGCTATGG
1 -AGTTGTGGACTT-AAAAGAATGCCACAG
* * * * * *
917404 AGTTATGGACTTTAGAGGATGTCACGG
1 AGTTGTGGACTTAAAAGAATGCCACAG
* *
917431 AGTTGTGGACTTAAAA-AGGTGCCACGG
1 AGTTGTGGACTTAAAAGA-ATGCCACAG
** *
917458 AGTTGTGGACTTAAAAGGGTGCCACAA
1 AGTTGTGGACTTAAAAGAATGCCACAG
* * * **
917485 AATTATAGACTTAAAAGGGTGCCAC-G
1 AGTTGTGGACTTAAAAGAATGCCACAG
*
917511 AAGTTGTAGACTTAA
1 -AGTTGTGGACTTAA
917526 GAGGAGTGCC
Statistics
Matches: 164, Mismatches: 34, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
27 119 0.73
28 44 0.27
29 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.26
Consensus pattern (27 bp):
AGTTGTGGACTTAAAAGAATGCCACAG
Found at i:917468 original size:54 final size:54
Alignment explanation
Indices: 917294--917551 Score: 189
Period size: 54 Copynumber: 4.7 Consensus size: 54
917284 GTTACTGCGA
* * * * * * *
917294 AGTTGTGTACTTAAAAGAACGCCAC-AGAGTTATGGACTT-TAAAGATTGCCACAG
1 AGTTGTGGACTTAAAAGGATGCCACGA-AGTTGTGGACTTAAAAAG-GTGCCACGG
* * * * * *
917348 AGTTGTGGACTTTAAAAGAATGCCACGAAGTTGTGGACTTGAAATGAATGCTATGG
1 AGTTGTGGAC-TTAAAAGGATGCCACGAAGTTGTGGACTTAAAAAG-GTGCCACGG
* * * * *
917404 AGTTATGGACTTTAGAGGATGTCACGGAGTTGTGGACTTAAAAAGGTGCCACGG
1 AGTTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTAAAAAGGTGCCACGG
* * * * * * *
917458 AGTTGTGGACTTAAAAGGGTGCCACAAAATTATAGACTTAAAAGGGTGCCACGA
1 AGTTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTAAAAAGGTGCCACGG
* * *
917512 AGTTGTAGACTTAAGAGGAGTGCCACTGAA-TCGTGGACTT
1 AGTTGTGGACTTAAAAGGA-TGCCAC-GAAGTTGTGGACTT
917552 TGAAGAGGTT
Statistics
Matches: 160, Mismatches: 39, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
54 73 0.46
55 66 0.41
56 21 0.13
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (54 bp):
AGTTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTAAAAAGGTGCCACGG
Found at i:918861 original size:22 final size:23
Alignment explanation
Indices: 918815--918888 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 23
918805 TGTTGTTTCC
*
918815 TTTTTGTTTTGCTTTTGCACTTT
1 TTTTTGTTTTTCTTTTGCACTTT
918838 TTTTTGTTTTTCTTTT-CA-TATT
1 TTTTTGTTTTTCTTTTGCACT-TT
* ** *
918860 TTGTACTTTTTCTTTTG-ACCTT
1 TTTTTGTTTTTCTTTTGCACTTT
918882 TTTTTGT
1 TTTTTGT
918889 CATTTTGAAG
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
21 1 0.03
22 24 0.60
23 15 0.38
ACGTcount: A:0.07, C:0.12, G:0.09, T:0.72
Consensus pattern (23 bp):
TTTTTGTTTTTCTTTTGCACTTT
Found at i:918861 original size:23 final size:23
Alignment explanation
Indices: 918815--918861 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
918805 TGTTGTTTCC
*
918815 TTTTTGTTTTGCTTTTGCACTTT
1 TTTTTGTTTTGCTTTTGCAATTT
*
918838 TTTTTGTTTTTCTTTT-CATATTT
1 TTTTTGTTTTGCTTTTGCA-ATTT
918861 T
1 T
918862 GTACTTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.06, C:0.11, G:0.09, T:0.74
Consensus pattern (23 bp):
TTTTTGTTTTGCTTTTGCAATTT
Found at i:925281 original size:9 final size:9
Alignment explanation
Indices: 925267--925312 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
925257 ATTTCATATG
925267 TTTTTTCTT
1 TTTTTTCTT
925276 TTTTTTCTT
1 TTTTTTCTT
* *
925285 TTTCTTCAT
1 TTTTTTCTT
*
925294 TTCTTTCTT
1 TTTTTTCTT
*
925303 TTCTTTCTT
1 TTTTTTCTT
925312 T
1 T
925313 CTTACCTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:925288 original size:27 final size:27
Alignment explanation
Indices: 925252--925312 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
925242 TCTTTCATCA
* * *
925252 TTTCTATTTCAT-ATGTTTTTTCTTTTT
1 TTTCTTTTTCATCAT-TTCTTTCTTTTC
*
925279 TTTCTTTTTCTTCATTTCTTTCTTTTC
1 TTTCTTTTTCATCATTTCTTTCTTTTC
925306 TTTCTTT
1 TTTCTTT
925313 CTTACCTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (27 bp):
TTTCTTTTTCATCATTTCTTTCTTTTC
Found at i:925315 original size:17 final size:18
Alignment explanation
Indices: 925268--925304 Score: 53
Period size: 15 Copynumber: 2.2 Consensus size: 18
925258 TTTCATATGT
925268 TTTTTCTT--TTT-TTTC
1 TTTTTCTTCATTTCTTTC
925283 TTTTTCTTCATTTCTTTC
1 TTTTTCTTCATTTCTTTC
925301 TTTT
1 TTTT
925305 CTTTCTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.42
17 3 0.16
18 8 0.42
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTCTTCATTTCTTTC
Found at i:926189 original size:16 final size:16
Alignment explanation
Indices: 926168--926205 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
926158 AAATCCAAAT
926168 AAAATTTAGTGTCTTA
1 AAAATTTAGTGTCTTA
926184 AAAATTTAGTGTCTTA
1 AAAATTTAGTGTCTTA
926200 AAAATT
1 AAAATT
926206 GCCAGATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (16 bp):
AAAATTTAGTGTCTTA
Found at i:927109 original size:94 final size:94
Alignment explanation
Indices: 926944--927128 Score: 291
Period size: 94 Copynumber: 2.0 Consensus size: 94
926934 ATTTCCATAT
* * * *
926944 TTTATACATTGCCATTTAGGTACATTTCATGCACTTTTAATTGACACAAAGCTTACTTGTAATTT
1 TTTATACATTGCAATTTAGGTACATTTCAAGCACTTTTAATTGACACAAAACCTACTTGTAATTT
927009 TAAAAAATTTAGAGATCTTTTAGCATAAC
66 TAAAAAATTTAGAGATCTTTTAGCATAAC
* *
927038 TTTATACCA-TGCAATTTAGGTACATTTCAAGCACTTTTGATTGACACAAGAACCTATTTGTAAT
1 TTTATA-CATTGCAATTTAGGTACATTTCAAGCACTTTTAATTGACACAA-AACCTACTTGTAAT
927102 TTTAAAAAATTTAGAGATCTTTTAGCA
64 TTTAAAAAATTTAGAGATCTTTTAGCA
927129 GAACCTTGCA
Statistics
Matches: 83, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
94 43 0.52
95 40 0.48
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (94 bp):
TTTATACATTGCAATTTAGGTACATTTCAAGCACTTTTAATTGACACAAAACCTACTTGTAATTT
TAAAAAATTTAGAGATCTTTTAGCATAAC
Found at i:930856 original size:119 final size:119
Alignment explanation
Indices: 930702--930920 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 119
930692 CAAAACCTTA
* * *
930702 TAAATTTTAAACAATGAGTTAAATCAATAAATTTGTCCTATTTAAA-TATATTTCTTTAAAAACT
1 TAAATTGTAAACAATGAGTTAAATCAATAAATTTGTCCCATTTAAACTATAATT-TTTAAAAACT
* *
930766 TATTTAAATTTAAATCAACTAAATATTCAAAAATAGAATCCACATATAAACCCTG
65 TAATAAAATTTAAATCAACTAAATATTCAAAAATAGAATCCACATATAAACCCTG
* * * * * ** *
930821 TAAATTGTAAATAATGCGTTAAATTAATAATTTTGTCCCATTTAAATCTGTAATTTTTATTAATT
1 TAAATTGTAAACAATGAGTTAAATCAATAAATTTGTCCCATTTAAA-CTATAATTTTTAAAAACT
*
930886 TAATAAAATTTAAATCAACTAAATATTTAAAAATA
65 TAATAAAATTTAAATCAACTAAATATTCAAAAATA
930921 AAGTCCATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
119 40 0.48
120 39 0.46
121 5 0.06
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.40
Consensus pattern (119 bp):
TAAATTGTAAACAATGAGTTAAATCAATAAATTTGTCCCATTTAAACTATAATTTTTAAAAACTT
AATAAAATTTAAATCAACTAAATATTCAAAAATAGAATCCACATATAAACCCTG
Found at i:931266 original size:216 final size:216
Alignment explanation
Indices: 930817--931274 Score: 576
Period size: 216 Copynumber: 2.1 Consensus size: 216
930807 ACATATAAAC
* * * * * *
930817 CCTGTAAATTGTAAATAATGCGTTAAATTAATAATTTTGTCCCATTTAAATCTGTAATTTTTATT
1 CCTGTAAATTGTGAATAATGAGTTAAATTAATAAATTTGTCACATTAAAATATGTAATTTTTATT
*
930882 AATTTAATAAAATTTAAATCAACTAAATATTTAAAAATAAAGTCCATATAAAATTAAACTATTTC
66 AATTTAATAAAATTTAAATCAACTAAACATTTAAAAATAAAGTCCATATAAAATTAAACTATTTC
* ** * * *
930947 AATTAAAATATAGAGTGATTACTCTAAATTAGAATGATGAAAAAAAAACTAATGTAAATTAATAA
131 AATTAAAATATAAAGTGATTACTCTAAACCAAAATGATGAAAAAAAAACTAATATAAATTAACAA
*
931012 AGTAGTGTAAGTTTAAAAAAT
196 AGCAGTGTAAGTTTAAAAAAT
** * * *
931033 CCAATAAATTATGAATAATGAGTTAAATTAATAAATTTGTGATATTAAAATATGTAATTTTTATT
1 CCTGTAAATTGTGAATAATGAGTTAAATTAATAAATTTGTCACATTAAAATATGTAATTTTTATT
* * * *
931098 AATTTATTTAAATTTAAATCAACTAAACATTTAAAAATATAGTCCATATAAAATTAAACTATTTT
66 AATTTAATAAAATTTAAATCAACTAAACATTTAAAAATAAAGTCCATATAAAATTAAACTATTTC
* * * ** * * * *
931163 AATTAAAATATAAAGTGTTTGCTCTTAACCAAAATGATGAGGAAATAGCTAATATAATTTAACGA
131 AATTAAAATATAAAGTGATTACTCTAAACCAAAATGATGAAAAAAAAACTAATATAAATTAACAA
* *
931228 AGCATTGTAAGTTTCAAAAA-
196 AGCAGTGTAAGTTTAAAAAAT
* *
931248 CTTTGTAAATTGTGAATAATAAGTTAA
1 C-CTGTAAATTGTGAATAATGAGTTAA
931275 TTTCCTATAT
Statistics
Matches: 202, Mismatches: 39, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
215 1 0.00
216 201 1.00
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (216 bp):
CCTGTAAATTGTGAATAATGAGTTAAATTAATAAATTTGTCACATTAAAATATGTAATTTTTATT
AATTTAATAAAATTTAAATCAACTAAACATTTAAAAATAAAGTCCATATAAAATTAAACTATTTC
AATTAAAATATAAAGTGATTACTCTAAACCAAAATGATGAAAAAAAAACTAATATAAATTAACAA
AGCAGTGTAAGTTTAAAAAAT
Found at i:931601 original size:15 final size:16
Alignment explanation
Indices: 931570--931602 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
931560 ATTTATTTAT
*
931570 TTAAACTAATTAAAAA
1 TTAAACTAATGAAAAA
931586 TTAAACT-ATGAAAAA
1 TTAAACTAATGAAAAA
931601 TT
1 TT
931603 CTAGAGAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.33
Consensus pattern (16 bp):
TTAAACTAATGAAAAA
Found at i:932669 original size:13 final size:13
Alignment explanation
Indices: 932651--932676 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
932641 CAATTTTTTG
932651 TGTATCGATACAT
1 TGTATCGATACAT
932664 TGTATCGATACAT
1 TGTATCGATACAT
932677 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:932691 original size:32 final size:33
Alignment explanation
Indices: 932631--932694 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
932621 TACAAGCCAA
** *
932631 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
932664 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
932695 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:934790 original size:21 final size:20
Alignment explanation
Indices: 934761--934803 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
934751 GGCTAGTGTG
*
934761 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCGACCT
*
934782 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
934802 GG
1 GG
934804 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.30, G:0.44, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:935262 original size:13 final size:13
Alignment explanation
Indices: 935244--935282 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
935234 ATAATCCCCC
*
935244 TGTATCGATACAG
1 TGTATCGATACAA
935257 TGTATCGATACAA
1 TGTATCGATACAA
935270 TGTATCGATACAA
1 TGTATCGATACAA
935283 ATAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:941435 original size:13 final size:13
Alignment explanation
Indices: 941417--941442 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
941407 CAATTTTTTG
941417 TGTATCGATACAT
1 TGTATCGATACAT
941430 TGTATCGATACAT
1 TGTATCGATACAT
941443 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:942186 original size:20 final size:20
Alignment explanation
Indices: 942163--942240 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
942153 AAAGTACCCA
942163 AATGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
* *
942183 AATGTATCGATACATGT-ATG
1 AATGTATCGATACAT-TCTTC
*
942203 AATGTATCGATACATTCTTT
1 AATGTATCGATACATTCTTC
*
942223 AATGTATCAATACATTCT
1 AATGTATCGATACATTCT
942241 GTCTTTTTAC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
19 1 0.02
20 49 0.96
21 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:946080 original size:22 final size:23
Alignment explanation
Indices: 946042--946138 Score: 76
Period size: 22 Copynumber: 4.4 Consensus size: 23
946032 ATATAATAGG
*
946042 AGTAAAAGATT-AATAACATAAT
1 AGTAAATGATTCAATAACATAAT
* * *
946064 ATTATATGA-TCAATAACATAGT
1 AGTAAATGATTCAATAACATAAT
*
946086 AGTAAATGATTTAATAACAT-AT
1 AGTAAATGATTCAATAACATAAT
* * * * *
946108 AGAAAATGCTT-GATAATATATT
1 AGTAAATGATTCAATAACATAAT
946130 AGTAAATGA
1 AGTAAATGA
946139 ATGATATATG
Statistics
Matches: 57, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
21 7 0.12
22 41 0.72
23 9 0.16
ACGTcount: A:0.51, C:0.05, G:0.11, T:0.33
Consensus pattern (23 bp):
AGTAAATGATTCAATAACATAAT
Found at i:947068 original size:21 final size:22
Alignment explanation
Indices: 947042--947093 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
947032 TGTGTCATAT
947042 TTATTTTTAT-T-GTGTTT-TAA
1 TTATTTTTATATCGTGTTTGT-A
947062 TTAATTTTTATATCGTGTTTGTA
1 TT-ATTTTTATATCGTGTTTGTA
947085 TTATTTTTA
1 TTATTTTTA
947094 ATATATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
20 2 0.07
21 8 0.29
22 8 0.29
23 9 0.32
24 1 0.04
ACGTcount: A:0.21, C:0.02, G:0.10, T:0.67
Consensus pattern (22 bp):
TTATTTTTATATCGTGTTTGTA
Found at i:947850 original size:16 final size:17
Alignment explanation
Indices: 947814--947856 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 17
947804 TTGATACGTC
947814 TATATATTTATGTCATAT
1 TATAT-TTTATGTCATAT
947832 TAT-TTTTATGTCACT-T
1 TATATTTTATGTCA-TAT
947848 TATATTTTA
1 TATATTTTA
947857 ATTATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 13 0.57
17 7 0.30
18 3 0.13
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (17 bp):
TATATTTTATGTCATAT
Found at i:948124 original size:39 final size:39
Alignment explanation
Indices: 948070--948155 Score: 172
Period size: 39 Copynumber: 2.2 Consensus size: 39
948060 AATTCTAGTT
948070 ATTACTAATATTTGCAACAACAGTAAACTCATGCAATTA
1 ATTACTAATATTTGCAACAACAGTAAACTCATGCAATTA
948109 ATTACTAATATTTGCAACAACAGTAAACTCATGCAATTA
1 ATTACTAATATTTGCAACAACAGTAAACTCATGCAATTA
948148 ATTACTAA
1 ATTACTAA
948156 CTTATAAATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.31
Consensus pattern (39 bp):
ATTACTAATATTTGCAACAACAGTAAACTCATGCAATTA
Found at i:948769 original size:36 final size:35
Alignment explanation
Indices: 948725--948793 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
948715 GAATAACATG
* *
948725 ATAAATAAATTCGTAACATATTAATAATAAATAGT
1 ATAAATAAATTAGTAACATAATAATAATAAATAGT
* *
948760 ATAATATAAATTATTGACATAATAATAATAAATA
1 ATAA-ATAAATTAGTAACATAATAATAATAAATA
948794 CTTATTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 4 0.14
36 25 0.86
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (35 bp):
ATAAATAAATTAGTAACATAATAATAATAAATAGT
Found at i:953598 original size:1 final size:1
Alignment explanation
Indices: 953592--953618 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
953582 CAAATTAAGC
953592 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
953619 GGAAGATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:954499 original size:14 final size:14
Alignment explanation
Indices: 954480--954509 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
954470 TCTATTAATT
*
954480 TTTTTATTTTTATA
1 TTTTTAATTTTATA
954494 TTTTTAATTTTATA
1 TTTTTAATTTTATA
954508 TT
1 TT
954510 AACATTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTTAATTTTATA
Found at i:954920 original size:20 final size:19
Alignment explanation
Indices: 954897--954975 Score: 52
Period size: 20 Copynumber: 3.9 Consensus size: 19
954887 TATAATTTTT
954897 TTAAAAAATATTTATTTAAA
1 TTAAAAAATATTT-TTTAAA
* *
954917 TTAATATAGTATTTTATT-AA
1 TTAA-AAAATATTTT-TTAAA
* *
954937 TCAAATTAATATTTATTTAAA
1 TTAAA-AAATATTT-TTTAAA
*
954958 TATTAAAAATATTTTTTA
1 T-TAAAAAATATTTTTTA
954976 TTTTAATTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
19 1 0.02
20 23 0.50
21 20 0.43
22 2 0.04
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (19 bp):
TTAAAAAATATTTTTTAAA
Found at i:955045 original size:25 final size:27
Alignment explanation
Indices: 955003--955056 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
954993 ATCTTTAAAC
** *
955003 TTTTTAAAATAATGATAAT-TAATTTA
1 TTTTTAAAATAAAAATAATATAATATA
955029 TTTTT-AAATAAAAATAATATAATATA
1 TTTTTAAAATAAAAATAATATAATATA
955055 TT
1 TT
955057 AATATCAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
TTTTTAAAATAAAAATAATATAATATA
Found at i:957217 original size:16 final size:17
Alignment explanation
Indices: 957192--957225 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
957182 TTTATTTTTA
957192 TAAAAAATATTTA-TTT
1 TAAAAAATATTTACTTT
*
957208 TAAAAGATATTTACTTT
1 TAAAAAATATTTACTTT
957225 T
1 T
957226 CTAAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
TAAAAAATATTTACTTT
Found at i:958004 original size:16 final size:15
Alignment explanation
Indices: 957985--958021 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
957975 AATGGATGAA
957985 ATAAAAAATATAGAAT
1 ATAAAAAATATA-AAT
958001 ATAAAAAATATAAAT
1 ATAAAAAATATAAAT
*
958016 AGAAAA
1 ATAAAA
958022 GGAAGTTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (15 bp):
ATAAAAAATATAAAT
Found at i:959511 original size:165 final size:163
Alignment explanation
Indices: 959251--959778 Score: 685
Period size: 165 Copynumber: 3.2 Consensus size: 163
959241 AGAATTCCCT
*
959251 TATTTTGGAAATACAGAGTTTTCTACT-TCGTAAATG-TTTTCGGGAGGATTTTT-TTAGTTTTT
1 TATTTTTGAAATACAGAGTTTTCTACTCT-GTAAATGTTTTTCGGGAGGATTTTTCTTAGTTTTT
* * *
959313 AATTTTTAAAATTCATAAAATATTATTATTTAATTTATATTAAATCGGTTTTAAAAATTTATTCA
65 AATTTTTAAAATTCATCAAATATTATTATTTAATTTATATTAAATCGTTTTTAAAAATTAATTCA
*
959378 TTTTGATGAGTTTTTCTTTTTTTATTGAAAATCTTC
130 TTTTCATGAGTTTTT-TTTTTTT-TTGAAAATCTTC
* *
959414 TATTTTTGAAATACAGAGTTTTCTACTCTGTAAATGTTTTTGGGGGGGATTTTTCTTAGTTTTTA
1 TATTTTTGAAATACAGAGTTTTCTACTCTGTAAATGTTTTTCGGGAGGATTTTTCTTAGTTTTTA
* * *
959479 ATTTTTATAATTTATCAAATATTATTATTTAATTTATATTAAATCAGTTTTTAAAAATTCATTCA
66 ATTTTTAAAATTCATCAAATATTATTATTTAATTTATATTAAATC-GTTTTTAAAAATTAATTCA
* * *
959544 TTTTCATTCA-TTTTTGTTTTTTCTTGAAAATCTCC
130 TTTTCA-TGAGTTTTT-TTTTTTTTTGAAAATCTTC
* * *
959579 TATTTTTAAAATACAGAGTTTTCTACTCTGTAAAT-ATTTTCAGGAGGATTTTTCTTAGTTTTTA
1 TATTTTTGAAATACAGAGTTTTCTACTCTGTAAATGTTTTTCGGGAGGATTTTTCTTAGTTTTTA
* * *
959643 ATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCATTTTTAAAAAATTAATTTA
66 ATTTTTAAAATTCATCAAATATTATTATTTAATTTATATTAAATCGTTTTT-AAAAATTAATTCA
* * * *
959708 -TTTCAAGAG--TTTTTTTTCTTTGAAATTTTTC
130 TTTTCATGAGTTTTTTTTTTTTTTGAAAATCTTC
* * * * *
959739 TATTTTTGAAAAACCGAGTTTTTTATTCTATAAATGTTTT
1 TATTTTTGAAATACAGAGTTTTCTACTCTGTAAATGTTTT
959779 CGACGGAAAT
Statistics
Matches: 319, Mismatches: 38, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
160 43 0.13
161 6 0.02
162 1 0.00
163 43 0.13
164 94 0.29
165 97 0.30
166 33 0.10
167 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.09, T:0.52
Consensus pattern (163 bp):
TATTTTTGAAATACAGAGTTTTCTACTCTGTAAATGTTTTTCGGGAGGATTTTTCTTAGTTTTTA
ATTTTTAAAATTCATCAAATATTATTATTTAATTTATATTAAATCGTTTTTAAAAATTAATTCAT
TTTCATGAGTTTTTTTTTTTTTTGAAAATCTTC
Found at i:960221 original size:9 final size:9
Alignment explanation
Indices: 960209--960244 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
960199 AAAAATAGAA
960209 AGAAAAAAT
1 AGAAAAAAT
*
960218 AGAAAAAACA
1 AGAAAAAA-T
960228 AGAAAAAAT
1 AGAAAAAAT
960237 AGAAAAAA
1 AGAAAAAA
960245 AAAGTTAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.81, C:0.03, G:0.11, T:0.06
Consensus pattern (9 bp):
AGAAAAAAT
Found at i:960232 original size:19 final size:19
Alignment explanation
Indices: 960208--960244 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
960198 GAAAAATAGA
960208 AAGAAAAAATAGAAAAAAC
1 AAGAAAAAATAGAAAAAAC
960227 AAGAAAAAATAGAAAAAA
1 AAGAAAAAATAGAAAAAA
960245 AAAGTTAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.81, C:0.03, G:0.11, T:0.05
Consensus pattern (19 bp):
AAGAAAAAATAGAAAAAAC
Found at i:961439 original size:174 final size:175
Alignment explanation
Indices: 961161--961608 Score: 564
Period size: 174 Copynumber: 2.5 Consensus size: 175
961151 TTCTTATGGT
* * *
961161 TATCCATAAAGGTATAGAAATATCTAAAACTTTTT-GTATCTCTTTGGTTTTTCATTAAGGTACG
1 TATCCGTAAAGGTATAGAAATATCTAAAA-TTTTTCGTATCT-TTTCGTTTTTCATTAAGATACG
*
961225 AAATGAAATTTTTAAAAATAAAAAATAATAAAATAAAATAATAAATAAATT-TTTTTCATCCAAT
64 AAATGAAATTTTTGAAAATAAAAAATAATAAAATAAAATAATAAATAAATTCTTTTTCATCCAAT
*
961289 AAAAAATTATAACCTAAAATTTTCAAAATTTTTAATATTCCCAT-AG
129 AAAAAATTATAACCTAAAATTTTCAAAATTTCTAATATTCCCATGAG
* *
961335 TATCCGTAAAGGTATAGAAATATCTAAAATTTTTCGTATCTTTTCAGTTTTTCGTTAAGATGCGA
1 TATCCGTAAAGGTATAGAAATATCTAAAATTTTTCGTATCTTTTC-GTTTTTCATTAAGATACGA
*
961400 AATGAAATTTTTGAAAATAAAAAATAATAAAATAAAATAATAAATAAATTCTTTTTCATCTAATA
65 AATGAAATTTTTGAAAATAAAAAATAATAAAATAAAATAATAAATAAATTCTTTTTCATCCAATA
* * ** ** *
961465 AAAAATTATCACCTAAATTTTTTGAAATTTCTAATATTTTCATGGG
130 AAAAATTATAACCTAAAATTTTCAAAATTTCTAATATTCCCATGAG
*** * * * * * **
961511 TATCCGTGGGGGTATAAAAAT-TTTCAATACTTTTCGTATCTTTTCGATTCACTATTAAGATACG
1 TATCCGTAAAGGTATAGAAATATCT-AAAATTTTTCGTATCTTTTCGTTTTTC-ATTAAGATACG
*
961575 AAATG-AATTTTTGGAAATAAAAAATTAAATAAAA
64 AAATGAAATTTTTGAAAATAAAAAA-T-AATAAAA
961609 ATTATTATCT
Statistics
Matches: 238, Mismatches: 28, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
173 8 0.03
174 99 0.42
175 73 0.31
176 51 0.21
177 7 0.03
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (175 bp):
TATCCGTAAAGGTATAGAAATATCTAAAATTTTTCGTATCTTTTCGTTTTTCATTAAGATACGAA
ATGAAATTTTTGAAAATAAAAAATAATAAAATAAAATAATAAATAAATTCTTTTTCATCCAATAA
AAAATTATAACCTAAAATTTTCAAAATTTCTAATATTCCCATGAG
Found at i:961809 original size:20 final size:20
Alignment explanation
Indices: 961784--961823 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
961774 GATCTTTTTT
961784 ATACAAGGATAAAATTATCA
1 ATACAAGGATAAAATTATCA
961804 ATACAAGGATAAAATTATCA
1 ATACAAGGATAAAATTATCA
961824 TTTCTTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.25
Consensus pattern (20 bp):
ATACAAGGATAAAATTATCA
Found at i:962115 original size:154 final size:151
Alignment explanation
Indices: 961861--962283 Score: 431
Period size: 153 Copynumber: 2.7 Consensus size: 151
961851 GTTATTGGGT
* * *
961861 ACTTCTAAGTCGAGGGTATCTGCTACAG-GTATTTTTGTAATTTTTTTAGAATCGAGTTCTAGGT
1 ACTTCTAAGTCGAGGGTAT-TTCTA-AGAGCATTTTTGTAA-GTTTTTAGAATCGA-TTCTAGGT
* * * * * * * *
961925 TATCACTAGGTCTAATTTTATGTTGAAGGTGAGTATTTAGGATAGGTTCATCTCGTCTATATCCT
62 TGTCACTAGGTTTACTTTTATGTCGAAGGTGGGTATTTAAGATAGGTTCATCCCATC-ATATCCT
*
961990 TTTTAAGTCCTTTAGAGGTATC-AGAC
126 TTTTAAGTCATTTAGAGGTATCGAG-C
* * *
962016 ACTTCTAAGTCGAGGGTATTTATAAGGAGCATTTTTGTAA-TTTTCTAGAACCGATTCCTAAGTT
1 ACTTCTAAGTCGAGGGTATTTCTAA-GAGCATTTTTGTAAGTTTT-TAGAATCGATT-CTAGGTT
* * * *
962080 GTCACTAGGTTTGCTTTTATGCCGAAGGTGGGTATTTATGATAGATTCATCCCATCATATCCTTT
63 GTCACTAGGTTTACTTTTATGTCGAAGGTGGGTATTTAAGATAGGTTCATCCCATCATATCCTTT
*
962145 TTAAGTCATTTAGAGGTGTCGAGC
128 TTAAGTCATTTAGAGGTATCGAGC
* * * * * *
962169 ACTTTTAAGTCAAAGGTACCTTCT-AGAGGCATTTTTGTAAGTTTTTAGAATCGATTTTTGGGTT
1 ACTTCTAAGTCGAGGGTA-TTTCTAAGA-GCATTTTTGTAAGTTTTTAGAATCGA-TTCTAGGTT
* * * * *
962233 GTCATTGGGTTCACTTTTATGTCGAATGTGGGTATTTAAGATAAGTTCATC
63 GTCACTAGGTTTACTTTTATGTCGAAGGTGGGTATTTAAGATAGGTTCATC
962284 ACATTTATAA
Statistics
Matches: 223, Mismatches: 36, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
152 2 0.01
153 117 0.52
154 74 0.33
155 30 0.13
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.41
Consensus pattern (151 bp):
ACTTCTAAGTCGAGGGTATTTCTAAGAGCATTTTTGTAAGTTTTTAGAATCGATTCTAGGTTGTC
ACTAGGTTTACTTTTATGTCGAAGGTGGGTATTTAAGATAGGTTCATCCCATCATATCCTTTTTA
AGTCATTTAGAGGTATCGAGC
Found at i:967571 original size:24 final size:23
Alignment explanation
Indices: 967519--967573 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
967509 ATCCATGTAA
967519 TTCATGTATGAAATTAATTAGGG
1 TTCATGTATGAAATTAATTAGGG
* *
967542 TACATGTATCGATATTTAA-TAGGG
1 TTCATGTAT-GA-AATTAATTAGGG
967566 TTCATGTA
1 TTCATGTA
967574 ACAAGTCACC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 8 0.30
24 14 0.52
25 5 0.19
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (23 bp):
TTCATGTATGAAATTAATTAGGG
Found at i:972066 original size:10 final size:10
Alignment explanation
Indices: 972051--972077 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
972041 TCACCTAATG
972051 TACCTATATA
1 TACCTATATA
972061 TACCTATATA
1 TACCTATATA
972071 TACCTAT
1 TACCTAT
972078 TTGAAGTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (10 bp):
TACCTATATA
Found at i:975222 original size:152 final size:151
Alignment explanation
Indices: 975066--975413 Score: 380
Period size: 152 Copynumber: 2.3 Consensus size: 151
975056 CCGTAGAATC
*
975066 AGTTTTAAAAAATTTAATTTATTTTATGAGTTTTAGATTTTTTTTGTTACTAAGATACAAAGTTT
1 AGTTTTAAAAAATTTAATTTATTTTATGAGTTTTAGATTTTTTTTGTT-C-AAAATACAAAGTTT
* * * * *
975131 TCTATTTTGT-AAATTCTTCCGCAAGGATTTTTCTAAGTTTATAATTTTCAAAATTC-TTAAATA
64 TCTACTCTATAAAATTCTTCCGCAA-GATTTTTCTAAGTATAAAATTTTCAAAATTCATTAAATA
* * *
975194 T-TATTTTTTAATTTATATGAAATT
128 TCT-TTATTAAATTCATATGAAATT
* * * * *
975218 AGTTTTGAAAATTTTAATTTATTTTATAAGTTTTAAAATTTTTTCTGTTCAAAATACAAAGTTTT
1 AGTTTTAAAAAATTTAATTTATTTTATGAGTTTT-AGATTTTTTTTGTTCAAAATACAAAGTTTT
* ** ** * * *
975283 CTACTCTATAAAATTTTTTTGTTAGATTTTTTTGAGTATAAAATTTTTAAAATTCATTAAATATC
65 CTACTCTATAAAATTCTTCCGCAAGATTTTTCTAAGTATAAAATTTTCAAAATTCATTAAATATC
*
975348 TTTATTAAATTCATATTAAATT
130 TTTATTAAATTCATATGAAATT
* * *
975370 ATTTTTTATAAATTTAATTTATTTTATGAGTTTT-GTATTTTTTT
1 AGTTTTAAAAAATTTAATTTATTTTATGAGTTTTAG-ATTTTTTT
975414 AATGTAACAT
Statistics
Matches: 161, Mismatches: 30, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
151 53 0.33
152 95 0.59
153 13 0.08
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.54
Consensus pattern (151 bp):
AGTTTTAAAAAATTTAATTTATTTTATGAGTTTTAGATTTTTTTTGTTCAAAATACAAAGTTTTC
TACTCTATAAAATTCTTCCGCAAGATTTTTCTAAGTATAAAATTTTCAAAATTCATTAAATATCT
TTATTAAATTCATATGAAATT
Found at i:975507 original size:22 final size:22
Alignment explanation
Indices: 975481--975526 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
975471 TTTAATGGTC
*
975481 ATTTTTTA-ACAATAAAATTAA
1 ATTTTTTATAAAATAAAATTAA
* *
975502 ATTTTTTATTAAATTAAATTAA
1 ATTTTTTATAAAATAAAATTAA
975524 ATT
1 ATT
975527 GATTATATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTTTTTATAAAATAAAATTAA
Found at i:977684 original size:153 final size:154
Alignment explanation
Indices: 977406--978406 Score: 705
Period size: 153 Copynumber: 6.4 Consensus size: 154
977396 GATATTGTTA
* * * * * *
977406 TCCTTTAGGGTTACCCAGATACTTTTATGTCGAAGGTATATCTAAGGGTATTTTAGTAATTTTCT
1 TCCTTTAGGGTTACCAAGATACTTTCACGTCGAAGGTATACCCAAGGGCATTTTAGTAATTTTCT
* * * * * * * * *
977471 CAAAATTGAGTCCTAGGTAATCACCAAGTCACTTCTATAT--AAAAGAT-TCGCTTTTAGGATAA
66 CAAAATCGAGTCCTAAGTCACCACCAAATCGCTT-TA-ATGCAAAAGGTGT-ACATTTAGGATAA
*
977533 GTTT-ATCCTTTCAC-ATCATTTTCGTG
128 GTTTGA-CCTTTTACAATCATTTTCGTG
* * *
977559 TCCTTTAGGGTTACCAAAATACTTTCATGTCGAAGGTATACCCAAGGGCATTTTAGTAATTTTAT
1 TCCTTTAGGGTTACCAAGATACTTTCACGTCGAAGGTATACCCAAGGGCATTTTAGTAATTTTCT
* ** * *
977624 CATAATCGAGTCCTAAGTTGCCACCAAATCGCTTTAATGCCAAAGGTGTACATTTAGGATAGGTT
66 CAAAATCGAGTCCTAAGTCACCACCAAATCGCTTTAATGCAAAAGGTGTACATTTAGGATAAGTT
* * *
977689 TGACCTTTTATAATTATTTTCGTA
131 TGACCTTTTACAATCATTTTCGTG
** * * ** * * **
977713 TCCTTTAGGGTTACTGAGATACTTTTACATCGAAGGTATATTCAAGAGCATCTCGGTAATTTTCT
1 TCCTTTAGGGTTACCAAGATACTTTCACGTCGAAGGTATACCCAAGGGCATTTTAGTAATTTTCT
** * * * * *
977778 CAAAATCGAGTTTTAGGTCATCACCAGATTGCTTTAATGCAAAAAGTGTACATTTAGGAT-AGAT
66 CAAAATCGAGTCCTAAGTCACCACCAAATCGCTTTAATGCAAAAGGTGTACATTTAGGATAAG-T
* *
977842 TTGACATTTTACAATC-TTTTAGTG
130 TTGACCTTTTACAATCATTTTCGTG
* * * * * * *
977866 TCCTTTAGAGTTACGAGGATACTATCACGTCGAAGGTATACCAAAGGGTATTTT-GATCATTTTC
1 TCCTTTAGGGTTACCAAGATACTTTCACGTCGAAGGTATACCCAAGGGCATTTTAG-TAATTTTC
* * * * * * *
977930 TTATAATCGAGTCCTAAGTCGCCACCAGATTGCTTTAATGCCAAAGGTGTACATTTAGGATAGGT
65 TCAAAATCGAGTCCTAAGTCACCACCAAATCGCTTTAATGCAAAAGGTGTACATTTAGGATAAGT
*
977995 TTGACCTTTTACAATTATTTTCGTG
130 TTGACCTTTTACAATCATTTTCGTG
* * * ** * * *
978020 TCTTTTAGGATTATCGGGATACTTTCACGTCAAAAGTATACTAAGACACTTTTAGGGTTATCGAG
1 TCCTTTAGGGTTACCAAGATACTTTCACGTCGAAGGTATAC-----C-C----A-----A--GGG
* * * ** * *
978085 CATTTTGGTAATTTTCTCATAATCGAGTCCTAGGTCACCACCGGATCGCTTTTATGCCAAAA-AT
49 CATTTTAGTAATTTTCTCAAAATCGAGTCCTAAGTCACCACCAAATCGCTTTAATG-CAAAAGGT
* *
978149 GTACATTTAGAATAGGTTTGACCTTTTACAATC-TTTTCGTG
113 GTACATTTAGGATAAGTTTGACCTTTTACAATCATTTTCGTG
* * ** * *** * * ** * *
978190 TCATTTAAGGTTACTGAGACACTTTCTTATCGAAAGCATGTCGAAGGGCATTTTGGTAAATTTT-
1 TCCTTTAGGGTTACCAAGATACTTTCACGTCGAAGGTATACCCAAGGGCATTTTAGT-AATTTTC
* * ** * *
978254 TCACAATCGAGTCCTAGGTCACCATTAAATCGCTTTTATGCCAAAGGTGTACATTTAGGATAAGT
65 TCAAAATCGAGTCCTAAGTCACCACCAAATCGCTTTAATGCAAAAGGTGTACATTTAGGATAAGT
* *
978319 TTGACCTTCTACAATC-TTTTCATG
130 TTGACCTTTTACAATCATTTTCGTG
* ** * * * *
978343 TCCTTTAGGGTTACCGAGATA-TTTCCATATCGAAAGTATACCTAATGGCATTTTGGTAAATTTT
1 TCCTTTAGGGTTACCAAGATACTTT-CACGTCGAAGGTATACCCAAGGGCATTTTAGT-AATTTT
978407 ATAAAACCAA
Statistics
Matches: 675, Mismatches: 142, Indels: 62
0.77 0.16 0.07
Matches are distributed among these distances:
151 2 0.00
152 10 0.01
153 364 0.54
154 173 0.26
155 1 0.00
159 1 0.00
160 1 0.00
164 1 0.00
165 1 0.00
169 1 0.00
170 35 0.05
171 80 0.12
172 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (154 bp):
TCCTTTAGGGTTACCAAGATACTTTCACGTCGAAGGTATACCCAAGGGCATTTTAGTAATTTTCT
CAAAATCGAGTCCTAAGTCACCACCAAATCGCTTTAATGCAAAAGGTGTACATTTAGGATAAGTT
TGACCTTTTACAATCATTTTCGTG
Found at i:977900 original size:307 final size:311
Alignment explanation
Indices: 977551--978383 Score: 862
Period size: 324 Copynumber: 2.6 Consensus size: 311
977541 TTTCACATCA
* * * *
977551 TTTTCGTGTCCTTTAGGGTTACCAAAATACTTTCATGTCGAAGGTATACCCAAGGGCATTTTAGT
1 TTTTCGTGTCCTTTAGAGTTA-CGAGATACTTTCATGTCGAAGGTATACCAAAGGGCATTTT-GT
*
977616 AATTTTATCATAATCGAGTCCTAAGTTGCCACCAAATCGCTTTAATGCCAAAGGTGTACATTTAG
64 AATTTT-TCATAATCGAGTCCTAAGTCGCCACCAAATCGCTTTAATGCCAAAGGTGTACATTTAG
* * * *
977681 GATAGGTTTGACCTTTTATAATTATTTTCGTATCCTTTAGGGTTACTGAGATACTTTTACATC-G
128 GATAGGTTTGACCTTTTACAATTATTTTCGTGTCCTTTAGGGTTACTGAGATACTTTCACATCAA
* ** *
977745 AAG-GTA-T-A-TTCA-A-GAGCATCTCGGTAATTTTCTCAAAATCGAGTTTTAGGTCATCACCA
193 AAGTATACTAACTTCAGACGAGCATCTCGGTAATTTTCTCAAAATCGAGTCCTAGGTCACCACCA
* *
977804 GATTGCTTTAATG-CAAAAAGTGTACATTTAGGATAGATTTGACATTTTACAATC
258 GATCGCTTTAATGCCAAAAA-TGTACATTTAGAATAGATTTGACATTTTACAATC
* * * *
977858 TTTTAGTGTCCTTTAGAGTTACGAGGATACTATCACGTCGAAGGTATACCAAAGGGTATTTTGAT
1 TTTTCGTGTCCTTTAGAGTTACGA-GATACTTTCATGTCGAAGGTATACCAAAGGGCATTTTG-T
* * * *
977923 CATTTTCTTATAATCGAGTCCTAAGTCGCCACCAGATTGCTTTAATGCCAAAGGTGTACATTTAG
64 AATTTT-TCATAATCGAGTCCTAAGTCGCCACCAAATCGCTTTAATGCCAAAGGTGTACATTTAG
* * * *
977988 GATAGGTTTGACCTTTTACAATTATTTTCGTGTCTTTTAGGATTA-TCGGGATACTTTCACGTCA
128 GATAGGTTTGACCTTTTACAATTATTTTCGTGTCCTTTAGGGTTACT-GAGATACTTTCACATCA
* * * *
978052 AAAGTATACTAAGACACTTTTAGGGTTATCGAGCATTTTGGTAATTTTCTCATAATCGAGTCCTA
192 AAAGTATACT---A-AC-TTCA--G--A-CGAGCATCTCGGTAATTTTCTCAAAATCGAGTCCTA
* * * *
978117 GGTCACCACCGGATCGCTTTTATGCCAAAAATGTACATTTAGAATAGGTTTGACCTTTTACAATC
247 GGTCACCACCAGATCGCTTTAATGCCAAAAATGTACATTTAGAATAGATTTGACATTTTACAATC
* * * * * * ** *
978182 TTTTCGTGTCATTTA-AGGTTACTGAGACACTTTCTTATCGAAAGCATGTCGAAGGGCATTTTGG
1 TTTTCGTGTCCTTTAGA-GTTAC-GAGATACTTTCATGTCGAAGGTATACCAAAGGGCATTTT-G
* * * ** *
978246 TAAATTTTTCACAATCGAGTCCTAGGTCACCATTAAATCGCTTTTATGCCAAAGGTGTACATTTA
63 T-AATTTTTCATAATCGAGTCCTAAGTCGCCACCAAATCGCTTTAATGCCAAAGGTGTACATTTA
* * * * * *
978311 GGATAAGTTTGACCTTCTACAA-TCTTTTCATGTCCTTTAGGGTTACCGAGATA-TTTCCATATC
127 GGATAGGTTTGACCTTTTACAATTATTTTCGTGTCCTTTAGGGTTACTGAGATACTTT-CACATC
*
978374 GAAAGTATAC
191 AAAAGTATAC
978384 CTAATGGCAT
Statistics
Matches: 429, Mismatches: 70, Indels: 38
0.80 0.13 0.07
Matches are distributed among these distances:
306 4 0.01
307 165 0.38
308 3 0.01
309 2 0.00
310 1 0.00
315 1 0.00
317 3 0.01
322 4 0.01
323 38 0.09
324 194 0.45
325 14 0.03
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (311 bp):
TTTTCGTGTCCTTTAGAGTTACGAGATACTTTCATGTCGAAGGTATACCAAAGGGCATTTTGTAA
TTTTTCATAATCGAGTCCTAAGTCGCCACCAAATCGCTTTAATGCCAAAGGTGTACATTTAGGAT
AGGTTTGACCTTTTACAATTATTTTCGTGTCCTTTAGGGTTACTGAGATACTTTCACATCAAAAG
TATACTAACTTCAGACGAGCATCTCGGTAATTTTCTCAAAATCGAGTCCTAGGTCACCACCAGAT
CGCTTTAATGCCAAAAATGTACATTTAGAATAGATTTGACATTTTACAATC
Found at i:978442 original size:153 final size:153
Alignment explanation
Indices: 978129--978465 Score: 347
Period size: 153 Copynumber: 2.2 Consensus size: 153
978119 TCACCACCGG
** * * *
978129 ATCGCTTTTATGCCAAAAATGTACATTTAGAATAGGTTTGACCTTTTACAATCTTTTCGTGTCAT
1 ATCGCTTTTATGCCAAAGGTGTACATTTAGAATAAGTTTGACCTTCTACAATCTTTTCATGTCAT
* * ** *
978194 TTAAGGTTACTGAGACACTTTCTTATCGAAAGCATGTCGAAGGGCATTTTGGTAAATTTTTCACA
66 TTAAGGTTACCGAGACACTTTCATATCGAAAGCATACCGAAGGGCATTTTGGTAAATTTTTCAAA
* * * * * *
978259 ATCGAGTCCTAGGTCACCATTAA
131 ACCAAGTCCGAGATAACCATCAA
* *
978282 ATCGCTTTTATGCCAAAGGTGTACATTTAGGATAAGTTTGACCTTCTACAATCTTTTCATGTCCT
1 ATCGCTTTTATGCCAAAGGTGTACATTTAGAATAAGTTTGACCTTCTACAATCTTTTCATGTCAT
* * * * *
978347 TTAGGGTTACCGAGATA-TTTCCATATCGAAAGTATACCTAATGGCATTTTGGTAAATTTTAT-A
66 TTAAGGTTACCGAGACACTTT-CATATCGAAAGCATACCGAAGGGCATTTTGGTAAATTTT-TCA
* * * **
978410 AAACCAAGTTCGATATAATCATCGG
129 AAACCAAGTCCGAGATAACCATCAA
* * * *
978435 GTTGCTTTTAAGCCAAAGGTATACA-TTAGAA
1 ATCGCTTTTATGCCAAAGGTGTACATTTAGAA
978466 GTAGGTTCGT
Statistics
Matches: 149, Mismatches: 33, Indels: 5
0.80 0.18 0.03
Matches are distributed among these distances:
152 8 0.05
153 140 0.94
154 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (153 bp):
ATCGCTTTTATGCCAAAGGTGTACATTTAGAATAAGTTTGACCTTCTACAATCTTTTCATGTCAT
TTAAGGTTACCGAGACACTTTCATATCGAAAGCATACCGAAGGGCATTTTGGTAAATTTTTCAAA
ACCAAGTCCGAGATAACCATCAA
Found at i:983511 original size:14 final size:13
Alignment explanation
Indices: 983492--983526 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
983482 TTATTTAATA
983492 CAAGATATCATCTG
1 CAAGATAT-ATCTG
983506 CAAGATAATATCTG
1 CAAGAT-ATATCTG
983520 CAAGATA
1 CAAGATA
983527 CTATTCAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 1 0.05
14 17 0.85
15 2 0.10
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (13 bp):
CAAGATATATCTG
Found at i:987184 original size:13 final size:13
Alignment explanation
Indices: 987166--987192 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
987156 ACATTATGCT
987166 TTGTATCGATACA
1 TTGTATCGATACA
987179 TTGTATCGATACA
1 TTGTATCGATACA
987192 T
1 T
987193 ATTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:987201 original size:19 final size:19
Alignment explanation
Indices: 987177--987269 Score: 141
Period size: 19 Copynumber: 4.8 Consensus size: 19
987167 TGTATCGATA
987177 CATTGTATCGATACATATT
1 CATTGTATCGATACATATT
987196 CATTGTATCGATACATATT
1 CATTGTATCGATACATATT
987215 CATTGTATCGATACATATT
1 CATTGTATCGATACATATT
* * *
987234 CATTGTATCAATACACACT
1 CATTGTATCGATACATATT
*
987253 CAATTGTTTCGATACAT
1 C-ATTGTATCGATACAT
987270 GAAACTGACA
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
19 55 0.82
20 12 0.18
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (19 bp):
CATTGTATCGATACATATT
Found at i:987229 original size:51 final size:53
Alignment explanation
Indices: 987127--987230 Score: 149
Period size: 51 Copynumber: 2.0 Consensus size: 53
987117 AACCCTAAAA
*
987127 TGTATCGATACACATCCAGATGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACACATCCAGATGTATCGATACATTATGCATTGTATCGATACAT
* * * *
987180 TGTATCGATACATATTCA-TTGTATCGATACA-TATTCATTGTATCGATACAT
1 TGTATCGATACACATCCAGATGTATCGATACATTATGCATTGTATCGATACAT
987231 ATTCATTGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
51 18 0.39
52 12 0.26
53 16 0.35
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (53 bp):
TGTATCGATACACATCCAGATGTATCGATACATTATGCATTGTATCGATACAT
Done.