Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold701
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21520
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32
Found at i:139 original size:20 final size:20
Alignment explanation
Indices: 114--163 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
104 CAGTTTCATA
* *
114 TATCGATACAATTGTACATG
1 TATCGATACAAGTGAACATG
134 TATCGATAC-AGTGAACATG
1 TATCGATACAAGTGAACATG
153 TATCGATACAA
1 TATCGATACAA
164 AACATAATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (20 bp):
TATCGATACAAGTGAACATG
Found at i:606 original size:32 final size:30
Alignment explanation
Indices: 538--609 Score: 78
Period size: 32 Copynumber: 2.4 Consensus size: 30
528 AGTTTTGGCA
538 AACTTTTGATATTTGATAAATTTCTATATT
1 AACTTTTGATATTTGATAAATTTCTATATT
*
568 AA-TTTTGATAGGTTTTGATATAATTT-TTTA-T
1 AACTTTTGATA---TTTGATA-AATTTCTATATT
599 AACTTTTGATA
1 AACTTTTGATA
610 AGATTTTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
29 8 0.22
30 2 0.06
31 3 0.08
32 18 0.50
33 5 0.14
ACGTcount: A:0.32, C:0.04, G:0.10, T:0.54
Consensus pattern (30 bp):
AACTTTTGATATTTGATAAATTTCTATATT
Found at i:823 original size:15 final size:16
Alignment explanation
Indices: 793--825 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
783 TATTAACCAT
793 ATGATATTAGACATAA
1 ATGATATTAGACATAA
*
809 ATGATTTTA-ACATAA
1 ATGATATTAGACATAA
824 AT
1 AT
826 ATAACAAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (16 bp):
ATGATATTAGACATAA
Found at i:917 original size:20 final size:20
Alignment explanation
Indices: 894--1011 Score: 78
Period size: 21 Copynumber: 5.8 Consensus size: 20
884 ATTTGGTTGT
* *
894 CTTTAATATGATTTTAATAA
1 CTTTAATATAATTTTAGTAA
* *
914 CTTTAAACATAATTTTGGTAA
1 CTTT-AATATAATTTTAGTAA
*
935 CTTTTAATATCATTTTAGTAA
1 C-TTTAATATAATTTTAGTAA
*
956 -TCTTAATATAA-TTTCGTAA
1 CT-TTAATATAATTTTAGTAA
* * *
975 TCTTTAATGTAGTTTTTGTAA
1 -CTTTAATATAATTTTAGTAA
* *
996 CATTTGATACAATTTT
1 C-TTTAATATAATTTT
1012 GATAATTTTT
Statistics
Matches: 75, Mismatches: 16, Indels: 13
0.72 0.15 0.12
Matches are distributed among these distances:
19 8 0.11
20 20 0.27
21 44 0.59
22 3 0.04
ACGTcount: A:0.34, C:0.08, G:0.08, T:0.50
Consensus pattern (20 bp):
CTTTAATATAATTTTAGTAA
Found at i:949 original size:21 final size:21
Alignment explanation
Indices: 895--969 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
885 TTTGGTTGTC
* *
895 TTTAATATGATTTTAATAACT
1 TTTAATATAATTTTAGTAACT
* * *
916 TTAAACATAATTTTGGTAACT
1 TTTAATATAATTTTAGTAACT
*
937 TTTAATATCATTTTAGTAA-T
1 TTTAATATAATTTTAGTAACT
*
957 CTTAATATAATTT
1 TTTAATATAATTT
970 CGTAATCTTT
Statistics
Matches: 43, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
20 12 0.28
21 31 0.72
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (21 bp):
TTTAATATAATTTTAGTAACT
Found at i:976 original size:19 final size:20
Alignment explanation
Indices: 938--978 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
928 TTGGTAACTT
*
938 TTAATATCATTTTAGTAATC
1 TTAATATCAATTTAGTAATC
*
958 TTAATAT-AATTTCGTAATC
1 TTAATATCAATTTAGTAATC
977 TT
1 TT
979 TAATGTAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.34, C:0.10, G:0.05, T:0.51
Consensus pattern (20 bp):
TTAATATCAATTTAGTAATC
Found at i:1107 original size:21 final size:21
Alignment explanation
Indices: 1033--1110 Score: 68
Period size: 21 Copynumber: 3.7 Consensus size: 21
1023 ACGCAGTTTC
*
1033 GATAACCATTT-ATATAATTTT
1 GATAACC-TTTGATATGATTTT
* * * *
1054 GGTAAGCTTTAATATAGGTTTT
1 GATAACCTTTGATAT-GATTTT
1076 GATAACCTTTGATATGATTTT
1 GATAACCTTTGATATGATTTT
* *
1097 GTTAATCTTTGATA
1 GATAACCTTTGATA
1111 ACATTTACAT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
20 3 0.07
21 26 0.58
22 16 0.36
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (21 bp):
GATAACCTTTGATATGATTTT
Found at i:1116 original size:21 final size:21
Alignment explanation
Indices: 1072--1116 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1062 TTAATATAGG
**
1072 TTTTGATAACCTTTGATATGA
1 TTTTGATAACCTTTGATAACA
* *
1093 TTTTGTTAATCTTTGATAACA
1 TTTTGATAACCTTTGATAACA
1114 TTT
1 TTT
1117 ACATTTTGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.09, G:0.11, T:0.53
Consensus pattern (21 bp):
TTTTGATAACCTTTGATAACA
Found at i:1208 original size:41 final size:40
Alignment explanation
Indices: 1163--1325 Score: 152
Period size: 41 Copynumber: 4.0 Consensus size: 40
1153 TTTATAGTTT
* *
1163 TTTATATAATTTTGGTAACTTTTGAAATAATTTTAGTGACC
1 TTTATATAATTTTGGTAACTTTTGAAATAATTTTA-TAAAC
*
1204 TTTATATAATTTTGGTAAC--TTCAATATTAA-TTTATAAAC
1 TTTATATAATTTTGGTAACTTTTGAA-A-TAATTTTATAAAC
* *
1243 TTTGATATAATTTTGATAACTTTTGATATAATTTTAATAAAC
1 TTT-ATATAATTTTGGTAACTTTTGAAATAATTTT-ATAAAC
* * * *
1285 TTAGATATAATTTTGTTAAACTTTAGAAATGATTTTGATAA
1 TT-TATATAATTTTGGT-AACTTTTGAAATAATTTT-ATAA
1326 TTGTTGATAT
Statistics
Matches: 101, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
39 10 0.10
40 23 0.23
41 26 0.26
42 23 0.23
43 19 0.19
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.48
Consensus pattern (40 bp):
TTTATATAATTTTGGTAACTTTTGAAATAATTTTATAAAC
Found at i:1263 original size:40 final size:42
Alignment explanation
Indices: 1166--1516 Score: 154
Period size: 42 Copynumber: 8.4 Consensus size: 42
1156 ATAGTTTTTT
* * * * *
1166 ATATAATTTTGGTAACTTTTGAA-ATAATTTTAGTGACCTTT-
1 ATATAATTTTGATAAC-TTTCAATATAATTTTAATAAACTTTG
*
1207 ATATAATTTTGGTAAC-TTCAATATTAA-TTT-ATAAACTTTG
1 ATATAATTTTGATAACTTTCAATA-TAATTTTAATAAACTTTG
** *
1247 ATATAATTTTGATAACTTTTGATATAATTTTAATAAACTTAG
1 ATATAATTTTGATAACTTTCAATATAATTTTAATAAACTTTG
* * * * *
1289 ATATAATTTTGTTAAACTTT-AGAAATGATTTTGAT-AATTGTTG
1 ATATAATTTTGAT-AACTTTCA-ATATAATTTTAATAAACT-TTG
* * *
1332 ATATGATTTTGACAACCTTTC-ATATAATTTTGAT-AACTTTGG
1 ATATAATTTTGATAA-CTTTCAATATAATTTTAATAAACTTT-G
* * * * *
1374 AT-TTATTATTGGTGATCTTTGAA-ATAATTTTAAT-AACATTTT
1 ATATAATT-TTGAT-AACTTTCAATATAATTTTAATAAAC-TTTG
* * * * * *
1416 ATATTATTTTGATAACCTTT-GATATTATTTTGATTGCAA-TTTA
1 ATATAATTTTGATAA-CTTTCAATATAATTTT-AAT-AAACTTTG
* * *** * * *
1459 ATGTGATTTTTCCAACTTTCAATGTAATTTTAGTAATCTTTG
1 ATATAATTTTGATAACTTTCAATATAATTTTAATAAACTTTG
*
1501 ATACAATTTTGATAAC
1 ATATAATTTTGATAAC
1517 ATCTATTATA
Statistics
Matches: 234, Mismatches: 52, Indels: 47
0.70 0.16 0.14
Matches are distributed among these distances:
39 10 0.04
40 22 0.09
41 36 0.15
42 99 0.42
43 65 0.28
45 2 0.01
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.49
Consensus pattern (42 bp):
ATATAATTTTGATAACTTTCAATATAATTTTAATAAACTTTG
Found at i:1268 original size:10 final size:11
Alignment explanation
Indices: 1243--1366 Score: 71
Period size: 11 Copynumber: 11.6 Consensus size: 11
1233 ATTTATAAAC
1243 TTTGATATAAT
1 TTTGATATAAT
*
1254 TTTGATA-ACT
1 TTTGATATAAT
1264 TTTGATATAAT
1 TTTGATATAAT
* *
1275 TTTAATA-AAC
1 TTTGATATAAT
*
1285 TTAGATATAAT
1 TTTGATATAAT
*
1296 TTTGTTA-AACT
1 TTTGATATAA-T
* * *
1307 TTAGAAATGAT
1 TTTGATATAAT
1318 TTTG--ATAAT
1 TTTGATATAAT
*
1327 TGTTGATATGAT
1 T-TTGATATAAT
* **
1339 TTTGACA-ACC
1 TTTGATATAAT
*
1349 TTTCATATAAT
1 TTTGATATAAT
1360 TTTGATA
1 TTTGATA
1367 ACTTTGGATT
Statistics
Matches: 80, Mismatches: 25, Indels: 16
0.66 0.21 0.13
Matches are distributed among these distances:
9 5 0.06
10 26 0.32
11 43 0.54
12 6 0.08
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (11 bp):
TTTGATATAAT
Found at i:1357 original size:64 final size:63
Alignment explanation
Indices: 1166--1372 Score: 162
Period size: 64 Copynumber: 3.3 Consensus size: 63
1156 ATAGTTTTTT
* * * ***
1166 ATATAATTTTGGT-AACTTTTGAAATAATTTT-AGTGACCTTT-ATATAATTTT-GGTAACTT-C
1 ATATAATTTTGATAAAC-TTTGAAATAATTTTGA-TAACTTTTGATATAATTTTAACAAACTTAC
* * *
1226 AATATTAA-TTT-ATAAACTTTGATATAATTTTGATAACTTTTGATATAATTTTAATAAACTTAG
1 -ATA-TAATTTTGATAAACTTTGAAATAATTTTGATAACTTTTGATATAATTTTAACAAACTTAC
* * * * * *
1289 ATATAATTTTGTTAAACTTTAGAAATGATTTTGATAA-TTGTTGATATGATTTTGACAACCTTTC
1 ATATAATTTTGATAAACTTT-GAAATAATTTTGATAACTT-TTGATATAATTTTAACAAACTTAC
1353 ATATAATTTTGAT-AACTTTG
1 ATATAATTTTGATAAACTTTG
1373 GATTTATTAT
Statistics
Matches: 118, Mismatches: 18, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
60 20 0.17
61 23 0.19
62 15 0.13
63 16 0.14
64 44 0.37
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.48
Consensus pattern (63 bp):
ATATAATTTTGATAAACTTTGAAATAATTTTGATAACTTTTGATATAATTTTAACAAACTTAC
Found at i:1448 original size:21 final size:21
Alignment explanation
Indices: 1166--1449 Score: 188
Period size: 21 Copynumber: 13.6 Consensus size: 21
1156 ATAGTTTTTT
* *
1166 ATATAATTTTGGTAACTTTTG
1 ATATAATTTTGATAACCTTTG
* *
1187 AAATAATTTT-AGTGACCTTT-
1 ATATAATTTTGA-TAACCTTTG
* **
1207 ATATAATTTTGGTAA-CTTCA
1 ATATAATTTTGATAACCTTTG
*
1227 ATATTAA-TTT-ATAAACTTTG
1 ATA-TAATTTTGATAACCTTTG
*
1247 ATATAATTTTGATAACTTTTG
1 ATATAATTTTGATAACCTTTG
* * *
1268 ATATAATTTTAATAAACTTAG
1 ATATAATTTTGATAACCTTTG
* *
1289 ATATAATTTTGTTAAACTTTAG
1 ATATAATTTTGATAACCTTT-G
* * *
1311 AAATGATTTTGATAA-TTGTTG
1 ATATAATTTTGATAACCT-TTG
* * *
1332 ATATGATTTTGACAACCTTTC
1 ATATAATTTTGATAACCTTTG
1353 ATATAATTTTGATAA-CTTTGG
1 ATATAATTTTGATAACCTTT-G
* * * *
1374 AT-TTATTATTGGTGATCTTTG
1 ATATAATT-TTGATAACCTTTG
* * * *
1395 AAATAATTTTAATAACATTTT
1 ATATAATTTTGATAACCTTTG
*
1416 ATATTATTTTGATAACCTTTG
1 ATATAATTTTGATAACCTTTG
*
1437 ATATTATTTTGAT
1 ATATAATTTTGAT
1450 TGCAATTTAA
Statistics
Matches: 202, Mismatches: 47, Indels: 28
0.73 0.17 0.10
Matches are distributed among these distances:
19 9 0.04
20 34 0.17
21 135 0.67
22 24 0.12
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.49
Consensus pattern (21 bp):
ATATAATTTTGATAACCTTTG
Found at i:1682 original size:21 final size:20
Alignment explanation
Indices: 1657--1724 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 20
1647 ACATAATTTT
*
1657 TATGAATTTGATAATCTTTGA
1 TATGAATTTCATAA-CTTTGA
*
1678 TATG-ATTTTAGTAACTATTGA
1 TATGAATTTCA-TAACT-TTGA
* *
1699 TATAAATTTCATAACCTTAGA
1 TATGAATTTCATAA-CTTTGA
1720 TATGA
1 TATGA
1725 TATGGTTGTC
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
20 7 0.18
21 24 0.63
22 7 0.18
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.44
Consensus pattern (20 bp):
TATGAATTTCATAACTTTGA
Found at i:1792 original size:21 final size:21
Alignment explanation
Indices: 1736--1880 Score: 120
Period size: 21 Copynumber: 6.9 Consensus size: 21
1726 ATGGTTGTCC
*
1736 TTTAATATAAATTTTGATGACT
1 TTTAATAT-AATTTTGATAACT
* * *
1758 TCT-ATAATAGTTTTGATAACG
1 TTTAAT-ATAATTTTGATAACT
1779 TTTAATATAATTTTGATAATCT
1 TTTAATATAATTTTGATAA-CT
*
1801 TTGTAAT-T-ATTTT-AGTAACC
1 TT-TAATATAATTTTGA-TAACT
*
1821 TTAAATATAATTTTGATAACTT
1 TTTAATATAATTTTGATAAC-T
* * *
1843 TTTAA-ATATTTTTGGTAAAT
1 TTTAATATAATTTTGATAACT
1863 TTTAATATAATTTTGATA
1 TTTAATATAATTTTGATA
1881 GTCTTGGATA
Statistics
Matches: 97, Mismatches: 16, Indels: 21
0.72 0.12 0.16
Matches are distributed among these distances:
19 3 0.03
20 11 0.11
21 64 0.66
22 15 0.15
23 4 0.04
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (21 bp):
TTTAATATAATTTTGATAACT
Found at i:1897 original size:84 final size:85
Alignment explanation
Indices: 1734--1898 Score: 201
Period size: 84 Copynumber: 2.0 Consensus size: 85
1724 ATATGGTTGT
* * *
1734 CCTTTAATATAAATTTTGATGACTTCTATAATAGTTTTGATAACGTTTAATATAATTTTGATAAT
1 CCTTAAATATAAATTTTGATAACTTCTATAATAGTTTTGATAAAGTTTAATATAATTTTGATAAT
* *
1799 CTTTGTAATTATTTTAGTAA
66 CTTGGTAATAATTTTAGTAA
* * * * *
1819 CCTTAAATAT-AATTTTGATAACTT-TTTAAATATTTTTGGTAAATTTTAATATAATTTTGATAG
1 CCTTAAATATAAATTTTGATAACTTCTAT-AATAGTTTTGATAAAGTTTAATATAATTTTGATAA
1882 TCTTGG-ATATAATTTTA
65 TCTTGGTA-ATAATTTTA
1899 ATAATCGTTA
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
83 3 0.04
84 56 0.82
85 9 0.13
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (85 bp):
CCTTAAATATAAATTTTGATAACTTCTATAATAGTTTTGATAAAGTTTAATATAATTTTGATAAT
CTTGGTAATAATTTTAGTAA
Found at i:1912 original size:21 final size:20
Alignment explanation
Indices: 1780--1912 Score: 61
Period size: 21 Copynumber: 6.3 Consensus size: 20
1770 TTGATAACGT
*
1780 TTAATATAATTTTGATAATC
1 TTAATATAATTTTAATAATC
** * * *
1800 TTTGTAATTATTTTAGTAACC
1 TTAAT-ATAATTTTAATAATC
* *
1821 TTAAATATAATTTTGATAACTTT
1 TT-AATATAATTTTAATAA--TC
* ** *
1844 TTAA-ATATTTTTGGTAAATT
1 TTAATATAATTTTAAT-AATC
* *
1864 TTAATATAATTTTGATAGTC
1 TTAATATAATTTTAATAATC
*
1884 TTGGATATAATTTTAATAATC
1 TT-AATATAATTTTAATAATC
1905 GTTAATAT
1 -TTAATAT
1913 TAGCTTGTCA
Statistics
Matches: 82, Mismatches: 23, Indels: 15
0.68 0.19 0.12
Matches are distributed among these distances:
20 13 0.16
21 60 0.73
22 7 0.09
23 2 0.02
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (20 bp):
TTAATATAATTTTAATAATC
Found at i:2009 original size:21 final size:21
Alignment explanation
Indices: 1975--2033 Score: 59
Period size: 22 Copynumber: 2.9 Consensus size: 21
1965 AATCTTGTAT
*
1975 TTAC-TTTGGTAAACTTTGAA
1 TTACTTTTAGTAAACTTTGAA
1995 TTACTTTTAGTAAACATTTGAA
1 TTACTTTTAGTAAAC-TTTGAA
* * *
2017 ATAATTCTAGT-AACTTT
1 TTACTTTTAGTAAACTTT
2034 AATATGATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 7 0.21
21 12 0.36
22 14 0.42
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (21 bp):
TTACTTTTAGTAAACTTTGAA
Found at i:2045 original size:20 final size:20
Alignment explanation
Indices: 2020--2062 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
2010 ATTTGAAATA
* *
2020 ATTCTAGTAACTTTAATATG
1 ATTCTAATAACTCTAATATG
*
2040 ATTCTAATAACTCTGATATG
1 ATTCTAATAACTCTAATATG
2060 ATT
1 ATT
2063 TTAAAAGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (20 bp):
ATTCTAATAACTCTAATATG
Found at i:2728 original size:3 final size:3
Alignment explanation
Indices: 2720--2760 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
2710 GAGAGAGAGT
2720 AAG AAG AAG AAG AAG AAG AAG -AG AAG AAG CAAG AAG -AG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG
2761 GACAAATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.11
3 28 0.80
4 3 0.09
ACGTcount: A:0.63, C:0.02, G:0.34, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:2740 original size:15 final size:15
Alignment explanation
Indices: 2706--2760 Score: 67
Period size: 15 Copynumber: 3.5 Consensus size: 15
2696 CGGCTAGAAA
*
2706 AAGAGAGAGAGAGTAAG
1 AAGAGA-AGA-AGCAAG
2723 AAGAAGAAGAAG-AAG
1 AAG-AGAAGAAGCAAG
2738 AAGAGAAGAAGCAAG
1 AAGAGAAGAAGCAAG
2753 AAGAGAAG
1 AAGAGAAG
2761 GACAAATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
14 8 0.22
15 17 0.47
16 2 0.06
17 6 0.17
18 3 0.08
ACGTcount: A:0.60, C:0.02, G:0.36, T:0.02
Consensus pattern (15 bp):
AAGAGAAGAAGCAAG
Found at i:2846 original size:15 final size:15
Alignment explanation
Indices: 2828--2860 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
2818 TTTTTCTTTT
*
2828 ATAATTAAAAGAAAA
1 ATAAATAAAAGAAAA
2843 ATAAATAAAAGAAAA
1 ATAAATAAAAGAAAA
2858 ATA
1 ATA
2861 TAAAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (15 bp):
ATAAATAAAAGAAAA
Found at i:3771 original size:34 final size:35
Alignment explanation
Indices: 3732--3798 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
3722 CCTTACAACA
3732 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
3766 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
3799 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:4264 original size:20 final size:21
Alignment explanation
Indices: 4239--4295 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 21
4229 TACAAGCCAA
4239 TGTATCGATACAAGTTTTTG-
1 TGTATCGATACAAGTTTTTGC
* **
4259 TGTATCGATACCAGTACTTGC
1 TGTATCGATACAAGTTTTTGC
4280 TGTATC-ATACAAGTTT
1 TGTATCGATACAAGTTT
4296 GGCTACTGCC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 24 0.80
21 6 0.20
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (21 bp):
TGTATCGATACAAGTTTTTGC
Found at i:7223 original size:84 final size:84
Alignment explanation
Indices: 7068--7232 Score: 201
Period size: 84 Copynumber: 2.0 Consensus size: 84
7058 CATTTTCCAC
* * * *
7068 TTGCAACTCATTTCTTTTCTCCTCTAATTCATTTATTTTCTTTTTAAAAGAATTATTTTCTAAAC
1 TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
7133 TCATTGATTTACTTTCATT
66 TCATTGATTTACTTTCATT
* *
7152 TTGCAACTC-TTTCATATTCTTCTCTAATTCACTTAATTTC-TTTT-CAAGAATATCATTCTCTA
1 TTGCAACTCATTTC-TATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAAT-T-ATTCTCTA
* * *
7214 CACTTATTGATTTATTTTC
63 AACTCATTGATTTACTTTC
7233 TTCTTTGAGT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
82 6 0.09
83 9 0.13
84 54 0.78
ACGTcount: A:0.25, C:0.19, G:0.04, T:0.52
Consensus pattern (84 bp):
TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
TCATTGATTTACTTTCATT
Found at i:8792 original size:34 final size:35
Alignment explanation
Indices: 8754--8820 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
8744 CCTTACAACA
8754 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
8788 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
8821 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:9185 original size:19 final size:19
Alignment explanation
Indices: 9161--9199 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
9151 TTTCGTGTGA
*
9161 ATGTATCGATACATTTTTG
1 ATGTATCGATACATATTTG
9180 ATGTATCGATACATATTTG
1 ATGTATCGATACATATTTG
9199 A
1 A
9200 AAATATAGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (19 bp):
ATGTATCGATACATATTTG
Found at i:9270 original size:13 final size:13
Alignment explanation
Indices: 9252--9277 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9242 CAATTTTTTG
9252 TGTATCGATACAT
1 TGTATCGATACAT
9265 TGTATCGATACAT
1 TGTATCGATACAT
9278 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:16241 original size:13 final size:13
Alignment explanation
Indices: 16223--16248 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16213 ACAAAGATCC
16223 ATGTATCGATACA
1 ATGTATCGATACA
16236 ATGTATCGATACA
1 ATGTATCGATACA
16249 CTGAATAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:16326 original size:19 final size:19
Alignment explanation
Indices: 16302--16382 Score: 75
Period size: 19 Copynumber: 4.5 Consensus size: 19
16292 CGATACATTA
16302 TATCGATACAATACTTATG
1 TATCGATACAATACTTATG
16321 TATCGATAC---A--T-TG
1 TATCGATACAATACTTATG
*
16334 TATCGATACAACACTTATG
1 TATCGATACAATACTTATG
* *
16353 TATCGATACAGTTACTATTTG
1 TATCGATACA-ATACT-TATG
16374 TATCGATAC
1 TATCGATAC
16383 TAATTGTTGA
Statistics
Matches: 51, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
13 11 0.22
14 1 0.02
16 2 0.04
18 1 0.02
19 21 0.41
20 3 0.06
21 12 0.24
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.37
Consensus pattern (19 bp):
TATCGATACAATACTTATG
Found at i:16328 original size:32 final size:32
Alignment explanation
Indices: 16287--16362 Score: 125
Period size: 32 Copynumber: 2.4 Consensus size: 32
16277 GCAGTAGCTT
* *
16287 TGTAGCGATACATTATATCGATACAATACTTA
1 TGTATCGATACATTATATCGATACAACACTTA
*
16319 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTATATCGATACAACACTTA
16351 TGTATCGATACA
1 TGTATCGATACA
16363 GTTACTATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATTATATCGATACAACACTTA
Found at i:17299 original size:49 final size:49
Alignment explanation
Indices: 17139--17700 Score: 506
Period size: 49 Copynumber: 11.7 Consensus size: 49
17129 AAAAAAATGA
* * * * *
17139 CAATGTGCTGATTCATGGCCAGCGACATTAGACTTGAAGA-AGAA--TGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATA-AAGGTGC
* ** * * * * * *
17186 CAATGTGCTGAGACAAGGCCAGTGACATTGGGCTTAGGATTGTTAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTA--A-AGATAAAGGTGC
* * ** *
17238 CAATATGCTGATTCGAGGCCAACGATATCAGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGC
* * * *
17287 CAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGC
* * * * *
17336 CAATATGCCGATTCAAGGCTAGCGATATTAGACTTAAAGGTGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGC
* * * * *
17385 CAATGTGCTGATTTAAGGCCAGCGACATTGGTCTTAAAGACAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGC
17434 CAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGC
* * * * * *
17477 CAATGTGCTGATTCAAGGCTAGCAACATTGGTCTTAAAGACAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGC
* *
17526 CAATATGCTGATTCAAGGCTAGCGATATTAGAC-T-----TAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGC
* * * * *
17569 CAATTTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGATGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGC
* * * *
17618 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAGATGAGGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATAAAGGTGC
* *
17668 CAATATGCTAATTCAAGGCCAGCAATATTGGAC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGAC
17701 ATGTGCCAAT
Statistics
Matches: 415, Mismatches: 81, Indels: 35
0.78 0.15 0.07
Matches are distributed among these distances:
43 72 0.17
44 2 0.00
47 29 0.07
48 2 0.00
49 234 0.56
50 46 0.11
51 1 0.00
52 29 0.07
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGC
Found at i:17363 original size:98 final size:98
Alignment explanation
Indices: 17139--17690 Score: 655
Period size: 92 Copynumber: 5.7 Consensus size: 98
17129 AAAAAAATGA
* * * * * **
17139 CAATGTGCTGATTCATGGCCAGCGACATTAGACTTGAAGAAGAA--TGCCAATGTGCTGAGACAA
1 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * * * *
17202 GGCCAGTGACATTGGGCTTAGGATTGTTAAAGATGC
66 GGCCAGCGACATTGGTCTTA--A-AGATAAAGGTGC
* * * *
17238 CAATATGCTGATTCGAGGCCAACGATATCAGACTTAAAGATGAAGGTGCCAATGTGTTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
17303 GGCCAGCGACATTGGTCTTAAAGATAAAGGTGC
66 GGCCAGCGACATTGGTCTTAAAGATAAAGGTGC
* * * *
17336 CAATATGCCGATTCAAGGCTAGCGATATTAGACTTAAAGGTGAAGGTGCCAATGTGCTGATTTAA
1 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
*
17401 GGCCAGCGACATTGGTCTTAAAGACAAAGGTGC
66 GGCCAGCGACATTGGTCTTAAAGATAAAGGTGC
*
17434 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * *
17493 GGCTAGCAACATTGGTCTTAAAGACAAAGGTGC
66 GGCCAGCGACATTGGTCTTAAAGATAAAGGTGC
* *
17526 CAATATGCTGATTCAAGGCTAGCGATATTAGACTT----A--AAGGTGCCAATTTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* *
17585 GGCCAGCGACATTGGTCTTAAAGATGATGGTGC
66 GGCCAGCGACATTGGTCTTAAAGATAAAGGTGC
* * * * * *
17618 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAGATGAGGGTGCCAATATGCTAATTCA
1 CAATATGCTGATTCAAGGCCAGCGATATTAGACTT-AAAGATGAAGGTGCCAATGTGCTGATTCA
17683 AGGCCAGC
65 AGGCCAGC
17691 AATATTGGAC
Statistics
Matches: 397, Mismatches: 47, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
92 168 0.42
97 1 0.00
98 130 0.33
99 64 0.16
101 34 0.09
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (98 bp):
CAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
GGCCAGCGACATTGGTCTTAAAGATAAAGGTGC
Found at i:17783 original size:32 final size:33
Alignment explanation
Indices: 17741--17807 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 33
17731 ACATTGGTCT
*
17741 GAGAAGGGTTGCCACCGACTTGTGT-GGCTTTA
1 GAGAAGGGTTGCCACCGACTTGTATGGGCTTTA
*
17773 GAGAATGGTTGCCACCGACTTGTATGGGCTTTA
1 GAGAAGGGTTGCCACCGACTTGTATGGGCTTTA
17806 GA
1 GA
17808 AGGGGGTGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 23 0.72
33 9 0.28
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (33 bp):
GAGAAGGGTTGCCACCGACTTGTATGGGCTTTA
Found at i:17981 original size:27 final size:27
Alignment explanation
Indices: 17940--18243 Score: 153
Period size: 27 Copynumber: 10.2 Consensus size: 27
17930 GCTTAAATGG
*
17940 AAAAGGAGTGGCACGGAGTTGTAGG-CTT
1 AAAA-GAGTGCCACGGAGTTGT-GGACTT
*
17968 AAAAGAGTGCCACGAAGTTGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGACTT
* *
17995 AAAAGGAAAAAGAGGGCCATGGAGTTGTGGACTT
1 -------AAAAGAGTGCCACGGAGTTGTGGACTT
* *
18029 AAAAGGGTGCCACGGAGTTGTTGACTT
1 AAAAGAGTGCCACGGAGTTGTGGACTT
*
18056 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGACTT
* *
18083 AAAGGAAAAAGAGTGCCACGGAGTTATGGGCTT
1 ------AAAAGAGTGCCACGGAGTTGTGGACTT
* *
18116 AAAAAGAAAAAGTGCCACGAAGTCGTGGACTT
1 -AAAAG----AGTGCCACGGAGTTGTGGACTT
* **
18148 AGAAAAGAGATGCCACTGAGTCATGGACTTT
1 --AAAAGAG-TGCCACGGAGTTGTGGAC-TT
* **
18179 GGGAAAGAGATGCCATTGAGTTGTGGAC-T
1 --AAAAGAG-TGCCACGGAGTTGTGGACTT
*
18208 AGGGAAAGAGATGCCACTGAGTTGTGGACTT
1 A---AAAGAG-TGCCACGGAGTTGTGGACTT
18239 AAAAG
1 AAAAG
18244 GAAAAAGAAT
Statistics
Matches: 223, Mismatches: 28, Indels: 50
0.74 0.09 0.17
Matches are distributed among these distances:
26 2 0.01
27 67 0.30
28 14 0.06
29 3 0.01
30 39 0.17
31 27 0.12
32 18 0.08
33 29 0.13
34 24 0.11
ACGTcount: A:0.34, C:0.13, G:0.33, T:0.21
Consensus pattern (27 bp):
AAAAGAGTGCCACGGAGTTGTGGACTT
Found at i:17996 original size:61 final size:61
Alignment explanation
Indices: 17925--18277 Score: 191
Period size: 61 Copynumber: 5.8 Consensus size: 61
17915 GCTAAGGAGG
* * *
17925 TGTGGGCTTAAATGGAAAAGGAGTGG-CACGGAGTTGTAGG-CTTAAAAGAGTGCCACGAAGT
1 TGTGGACTTAAAAGGAAAAAGAG-GGCCACGGAGTTGT-GGACTTAAAAGAGTGCCACGAAGT
* * *
17986 TGTGGACTTAAAAGGAAAAAGAGGGCCATGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGAAAAAGAGGGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGAAGT
* * *
18047 TGTTGACTTAAAA-G-----G-GTGCCACGGAGTTGTGGACTTAAAGGAAAAAGAGTGCCACGGA
1 TGTGGACTTAAAAGGAAAAAGAGGGCCACGGAGTTGTGGACTT------AAAAGAGTGCCACGAA
18105 GT
60 GT
* * * * * *
18107 TATGGGCTTAAAAAG-AAAA-AGTGCCACGAAGTCGTGGACTTAGAAAAGAGATGCCACTG-AGT
1 TGTGGACTTAAAAGGAAAAAGAGGGCCACGGAGTTGTGGACTT--AAAAGAG-TGCCAC-GAAGT
** ** * * **
18169 CATGGACTT--TGGGAAAGAGA-TGCCATTGAGTTGTGGAC-TAGGGAAAGAGATGCCACTG-AG
1 TGTGGACTTAAAAGGAAAAAGAGGGCCACGGAGTTGTGGACTTA---AAAGAG-TGCCAC-GAAG
18229 T
61 T
** * *
18230 TGTGGACTTAAAAGGAAAAAGAATGCCATGGAGTTGTGGACCTAAAAG
1 TGTGGACTTAAAAGGAAAAAGAGGGCCACGGAGTTGTGGACTTAAAAG
18278 GAAAAAGTGC
Statistics
Matches: 234, Mismatches: 33, Indels: 49
0.74 0.10 0.16
Matches are distributed among these distances:
54 19 0.08
55 1 0.00
58 1 0.00
60 34 0.15
61 111 0.47
62 21 0.09
63 9 0.04
64 17 0.07
65 21 0.09
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.21
Consensus pattern (61 bp):
TGTGGACTTAAAAGGAAAAAGAGGGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGAAGT
Found at i:18021 original size:34 final size:34
Alignment explanation
Indices: 17968--18304 Score: 223
Period size: 34 Copynumber: 10.8 Consensus size: 34
17958 TTGTAGGCTT
*
17968 AAAAGAGTGCCACGAAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
18002 AAAAGAGGGCCATGGAGTTGTGGACTTAAAA-G-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
*
18034 ----G-GTGCCACGGAGTTGTTGACTTAAAA-G-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
18061 ----G-GTGCCACGGAGTTGTGGACTT-AAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * *
18089 AAAAGAGTGCCACGGAGTTATGGGCTTAAAAAG-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
18122 AAAA-AGTGCCACGAAGTCGTGGACTT---A-G-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* ** **
18150 AAAAGAGATGCCACTGAGTCATGGACTT--TGGGA
1 AAAAGAG-TGCCACGGAGTTGTGGACTTAAAAGGA
* ** *
18183 AAGAGA-TGCCATTGAGTTGTGGAC-T--AGGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
18213 AAGAGA-TGCCACTGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * *
18246 AAAAGAATGCCATGGAGTTGTGGACCTAAAAGG-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
**
18279 AAAA-AGTGCCACGGAGTCATGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGACTT
18305 TTGGAAAAGA
Statistics
Matches: 252, Mismatches: 34, Indels: 36
0.78 0.11 0.11
Matches are distributed among these distances:
26 3 0.01
27 45 0.18
28 6 0.02
29 3 0.01
30 45 0.18
31 16 0.06
32 37 0.15
33 42 0.17
34 55 0.22
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (34 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
Found at i:18121 original size:88 final size:89
Alignment explanation
Indices: 17940--18119 Score: 265
Period size: 88 Copynumber: 2.0 Consensus size: 89
17930 GCTTAAATGG
* *
17940 AAAAGGAGTGGCACGGAGTTGTAGGCTTAAAAGAGTGCCACGAAGTTGTGGACTTAAAAGGAAAA
1 AAAAGGAGTGCCACGGAGTTGTAGACTTAAAAGAGTGCCACGAAGTTGTGGACTTAAAAGGAAAA
* *
18005 AGAGGGCCATGGAGTTGTGGACTT
66 AGAGGGCCACGGAGTTATGGACTT
* * *
18029 AAAAGG-GTGCCACGGAGTTGTTGACTTAAAAGGGTGCCACGGAGTTGTGGACTT-AAAGGAAAA
1 AAAAGGAGTGCCACGGAGTTGTAGACTTAAAAGAGTGCCACGAAGTTGTGGACTTAAAAGGAAAA
* *
18092 AGAGTGCCACGGAGTTATGGGCTT
66 AGAGGGCCACGGAGTTATGGACTT
18116 AAAA
1 AAAA
18120 AGAAAAAGTG
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
87 33 0.40
88 43 0.52
89 6 0.07
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (89 bp):
AAAAGGAGTGCCACGGAGTTGTAGACTTAAAAGAGTGCCACGAAGTTGTGGACTTAAAAGGAAAA
AGAGGGCCACGGAGTTATGGACTT
Found at i:18347 original size:34 final size:33
Alignment explanation
Indices: 18309--19159 Score: 547
Period size: 32 Copynumber: 26.9 Consensus size: 33
18299 GGACTTTTGG
* *
18309 AAAAGATGCTACTAAGTCATGGATTTTTGAAGAA
1 AAAAGATGCCACTAAGTCATGGA-CTTTGAAGAA
* *
18343 AAAAGATGCCATTGAGTCATGGACTTTGAAG--
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * * *
18374 AAATGATGCCACTGAGTCGTTGAC-TT--AGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * *
18404 AAAAGATGCCGCTGAGTCGTGGACTTTG--GAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * * *
18435 AAGAGATGCCACTGAGTCGTGGACTTTG--GGA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * ** *
18466 AAGAGATGCCACTGAGTTGTGGAC-TTG--GGA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* ** ** *
18496 AAGAGATGCCACTAAGTTGTGGA-AATG-GGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * ** *
18527 AGAA-ATGCCACTGAGTTGTGGACTTGGAA-AA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * *
18558 AAAGGATGCCACTGAGTCGTGGAC-TT--AGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * **
18588 AAGAGATGCCACTGAGTTGTGGACTTTGAAGAAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAG-AA
** * *
18622 AAAAGATGCCACTGTGTCGTGGACTTGGAAG-A
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * *
18654 AAAAGATGCCACTGAGTCGTGGACTTGGAAG-A
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* **
18686 AAAGGATGCCACTAAGTTGTGGACTTTGAAGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
** *
18719 AAAAGATGCCACTGTGTCGTGGAC-TT--AGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * ** *
18749 AAGAGATGCCACTGAGTTGTGGACTTT---GCA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * **
18779 AAGAGATGCCACTGAGTTGTGGACTTTGAAGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
** * *
18812 AAAAGATGCCACTGTGTCATAGACTTGGAAG-A
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* **
18844 AAAAGATGCCACTGAGTTGTGGACTTTGAAGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
** * *
18877 AAAAGATGCCACTGTGTCATAGACTTGGAAG-A
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * *
18909 AAAAGATGCCACTGAGTCGTGGACTTGGAAGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * * **
18942 AAGA-ATGCCAATGAGTTGTGGACTTTGAAGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
** * *
18974 AAAAGATGCCACTGTGTCGTGGACTTAGAAG-A
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* *
19006 AAAAGATGCCACTGAGTCATGGACTTGGAAG-A
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
*
19038 AAAGGATGCCACTAAGTCATGGAC-TT--AGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * **
19068 AAGAGATGCCACTTAGTTGTGGACTTTGAAG-A
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* * * *
19100 AAAGGATGCCACTGAGACGTGGAC-TT--AGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
* *
19130 AATAGATGCCACTAAGTTATGGACTTTGAA
1 AAAAGATGCCACTAAGTCATGGACTTTGAA
19160 AAGAGATTTG
Statistics
Matches: 687, Mismatches: 100, Indels: 61
0.81 0.12 0.07
Matches are distributed among these distances:
28 2 0.00
29 5 0.01
30 186 0.27
31 97 0.14
32 235 0.34
33 113 0.16
34 49 0.07
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (33 bp):
AAAAGATGCCACTAAGTCATGGACTTTGAAGAA
Found at i:18568 original size:32 final size:31
Alignment explanation
Indices: 18122--19161 Score: 788
Period size: 30 Copynumber: 33.1 Consensus size: 31
18112 GCTTAAAAAG
*
18122 AAAAAG-TGCCAC-GAAGTCGTGGACTTAG-A
1 AAAAAGATGCCACTG-AGTCGTGGACTTGGAA
* * *
18151 AAAGAGATGCCACTGAGTCATGGACTTTGG-G
1 AAAAAGATGCCACTGAGTCGTGGAC-TTGGAA
* * * * *
18182 AAAGAGATGCCATTGAGTTGTGGACTAGG-G
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * **
18212 AAAGAGATGCCACTGAGTTGTGGACTTAAAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * **
18243 GGAAAAAGAATGCCA-TGGAGTTGTGGACCTAAAA
1 --AAAAAG-ATGCCACT-GAGTCGTGGACTTGGAA
* *
18277 GGAAAAAG-TGCCACGGAGTCATGGACTTTTGG--
1 --AAAAAGATGCCACTGAGTCGTGGAC--TTGGAA
* * * * *
18309 -AAAAGATGCTACTAAGTCATGGATTTTTGAAGA
1 AAAAAGATGCCACTGAGTCGTGGA--CTTGGA-A
* * *
18342 AAAAAGATGCCATTGAGTCATGGACTTTGAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * * *
18373 GAAATGATGCCACTGAGTCGTTGACTTAG-A
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
*
18403 AAAAAGATGCCGCTGAGTCGTGGACTTTGG-A
1 AAAAAGATGCCACTGAGTCGTGGAC-TTGGAA
* *
18434 AAAGAGATGCCACTGAGTCGTGGACTTTGG-G
1 AAAAAGATGCCACTGAGTCGTGGAC-TTGGAA
* * *
18465 AAAGAGATGCCACTGAGTTGTGGACTTGG-G
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * * ** *
18495 AAAGAGATGCCACTAAGTTGTGGAAATGGGA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* *
18526 AAGAA-ATGCCACTGAGTTGTGGACTTGGAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
*
18556 AAAAAGGATGCCACTGAGTCGTGGACTTAG-A
1 AAAAA-GATGCCACTGAGTCGTGGACTTGGAA
* *
18587 AAAGAGATGCCACTGAGTTGTGGACTTTGAAGAA
1 AAAAAGATGCCACTGAGTCGTGGAC-TTG--GAA
*
18621 AAAAAGATGCCACTGTGTCGTGGACTTGGAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
18652 GAAAAAGATGCCACTGAGTCGTGGACTTGGAA
1 -AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * * *
18684 GAAAAGGATGCCACTAAGTTGTGGACTTTGAAGA
1 -AAAAAGATGCCACTGAGTCGTGGAC-TTGGA-A
* *
18718 AAAAAGATGCCACTGTGTCGTGGACTTAG-A
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * * *
18748 AAAGAGATGCCACTGAGTTGTGGACTTTG-C
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * *
18778 AAAGAGATGCCACTGAGTTGTGGACTTTGAAGA
1 AAAAAGATGCCACTGAGTCGTGGAC-TTGGA-A
* * *
18811 AAAAAGATGCCACTGTGTCATAGACTTGGAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* *
18842 GAAAAAGATGCCACTGAGTTGTGGACTTTGAAGA
1 -AAAAAGATGCCACTGAGTCGTGGAC-TTGGA-A
* * *
18876 AAAAAGATGCCACTGTGTCATAGACTTGGAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
18907 GAAAAAGATGCCACTGAGTCGTGGACTTGGAA
1 -AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * * *
18939 GAAAAGAATGCCAATGAGTTGTGGACTTTGAAGA
1 AAAAAG-ATGCCACTGAGTCGTGGAC-TTGGA-A
* *
18973 AAAAAGATGCCACTGTGTCGTGGACTTAGAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
*
19004 GAAAAAGATGCCACTGAGTCATGGACTTGGAA
1 -AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * * *
19036 GAAAAGGATGCCACTAAGTCATGGACTTAG-A
1 -AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * * *
19067 AAAGAGATGCCACTTAGTTGTGGACTTTGAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * *
19098 GAAAAGGATGCCACTGAGACGTGGACTTAG-A
1 -AAAAAGATGCCACTGAGTCGTGGACTTGGAA
* * ** *
19129 AAATAGATGCCACTAAGTTATGGACTTTGAA
1 AAAAAGATGCCACTGAGTCGTGGACTTGGAA
19160 AA
1 AA
19162 GAGATTTGGA
Statistics
Matches: 829, Mismatches: 139, Indels: 84
0.79 0.13 0.08
Matches are distributed among these distances:
29 10 0.01
30 254 0.31
31 135 0.16
32 248 0.30
33 100 0.12
34 82 0.10
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.23
Consensus pattern (31 bp):
AAAAAGATGCCACTGAGTCGTGGACTTGGAA
Found at i:18887 original size:191 final size:189
Alignment explanation
Indices: 18063--19166 Score: 1039
Period size: 191 Copynumber: 5.8 Consensus size: 189
18053 CTTAAAAGGG
* * * * * * * *
18063 TGCCACGGAGTTGTGGACTT-AAAGGAAAAAGAGTGCCACGGAGTTATGGGCTT-AAAAAGAAAA
1 TGCCACTGAGTCGTGGACTTGGAA-GAAAAAGA-TGCCACTGAGTCATGGACTTGAGAAA-AAAG
* * * * *
18126 AGTGCCACGAAGTCGTGGAC-TT--AGAAAAGAGATGCCACTGAGTCATGGACTTTGGGAAAGAG
63 A-TGCCACTAAGTCGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCGTGGAC-TTAGAAAAGAG
* ** * ** *
18188 ATGCCATTGAGTTGTGGACTAGGGAAAGAGATGCCACTGAGTTGTGGACTTAAAAGGAAAAAGAA
126 ATGCCACTGAGTTGTGGACTTTGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAAAAAG-A
* * ** * ** *
18253 TGCCA-TGGAGTTGTGGACCTAAAAGGAAAAAG-TGCCACGGAGTCATGGACTTTTG-GAAAAGA
1 TGCCACT-GAGTCGTGGACTTGGAA-GAAAAAGATGCCACTGAGTCATGGACTTGAGAAAAAAGA
* * * * * *
18315 TGCTACTAAGTCATGGATTTTTGAAGAAAAAAGATGCCATTGAGTCATGGACTTTGAAGAA-ATG
64 TGCCACTAAGTCGTGGA-CTTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTTAGAA-AAGA-G
* * * * * * *
18379 ATGCCACTGAGTCGTTGACTTAGAAAAAAGATGCCGCTGAGTCGTGGACTTTG--GAAAAGAGA
126 ATGCCACTGAGTTGTGGACTTTGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAAAAAGA
* ** * *
18441 TGCCACTGAGTCGTGGACTTTGG--GAAAGAGATGCCACTGAGTTGTGGACTTG-GGAAAGAGAT
1 TGCCACTGAGTCGTGGAC-TTGGAAGAAAAAGATGCCACTGAGTCATGGACTTGAGAAAAAAGAT
* ** * * * * *
18503 GCCACTAAGTTGTGGA-AATG-GGAAAGAA-ATGCCACTGAGTTGTGGACTTGGAAAAAAAGGAT
65 GCCACTAAGTCGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTTAG-AAAAGA-GAT
* *
18565 GCCACTGAGTCGTGGACTTAGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAAAAAAGA
128 GCCACTGAGTTGTGGACTTTGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAG-AAAAAAGA
* *
18628 TGCCACTGTGTCGTGGACTTGGAAGAAAAAGATGCCACTGAGTCGTGGACTTG-GAAGAAAAGGA
1 TGCCACTGAGTCGTGGACTTGGAAGAAAAAGATGCCACTGAGTCATGGACTTGAGAA-AAAA-GA
* *
18692 TGCCACTAAGTTGTGGACTTTGAAGAAAAAAGATGCCACTGTGTCGTGGACTTAGAAAAGAGATG
64 TGCCACTAAGTCGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTTAGAAAAGAGATG
*
18757 CCACTGAGTTGTGGACTTTGCAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAAAAAGA
129 CCACTGAGTTGTGGACTTTGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAAAAAGA
* * * **
18818 TGCCACTGTGTCATAGACTTGGAAGAAAAAGATGCCACTGAGTTGTGGACTTTGAAGAAAAAAGA
1 TGCCACTGAGTCGTGGACTTGGAAGAAAAAGATGCCACTGAGTCATGGAC-TTG-AGAAAAAAGA
** * * *
18883 TGCCACTGTGTCATAGACTTGGAAG-AAAAAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGA-
64 TGCCACTAAGTCGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTT---AGAAAAGAG
* * * * *
18946 ATGCCAATGAGTTGTGGACTTTGAAGAAAAAAGATGCCACTGTGTCGTGGACTTAGAAG-AAAAA
126 ATGCCACTGAGTTGTGGACTTT---GAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAAAAA
19010 GA
188 GA
* * * *
19012 TGCCACTGAGTCATGGACTTGGAAGAAAAGGATGCCACTAAGTCATGGACTT-AGAAAAGAGATG
1 TGCCACTGAGTCGTGGACTTGGAAGAAAAAGATGCCACTGAGTCATGGACTTGAGAAAAAAGATG
* * * * *
19076 CCACTTAGTTGTGGACTTTGAAG-AAAAGGATGCCACTGAGACGTGGACTTAGAAAATAGATGCC
66 CCACTAAGTCGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTTAGAAAAGAGATGCC
* *
19140 ACTAAGTTATGGACTTTGAAAAGAGAT
131 ACTGAGTTGTGGACTTTGAAAAGAGAT
19167 TTGGAGAATT
Statistics
Matches: 770, Mismatches: 109, Indels: 74
0.81 0.11 0.08
Matches are distributed among these distances:
183 21 0.03
184 59 0.08
185 2 0.00
186 21 0.03
187 74 0.10
188 56 0.07
189 51 0.07
190 122 0.16
191 215 0.28
192 36 0.05
193 33 0.04
194 51 0.07
195 29 0.04
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (189 bp):
TGCCACTGAGTCGTGGACTTGGAAGAAAAAGATGCCACTGAGTCATGGACTTGAGAAAAAAGATG
CCACTAAGTCGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTTAGAAAAGAGATGCC
ACTGAGTTGTGGACTTTGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAAAAAGA
Found at i:20446 original size:1 final size:1
Alignment explanation
Indices: 20440--20521 Score: 74
Period size: 1 Copynumber: 82.0 Consensus size: 1
20430 GCACTCTCTC
* * * * * * * *
20440 TTTTTTTTTGTTTTGTTTTGTTTTTTTTTTGTTTTTTGTTTTTTTTTTTTTGTTTTGTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
20505 TTTGTTTTTTGTTTTTT
1 TTTTTTTTTTTTTTTTT
20522 GTTTGTGTGT
Statistics
Matches: 61, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (1 bp):
T
Found at i:20453 original size:5 final size:5
Alignment explanation
Indices: 20440--20519 Score: 82
Period size: 5 Copynumber: 16.8 Consensus size: 5
20430 GCACTCTCTC
* *
20440 TTTTT TTTTG TTTTG TTTTG TTTT- TTTT- TTGTT- TTTTG TTTT- TTTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TT-TTG TTTTG TTTTG TTTTG
20487 TTTTG TTTTG TTTTG TTTT- TTGTT- TTTTG TTTT
1 TTTTG TTTTG TTTTG TTTTG TT-TTG TTTTG TTTT
20520 TTGTTTGTGT
Statistics
Matches: 68, Mismatches: 2, Indels: 10
0.85 0.03 0.12
Matches are distributed among these distances:
4 16 0.24
5 52 0.76
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (5 bp):
TTTTG
Found at i:20465 original size:7 final size:7
Alignment explanation
Indices: 20443--20525 Score: 98
Period size: 7 Copynumber: 11.4 Consensus size: 7
20433 CTCTCTCTTT
20443 TTTTTTG
1 TTTTTTG
20450 TTTTGTT-
1 TTTT-TTG
20457 TTGTTTT-
1 TT-TTTTG
20464 TTTTTTG
1 TTTTTTG
20471 TTTTTTG
1 TTTTTTG
*
20478 TTTTTTT
1 TTTTTTG
20485 TTTTTTG
1 TTTTTTG
20492 TTTTGTTTTG
1 --TT-TTTTG
20502 TTTTTTG
1 TTTTTTG
20509 TTTTTTG
1 TTTTTTG
20516 TTTTTTG
1 TTTTTTG
20523 TTT
1 TTT
20526 GTGTGTTTAC
Statistics
Matches: 68, Mismatches: 2, Indels: 12
0.83 0.02 0.15
Matches are distributed among these distances:
6 4 0.06
7 51 0.75
8 6 0.09
9 2 0.03
10 5 0.07
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (7 bp):
TTTTTTG
Found at i:20487 original size:42 final size:44
Alignment explanation
Indices: 20440--20525 Score: 149
Period size: 42 Copynumber: 2.0 Consensus size: 44
20430 GCACTCTCTC
20440 TTTTTTTTTGTTTTGTTTTG-TTTT-TTTTTTGTTTTTTGTTTT
1 TTTTTTTTTGTTTTGTTTTGTTTTTGTTTTTTGTTTTTTGTTTT
20482 TTTTTTTTTGTTTTGTTTTGTTTTTTGTTTTTTGTTTTTTGTTT
1 TTTTTTTTTGTTTTGTTTTG-TTTTTGTTTTTTGTTTTTTGTTT
20526 GTGTGTTTAC
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
42 20 0.49
44 4 0.10
45 17 0.41
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (44 bp):
TTTTTTTTTGTTTTGTTTTGTTTTTGTTTTTTGTTTTTTGTTTT
Found at i:20520 original size:31 final size:30
Alignment explanation
Indices: 20440--20525 Score: 120
Period size: 31 Copynumber: 2.8 Consensus size: 30
20430 GCACTCTCTC
*
20440 TTTTTTTTTGTTTTGTTTTGTT-TTTTTTTTG
1 TTTTTTGTT-TTTTGTTTT-TTGTTTTTTTTG
*
20471 TTTTTTGTTTTTTTTTTTTTGTTTTGTTTTG
1 TTTTTTGTTTTTTGTTTTTTGTTTT-TTTTG
20502 TTTTTTGTTTTTTGTTTTTTGTTT
1 TTTTTTGTTTTTTGTTTTTTGTTT
20526 GTGTGTTTAC
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
29 2 0.04
30 12 0.24
31 36 0.72
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (30 bp):
TTTTTTGTTTTTTGTTTTTTGTTTTTTTTG
Done.