genome.fa.s702.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold702
Parameters: 2 7 7 80 10 50 1000
Length:  260314

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51--1182	478	2.4	475	87	2	1577	36	14	19	29	1.91
315--2058	876	2.0	878	88	0	2567	36	15	19	29	1.92
1194--3203	476	4.2	476	88	1	2943	36	15	19	29	1.92
3958--3983	13	2.0	13	100	0	52	30	15	15	38	1.88
4022--4097	21	3.7	21	80	3	100	28	17	11	42	1.84
4043--4115	20	3.6	20	81	3	101	31	19	13	35	1.91
4022--4115	41	2.3	41	98	0	179	29	18	12	39	1.88
4701--4769	36	1.9	36	100	0	138	14	37	5	42	1.70
4771--4840	34	2.1	34	100	0	140	40	25	2	31	1.70
6628--6666	13	3.0	13	96	0	69	35	15	17	30	1.91
6652--6730	20	3.7	20	70	20	70	45	16	12	25	1.82
8745--8775	15	2.1	15	93	0	53	12	22	16	48	1.80
12837--12862	13	2.0	13	100	0	52	30	15	15	38	1.88
12901--12976	21	3.7	21	80	3	100	28	17	11	42	1.84
12922--12994	20	3.6	20	81	3	101	31	19	13	35	1.91
12901--12994	41	2.3	41	98	0	179	29	18	12	39	1.88
13289--17345	476	8.6	476	89	1	6006	36	14	18	29	1.91
13292--17345	945	4.3	948	88	2	5981	36	14	18	29	1.91
18167--18204	19	2.0	19	94	0	67	78	2	13	5	1.02
18957--19033	12	6.9	12	75	19	62	41	0	46	11	1.40
18978--19038	9	7.1	9	74	10	65	42	0	44	13	1.43
18948--19044	42	2.3	42	92	0	158	45	0	43	11	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23986--62092	476	80.2	476	88	1	53434	36	15	18	29	1.92
26005--60414	159	217.1	156	64	14	4552	36	15	18	29	1.92
62572--63521	159	6.0	159	76	9	872	37	15	16	30	1.90
63316--68558	948	5.5	951	87	2	7145	36	15	18	29	1.92
63322--68558	476	11.1	476	87	2	7043	36	15	18	29	1.92
70190--70263	9	8.6	9	75	8	73	44	0	43	12	1.41
70175--70278	42	2.5	41	87	6	154	41	1	45	11	1.51
75233--80885	476	12.0	476	85	2	7390	35	15	19	30	1.92
75321--78817	159	22.1	156	65	13	568	35	15	19	30	1.92
81585--113289	159	199.8	157	65	11	4528	36	14	19	30	1.91
81585--127304	476	95.4	476	81	5	46354	35	15	18	30	1.92
91124--91834	162	4.4	157	64	17	348	36	14	18	30	1.91
99219--99929	162	4.4	155	65	15	345	36	14	18	30	1.91
113710--113734	13	1.9	13	100	0	50	36	16	16	32	1.90
113798--113822	13	1.9	13	100	0	50	32	16	16	36	1.90
113831--113954	52	2.4	51	90	2	203	36	17	17	28	1.93
120009--121154	159	7.2	159	65	16	349	34	13	20	31	1.91
126119--126775	159	4.1	157	67	11	370	36	14	19	29	1.91
127307--133722	475	13.5	475	87	1	8629	30	18	13	36	1.91
127307--133682	159	40.3	160	67	12	2139	31	18	13	36	1.91
127492--131648	317	13.1	313	66	14	1288	31	18	13	36	1.90
135339--135457	42	2.8	42	90	0	193	43	1	45	9	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135414--135463	18	2.8	18	81	6	57	44	2	46	8	1.44
140538--141233	385	1.8	387	87	2	1060	31	18	14	35	1.91
140977--154000	159	82.3	157	65	14	1235	31	18	13	35	1.91
140854--200374	475	124.3	474	79	5	53363	30	19	14	35	1.91
142180--153946	317	37.2	315	65	14	1852	31	18	13	35	1.91
159623--159741	42	2.8	42	92	0	193	8	46	2	42	1.47
159656--159731	12	6.9	11	75	15	52	9	48	2	39	1.49
159647--159732	24	3.8	24	72	17	85	10	45	2	41	1.51
159638--159708	18	3.6	18	69	20	52	9	43	2	43	1.52
161379--194020	159	206.1	161	65	13	4834	30	18	13	36	1.90
217142--219207	159	13.0	158	65	13	537	30	19	14	35	1.91
216879--219224	476	4.9	475	85	2	3107	30	18	14	36	1.91
216887--219219	950	2.5	950	89	1	3482	30	18	14	36	1.91
219221--228087	475	18.7	475	84	2	11235	30	18	14	36	1.90
219221--227883	159	54.8	159	65	11	1555	30	18	13	36	1.90
233065--233183	42	2.8	42	90	0	184	8	45	2	43	1.47
234791--245973	475	23.6	474	85	1	14773	30	18	14	35	1.91
234790--245973	950	11.8	950	94	0	18781	30	18	14	35	1.91
247598--247673	12	6.9	11	75	15	52	39	2	48	9	1.49
247597--247682	24	3.8	24	72	17	85	41	2	45	10	1.51
247588--247706	42	2.8	42	92	0	193	42	1	46	10	1.47
252680--260314	475	16.2	476	85	1	10302	30	18	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252680--260314	949	8.1	950	96	1	14006	30	18	14	35	1.91
257868--259972	156	13.4	154	64	16	582	30	18	14	35	1.91

Tables:   1

The End!