Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold71
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5741892
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.33
Warning! 121862 characters in sequence are not A, C, G, or T
File 10 of 33
Found at i:1534413 original size:14 final size:15
Alignment explanation
Indices: 1534394--1534424 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
1534384 AATATTTAGA
1534394 TTAATATTTA-AATT
1 TTAATATTTATAATT
1534408 TTAATATTTATAATT
1 TTAATATTTATAATT
1534423 TT
1 TT
1534425 TTATTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTAATATTTATAATT
Found at i:1535741 original size:2 final size:2
Alignment explanation
Indices: 1535734--1535778 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
1535724 CCATATGCTC
1535734 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1535776 AT A
1 AT A
1535779 AAAGAAAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1536223 original size:19 final size:20
Alignment explanation
Indices: 1536199--1536249 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 20
1536189 CCTAATTACT
1536199 ATTTTAATAAGTTTTT-TTA
1 ATTTTAATAAGTTTTTATTA
*
1536218 ATTTTATTAATAATTTTTTATTA
1 A--TT-TTAATAAGTTTTTATTA
1536241 ATTTTAATA
1 ATTTTAATA
1536250 TATTTAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
19 1 0.04
20 6 0.22
21 4 0.15
22 12 0.44
23 4 0.15
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
ATTTTAATAAGTTTTTATTA
Found at i:1536227 original size:22 final size:23
Alignment explanation
Indices: 1536202--1536246 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
1536192 AATTACTATT
1536202 TTAATAAGTTTTT-TTAATTTTA
1 TTAATAAGTTTTTATTAATTTTA
*
1536224 TTAATAATTTTTTATTAATTTTA
1 TTAATAAGTTTTTATTAATTTTA
1536247 ATATATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
TTAATAAGTTTTTATTAATTTTA
Found at i:1536244 original size:11 final size:11
Alignment explanation
Indices: 1536200--1536245 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 11
1536190 CTAATTACTA
1536200 TTTTAATAAGTT
1 TTTTAATAA-TT
1536212 TTTT--TAATT
1 TTTTAATAATT
1536221 TTATTAATAATT
1 TT-TTAATAATT
*
1536233 TTTTATTAATT
1 TTTTAATAATT
1536244 TT
1 TT
1536246 AATATATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
9 4 0.13
10 5 0.17
11 10 0.33
12 11 0.37
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (11 bp):
TTTTAATAATT
Found at i:1536710 original size:20 final size:19
Alignment explanation
Indices: 1536685--1536735 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
1536675 TTTTCAGTAA
*
1536685 ATTTATTTAAATATTAAATT
1 ATTTATTTAAATAATAAA-T
*
1536705 ATTTATTTAATTTAATAAAT
1 ATTTATTTAA-ATAATAAAT
1536725 -TTTATTTAAAT
1 ATTTATTTAAAT
1536736 TTTATCAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.04
19 9 0.33
20 11 0.41
21 6 0.22
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTATTTAAATAATAAAT
Found at i:1536745 original size:20 final size:19
Alignment explanation
Indices: 1536706--1536806 Score: 71
Period size: 22 Copynumber: 4.9 Consensus size: 19
1536696 TATTAAATTA
1536706 TTTATTTAATTTAATAAAT
1 TTTATTTAATTTAATAAAT
* *
1536725 TTTATTTAAATTTTATCAAT
1 TTTATTT-AATTTAATAAAT
* *
1536745 TTTAAAATATAATATT-TTAAAT
1 TTT---ATTTAAT-TTAATAAAT
1536767 TTATATTTAATTTAATTTAAAT
1 TT-TATTTAATTTAA--TAAAT
1536789 TATTATTTAA-TTAATAAA
1 T-TTATTTAATTTAATAAA
1536807 AAATATTTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 20
0.71 0.08 0.22
Matches are distributed among these distances:
19 13 0.20
20 19 0.29
21 4 0.06
22 22 0.34
23 7 0.11
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTATTTAATTTAATAAAT
Found at i:1537776 original size:7 final size:7
Alignment explanation
Indices: 1537764--1537793 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
1537754 AAAAAATTTA
1537764 TTTTAAT
1 TTTTAAT
1537771 TTTTAAT
1 TTTTAAT
1537778 TTTTAAT
1 TTTTAAT
1537785 TTTT-AT
1 TTTTAAT
1537791 TTT
1 TTT
1537794 AAAATTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTAAT
Found at i:1537783 original size:14 final size:13
Alignment explanation
Indices: 1537760--1537807 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
1537750 GTTAAAAAAA
1537760 TTTA-TTTTAATT
1 TTTATTTTTAATT
1537772 TTTAATTTTTAATT
1 TTT-ATTTTTAATT
* *
1537786 TTTATTTTAAAAT
1 TTTATTTTTAATT
*
1537799 TATATTTTT
1 TTTATTTTT
1537808 TAAGAGTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
12 3 0.10
13 16 0.53
14 11 0.37
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTATTTTTAATT
Found at i:1537861 original size:22 final size:22
Alignment explanation
Indices: 1537836--1537884 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
1537826 TAAATTTACG
* * *
1537836 AATTAATTTAATATTTATATTT
1 AATTAATTAAAAAATTATATTT
* *
1537858 AATTTATTAAAAAATTATTTTT
1 AATTAATTAAAAAATTATATTT
1537880 AATTA
1 AATTA
1537885 TTTTTAATTA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
AATTAATTAAAAAATTATATTT
Found at i:1537885 original size:10 final size:10
Alignment explanation
Indices: 1537870--1537896 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
1537860 TTTATTAAAA
1537870 AATTATTTTT
1 AATTATTTTT
1537880 AATTATTTTT
1 AATTATTTTT
1537890 AATTATT
1 AATTATT
1537897 AATTTTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
AATTATTTTT
Found at i:1538007 original size:21 final size:21
Alignment explanation
Indices: 1537981--1538031 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
1537971 AAAAAAATTA
*
1537981 TTTTATTAAT-TATTTTTTAT
1 TTTTATTAATAAATTTTTTAT
1538001 TTTT-TATATATAAATTTTTTAT
1 TTTTAT-TA-ATAAATTTTTTAT
1538023 TTTTATTAA
1 TTTTATTAA
1538032 GAGATTGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 1 0.04
20 6 0.23
21 3 0.12
22 15 0.58
23 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTATTAATAAATTTTTTAT
Found at i:1538053 original size:120 final size:118
Alignment explanation
Indices: 1537929--1538143 Score: 306
Period size: 118 Copynumber: 1.8 Consensus size: 118
1537919 ATTTACTTGT
* * *
1537929 TAATTTAAAAATTGATTTAAAATCTAAAATAAATTTATTCATAAAAAAATTATTTTATTAATTAT
1 TAATTTAAAAATTAATTTAAAATCTAAAATAAACTAATT--TAAAAAAATTATTTTATTAATTA-
1537994 TTTTTAT-TTTTTATATATAAATTTTTTATTTTTATTAAGAGATTGATTTACAAAG
63 TTTTTATCTTTTTATATATAAATTTTTTATTTTTATTAAGAGATTGATTTACAAAG
* * * * * *
1538049 TAATTTATAAATTAATTTAAAATTTATACTCAACTAATTTAAAAAAATTATTTTATTACTTATTT
1 TAATTTAAAAATTAATTTAAAATCTAAAATAAACTAATTTAAAAAAATTATTTTATTAATTATTT
*
1538114 TTATCTTTTTATATTTAAATTTTTTATTTT
66 TTATCTTTTTATATATAAATTTTTTATTTT
1538144 ATTTTATTTT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
117 7 0.08
118 46 0.55
120 31 0.37
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (118 bp):
TAATTTAAAAATTAATTTAAAATCTAAAATAAACTAATTTAAAAAAATTATTTTATTAATTATTT
TTATCTTTTTATATATAAATTTTTTATTTTTATTAAGAGATTGATTTACAAAG
Found at i:1538389 original size:17 final size:17
Alignment explanation
Indices: 1538369--1538401 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
1538359 TTTAAATAAA
1538369 TTTTTATTTTATTTTAT
1 TTTTTATTTTATTTTAT
1538386 TTTTTATTTTATTTTA
1 TTTTTATTTTATTTTA
1538402 AAAGATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTATTTTATTTTAT
Found at i:1538390 original size:12 final size:12
Alignment explanation
Indices: 1538375--1538400 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1538365 TAAATTTTTA
1538375 TTTTATTTTATT
1 TTTTATTTTATT
1538387 TTTTATTTTATT
1 TTTTATTTTATT
1538399 TT
1 TT
1538401 AAAAGATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTATTTTATT
Found at i:1538490 original size:15 final size:15
Alignment explanation
Indices: 1538470--1538504 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
1538460 CTCAAACTCT
1538470 TTTAAAAAATAAAAC
1 TTTAAAAAATAAAAC
*
1538485 TTT-AAAAATAAAAT
1 TTTAAAAAATAAAAC
1538499 TTTAAA
1 TTTAAA
1538505 TTTTAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
TTTAAAAAATAAAAC
Found at i:1538526 original size:14 final size:14
Alignment explanation
Indices: 1538509--1538564 Score: 67
Period size: 16 Copynumber: 3.6 Consensus size: 14
1538499 TTTAAATTTT
1538509 AAATAAAAAATAAA
1 AAATAAAAAATAAA
1538523 AAATAATAAAATAATA
1 AAATAA-AAAATAA-A
1538539 ATAATAAAAATATAAAA
1 A-AATAAAAA-AT-AAA
1538556 AAATAAAAA
1 AAATAAAAA
1538565 TAATTAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.16
15 7 0.19
16 13 0.35
17 9 0.24
18 2 0.05
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATAAAAAATAAA
Found at i:1538533 original size:8 final size:7
Alignment explanation
Indices: 1538509--1538564 Score: 67
Period size: 7 Copynumber: 7.3 Consensus size: 7
1538499 TTTAAATTTT
1538509 AAATAAA
1 AAATAAA
1538516 AAATAAA
1 AAATAAA
1538523 AAATAATA
1 AAATAA-A
1538531 AAATAATA
1 AAATAA-A
1538539 ATAATAAA
1 A-AATAAA
1538547 AATATAAAA
1 AA-AT-AAA
1538556 AAATAAA
1 AAATAAA
1538563 AA
1 AA
1538565 TAATTAATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
7 19 0.42
8 16 0.36
9 10 0.22
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (7 bp):
AAATAAA
Found at i:1538538 original size:25 final size:23
Alignment explanation
Indices: 1538509--1538564 Score: 78
Period size: 25 Copynumber: 2.4 Consensus size: 23
1538499 TTTAAATTTT
*
1538509 AAATAAAAAATAAAAA-ATAATA
1 AAATAAAAAATAAAAATATAAAA
1538531 AAATAATAATAATAAAAATATAAAA
1 AAATAA-AA-AATAAAAATATAAAA
1538556 AAATAAAAA
1 AAATAAAAA
1538565 TAATTAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 6 0.20
23 3 0.10
24 10 0.33
25 11 0.37
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (23 bp):
AAATAAAAAATAAAAATATAAAA
Found at i:1539837 original size:18 final size:16
Alignment explanation
Indices: 1539814--1539851 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 16
1539804 CAATCATAAA
1539814 TTTATTTTATTTATTATT
1 TTTATTTTA-TT-TTATT
1539832 TTTATTTTATTTTATT
1 TTTATTTTATTTTATT
1539848 TTTA
1 TTTA
1539852 AATAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 9 0.45
17 2 0.10
18 9 0.45
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTATTTTATTTTATT
Found at i:1540088 original size:9 final size:9
Alignment explanation
Indices: 1540074--1540098 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
1540064 TTAAATTTAA
1540074 TTTAAAATT
1 TTTAAAATT
1540083 TTTAAAATT
1 TTTAAAATT
1540092 TTTAAAA
1 TTTAAAA
1540099 GTTAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
TTTAAAATT
Found at i:1540144 original size:20 final size:19
Alignment explanation
Indices: 1540115--1540192 Score: 61
Period size: 20 Copynumber: 4.1 Consensus size: 19
1540105 TTTTAAATTT
* *
1540115 TAAATCTCATAATTTTATAA
1 TAAATATCATAATATT-TAA
1540135 TAAATATCATAATATTTAA
1 TAAATATCATAATATTTAA
* * *
1540154 TCAAATA-CAT-ATGTTCAT
1 T-AAATATCATAATATTTAA
* *
1540172 TAAATATTATTATATTTAA
1 TAAATATCATAATATTTAA
1540191 TA
1 TA
1540193 TTTTTATTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
17 5 0.11
18 8 0.17
19 14 0.30
20 19 0.41
ACGTcount: A:0.46, C:0.08, G:0.01, T:0.45
Consensus pattern (19 bp):
TAAATATCATAATATTTAA
Found at i:1540690 original size:17 final size:17
Alignment explanation
Indices: 1540650--1540699 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
1540640 TCACTTGAGT
* *
1540650 TTATTAAAATTAAATAA
1 TTATTATAATAAAATAA
*
1540667 -AATTATAATAAAATAA
1 TTATTATAATAAAATAA
1540683 TTATTAT-ATGAAAATAA
1 TTATTATAAT-AAAATAA
1540700 AATAAAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
16 15 0.56
17 12 0.44
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
TTATTATAATAAAATAA
Found at i:1541147 original size:30 final size:29
Alignment explanation
Indices: 1541106--1541176 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
1541096 TTTGATAACT
* *
1541106 TTTTATTTTTTA-TTGCATCTAAATAAAAA
1 TTTTAATTTTTATTTGCATATAAAT-AAAA
* *
1541135 TTTTAATGTTTTATTTGTATATAAATAAAT
1 TTTTAAT-TTTTATTTGCATATAAATAAAA
1541165 TTTTAATTTTTA
1 TTTTAATTTTTA
1541177 CTTTTTAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 11 0.31
30 15 0.42
31 10 0.28
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.58
Consensus pattern (29 bp):
TTTTAATTTTTATTTGCATATAAATAAAA
Found at i:1542471 original size:17 final size:18
Alignment explanation
Indices: 1542451--1542497 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
1542441 AAAATTATAT
*
1542451 TTAAATA-AATACTAAAA
1 TTAAATATAATACAAAAA
1542468 TTAAA-ATAATACAAAAA
1 TTAAATATAATACAAAAA
1542485 TTAAATATTAATA
1 TTAAATA-TAATA
1542498 TTTAATTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 1 0.04
17 19 0.73
18 1 0.04
19 5 0.19
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (18 bp):
TTAAATATAATACAAAAA
Found at i:1543566 original size:4 final size:4
Alignment explanation
Indices: 1543559--1543595 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
1543549 GATTTGATAG
1543559 AATA AATA AATA AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA A
1543596 TCTTGTTGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:1548369 original size:16 final size:17
Alignment explanation
Indices: 1548345--1548378 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1548335 AAAGGTAACT
1548345 TGGACAAAT-TTTGCGA
1 TGGACAAATATTTGCGA
*
1548361 TGGAGAAATATTTGCGA
1 TGGACAAATATTTGCGA
1548378 T
1 T
1548379 TAGTTATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (17 bp):
TGGACAAATATTTGCGA
Found at i:1548470 original size:5 final size:5
Alignment explanation
Indices: 1548460--1548484 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
1548450 GAATCATAAA
1548460 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
1548485 TGTCTTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:1551510 original size:13 final size:15
Alignment explanation
Indices: 1551484--1551525 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
1551474 AAGGTCTAAT
1551484 TTATTT-ATATAATTA
1 TTATTTAATA-AATTA
1551499 TT-TTTAA-AAATTA
1 TTATTTAATAAATTA
1551512 TTATTTAATAAATT
1 TTATTTAATAAATT
1551526 TAAAATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.29
14 9 0.38
15 8 0.33
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATTTAATAAATTA
Found at i:1553591 original size:19 final size:20
Alignment explanation
Indices: 1553554--1553599 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
1553544 TTAAAAATCC
1553554 AGGAAAATAAATAAAAAGAA
1 AGGAAAATAAATAAAAAGAA
1553574 AGGAAAATAAAT-AAAAGAA
1 AGGAAAATAAATAAAAAGAA
1553593 A-GAAAAT
1 AGGAAAAT
1553600 GGATATAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 6 0.23
19 8 0.31
20 12 0.46
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (20 bp):
AGGAAAATAAATAAAAAGAA
Found at i:1559599 original size:2 final size:2
Alignment explanation
Indices: 1559592--1559616 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1559582 GAAAACTCTT
1559592 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1559617 TCTAAATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1559868 original size:26 final size:26
Alignment explanation
Indices: 1559830--1559893 Score: 78
Period size: 25 Copynumber: 2.4 Consensus size: 26
1559820 ATATTTATAG
1559830 AAAAATATAATTAATAT-ATTATTTTTT
1 AAAAATATAATTAATATGA--ATTTTTT
*
1559857 AAAATTAT-ATTAATATGAATTTTTT
1 AAAAATATAATTAATATGAATTTTTT
1559882 AAAAATAATAAT
1 AAAAAT-ATAAT
1559894 AAAATAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 12 0.38
26 10 0.31
27 10 0.31
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (26 bp):
AAAAATATAATTAATATGAATTTTTT
Found at i:1564013 original size:32 final size:33
Alignment explanation
Indices: 1563946--1564037 Score: 105
Period size: 32 Copynumber: 2.7 Consensus size: 33
1563936 AATAACATGA
* * *
1563946 ATATAAAATAAATATATAAATTTATTAAAATTT
1 ATATAATATAAATATATAAATATATCAAAATTT
*
1563979 ATATAATATAAAT-TATTAATATATCAAAATTT
1 ATATAATATAAATATATAAATATATCAAAATTT
*
1564011 ATATAAATATATAATACTTTAAATATA
1 ATAT-AATATA-AATA-TATAAATATA
1564038 ATTATAATAT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
32 20 0.41
33 18 0.37
34 3 0.06
36 8 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.42
Consensus pattern (33 bp):
ATATAATATAAATATATAAATATATCAAAATTT
Found at i:1564045 original size:6 final size:7
Alignment explanation
Indices: 1563978--1564079 Score: 58
Period size: 6 Copynumber: 15.0 Consensus size: 7
1563968 TATTAAAATT
1563978 TATATAA
1 TATATAA
1563985 TATA-AA
1 TATATAA
1563991 T-TATTAA
1 TATA-TAA
1563998 TATATCAA
1 TATAT-AA
* *
1564006 AAT-TTA
1 TATATAA
1564012 TATA-AA
1 TATATAA
1564018 TATATAA
1 TATATAA
*
1564025 TACTTTAA
1 TA-TATAA
1564033 -ATATAA
1 TATATAA
1564039 T-TATAA
1 TATATAA
1564045 TATATAAAA
1 TATAT--AA
*
1564054 TATGTAA
1 TATATAA
*
1564061 -AAATAA
1 TATATAA
1564067 TATA-AA
1 TATATAA
1564073 TATATAA
1 TATATAA
1564080 ATTATCAAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 26
0.67 0.09 0.24
Matches are distributed among these distances:
5 2 0.03
6 31 0.43
7 23 0.32
8 10 0.14
9 6 0.08
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (7 bp):
TATATAA
Found at i:1564081 original size:27 final size:27
Alignment explanation
Indices: 1563981--1564081 Score: 91
Period size: 27 Copynumber: 3.7 Consensus size: 27
1563971 TAAAATTTAT
*
1563981 ATAATATAAAT-TATTAATATATCAAAA
1 ATAATATAAATATATAAATATAT-AAAA
* * * *
1564008 TTTATATAAATATAT-AATACTTTAAAT
1 ATAATATAAATATATAAATA-TATAAAA
*
1564035 ATAAT-TATAATATATAAAATATGTAAAA
1 ATAATATA-AATATAT-AAATATATAAAA
1564063 ATAATATAAATATATAAAT
1 ATAATATAAATATATAAAT
1564082 TATCAAATCA
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
26 2 0.03
27 30 0.50
28 22 0.37
29 6 0.10
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (27 bp):
ATAATATAAATATATAAATATATAAAA
Found at i:1570752 original size:19 final size:19
Alignment explanation
Indices: 1570716--1570757 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
1570706 TTTAAAATTT
*
1570716 ATTTAAATTTATTTTTTAA
1 ATTTAAATTTATTATTTAA
*
1570735 ATTTAATATTT-TTATTTAC
1 ATTTAA-ATTTATTATTTAA
1570754 ATTT
1 ATTT
1570758 TTTAAATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTAAATTTATTATTTAA
Found at i:1576263 original size:30 final size:30
Alignment explanation
Indices: 1576227--1576289 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
1576217 GCAGCCACAC
1576227 AAAAATTAGGTGTATAATAAAAGCTACATG
1 AAAAATTAGGTGTATAATAAAAGCTACATG
1576257 AAAAATTAGGTGTATAATAAAAGCTACATG
1 AAAAATTAGGTGTATAATAAAAGCTACATG
1576287 AAA
1 AAA
1576290 TTCTGGGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.52, C:0.06, G:0.16, T:0.25
Consensus pattern (30 bp):
AAAAATTAGGTGTATAATAAAAGCTACATG
Found at i:1579163 original size:97 final size:97
Alignment explanation
Indices: 1578993--1579176 Score: 255
Period size: 97 Copynumber: 1.9 Consensus size: 97
1578983 ATTCATTGGG
*
1578993 ATACTCTAACCTCCTTTTTAAACTTGTCAATATTTAAATCTTATTTTTGCTGAAATTATCATCAT
1 ATACTCTAACCTCCTTTTTAAACTTGTCAATATTTAAATCTTATTTTTGCTGAAATTATAATCAT
* *
1579058 CGGAGATACTCTAACCCTATTCTTTTGAGAAA
66 CGGAGATACTCCAACCATATTCTTTTGAGAAA
* **
1579090 ATACTCTAACTTTGTTTTTAAACTTGTC-ATGATTTAAATCTTATTTTTGTCT-AAATTATAATC
1 ATACTCTAACCTCCTTTTTAAACTTGTCAAT-ATTTAAATCTTATTTTTG-CTGAAATTATAATC
* * *
1579153 GTTGGGGATACTCCAACCATATTC
64 ATCGGAGATACTCCAACCATATTC
1579177 CTCTAAGGGG
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
96 2 0.03
97 72 0.95
98 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.43
Consensus pattern (97 bp):
ATACTCTAACCTCCTTTTTAAACTTGTCAATATTTAAATCTTATTTTTGCTGAAATTATAATCAT
CGGAGATACTCCAACCATATTCTTTTGAGAAA
Found at i:1579191 original size:97 final size:97
Alignment explanation
Indices: 1578990--1579194 Score: 243
Period size: 97 Copynumber: 2.1 Consensus size: 97
1578980 TTTATTCATT
*
1578990 GGGATACTCTAACCTCCTTTTTAAACTTGTCAATATTTAAATCTTATTTTTGCTGAAATTATCAT
1 GGGATACTCTAACCTCCTTTTTAAACTTGTCAATATTTAAATCTTATTTTTGCTGAAATTATAAT
* * * * *
1579055 CATCGGAGATACTCTAACCCTATTCTTTTGAG
66 CATCGGAGATACTCCAACCATATTCCTCTAAG
*** * **
1579087 AAAATACTCTAACTTTGTTTTTAAACTTGTC-ATGATTTAAATCTTATTTTTGTCT-AAATTATA
1 GGGATACTCTAACCTCCTTTTTAAACTTGTCAAT-ATTTAAATCTTATTTTTG-CTGAAATTATA
* * *
1579150 ATCGTTGGGGATACTCCAACCATATTCCTCTAAG
64 ATCATCGGAGATACTCCAACCATATTCCTCTAAG
1579184 GGGATACTCTA
1 GGGATACTCTA
1579195 GCTCCATTTT
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
96 2 0.02
97 84 0.95
98 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (97 bp):
GGGATACTCTAACCTCCTTTTTAAACTTGTCAATATTTAAATCTTATTTTTGCTGAAATTATAAT
CATCGGAGATACTCCAACCATATTCCTCTAAG
Found at i:1581403 original size:20 final size:21
Alignment explanation
Indices: 1581355--1581410 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
1581345 TTCTACAATT
*
1581355 TGTATCGATACAAAAAGTAAA
1 TGTATCGATACAAAAAGGAAA
* * *
1581376 TATATCGATAC-ATAAGGGAA
1 TGTATCGATACAAAAAGGAAA
*
1581396 TGTATCGATATAAAA
1 TGTATCGATACAAAA
1581411 CTACCATGCA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (21 bp):
TGTATCGATACAAAAAGGAAA
Found at i:1581483 original size:22 final size:20
Alignment explanation
Indices: 1581437--1581510 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 20
1581427 CAAGAAAATA
* * *
1581437 TATCGATACATATGTAAATG
1 TATCGATACATTTCTAATTG
1581457 TATCGATACATGCTTAC-AATTG
1 TATCGATACAT--TT-CTAATTG
*
1581479 TATCGATACATTTCTCATTG
1 TATCGATACATTTCTAATTG
1581499 TATCGATACATT
1 TATCGATACATT
1581511 CTGTGTTTTC
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
19 1 0.02
20 29 0.63
22 16 0.35
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.39
Consensus pattern (20 bp):
TATCGATACATTTCTAATTG
Found at i:1583843 original size:22 final size:22
Alignment explanation
Indices: 1583815--1583858 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
1583805 CCCTTGAATG
1583815 TATGAATTTTATATAAAAACAA
1 TATGAATTTTATATAAAAACAA
1583837 TATGAATTTTATATAAAAACAA
1 TATGAATTTTATATAAAAACAA
1583859 ATCCAAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (22 bp):
TATGAATTTTATATAAAAACAA
Found at i:1584026 original size:13 final size:13
Alignment explanation
Indices: 1584008--1584032 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1583998 TGCCTTTACG
1584008 ATTTTGAAAATAA
1 ATTTTGAAAATAA
1584021 ATTTTGAAAATA
1 ATTTTGAAAATA
1584033 TGAATGCGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
ATTTTGAAAATAA
Found at i:1584562 original size:18 final size:18
Alignment explanation
Indices: 1584539--1584575 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
1584529 CACTCAATTT
1584539 TGGCTACAACAAAAAAAA
1 TGGCTACAACAAAAAAAA
*
1584557 TGGCTACAACCAAAAAAA
1 TGGCTACAACAAAAAAAA
1584575 T
1 T
1584576 AAGGGATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.57, C:0.19, G:0.11, T:0.14
Consensus pattern (18 bp):
TGGCTACAACAAAAAAAA
Found at i:1587495 original size:79 final size:78
Alignment explanation
Indices: 1587393--1587612 Score: 244
Period size: 79 Copynumber: 2.8 Consensus size: 78
1587383 ACAACGGGGC
* * *
1587393 TGGAGTATCCCGATTATGAAAAATCGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCA
1 TGGAGTATCCCGATTATGAAAAATCGGTATTTTGGAAATAAAATCGAGGTTAGAGTATCCCCTCA
**
1587458 AAAATAGTAGGGT
66 AAAATAACAGGGT
* * * * * *
1587471 TGGAGTATACCTGATTAT-AGAAAATCGGCACTTTGAAAATAAAATCGAGGTTAAAGTATCCTCT
1 TGGAGTAT-CCCGATTATGA-AAAATCGGTATTTTGGAAATAAAATCGAGGTTAGAGTATCCCCT
* *
1587535 CGAAAGTAACAGGGT
64 CAAAAATAACAGGGT
* * * * *
1587550 TAGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATAGAGGTTAGAGTATCCCC
1 TGGAGTAT-CCCGATTATGAAAAATCGGTATTTTGGAAATAAAATCGAGGTTAGAGTATCCCC
1587613 GATTGTGAGA
Statistics
Matches: 114, Mismatches: 25, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
78 9 0.08
79 104 0.91
80 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.28
Consensus pattern (78 bp):
TGGAGTATCCCGATTATGAAAAATCGGTATTTTGGAAATAAAATCGAGGTTAGAGTATCCCCTCA
AAAATAACAGGGT
Found at i:1587633 original size:51 final size:51
Alignment explanation
Indices: 1587547--1587643 Score: 158
Period size: 51 Copynumber: 1.9 Consensus size: 51
1587537 AAAGTAACAG
***
1587547 GGTTAGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATAGA
1 GGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAATAGA
*
1587598 GGTTAGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAA
1 GGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAA
1587644 GCCGGGGTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.31
Consensus pattern (51 bp):
GGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAATAGA
Found at i:1587658 original size:51 final size:51
Alignment explanation
Indices: 1587542--1587661 Score: 152
Period size: 51 Copynumber: 2.4 Consensus size: 51
1587532 TCTCGAAAGT
***
1587542 AACA-GGGTTAGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAA
1 AACAGGGGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAA
* * *
1587592 AATAGAGGTTAGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAA
1 AACAGGGGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAA
* * *
1587643 AGCCGGGGTTGGAGTATCC
1 AACAGGGGTTAGAGTATCC
1587662 TCTCAGAAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 3 0.05
51 55 0.95
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (51 bp):
AACAGGGGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAA
Found at i:1587731 original size:80 final size:77
Alignment explanation
Indices: 1587603--1587822 Score: 264
Period size: 77 Copynumber: 2.8 Consensus size: 77
1587593 ATAGAGGTTA
* *** * *
1587603 GAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCCTCTCAG
1 GAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCC-C-C-G
1587668 A-AATAACGGGATTG
63 ATAATAACGGGATTG
**
1587682 GAGTATCCCCGATTGTGAAAAGATTGGTGTTTTAGAAATAAAATTGGGGTTGGAGTATCCCCGAT
1 GAGTATCCCCGATTGTGAAAA-ATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGAT
*
1587747 AATAAGGGGATTG
65 AATAACGGGATTG
* * * *
1587760 GAGTATCCCCGATTATGAAAAA-TGGATGTTTTGGAAATAAAACCAGAGTTGGAGTATCCCCGA
1 GAGTATCCCCGATTGTGAAAAATTGG-TGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGA
1587823 GATGAAAAAT
Statistics
Matches: 123, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
76 3 0.02
77 35 0.28
78 33 0.27
79 21 0.17
80 31 0.25
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (77 bp):
GAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGATA
ATAACGGGATTG
Found at i:1590178 original size:13 final size:13
Alignment explanation
Indices: 1590131--1590160 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
1590121 GTAAACCCAT
1590131 AATGTATCGATAC
1 AATGTATCGATAC
1590144 AATGTATCGATAC
1 AATGTATCGATAC
1590157 AATG
1 AATG
1590161 AACAATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1590827 original size:41 final size:42
Alignment explanation
Indices: 1590761--1591113 Score: 221
Period size: 41 Copynumber: 8.5 Consensus size: 42
1590751 AAGGAAAGAG
* * **
1590761 GCGTCCTGCTCTTTAAAGATTAAGGAAAAAGAG-AATGAAAT
1 GCGTCCTGCTCTTTGAGGACAAAGGAAAAAGAGAAATGAAAT
* *
1590802 GCGTCCTGCTCCTTGAGGACAAAGGAAAAAG-GAAATAAAAT
1 GCGTCCTGCTCTTTGAGGACAAAGGAAAAAGAGAAATGAAAT
** * ** *
1590843 GTATCATGC-CTTTTGAAAACAAAGGAAAAAG-GAAATTAAAT
1 GCGTCCTGCTC-TTTGAGGACAAAGGAAAAAGAGAAATGAAAT
** * * *
1590884 ATGTCCTACTTTTTGAGGACAAAGGAAAAATGAG-CAT-AAAGT
1 GCGTCCTGCTCTTTGAGGACAAAGGAAAAA-GAGAAATGAAA-T
* * * *
1590926 GCGTCCTGCTGTTTGAGAACTAGAAGGGAAAAGAAAGAAATGAAGT
1 GCGTCCTGCTCTTTGAGGAC-A-AA-GGAAAA-AGAGAAATGAAAT
* * *
1590972 GCGTCTTGCTATTTGAGGACAAAGGAAAAAG-GAAA--AAAA
1 GCGTCCTGCTCTTTGAGGACAAAGGAAAAAGAGAAATGAAAT
* * * *
1591011 GCATCCTGCTCTTTGAAGATAAAAGGGAAAAGAAGGAAATGAAAT
1 GCGTCCTGCTCTTTGAGGA-CAAAGGAAAAAG-A-GAAATGAAAT
* * * *
1591056 GTGTCATGCTCTTTGAGGGCAAAGGAGAAAA-AG--A--AAAG
1 GCGTCCTGCTCTTTGAGGACAAAGGA-AAAAGAGAAATGAAAT
1591094 GCGTCCTGCTCTTTGAGGAC
1 GCGTCCTGCTCTTTGAGGAC
1591114 TAAAAAGTGC
Statistics
Matches: 240, Mismatches: 53, Indels: 41
0.72 0.16 0.12
Matches are distributed among these distances:
38 20 0.08
39 17 0.07
40 13 0.05
41 94 0.39
42 21 0.09
43 13 0.05
44 9 0.04
45 30 0.12
46 21 0.09
47 2 0.01
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.22
Consensus pattern (42 bp):
GCGTCCTGCTCTTTGAGGACAAAGGAAAAAGAGAAATGAAAT
Found at i:1591071 original size:84 final size:84
Alignment explanation
Indices: 1590764--1591118 Score: 268
Period size: 84 Copynumber: 4.2 Consensus size: 84
1590754 GAAAGAGGCG
* * * *
1590764 TCCTGCTCTTTAAAGAT-TAAGGAAAAAG-A-G-AATGAAATGCGTCCTGCTCCTTGAGGACAAA
1 TCCTGCTCTTTGAAGATAAAAGGGAAAAGAAGGAAATGAAATGCGTCCTGCTCTTTGAGGACAAA
*
1590825 GGAAAAAGGAAATAAAATGTA
66 GGAAAAAGGAAA-AAAA-GCA
* * ** * *
1590846 TCATGC-CTTTTGAA-A-ACAAA-GG-AAA-AAGGAAATTAAATATGTCCTACTTTTTGAGGACA
1 TCCTGCTC-TTTGAAGATA-AAAGGGAAAAGAAGGAAATGAAATGCGTCCTGCTCTTTGAGGACA
* ** *
1590905 AAGGAAAAATGAGCATAAAGTGCG
64 AAGGAAAAA-G-G-AAAAAAAGCA
* * * * * *
1590929 TCCTGCTGTTTG-AGAACTAGAAGGGAAAAGAAAGAAATGAAGTGCGTCTTGCTATTTGAGGACA
1 TCCTGCTCTTTGAAG-A-TAAAAGGGAAAAGAAGGAAATGAAATGCGTCCTGCTCTTTGAGGACA
1590993 AAGGAAAAAGGAAAAAAAGCA
64 AAGGAAAAAGGAAAAAAAGCA
* * *
1591014 TCCTGCTCTTTGAAGATAAAAGGGAAAAGAAGGAAATGAAATGTGTCATGCTCTTTGAGGGCAAA
1 TCCTGCTCTTTGAAGATAAAAGGGAAAAGAAGGAAATGAAATGCGTCCTGCTCTTTGAGGACAAA
* * *
1591079 GGAGAAAA--AGAAAAGGCG
66 GGA-AAAAGGAAAAAAAGCA
*
1591097 TCCTGCTCTTTGAGGACTAAAA
1 TCCTGCTCTTTGAAGA-TAAAA
1591119 AGTGCCACCA
Statistics
Matches: 211, Mismatches: 42, Indels: 38
0.73 0.14 0.13
Matches are distributed among these distances:
80 4 0.02
81 4 0.02
82 45 0.21
83 33 0.16
84 54 0.26
85 26 0.12
86 6 0.03
87 4 0.02
88 35 0.17
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (84 bp):
TCCTGCTCTTTGAAGATAAAAGGGAAAAGAAGGAAATGAAATGCGTCCTGCTCTTTGAGGACAAA
GGAAAAAGGAAAAAAAGCA
Found at i:1591178 original size:61 final size:61
Alignment explanation
Indices: 1591084--1591548 Score: 525
Period size: 62 Copynumber: 7.6 Consensus size: 61
1591074 GCAAAGGAGA
* * *
1591084 AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG
1 AAAAGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
* ** *
1591145 AAAAGAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACTGACTTGTGTAGGCTTTG
1 AAAAGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
* * * *
1591206 CAAAGAAAAAGGTGTCCTGCCCTTTGAGGACCAGAAAGGTGCCACCAACTTGTGTGGGCTTCG
1 AAAAG-AAAAGGTGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTTG
* * **
1591269 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGATGCCACCAGTTTGTGTGGGCTTTG
1 AAAAGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGG-TGCCACCAACTTGTGTGGGCTTTG
* *
1591330 AAAAGAAAAAGGTGTCCTGCTCTTTGAGGATTAGAAAGGTGCCACCAACTTGTGTGGGC-TTC
1 AAAAG-AAAAGGTGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTTG
* * * * * * *
1591392 AAAAGGAAAAGGCGTCCTACTC-TTGAAAGACTAAATATGTGCCACCAGCTCGTGTGGGCTTTA
1 AAAA-GAAAAGGTGTCCTGCTCTTTG-AGGACTAAA-AGGTGCCACCAACTTGTGTGGGCTTTG
* * * *
1591455 AAAAGAAAAGGTGTCTTGCTCTTTGAGGACTAAAGGGTGCTACCAACTTGTGTAGGCTTT-
1 AAAAGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
* *
1591515 ----G-AAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTG
1 AAAAGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTG
1591549 AAATGAGAGA
Statistics
Matches: 344, Mismatches: 49, Indels: 28
0.82 0.12 0.07
Matches are distributed among these distances:
55 31 0.09
56 1 0.00
60 5 0.01
61 108 0.31
62 138 0.40
63 56 0.16
64 5 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (61 bp):
AAAAGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
Found at i:1591662 original size:61 final size:61
Alignment explanation
Indices: 1591567--1591757 Score: 271
Period size: 61 Copynumber: 3.1 Consensus size: 61
1591557 GAGTGTTCTA
*
1591567 CTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCTTG
1 CTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTG
*
1591628 CTCTTTGAGGACT-GGAAGGTACCACCAACTTGTGTGGGCTTTAAAAGGA-AAAG-ATGTCCTG
1 CTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCA--TCCTG
* * * * *
1591689 TTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTG
1 CTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTG
1591750 CTCTTTGA
1 CTCTTTGA
1591758 AGATAAAAGG
Statistics
Matches: 116, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
59 1 0.01
60 8 0.07
61 100 0.86
62 7 0.06
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (61 bp):
CTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTG
Found at i:1592024 original size:62 final size:61
Alignment explanation
Indices: 1591815--1592279 Score: 498
Period size: 61 Copynumber: 7.6 Consensus size: 61
1591805 GCAAAGGAGA
* * * *
1591815 AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG
1 AAAAGAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
* ** *
1591876 AAAAGAAAAAGTGTCTTGCTCTTTGAGGACTAAAAGGTGCCACTGACTTGTGTAGGCTTTG
1 AAAAGAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
* * * *
1591937 CAAAGAAAAAGGTGTCCTGCCCTTTGAGGACCAGAAAGGTGCCACCAACTTGTGTGGGCTTCG
1 AAAAGAAAAA-GTGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTTG
* * **
1592000 AAAGGAAAAAGCGTCCTGCTCTTTGAGGACT-AAAGGATGCCACCAGTTTGTGTGGGCTTTG
1 AAAAGAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGG-TGCCACCAACTTGTGTGGGCTTTG
* *
1592061 AAAAGAAAAAGGTGTCCTGCTCTTTGAGGATTAGAAAGGTGCCACCAACTTGTGTGGGC-TTC
1 AAAAGAAAAA-GTGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTTG
* * * * * * * *
1592123 AAAAGGAAAAGGCGTCCTACTC-TTGAAAGACTAAAAATGTGCCACCAGCTCGTGTGGGCTTTA
1 AAAA-GAAAAAGTGTCCTGCTCTTTG-AGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTTG
* * * * *
1592186 AAAAGAAAAGGTGTCTTGCTCTTTGAGGACTAAAGGGTGCTACCAACTTGTGTAGGCTTTG
1 AAAAGAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
* *
1592247 -AAAG-----GCGTCCTGCTCTTTGAGGACTAAAGGGTG
1 AAAAGAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGTG
1592280 AAATGAGAGA
Statistics
Matches: 341, Mismatches: 52, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
55 27 0.08
60 9 0.03
61 118 0.35
62 116 0.34
63 66 0.19
64 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (61 bp):
AAAAGAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
Found at i:1592041 original size:124 final size:122
Alignment explanation
Indices: 1591815--1592276 Score: 539
Period size: 124 Copynumber: 3.8 Consensus size: 122
1591805 GCAAAGGAGA
* * * * *
1591815 AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA
1 AAAAGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTCGAAAG
* * * *
1591880 GAAAAAGTGTCTTGCTCTTTGAGGACTAAAAGG-TGCCA-CTGACTTGTGTAGGCTTTG
66 GAAAAAGCGTCCTGCTCTTTGAGGACT-AAAGGATGCCACCAG-CTTGTGTGGGCTTTG
* * *
1591937 CAAAGAAAAAGGTGTCCTGCCCTTTGAGGACCAGAAAGGTGCCACCAACTTGTGTGGGCTTCGAA
1 AAAAG-AAAAGGTGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTCGAA
*
1592002 AGGAAAAAGCGTCCTGCTCTTTGAGGACTAAAGGATGCCACCAGTTTGTGTGGGCTTTG
64 AGGAAAAAGCGTCCTGCTCTTTGAGGACTAAAGGATGCCACCAGCTTGTGTGGGCTTTG
* *
1592061 AAAAGAAAAAGGTGTCCTGCTCTTTGAGGATTAGAAAGGTGCCACCAACTTGTGTGGGCTTCAAA
1 AAAAG-AAAAGGTGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTCGAA
* * * * * *
1592126 AGGAAAAGGCGTCCTACTC-TTGAAAGACTAAA-AATGTGCCACCAGCTCGTGTGGGCTTTA
64 AGGAAAAAGCGTCCTGCTCTTTG-AGGACTAAAGGA--TGCCACCAGCTTGTGTGGGCTTTG
* * * * *
1592186 AAAAGAAAAGGTGTCTTGCTCTTTGAGGACTAAAGGGTGCTACCAACTTGTGTAGGCTTTGAAA-
1 AAAAGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTCGAAAG
1592250 G-----GCGTCCTGCTCTTTGAGGACTAAAGG
66 GAAAAAGCGTCCTGCTCTTTGAGGACTAAAGG
1592277 GTGAAATGAG
Statistics
Matches: 296, Mismatches: 35, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
117 18 0.06
118 3 0.01
122 5 0.02
123 60 0.20
124 182 0.61
125 28 0.09
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (122 bp):
AAAAGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTCGAAAG
GAAAAAGCGTCCTGCTCTTTGAGGACTAAAGGATGCCACCAGCTTGTGTGGGCTTTG
Found at i:1592393 original size:61 final size:61
Alignment explanation
Indices: 1592298--1592493 Score: 281
Period size: 61 Copynumber: 3.2 Consensus size: 61
1592288 GAGTGTTCTA
1592298 CTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTG
1 CTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTG
* *
1592359 CTCTTTGAGGACT-GGAAGGTACCACCAACTTGTGTGGGTTTTAAAAGGA-AAAG-ATGTCCTG
1 CTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCA--TCCTG
* * * * *
1592420 TTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTG
1 CTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTG
1592481 CTCTTTGAGGACT
1 CTCTTTGAGGACT
1592494 GAAAAGTGAA
Statistics
Matches: 119, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
59 1 0.01
60 8 0.07
61 103 0.87
62 7 0.06
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (61 bp):
CTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTG
Found at i:1592415 original size:731 final size:731
Alignment explanation
Indices: 1591014--1592488 Score: 2905
Period size: 731 Copynumber: 2.0 Consensus size: 731
1591004 AAAAAAAGCA
1591014 TCCTGCTCTTTGAAGATAAAAGGGAAAAGAAGGAAATGAAATGTGTCATGCTCTTTGAGGGCAAA
1 TCCTGCTCTTTGAAGATAAAAGGGAAAAGAAGGAAATGAAATGTGTCATGCTCTTTGAGGGCAAA
1591079 GGAGAAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT
66 GGAGAAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT
1591144 GAAAAGAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACTGACTTGTGTAGGCTTTGCAA
131 GAAAAGAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACTGACTTGTGTAGGCTTTGCAA
1591209 AGAAAAAGGTGTCCTGCCCTTTGAGGACCAGAAAGGTGCCACCAACTTGTGTGGGCTTCGAAAGG
196 AGAAAAAGGTGTCCTGCCCTTTGAGGACCAGAAAGGTGCCACCAACTTGTGTGGGCTTCGAAAGG
*
1591274 AAAAGGCGTCCTGCTCTTTGAGGACTAAAGGATGCCACCAGTTTGTGTGGGCTTTGAAAAGAAAA
261 AAAAAGCGTCCTGCTCTTTGAGGACTAAAGGATGCCACCAGTTTGTGTGGGCTTTGAAAAGAAAA
1591339 AGGTGTCCTGCTCTTTGAGGATTAGAAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGGAAAAGG
326 AGGTGTCCTGCTCTTTGAGGATTAGAAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGGAAAAGG
*
1591404 CGTCCTACTCTTGAAAGACTAAATATGTGCCACCAGCTCGTGTGGGCTTTAAAAAGAAAAGGTGT
391 CGTCCTACTCTTGAAAGACTAAAAATGTGCCACCAGCTCGTGTGGGCTTTAAAAAGAAAAGGTGT
1591469 CTTGCTCTTTGAGGACTAAAGGGTGCTACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTT
456 CTTGCTCTTTGAGGACTAAAGGGTGCTACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTT
1591534 GAGGACTAAAGGGTGAAATGAGAGAGTGTTCTACTCTTTGAGGACTAGGAAGTGCCACCAACTTG
521 GAGGACTAAAGGGTGAAATGAGAGAGTGTTCTACTCTTTGAGGACTAGGAAGTGCCACCAACTTG
*
1591599 TGTGGGCTTTAAAAGGAGAAAGCATCTTGCTCTTTGAGGACTGGAAGGTACCACCAACTTGTGTG
586 TGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGTACCACCAACTTGTGTG
1591664 GGCTTTAAAAGGAAAAGATGTCCTGTTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGCT
651 GGCTTTAAAAGGAAAAGATGTCCTGTTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGCT
1591729 TTAAAAGGAGAAGGCG
716 TTAAAAGGAGAAGGCG
1591745 TCCTGCTCTTTGAAGATAAAAGGGAAAAGAAGGAAATGAAATGTGTCATGCTCTTTGAGGGCAAA
1 TCCTGCTCTTTGAAGATAAAAGGGAAAAGAAGGAAATGAAATGTGTCATGCTCTTTGAGGGCAAA
1591810 GGAGAAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT
66 GGAGAAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT
*
1591875 GAAAAGAAAAAGTGTCTTGCTCTTTGAGGACTAAAAGGTGCCACTGACTTGTGTAGGCTTTGCAA
131 GAAAAGAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACTGACTTGTGTAGGCTTTGCAA
1591940 AGAAAAAGGTGTCCTGCCCTTTGAGGACCAGAAAGGTGCCACCAACTTGTGTGGGCTTCGAAAGG
196 AGAAAAAGGTGTCCTGCCCTTTGAGGACCAGAAAGGTGCCACCAACTTGTGTGGGCTTCGAAAGG
1592005 AAAAAGCGTCCTGCTCTTTGAGGACTAAAGGATGCCACCAGTTTGTGTGGGCTTTGAAAAGAAAA
261 AAAAAGCGTCCTGCTCTTTGAGGACTAAAGGATGCCACCAGTTTGTGTGGGCTTTGAAAAGAAAA
1592070 AGGTGTCCTGCTCTTTGAGGATTAGAAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGGAAAAGG
326 AGGTGTCCTGCTCTTTGAGGATTAGAAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGGAAAAGG
1592135 CGTCCTACTCTTGAAAGACTAAAAATGTGCCACCAGCTCGTGTGGGCTTTAAAAAGAAAAGGTGT
391 CGTCCTACTCTTGAAAGACTAAAAATGTGCCACCAGCTCGTGTGGGCTTTAAAAAGAAAAGGTGT
1592200 CTTGCTCTTTGAGGACTAAAGGGTGCTACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTT
456 CTTGCTCTTTGAGGACTAAAGGGTGCTACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTT
1592265 GAGGACTAAAGGGTGAAATGAGAGAGTGTTCTACTCTTTGAGGACTAGGAAGTGCCACCAACTTG
521 GAGGACTAAAGGGTGAAATGAGAGAGTGTTCTACTCTTTGAGGACTAGGAAGTGCCACCAACTTG
1592330 TGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGTACCACCAACTTGTGTG
586 TGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGTACCACCAACTTGTGTG
*
1592395 GGTTTTAAAAGGAAAAGATGTCCTGTTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGCT
651 GGCTTTAAAAGGAAAAGATGTCCTGTTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGCT
1592460 TTAAAAGGAGAAGGCG
716 TTAAAAGGAGAAGGCG
1592476 TCCTGCTCTTTGA
1 TCCTGCTCTTTGA
1592489 GGACTGAAAA
Statistics
Matches: 739, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
731 739 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (731 bp):
TCCTGCTCTTTGAAGATAAAAGGGAAAAGAAGGAAATGAAATGTGTCATGCTCTTTGAGGGCAAA
GGAGAAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT
GAAAAGAAAAAGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACTGACTTGTGTAGGCTTTGCAA
AGAAAAAGGTGTCCTGCCCTTTGAGGACCAGAAAGGTGCCACCAACTTGTGTGGGCTTCGAAAGG
AAAAAGCGTCCTGCTCTTTGAGGACTAAAGGATGCCACCAGTTTGTGTGGGCTTTGAAAAGAAAA
AGGTGTCCTGCTCTTTGAGGATTAGAAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGGAAAAGG
CGTCCTACTCTTGAAAGACTAAAAATGTGCCACCAGCTCGTGTGGGCTTTAAAAAGAAAAGGTGT
CTTGCTCTTTGAGGACTAAAGGGTGCTACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTT
GAGGACTAAAGGGTGAAATGAGAGAGTGTTCTACTCTTTGAGGACTAGGAAGTGCCACCAACTTG
TGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGTACCACCAACTTGTGTG
GGCTTTAAAAGGAAAAGATGTCCTGTTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGCT
TTAAAAGGAGAAGGCG
Found at i:1593499 original size:15 final size:14
Alignment explanation
Indices: 1593465--1593514 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 14
1593455 CTTAAGCAGG
1593465 TTTTTTCTTT-TCTCT
1 TTTTTTCTTTGT-T-T
1593480 TTTTTTCTTTGTTT
1 TTTTTTCTTTGTTT
*
1593494 TGTTTTTTTTTGTTT
1 T-TTTTTCTTTGTTT
1593509 TTTTTT
1 TTTTTT
1593515 TTTAAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
14 7 0.22
15 24 0.75
16 1 0.03
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (14 bp):
TTTTTTCTTTGTTT
Found at i:1593515 original size:15 final size:15
Alignment explanation
Indices: 1593479--1593517 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
1593469 TTCTTTTCTC
*
1593479 TTTTTTTCTTTGTTT
1 TTTTTTTTTTTGTTT
*
1593494 TGTTTTTTTTTGTTT
1 TTTTTTTTTTTGTTT
1593509 TTTTTTTTT
1 TTTTTTTTT
1593518 AAAAAAAGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTTTGTTT
Found at i:1606033 original size:79 final size:78
Alignment explanation
Indices: 1605928--1606146 Score: 226
Period size: 79 Copynumber: 2.8 Consensus size: 78
1605918 ACAACGGGGC
* * *
1605928 TAGAGTATCCCCGATTGTGGAAAATCGGTGTTTTGGAAATAAAATCAGGGTTGAAGTATTCCTTC
1 TAGAGTATCCCCGATTGT-GAAAATCGGTGTTTTGGAAATAAAATCAGGGTTGGAGTATCCCCTC
1605993 AGAAA-TAACAGGGT
65 -GAAAGTAACAGGGT
* * * **** * *
1606007 TAGAGTATTCCTGATTATAGAAAATCGACACTTTGAAAATAAAATCGGGGTTGGAGTATCCCCTC
1 TAGAGTATCCCCGATTGT-GAAAATCGGTGTTTTGGAAATAAAATCAGGGTTGGAGTATCCCCTC
*
1606072 GAAAGTAACGGGGT
65 GAAAGTAACAGGGT
* ** *
1606086 TGGAGTATCCCCGATTGTGAAAAATTTGTGTTTTAGAAATAAAAT-AGGGGTTGGAGTATCC
1 TAGAGTATCCCCGATTGTG-AAAATCGGTGTTTTGGAAATAAAATCA-GGGTTGGAGTATCC
1606147 TCGATTGTGA
Statistics
Matches: 110, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
78 5 0.05
79 105 0.95
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (78 bp):
TAGAGTATCCCCGATTGTGAAAATCGGTGTTTTGGAAATAAAATCAGGGTTGGAGTATCCCCTCG
AAAGTAACAGGGT
Found at i:1606144 original size:130 final size:132
Alignment explanation
Indices: 1606003--1606275 Score: 360
Period size: 130 Copynumber: 2.1 Consensus size: 132
1605993 AGAAATAACA
* *
1606003 GGGTTAGAGTATTCCT-GATTAT-AGAAAATCGACACTTTGA-AAATAAAATCGGGGTTGGAGTA
1 GGGTTGGAGTATTCCTCGATTATGAG-AAATCAACA-TTTGAGAAATAAAATCGGGGTTGGAGTA
* *
1606065 TCCCCTC-GAAAGTAACGGGGTTGGAGTATCCCCGATTGTGAAAA-ATTTGTGTTTTAGAAATAA
64 TCCCCTCAGAAA-TAACGGGATTGGAGTATCCCCGATTGTGAAAAGATTGGTGTTTTAGAAATAA
1606128 AATAG
128 AATAG
* * * *
1606133 GGGTTGGAGTA-TCCTCGATTGTGAGAAATCAATATTTTAGAAATAAAGTCGGGGTTGGAGTATC
1 GGGTTGGAGTATTCCTCGATTATGAGAAATCAACATTTGAGAAATAAAATCGGGGTTGGAGTATC
* * *
1606197 TCTTCAGAAATAACGGGATTGGAGTGTCCCCGATTGTGAAAAGATTGGTGTTTTAGAAATAAAAT
66 CCCTCAGAAATAACGGGATTGGAGTATCCCCGATTGTGAAAAGATTGGTGTTTTAGAAATAAAAT
*
1606262 TG
131 AG
*
1606264 GGGTTGAAGTAT
1 GGGTTGGAGTAT
1606276 CCCCGATAAT
Statistics
Matches: 124, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
129 8 0.06
130 78 0.63
131 38 0.31
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (132 bp):
GGGTTGGAGTATTCCTCGATTATGAGAAATCAACATTTGAGAAATAAAATCGGGGTTGGAGTATC
CCCTCAGAAATAACGGGATTGGAGTATCCCCGATTGTGAAAAGATTGGTGTTTTAGAAATAAAAT
AG
Found at i:1606171 original size:51 final size:51
Alignment explanation
Indices: 1606081--1606196 Score: 160
Period size: 51 Copynumber: 2.3 Consensus size: 51
1606071 CGAAAGTAAC
*** *
1606081 GGGGTTGGAGTATCCCCGATTGTGAAAAATTTGTGTTTTAGAAATAAAATA
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAATA
* * * *
1606132 GGGGTTGGAGTATCCTCGATTGTGAGAAATCAATATTTTAGAAATAAAGTC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAATA
1606183 GGGGTTGGAGTATC
1 GGGGTTGGAGTATC
1606197 TCTTCAGAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (51 bp):
GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAATA
Found at i:1606219 original size:79 final size:77
Alignment explanation
Indices: 1606131--1606355 Score: 229
Period size: 77 Copynumber: 2.9 Consensus size: 77
1606121 GAAATAAAAT
* * * * * *
1606131 AGGGGTTGGAGTATCCTCGATTGTGAGAAATCAATATTTTAGAAATAAAGTCGGGGTTGGAGTAT
1 AGGGATTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGGAGTAT
1606196 CTCTTCAGA-AATAA
66 C-C--CAGATAATAA
* * * * * *
1606210 CGGGATTGGAGTGTCCCCGATTGTGAAAAGATTGGTGTTTTAGAAATAAAATTGGGGTTGAAGTA
1 AGGGATTGGAGTATCCCCGATTGTGAAAA-ATCGATGTTTTAGAAATAAAATCGGGGTTGGAGTA
*
1606275 TCCCCGATAATAA
65 TCCCAGATAATAA
* * * * *
1606288 AGGGATTAGAGTATCCCCGATTATGAAAAATGGATGTTTT-GAAAATAAAACCGGAGTTGGAGTA
1 AGGGATTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTAG-AAATAAAATCGGGGTTGGAGTA
1606352 TCCC
65 TCCC
1606356 CGAGATGAAA
Statistics
Matches: 120, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
76 1 0.01
77 34 0.28
78 30 0.25
79 25 0.21
80 30 0.25
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.29
Consensus pattern (77 bp):
AGGGATTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGGAGTAT
CCCAGATAATAA
Found at i:1608657 original size:18 final size:18
Alignment explanation
Indices: 1608611--1608666 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
1608601 ATGCAAGAGC
1608611 AGGAAAATGGCTCGAAGT
1 AGGAAAATGGCTCGAAGT
*
1608629 -GGTCAAAAATGCCTCGAAGT
1 AGG---AAAATGGCTCGAAGT
1608649 AGGAAAATGGCTCGAAGT
1 AGGAAAATGGCTCGAAGT
1608667 GTTAAAACCC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
17 2 0.06
18 14 0.44
20 14 0.44
21 2 0.06
ACGTcount: A:0.38, C:0.14, G:0.30, T:0.18
Consensus pattern (18 bp):
AGGAAAATGGCTCGAAGT
Found at i:1608673 original size:18 final size:19
Alignment explanation
Indices: 1608614--1608666 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
1608604 CAAGAGCAGG
*
1608614 AAAATGGCTCGAAGTGGTCA
1 AAAATGGCTCGAAGTAGT-A
* *
1608634 AAAATGCCTCGAAGTAG-G
1 AAAATGGCTCGAAGTAGTA
1608652 AAAATGGCTCGAAGT
1 AAAATGGCTCGAAGT
1608667 GTTAAAACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 14 0.48
20 15 0.52
ACGTcount: A:0.38, C:0.15, G:0.28, T:0.19
Consensus pattern (19 bp):
AAAATGGCTCGAAGTAGTA
Found at i:1609269 original size:19 final size:20
Alignment explanation
Indices: 1609245--1609298 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 20
1609235 AGGGTAGTTT
1609245 TGTATCAATACAAAACT-TG
1 TGTATCAATACAAAACTGTG
* ** *
1609264 TGTATCGATACATTTACTGTT
1 TGTATCAATACA-AAACTGTG
1609285 TGTATCAATACAAA
1 TGTATCAATACAAA
1609299 TTGTAGAAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
19 11 0.42
20 3 0.12
21 12 0.46
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (20 bp):
TGTATCAATACAAAACTGTG
Found at i:1611465 original size:13 final size:13
Alignment explanation
Indices: 1611447--1611471 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1611437 CATAAAGTGT
1611447 TGTATCGATACAA
1 TGTATCGATACAA
1611460 TGTATCGATACA
1 TGTATCGATACA
1611472 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1611482 original size:32 final size:32
Alignment explanation
Indices: 1611427--1611527 Score: 166
Period size: 32 Copynumber: 3.1 Consensus size: 32
1611417 TTCAATGATT
1611427 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
1611460 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* * *
1611492 TGTATCAATAGATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1611524 TGTA
1 TGTA
1611528 AGCTATTGCC
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 52 0.80
33 13 0.20
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1611583 original size:13 final size:13
Alignment explanation
Indices: 1611565--1611589 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1611555 ATTACTCAAA
1611565 TGTATCGATACAT
1 TGTATCGATACAT
1611578 TGTATCGATACA
1 TGTATCGATACA
1611590 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1611642 original size:52 final size:52
Alignment explanation
Indices: 1611598--1611778 Score: 335
Period size: 52 Copynumber: 3.5 Consensus size: 52
1611588 CACTGATCTT
* *
1611598 TGTATCGATACATGCAGGCAAGTTTGCCTAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1611650 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1611702 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1611754 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1611779 TCCATATTTC
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 126 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1623568 original size:33 final size:33
Alignment explanation
Indices: 1623531--1623597 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1623521 TTCAACGATT
1623531 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1623564 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1623597 T
1 T
1623598 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1623569 original size:13 final size:13
Alignment explanation
Indices: 1623551--1623575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1623541 CATAAAATGT
1623551 TGTATCGATACAA
1 TGTATCGATACAA
1623564 TGTATCGATACA
1 TGTATCGATACA
1623576 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1623659 original size:13 final size:13
Alignment explanation
Indices: 1623641--1623665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1623631 ATTACTCAAA
1623641 TGTATCGATACAT
1 TGTATCGATACAT
1623654 TGTATCGATACA
1 TGTATCGATACA
1623666 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1623767 original size:52 final size:52
Alignment explanation
Indices: 1623674--1623801 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
1623664 CACTGATCTT
*
1623674 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
1623725 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1623777 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1623802 TCATATTTCG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 19 0.26
52 52 0.70
53 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:1630757 original size:14 final size:14
Alignment explanation
Indices: 1630740--1630766 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1630730 AGTCAAAAAA
1630740 AAAAAAAAAAACAC
1 AAAAAAAAAAACAC
1630754 AAAAAAAAAAACA
1 AAAAAAAAAAACA
1630767 GAAGAAAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAACAC
Found at i:1631043 original size:15 final size:15
Alignment explanation
Indices: 1631013--1631056 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
1631003 TTTCTTTTCC
*
1631013 AAACACAAAA-AAAA
1 AAACAAAAAAGAAAA
*
1631027 AAAGAAAAAAGAAAA
1 AAACAAAAAAGAAAA
*
1631042 AAACAAAACAGAAAA
1 AAACAAAAAAGAAAA
1631057 TCTCGATGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 8 0.32
15 17 0.68
ACGTcount: A:0.84, C:0.09, G:0.07, T:0.00
Consensus pattern (15 bp):
AAACAAAAAAGAAAA
Found at i:1632105 original size:30 final size:31
Alignment explanation
Indices: 1632069--1632150 Score: 112
Period size: 30 Copynumber: 2.7 Consensus size: 31
1632059 ATACCTTTTT
1632069 AAAGTCCACGACTCAGTGGCATTTTGTC-TC
1 AAAGTCCACGACTCAGTGGCATTTTGTCTTC
* *
1632099 AAAGTCCACGACTCAGTGGCATTTTTTCTTT
1 AAAGTCCACGACTCAGTGGCATTTTGTCTTC
* * *
1632130 AAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
1632151 CCTTGTCCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 27 0.59
31 19 0.41
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATTTTGTCTTC
Found at i:1632206 original size:68 final size:69
Alignment explanation
Indices: 1632097--1632262 Score: 243
Period size: 68 Copynumber: 2.4 Consensus size: 69
1632087 GCATTTTGTC
* *
1632097 TCAAAGTCCACGACTCAGTGGCA-TTTTTTCTTTAAAGCCCACAACTCCGTGGCAC-C-TTGTCC
1 TCAAAGTCCACAACTCCGTGGCACTTTTTTCTTTAAAGCCCACAACTCCGTGGCACTCTTTGTCC
1632159 CTTT
66 CTTT
* *
1632163 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TCAAAGTCCACAACTCCGTGGCACTTTTTTC-TTTAAAGCCCACAACTCCGTGGCACTCTTTGTC
1632228 CCTTT
65 CCTTT
1632233 T--AAGTCCACAACTCCGTGGCATCTTTTTTC
1 TCAAAGTCCACAACTCCGTGGCA-CTTTTTTC
1632263 CTTCCCAAAG
Statistics
Matches: 90, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
66 20 0.22
67 7 0.08
68 44 0.49
69 9 0.10
70 10 0.11
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (69 bp):
TCAAAGTCCACAACTCCGTGGCACTTTTTTCTTTAAAGCCCACAACTCCGTGGCACTCTTTGTCC
CTTT
Found at i:1632207 original size:33 final size:33
Alignment explanation
Indices: 1632065--1632262 Score: 192
Period size: 35 Copynumber: 6.0 Consensus size: 33
1632055 TCAAATACCT
* * * *
1632065 TTTTAAAGTCCACGACTCAGTGGCA-TTTTGTC
1 TTTTAAAGCCCACAACTCCGTGGCACTTTTTTC
* * * *
1632097 --TCAAAGTCCACGACTCAGTGGCA-TTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACTTTTTTC
* **
1632127 -TTTAAAGCCCACAACTCCGTGGCACCTTGTCCC
1 TTTTAAAGCCCACAACTCCGTGGCA-CTTTTTTC
1632160 TTTTCAAAGCCCACAACTCCGTGGCACTTTTTTC
1 TTTT-AAAGCCCACAACTCCGTGGCACTTTTTTC
1632194 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCACT-TTTTT--C
*
1632230 TTTT-AAGTCCACAACTCCGTGGCATCTTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCA-CTTTTTTC
1632263 CTTCCCAAAG
Statistics
Matches: 144, Mismatches: 13, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
30 28 0.19
31 19 0.13
33 28 0.19
34 17 0.12
35 45 0.31
36 7 0.05
ACGTcount: A:0.21, C:0.31, G:0.14, T:0.34
Consensus pattern (33 bp):
TTTTAAAGCCCACAACTCCGTGGCACTTTTTTC
Found at i:1632261 original size:35 final size:35
Alignment explanation
Indices: 1632099--1632263 Score: 193
Period size: 35 Copynumber: 4.9 Consensus size: 35
1632089 ATTTTGTCTC
* * *
1632099 AAAGTCCACGACTCAGTGGCA-TTTTTT--C-TTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCCCTTTT
* *
1632130 AAAGCCCACAACTCCGTGGCAC-CTTGTCCCTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCCCTTTT
1632164 CAAAGCCCACAACTCCGTGGCACTTTTTT--CTTTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCCCTTTT
1632198 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCCCTTTT
*
1632234 -AAGTCCACAACTCCGTGGCATCTTTTTTCC
1 AAAGCCCACAACTCCGTGGCA-CTTTTTTCC
1632264 TTCCCAAAGC
Statistics
Matches: 116, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
31 21 0.18
33 24 0.21
34 13 0.11
35 48 0.41
36 10 0.09
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (35 bp):
AAAGCCCACAACTCCGTGGCACTTTTTTCCCTTTT
Found at i:1632304 original size:33 final size:34
Alignment explanation
Indices: 1632267--1632332 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 34
1632257 TTTTTCCTTC
1632267 CCAAAGCCCACACAAGTCGGTGGCAA-CCTTCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACCCTTCTT
1632300 CCAAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 CCAAAGCCCACACAAGTCGGTGGCAACCCTTCT
1632333 AAGCCCAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 26 0.81
34 6 0.19
ACGTcount: A:0.27, C:0.38, G:0.18, T:0.17
Consensus pattern (34 bp):
CCAAAGCCCACACAAGTCGGTGGCAACCCTTCTT
Found at i:1632451 original size:49 final size:49
Alignment explanation
Indices: 1632332--1633076 Score: 915
Period size: 49 Copynumber: 15.7 Consensus size: 49
1632322 GCAACCCTTC
* * *
1632332 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
* *
1632384 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1632433 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1632476 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1632525 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1632568 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1632617 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
1632660 TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1632709 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1632758 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1632806 TAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1632849 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1632898 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1632946 TAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1632989 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
*
1633041 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1633077 ACATCCTTTT
Statistics
Matches: 606, Mismatches: 54, Indels: 66
0.83 0.07 0.09
Matches are distributed among these distances:
43 190 0.31
45 4 0.01
47 4 0.01
48 88 0.15
49 245 0.40
50 3 0.00
52 72 0.12
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:1632493 original size:43 final size:43
Alignment explanation
Indices: 1632430--1633032 Score: 657
Period size: 43 Copynumber: 13.1 Consensus size: 43
1632420 GCACCTTTAT
1632430 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
1632473 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
1632520 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
1632565 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
1632612 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
1632657 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCATCATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG---CA-C
*
1632704 ATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
1632753 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
*
1632803 CTTTAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1632846 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
1632893 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
*
1632943 CTTTAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1632986 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1633029 CTTT
1 CTTT
1633033 TCCATCTTTA
Statistics
Matches: 484, Mismatches: 39, Indels: 74
0.81 0.07 0.12
Matches are distributed among these distances:
43 199 0.41
45 2 0.00
46 4 0.01
47 4 0.01
48 78 0.16
49 191 0.39
50 2 0.00
54 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1632538 original size:92 final size:92
Alignment explanation
Indices: 1632381--1633032 Score: 922
Period size: 92 Copynumber: 7.0 Consensus size: 92
1632371 CCTTTTCCAT
* * * * *
1632381 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1632446 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
1632473 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1632538 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
1632565 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1632630 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
1632657 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
1632722 GCTGGCCTTGACTCAGCACATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * * *
1632753 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCACCTTTAAGCCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
1632817 TAGCTGGCCTTGAATCAGCACATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
* *
1632846 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1632911 GCTGGCCTTGAATCAGCACATTGGCACCTCAC
66 GCTGGCCTTGAATCAGCACATTGG-----CAC
* * * *
1632943 CTTTAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
* *
1633002 GCTGGCCTTGAATCAGCATATCGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
1633029 CTTT
1 CTTT
1633033 TCCATCTTTA
Statistics
Matches: 516, Mismatches: 32, Indels: 30
0.89 0.06 0.05
Matches are distributed among these distances:
86 7 0.01
91 76 0.15
92 307 0.59
93 2 0.00
96 1 0.00
97 85 0.16
98 38 0.07
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1633192 original size:175 final size:170
Alignment explanation
Indices: 1632986--1633366 Score: 412
Period size: 170 Copynumber: 2.2 Consensus size: 170
1632976 ACATTGGCAC
* * *
1632986 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATCGGCACC-TTT--ATCTTTAAGTCCAAT
* *
1633051 GTAGCTGGCCTTG-A-ATCAGCACATTGACATCCTTTTTCATCATCTTT-AAGCCCAATATCGTT
63 ATAGCTAGCC--GCATATCAGC-CATT-ACATCCTTTTTC-TCATCTTTGAA-CCCAATATCGTT
* * *
1633113 GGTCGTGAATCAACATATTGG-CATCTTTATCACTTTTC-TCATCTTCAT
122 GGCCGTGAATCAACATATTGGTCAT-TTTATCACTCTTCATCATCATCAT
* * *
1633161 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATCGGCACCTTTATCTTTAAGTCCAATATA
** * **
1633226 GCTAGCCGCATATTGGCTATTTTATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAA
66 GCTAGCCGCATATCAGCCATTACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAA
* * * *
1633291 TCAACGTATTGGTCCTTTTATCGCTCTTCATCCTCATCAT
131 TCAACATATTGGTCATTTTATCACTCTTCATCATCATCAT
* * * * *
1633331 CTTTAAGTCCAGTGTGGCAGACCTTGAATCTGCACA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
1633367 GTGGCACACT
Statistics
Matches: 176, Mismatches: 25, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
169 50 0.28
170 54 0.31
171 4 0.02
172 25 0.14
174 3 0.02
175 40 0.23
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.36
Consensus pattern (170 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATCGGCACCTTTATCTTTAAGTCCAATATA
GCTAGCCGCATATCAGCCATTACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAA
TCAACATATTGGTCATTTTATCACTCTTCATCATCATCAT
Found at i:1633973 original size:33 final size:33
Alignment explanation
Indices: 1633936--1634002 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1633926 TTCAACGATT
1633936 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1633969 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1634002 T
1 T
1634003 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1633974 original size:13 final size:13
Alignment explanation
Indices: 1633956--1633980 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1633946 CATAAAATGT
1633956 TGTATCGATACAA
1 TGTATCGATACAA
1633969 TGTATCGATACA
1 TGTATCGATACA
1633981 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1634064 original size:13 final size:13
Alignment explanation
Indices: 1634046--1634070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1634036 ATTACTCAAA
1634046 TGTATCGATACAT
1 TGTATCGATACAT
1634059 TGTATCGATACA
1 TGTATCGATACA
1634071 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1634172 original size:52 final size:52
Alignment explanation
Indices: 1634079--1634206 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
1634069 CACTGATCTT
*
1634079 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
1634130 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1634182 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1634207 TCATATTTCG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 19 0.26
52 52 0.70
53 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:1641172 original size:13 final size:12
Alignment explanation
Indices: 1641139--1641173 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
1641129 AACAAAAGTC
1641139 AAAAAAAAA-AA
1 AAAAAAAAACAA
1641150 AAAAAAAAACACA
1 AAAAAAAAACA-A
1641163 AAAAAAAAACA
1 AAAAAAAAACA
1641174 GAAGAAAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 9 0.41
12 1 0.05
13 12 0.55
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:1641449 original size:15 final size:15
Alignment explanation
Indices: 1641420--1641464 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
1641410 TTTCTTTTCC
1641420 AAACACAAAAA-AAAA
1 AAACA-AAAAAGAAAA
*
1641435 AAAGAAAAAAGAAAA
1 AAACAAAAAAGAAAA
*
1641450 AAACAAAACAGAAAA
1 AAACAAAAAAGAAAA
1641465 TCTCGATGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.84, C:0.09, G:0.07, T:0.00
Consensus pattern (15 bp):
AAACAAAAAAGAAAA
Found at i:1642511 original size:30 final size:31
Alignment explanation
Indices: 1642475--1642556 Score: 112
Period size: 30 Copynumber: 2.7 Consensus size: 31
1642465 ATACCTTTTT
1642475 AAAGTCCACGACTCAGTGGCATTTTGTC-TC
1 AAAGTCCACGACTCAGTGGCATTTTGTCTTC
* *
1642505 AAAGTCCACGACTCAGTGGCATTTTTTCTTT
1 AAAGTCCACGACTCAGTGGCATTTTGTCTTC
* * *
1642536 AAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
1642557 CCTTGTCCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 27 0.59
31 19 0.41
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATTTTGTCTTC
Found at i:1642612 original size:68 final size:69
Alignment explanation
Indices: 1642503--1642668 Score: 243
Period size: 68 Copynumber: 2.4 Consensus size: 69
1642493 GCATTTTGTC
* *
1642503 TCAAAGTCCACGACTCAGTGGCA-TTTTTTCTTTAAAGCCCACAACTCCGTGGCAC-C-TTGTCC
1 TCAAAGTCCACAACTCCGTGGCACTTTTTTCTTTAAAGCCCACAACTCCGTGGCACTCTTTGTCC
1642565 CTTT
66 CTTT
* *
1642569 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TCAAAGTCCACAACTCCGTGGCACTTTTTTC-TTTAAAGCCCACAACTCCGTGGCACTCTTTGTC
1642634 CCTTT
65 CCTTT
1642639 T--AAGTCCACAACTCCGTGGCATCTTTTTTC
1 TCAAAGTCCACAACTCCGTGGCA-CTTTTTTC
1642669 CTTCCCAAAG
Statistics
Matches: 90, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
66 20 0.22
67 7 0.08
68 44 0.49
69 9 0.10
70 10 0.11
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (69 bp):
TCAAAGTCCACAACTCCGTGGCACTTTTTTCTTTAAAGCCCACAACTCCGTGGCACTCTTTGTCC
CTTT
Found at i:1642613 original size:33 final size:33
Alignment explanation
Indices: 1642471--1642668 Score: 192
Period size: 35 Copynumber: 6.0 Consensus size: 33
1642461 TCAAATACCT
* * * *
1642471 TTTTAAAGTCCACGACTCAGTGGCA-TTTTGTC
1 TTTTAAAGCCCACAACTCCGTGGCACTTTTTTC
* * * *
1642503 --TCAAAGTCCACGACTCAGTGGCA-TTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACTTTTTTC
* **
1642533 -TTTAAAGCCCACAACTCCGTGGCACCTTGTCCC
1 TTTTAAAGCCCACAACTCCGTGGCA-CTTTTTTC
1642566 TTTTCAAAGCCCACAACTCCGTGGCACTTTTTTC
1 TTTT-AAAGCCCACAACTCCGTGGCACTTTTTTC
1642600 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCACT-TTTTT--C
*
1642636 TTTT-AAGTCCACAACTCCGTGGCATCTTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCA-CTTTTTTC
1642669 CTTCCCAAAG
Statistics
Matches: 144, Mismatches: 13, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
30 28 0.19
31 19 0.13
33 28 0.19
34 17 0.12
35 45 0.31
36 7 0.05
ACGTcount: A:0.21, C:0.31, G:0.14, T:0.34
Consensus pattern (33 bp):
TTTTAAAGCCCACAACTCCGTGGCACTTTTTTC
Found at i:1642667 original size:35 final size:35
Alignment explanation
Indices: 1642505--1642669 Score: 193
Period size: 35 Copynumber: 4.9 Consensus size: 35
1642495 ATTTTGTCTC
* * *
1642505 AAAGTCCACGACTCAGTGGCA-TTTTTT--C-TTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCCCTTTT
* *
1642536 AAAGCCCACAACTCCGTGGCAC-CTTGTCCCTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCCCTTTT
1642570 CAAAGCCCACAACTCCGTGGCACTTTTTT--CTTTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCCCTTTT
1642604 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCCCTTTT
*
1642640 -AAGTCCACAACTCCGTGGCATCTTTTTTCC
1 AAAGCCCACAACTCCGTGGCA-CTTTTTTCC
1642670 TTCCCAAAGC
Statistics
Matches: 116, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
31 21 0.18
33 24 0.21
34 13 0.11
35 48 0.41
36 10 0.09
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (35 bp):
AAAGCCCACAACTCCGTGGCACTTTTTTCCCTTTT
Found at i:1642824 original size:49 final size:49
Alignment explanation
Indices: 1642705--1643449 Score: 908
Period size: 49 Copynumber: 15.7 Consensus size: 49
1642695 GCAACCCTTC
* * *
1642705 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
*
1642757 TAAGTCCAATGTAGCTGGCCTT-AACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAA-TCAGCACATTGGCACCTTCATCTT
1642806 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1642849 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1642898 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1642941 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1642990 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
1643033 TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1643082 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1643131 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1643179 TAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1643222 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1643271 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1643319 TAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1643362 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
*
1643414 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1643450 ACATCCTTTT
Statistics
Matches: 606, Mismatches: 52, Indels: 70
0.83 0.07 0.10
Matches are distributed among these distances:
43 190 0.31
45 4 0.01
47 4 0.01
48 88 0.15
49 243 0.40
50 5 0.01
51 2 0.00
52 70 0.12
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:1642866 original size:43 final size:43
Alignment explanation
Indices: 1642803--1643405 Score: 657
Period size: 43 Copynumber: 13.1 Consensus size: 43
1642793 GCACCTTTAT
1642803 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
1642846 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
1642893 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
1642938 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
1642985 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
1643030 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCATCATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG---CA-C
*
1643077 ATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
1643126 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
*
1643176 CTTTAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1643219 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
1643266 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
*
1643316 CTTTAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1643359 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1643402 CTTT
1 CTTT
1643406 TCCATCTTTA
Statistics
Matches: 484, Mismatches: 39, Indels: 74
0.81 0.07 0.12
Matches are distributed among these distances:
43 199 0.41
45 2 0.00
46 4 0.01
47 4 0.01
48 78 0.16
49 191 0.39
50 2 0.00
54 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1642911 original size:92 final size:92
Alignment explanation
Indices: 1642754--1643405 Score: 915
Period size: 92 Copynumber: 7.0 Consensus size: 92
1642744 CCTTTTCCAT
* * * *
1642754 CTTTAAGTCCAATGTAGCTGGCCTT-AACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGT
1 CTTTAAGTCCAATATAGCTGGCCTTGAA-TCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1642818 AGCTGGCCTTGAATCAGCACATTGGCAC
65 AGCTGGCCTTGAATCAGCACATTGGCAC
* *
1642846 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1642911 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
1642938 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1643003 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
1643030 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
1643095 GCTGGCCTTGACTCAGCACATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * * *
1643126 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCACCTTTAAGCCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
1643190 TAGCTGGCCTTGAATCAGCACATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
* *
1643219 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1643284 GCTGGCCTTGAATCAGCACATTGGCACCTCAC
66 GCTGGCCTTGAATCAGCACATTGG-----CAC
* * * *
1643316 CTTTAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
* *
1643375 GCTGGCCTTGAATCAGCATATCGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
1643402 CTTT
1 CTTT
1643406 TCCATCTTTA
Statistics
Matches: 516, Mismatches: 31, Indels: 32
0.89 0.05 0.06
Matches are distributed among these distances:
86 7 0.01
91 76 0.15
92 305 0.59
93 4 0.01
96 1 0.00
97 85 0.16
98 38 0.07
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1643565 original size:175 final size:170
Alignment explanation
Indices: 1643359--1643739 Score: 430
Period size: 170 Copynumber: 2.2 Consensus size: 170
1643349 ACATTGGCAC
* * *
1643359 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATCGGCACC-TTT--ATCTTTAAGTCCAAT
* *
1643424 GTAGCTGGCCTTG-A-ATCAGCACATTGACATCCTTTTTCATCATCTTT-AAGCCCAATATCGTT
63 ATAGCTAGCC--GCATATCAGC-CATT-ACATCCTTTTTC-TCATCTTTGAA-CCCAATATCGTT
* *
1643486 GGCCGTGAATCAACATATTGG-CATCTTTATCACTTTTC-TCATCTTCAT
122 GGCCGTGAATCAACATATTGGTCAT-TTTATCACTCTTCATCATCATCAT
* * *
1643534 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATCGGCACCTTTATCTTTAAGTCCAATATA
** * **
1643599 GCTAGCCGCATATTGGCTATTTTATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAA
66 GCTAGCCGCATATCAGCCATTACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAA
* * * *
1643664 TCAACGTATTGGTCCTTTTATCGCTCTTCATCCTCATCAT
131 TCAACATATTGGTCATTTTATCACTCTTCATCATCATCAT
* * * *
1643704 CTTTAAGTCCAGTGTGGCAGGCCTTGAATCTGCACA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
1643740 GTGGCACACT
Statistics
Matches: 178, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
169 51 0.29
170 55 0.31
171 4 0.02
172 25 0.14
174 3 0.02
175 40 0.22
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (170 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATCGGCACCTTTATCTTTAAGTCCAATATA
GCTAGCCGCATATCAGCCATTACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAA
TCAACATATTGGTCATTTTATCACTCTTCATCATCATCAT
Found at i:1644346 original size:33 final size:33
Alignment explanation
Indices: 1644309--1644375 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1644299 TTCAACGATT
1644309 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1644342 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1644375 T
1 T
1644376 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1644347 original size:13 final size:13
Alignment explanation
Indices: 1644329--1644353 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1644319 CATAAAATGT
1644329 TGTATCGATACAA
1 TGTATCGATACAA
1644342 TGTATCGATACA
1 TGTATCGATACA
1644354 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1644437 original size:13 final size:13
Alignment explanation
Indices: 1644419--1644443 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1644409 ATTACTCAAA
1644419 TGTATCGATACAT
1 TGTATCGATACAT
1644432 TGTATCGATACA
1 TGTATCGATACA
1644444 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1644545 original size:52 final size:52
Alignment explanation
Indices: 1644452--1644579 Score: 233
Period size: 52 Copynumber: 2.5 Consensus size: 52
1644442 CACTGATCTT
1644452 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACATT-TTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATT-AAA
1644503 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATTAAA
1644555 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1644580 TCATATTTCG
Statistics
Matches: 75, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
51 19 0.25
52 54 0.72
53 2 0.03
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATTAAA
Found at i:1649272 original size:29 final size:29
Alignment explanation
Indices: 1649231--1649652 Score: 509
Period size: 29 Copynumber: 14.5 Consensus size: 29
1649221 TCACCCTTCA
1649231 AAAGCCCACAAGTCAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
1649260 AAAGCCCATAAGTCAGTGGCAAC--CTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* *
1649287 AAAAGCCCACAAGTCAATGGCATCTTTTCC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTC
* *
1649317 AAAGCCCACAAATCAGTGGTATC-TTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* *
1649345 AAAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 -AAAGCCCACAAGTCAGTGGCA-TCTTTTTC
*
1649376 AAAGCCCACAAGTCAGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
1649405 AAAGCCCACAAGTCAGTGGCATC-TTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
*
1649433 AAAAGCCCACAAGTCAGTGGCACCTTTTTCC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTT-C
*
1649464 AAAGCCCACAAGTCAGTGGTATC-TTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
*
1649492 AAAAGCCCACAAGTCAGTGGCATCTTTTCC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTC
*
1649522 AAAGCCCACAAGTCAGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
*
1649551 AAAGCCCACAAGTCAGTGGCACCCTTTTTC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTTC
* * *
1649581 AAAGCCCACAAGTCAATGGTATC-TCTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * * *
1649609 AAAAACCCACAAGTTAGTGGCAAC--CTTC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTC
1649637 AAAAGCCCACAAGTCA
1 -AAAGCCCACAAGTCA
1649653 ATGGAAACCT
Statistics
Matches: 344, Mismatches: 36, Indels: 27
0.85 0.09 0.07
Matches are distributed among these distances:
27 3 0.01
28 51 0.15
29 207 0.60
30 78 0.23
31 5 0.01
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTTC
Found at i:1649413 original size:88 final size:88
Alignment explanation
Indices: 1649231--1649652 Score: 606
Period size: 88 Copynumber: 4.8 Consensus size: 88
1649221 TCACCCTTCA
* *
1649231 AAAGCCCACAAGTCAGTGGCATCTTTTTC-AAAGCCCATAAGTCAGTGGCAACC--TTCAAAAGC
1 AAAGCCCACAAGTCAGTGGCATC-TTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTTCCAAAGC
*
1649293 CCACAAGTCAATGGCATCTTTTCC
65 CCACAAGTCAGTGGCATCTTTTCC
* * *
1649317 AAAGCCCACAAATCAGTGGTATCTTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTTCCAAAGCC
1649382 CACAAGTCAGTGGCATCTTTTCC
66 CACAAGTCAGTGGCATCTTTTCC
1649405 AAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGC-ACCTTTTTCCAAAGC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAACC-TTTTCCAAAGC
* *
1649469 CCACAAGTCAGTGGTATCTTTTCA
65 CCACAAGTCAGTGGCATCTTTTCC
* *
1649493 AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGC-ATCTTTTCCAAAGCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTTCCAAAGCC
* *
1649557 CACAAGTCAGTGGCACCCTTTTTC
66 CACAAGTCAGTGGCA-TCTTTTCC
* * * * * *
1649581 AAAGCCCACAAGTCAATGGTATCTCTTCAAAAACCCACAAGTTAGTGGCAACC--TTCAAAAGCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTTCCAAAGCC
1649644 CACAAGTCA
66 CACAAGTCA
1649653 ATGGAAACCT
Statistics
Matches: 305, Mismatches: 25, Indels: 11
0.89 0.07 0.03
Matches are distributed among these distances:
85 5 0.02
86 43 0.14
87 46 0.15
88 209 0.69
89 2 0.01
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (88 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTTCCAAAGCC
CACAAGTCAGTGGCATCTTTTCC
Found at i:1649438 original size:117 final size:116
Alignment explanation
Indices: 1649227--1649652 Score: 597
Period size: 117 Copynumber: 3.7 Consensus size: 116
1649217 TTCCTCACCC
*
1649227 TTCAAAAGCCCACAAGTCAGTGGCATCTTTTTC-AAAGCCCATAAGTCAGTGGCAACCTTCAAAA
1 TTCAAAAGCCCACAAGTCAGTGGCATC-TTTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAA
* * * *
1649291 GCCCACAAGTCAATGGCATCTTTTCCAAAGCCCACAAATCAGTGGTATC-TT
65 GCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCTTT
* * * * *
1649342 TTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCATCTTTTCCAA
1 TTCAAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAAGCCCACAAGTCAGTGGCAAC-CTTCAAA
*
1649407 AGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCACCTTT
64 AGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCTTT
* * * * *
1649460 TTCCAAAGCCCACAAGTCAGTGGTATCTTTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCCAAA
1 TTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAAC-CTTCAAAA
1649525 GCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCCTTT
65 GCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCA-CCTTT
* * * * *
1649578 TTC-AAAGCCCACAAGTCAATGGTATCTCTTCAAAAACCCACAAGTTAGTGGCAACCTTCAAAAG
1 TTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAAG
1649642 CCCACAAGTCA
66 CCCACAAGTCA
1649653 ATGGAAACCT
Statistics
Matches: 284, Mismatches: 22, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
115 30 0.11
116 40 0.14
117 181 0.64
118 33 0.12
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (116 bp):
TTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAAG
CCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCTTT
Found at i:1649778 original size:43 final size:43
Alignment explanation
Indices: 1649724--1650186 Score: 521
Period size: 43 Copynumber: 10.1 Consensus size: 43
1649714 GGCATCTTCT
*
1649724 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC
* *
1649767 TTTAAGTCCAATATAGCTGGCCTTGAGTCAGCATATTGGCACTTTTTCCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-------C--C
* *
1649819 TTTAAGTCCAATGTAGCTGGCCTTGAATCAACACATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC
* *
1649862 TTTAAGTCCAATATAGCTGGCCTTGAGTCAGCATATTGGCACTTTTTCCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-------C--C
* *
1649914 TTTGAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC
*
1649957 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C--C
*
1650006 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC
*
1650049 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C--C
*
1650098 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC
* *
1650141 TTTAAGTCCAATATAGCTGGCCTTGAATCACCATATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC
1650184 TTT
1 TTT
1650187 TCCATCTTTA
Statistics
Matches: 363, Mismatches: 27, Indels: 60
0.81 0.06 0.13
Matches are distributed among these distances:
43 199 0.55
45 4 0.01
47 2 0.01
49 80 0.22
50 2 0.01
52 76 0.21
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (43 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC
Found at i:1649841 original size:95 final size:94
Alignment explanation
Indices: 1649724--1650239 Score: 851
Period size: 95 Copynumber: 5.5 Consensus size: 94
1649714 GGCATCTTCT
* *
1649724 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCC
*
1649789 TTGAGTCAGCATATTGGCACTTTTTCCATC
66 TTGAATCAGCATATTGGCAC-TTTTCCATC
*
1649819 TTTAAGTCCAATGTAGCTGGCCTTGAATCAACACATTGGCACCTTTAAGTCCAATATAGCTGGCC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCC
*
1649884 TTGAGTCAGCATATTGGCACTTTTTCCATC
66 TTGAATCAGCATATTGGCAC-TTTTCCATC
*
1649914 TTTGAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCC
* *
1649979 TTGAATCAGCATATTGGCAC-CTT-CTTC
66 TTGAATCAGCATATTGGCACTTTTCCATC
1650006 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCC
* *
1650071 TTGAATCAGCATATTGGCAC-CTT-CTTC
66 TTGAATCAGCATATTGGCACTTTTCCATC
1650098 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCC
*
1650163 TTGAATCACCATATTGGCACCTTTTCCATC
66 TTGAATCAGCATATTGGCA-CTTTTCCATC
* *
1650193 TTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTT
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
1650240 TTCTCATCTT
Statistics
Matches: 403, Mismatches: 14, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
92 177 0.44
93 3 0.01
94 2 0.00
95 216 0.54
96 5 0.01
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (94 bp):
TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCC
TTGAATCAGCATATTGGCACTTTTCCATC
Found at i:1649885 original size:22 final size:22
Alignment explanation
Indices: 1649818--1649885 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
1649808 CTTTTTCCAT
*
1649818 CTTTAAGTCCAATGTAGCTGGC
1 CTTTAAGTCCAATATAGCTGGC
* * * *
1649840 CTTGAA-T-CAACACA-TTGGCAC
1 CTTTAAGTCCAATATAGCTGG--C
1649861 CTTTAAGTCCAATATAGCTGGC
1 CTTTAAGTCCAATATAGCTGGC
1649883 CTT
1 CTT
1649886 GAGTCAGCAT
Statistics
Matches: 32, Mismatches: 9, Indels: 10
0.63 0.18 0.20
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 7 0.22
22 10 0.31
23 5 0.16
24 3 0.09
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (22 bp):
CTTTAAGTCCAATATAGCTGGC
Found at i:1650958 original size:13 final size:13
Alignment explanation
Indices: 1650940--1650994 Score: 56
Period size: 13 Copynumber: 3.8 Consensus size: 13
1650930 CATAAAGTGT
1650940 TGTATCGATACAA
1 TGTATCGATACAA
1650953 TGTATCGATACATAA
1 TGTATCGATAC--AA
1650968 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
1650985 TGTATCGATA
1 TGTATCGATA
1650995 GATAAGTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
13 21 0.58
15 2 0.06
17 2 0.06
19 11 0.31
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1650975 original size:32 final size:32
Alignment explanation
Indices: 1650920--1651020 Score: 175
Period size: 32 Copynumber: 3.1 Consensus size: 32
1650910 TTTAATGATT
1650920 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
1650953 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* *
1650985 TGTATCGATAGATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1651017 TGTA
1 TGTA
1651021 AGCTACTGCC
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 53 0.80
33 13 0.20
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1650977 original size:19 final size:18
Alignment explanation
Indices: 1650918--1651015 Score: 81
Period size: 19 Copynumber: 5.8 Consensus size: 18
1650908 ATTTTAATGA
1650918 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
1650937 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
1650953 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1650969 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
*
1650985 --TGTATCGATAGATAAG
1 TTTGTATCGATACATAAG
1651001 TTTTGTATCGATACA
1 -TTTGTATCGATACA
1651016 ATGTAAGCTA
Statistics
Matches: 64, Mismatches: 2, Indels: 26
0.70 0.02 0.28
Matches are distributed among these distances:
13 21 0.33
15 4 0.06
17 4 0.06
19 23 0.36
20 12 0.19
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:1651076 original size:13 final size:13
Alignment explanation
Indices: 1651058--1651082 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1651048 ATTACTCAAA
1651058 TGTATCGATACAT
1 TGTATCGATACAT
1651071 TGTATCGATACA
1 TGTATCGATACA
1651083 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1651135 original size:52 final size:52
Alignment explanation
Indices: 1651091--1651271 Score: 335
Period size: 52 Copynumber: 3.5 Consensus size: 52
1651081 CACTGATCTT
* *
1651091 TGTATCGATACATGCAGGCAAGTTTGCCCAAATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1651143 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1651195 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1651247 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1651272 TCATATTTCG
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 126 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1657989 original size:17 final size:17
Alignment explanation
Indices: 1657956--1657987 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
1657946 CTCATTGAAT
1657956 TAAATAATTTTATTTTA
1 TAAATAATTTTATTTTA
1657973 TAAA-AATTTTATTTT
1 TAAATAATTTTATTTT
1657988 TAATAAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TAAATAATTTTATTTTA
Found at i:1658687 original size:2 final size:2
Alignment explanation
Indices: 1658648--1658673 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1658638 GTGTGTGTAG
1658648 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1658674 GTCAAGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1661689 original size:21 final size:22
Alignment explanation
Indices: 1661663--1661709 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
1661653 AAAAAAATTA
*
1661663 ATAAATGTTA-TTTTACTTCCG
1 ATAAATGTTATTTTTACTTACG
1661684 ATAAATGTTATTTTTACTTACG
1 ATAAATGTTATTTTTACTTACG
1661706 ATAA
1 ATAA
1661710 TCTACTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.47
Consensus pattern (22 bp):
ATAAATGTTATTTTTACTTACG
Found at i:1663569 original size:27 final size:25
Alignment explanation
Indices: 1663539--1663635 Score: 104
Period size: 27 Copynumber: 3.6 Consensus size: 25
1663529 AAATAAACTT
*
1663539 TTTTTAATTCATTTTTTATATATAGAA
1 TTTTTAATT-ATATTTTATATATA-AA
*
1663566 TTTTTAATTGATATTCTATATATAAAA
1 TTTTTAATT-ATATTTTATATAT-AAA
*
1663593 TTTTTAATTATAATTTTATGTATAAGA
1 TTTTTAATTAT-ATTTTATATATAA-A
*
1663620 TTTTTAATTAAATTTT
1 TTTTTAATTATATTTT
1663636 TTACATATTA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
26 9 0.15
27 51 0.84
28 1 0.02
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (25 bp):
TTTTTAATTATATTTTATATATAAA
Found at i:1663649 original size:21 final size:21
Alignment explanation
Indices: 1663625--1663666 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1663615 TAAGATTTTT
1663625 AATTAAATTTTTTACATATTA
1 AATTAAATTTTTTACATATTA
*
1663646 AATTAAATTTTTTATATATTA
1 AATTAAATTTTTTACATATTA
1663667 CACTCGCCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTAAATTTTTTACATATTA
Found at i:1671762 original size:52 final size:52
Alignment explanation
Indices: 1671673--1672071 Score: 205
Period size: 52 Copynumber: 7.7 Consensus size: 52
1671663 GTTCGATGTT
* * ** *
1671673 GCTGGCCTTGAATCAGTAAATTGTTACCTTTACCATCTCTAAGTCCAATATC
1 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTCTAAGTCCAATATC
* * * * * * ***
1671725 ACTGGCCTTGAATCAGCATATTAGCATCTTTGTCATCTTTAAATTTGATATC
1 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTCTAAGTCCAATATC
* * * * * * * *
1671777 GCTAGTCTTGAATTACCATATTGGCATCTTTATCAT-TCCTGAG-CCTGATGTC
1 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCT-CTAAGTCC-AATATC
** * * * * *** * *
1671829 GCTGGCCCCGAATCAACACATTGGTACCCTCCGCATCTTTAAGTCCAATGTC
1 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTCTAAGTCCAATATC
* * * * * * * *
1671881 ACTAGCCTTGAATCAACA-CTTGGCACCTTTTTC-TTTCTTAAGTCCTATATT
1 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTC-TAAGTCCAATATC
* * * * * *
1671932 GCTGGCCTTGAATTAGCATATTGACATCTTTATCATCTTTAAGTCCAATGTG
1 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTCTAAGTCCAATATC
* * * * * *
1671984 GTTGGCCTTGAATCAGCACATTGGCACTTTTGTTATCGT-TAAGCCCAATATC
1 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCATC-TCTAAGTCCAATATC
* * * * *
1672036 GTTTGCCGTGAATTAGCATATTAGCACCTTTATCAT
1 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
1672072 TCTTTACATC
Statistics
Matches: 249, Mismatches: 90, Indels: 16
0.70 0.25 0.05
Matches are distributed among these distances:
50 2 0.01
51 34 0.14
52 207 0.83
53 6 0.02
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (52 bp):
GCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTCTAAGTCCAATATC
Done.