Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold71
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5741892
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.33
Warning! 121862 characters in sequence are not A, C, G, or T
File 24 of 33
Found at i:3832530 original size:16 final size:16
Alignment explanation
Indices: 3832511--3832541 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3832501 GTTCTCCGGA
3832511 CTTTCTCTTTTTTTTC
1 CTTTCTCTTTTTTTTC
*
3832527 CTTTTTCTTTTTTTT
1 CTTTCTCTTTTTTTT
3832542 TTTTTACCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
CTTTCTCTTTTTTTTC
Found at i:3836242 original size:12 final size:12
Alignment explanation
Indices: 3836225--3836249 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
3836215 GGCCATATAA
3836225 TATTTTAAAATT
1 TATTTTAAAATT
3836237 TATTTTAAAATT
1 TATTTTAAAATT
3836249 T
1 T
3836250 TTAAAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTTTAAAATT
Found at i:3836403 original size:25 final size:25
Alignment explanation
Indices: 3836375--3836433 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
3836365 TTATATGATC
3836375 AAAATTATAT-AATA-TATATAAATA
1 AAAATTA-ATGAATATTATATAAATA
* *
3836399 TAAAATTAATGTATATTATATAATTA
1 -AAAATTAATGAATATTATATAAATA
3836425 AAAATTAAT
1 AAAATTAAT
3836434 CTAGCATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 2 0.07
25 19 0.63
26 9 0.30
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (25 bp):
AAAATTAATGAATATTATATAAATA
Found at i:3846266 original size:204 final size:204
Alignment explanation
Indices: 3845916--3846323 Score: 798
Period size: 204 Copynumber: 2.0 Consensus size: 204
3845906 TAAGTAATGT
3845916 GCCTGTTGCTCTGCTCTTAGGATCCTGCGTGCAGTCATTCTCTCTTCCTTGCAGGGTATGCCTAC
1 GCCTGTTGCTCTGCTCTTAGGATCCTGCGTGCAGTCATTCTCTCTTCCTTGCAGGGTATGCCTAC
3845981 TATGATTTGCATGAACGACACATTTCCGATGGACAATTATTTAAGGTGGAGTTCAAAAACTTTTC
66 TATGATTTGCATGAACGACACATTTCCGATGGACAATTATTTAAGGTGGAGTTCAAAAACTTTTC
*
3846046 TTGATCTAGCATCATTTTTTCTTGCCTTAAGATTTTTCTTTATGCAGTAACATTTTAATGAATCC
131 TTGATCTAGCATCATTTTTTCTTGCCTTAAGATTTTTCTTTATGCAGGAACATTTTAATGAATCC
3846111 GAGATGACA
196 GAGATGACA
3846120 GCCTGTTGCTCTGCTCTTAGGATCCTGCGTGCAGTCATTCTCTCTTCCTTGCAGGGTATGCCTAC
1 GCCTGTTGCTCTGCTCTTAGGATCCTGCGTGCAGTCATTCTCTCTTCCTTGCAGGGTATGCCTAC
*
3846185 TATGATTTGCATGAACGACACATTTCCGATGGACAATTATTTAGGGTGGAGTTCAAAAACTTTTC
66 TATGATTTGCATGAACGACACATTTCCGATGGACAATTATTTAAGGTGGAGTTCAAAAACTTTTC
3846250 TTGATCTAGCATCATTTTTTCTTGCCTTAAGATTTTTCTTTATGCAGGAACATTTTAATGAATCC
131 TTGATCTAGCATCATTTTTTCTTGCCTTAAGATTTTTCTTTATGCAGGAACATTTTAATGAATCC
3846315 GAGATGACA
196 GAGATGACA
3846324 TAGAGTACAC
Statistics
Matches: 202, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
204 202 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38
Consensus pattern (204 bp):
GCCTGTTGCTCTGCTCTTAGGATCCTGCGTGCAGTCATTCTCTCTTCCTTGCAGGGTATGCCTAC
TATGATTTGCATGAACGACACATTTCCGATGGACAATTATTTAAGGTGGAGTTCAAAAACTTTTC
TTGATCTAGCATCATTTTTTCTTGCCTTAAGATTTTTCTTTATGCAGGAACATTTTAATGAATCC
GAGATGACA
Found at i:3850639 original size:2 final size:2
Alignment explanation
Indices: 3850634--3850681 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
3850624 ATTGTGTGTG
*
3850634 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3850676 TA TA TA
1 TA TA TA
3850682 GCGCATATGA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:3851513 original size:353 final size:354
Alignment explanation
Indices: 3850884--3851566 Score: 1323
Period size: 353 Copynumber: 1.9 Consensus size: 354
3850874 AGAGTTTGAG
3850884 CAAAAGAGGTTTATCAGAATCCAAAGTTTTTTTTTTTGAAGATTCATATAGTCTGCTTTTCTTTC
1 CAAAAGAGGTTTATCAGAATCCAAAGTTTTTTTTTTTGAAGATTCATATAGTCTGCTTTTCTTTC
3850949 TGGGTTTTTTGTAACTATTGCTTGCTCTTTGGTTCCTAAACTTTTTTTTGGTACTTACTTTCAGT
66 TGGGTTTTTTGTAACTATTGCTTGCTCTTTGGTTCCTAAACTTTTTTTTGGTACTTACTTTCAGT
*
3851014 TTTAGTTTGAGAACATCCGGATTGCACTTATTTTTGTTTTTAATATTCTTCATTTTCCTTGTATT
131 TTTAGTTTGAGAACATCCGGATTACACTTATTTTTGTTTTTAATATTCTTCATTTTCCTTGTATT
*
3851079 TTCAGATCCTTATCTGAATTTCTGAACCAGGATATTGGAACCATGTCTCATTTTGAACATGGATA
196 TTCAGATCCTTATCTGAAGTTCTGAACCAGGATATTGGAACCATGTCTCATTTTGAACATGGATA
3851144 TGTTTTTGTTCTTGATAATGGTAGAGAGGGTTTTTGATCACCCTTTTTTTGCCTCTGGCATTTAG
261 TGTTTTTGTTCTTGATAATGGTAGAGAGGGTTTTTGATCACCCTTTTTTTGCCTCTGGCATTTAG
3851209 TATTTCGTTGCTCTCTTCCCTCCCCCCAC
326 TATTTCGTTGCTCTCTTCCCTCCCCCCAC
3851238 CAAAAGAGGTTTATCAGAATCCAAAG-TTTTTTTTTTGAAGATTCATATAGTCTGCTTTTCTTTC
1 CAAAAGAGGTTTATCAGAATCCAAAGTTTTTTTTTTTGAAGATTCATATAGTCTGCTTTTCTTTC
3851302 TGGGTTTTTTGTAACTATTGCTTGCTCTTTGGTTCCTAAACTTTTTTTTGGTACTTACTTTCAGT
66 TGGGTTTTTTGTAACTATTGCTTGCTCTTTGGTTCCTAAACTTTTTTTTGGTACTTACTTTCAGT
3851367 TTTAGTTTGAGAACATCCGGATTACACTTATTTTTGTTTTTAATATTCTTCATTTTCCTTGTATT
131 TTTAGTTTGAGAACATCCGGATTACACTTATTTTTGTTTTTAATATTCTTCATTTTCCTTGTATT
*
3851432 TTCAGATCCTTATCTGAAGTTCTGAACCTGGATATTGGAACCATGTCTCATTTTGAACATGGATA
196 TTCAGATCCTTATCTGAAGTTCTGAACCAGGATATTGGAACCATGTCTCATTTTGAACATGGATA
*
3851497 TGTTTTTGTTCTTGATAATGGTAGAGAGGTTTTTTGATCACCCTTTTTTTGCCTCTGGCATTTAG
261 TGTTTTTGTTCTTGATAATGGTAGAGAGGGTTTTTGATCACCCTTTTTTTGCCTCTGGCATTTAG
3851562 TATTT
326 TATTT
3851567 TGTAAGAACA
Statistics
Matches: 325, Mismatches: 4, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
353 299 0.92
354 26 0.08
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.47
Consensus pattern (354 bp):
CAAAAGAGGTTTATCAGAATCCAAAGTTTTTTTTTTTGAAGATTCATATAGTCTGCTTTTCTTTC
TGGGTTTTTTGTAACTATTGCTTGCTCTTTGGTTCCTAAACTTTTTTTTGGTACTTACTTTCAGT
TTTAGTTTGAGAACATCCGGATTACACTTATTTTTGTTTTTAATATTCTTCATTTTCCTTGTATT
TTCAGATCCTTATCTGAAGTTCTGAACCAGGATATTGGAACCATGTCTCATTTTGAACATGGATA
TGTTTTTGTTCTTGATAATGGTAGAGAGGGTTTTTGATCACCCTTTTTTTGCCTCTGGCATTTAG
TATTTCGTTGCTCTCTTCCCTCCCCCCAC
Found at i:3855410 original size:166 final size:166
Alignment explanation
Indices: 3855136--3855467 Score: 664
Period size: 166 Copynumber: 2.0 Consensus size: 166
3855126 TGAACTAATG
3855136 TTAACGTTACAGCATTTTATGCTTCTTGAGCATGGCATCTATGCTACATTCGATTCTCTGATCTG
1 TTAACGTTACAGCATTTTATGCTTCTTGAGCATGGCATCTATGCTACATTCGATTCTCTGATCTG
3855201 CATCTTCAATTTTGCATGTCAGGTTTTCTTATACCATTTGAAGGCGGGTTGGCTCGTCCCTTGCT
66 CATCTTCAATTTTGCATGTCAGGTTTTCTTATACCATTTGAAGGCGGGTTGGCTCGTCCCTTGCT
3855266 CTTTATGTTGTTAACTTTGGGATATTGGAGAATTTT
131 CTTTATGTTGTTAACTTTGGGATATTGGAGAATTTT
3855302 TTAACGTTACAGCATTTTATGCTTCTTGAGCATGGCATCTATGCTACATTCGATTCTCTGATCTG
1 TTAACGTTACAGCATTTTATGCTTCTTGAGCATGGCATCTATGCTACATTCGATTCTCTGATCTG
3855367 CATCTTCAATTTTGCATGTCAGGTTTTCTTATACCATTTGAAGGCGGGTTGGCTCGTCCCTTGCT
66 CATCTTCAATTTTGCATGTCAGGTTTTCTTATACCATTTGAAGGCGGGTTGGCTCGTCCCTTGCT
3855432 CTTTATGTTGTTAACTTTGGGATATTGGAGAATTTT
131 CTTTATGTTGTTAACTTTGGGATATTGGAGAATTTT
3855468 CCATGTTATA
Statistics
Matches: 166, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
166 166 1.00
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (166 bp):
TTAACGTTACAGCATTTTATGCTTCTTGAGCATGGCATCTATGCTACATTCGATTCTCTGATCTG
CATCTTCAATTTTGCATGTCAGGTTTTCTTATACCATTTGAAGGCGGGTTGGCTCGTCCCTTGCT
CTTTATGTTGTTAACTTTGGGATATTGGAGAATTTT
Found at i:3856945 original size:7 final size:7
Alignment explanation
Indices: 3856933--3856957 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
3856923 AATGAGGTAT
3856933 AATTTTA
1 AATTTTA
3856940 AATTTTA
1 AATTTTA
3856947 AATTTTA
1 AATTTTA
3856954 AATT
1 AATT
3856958 CATACTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
AATTTTA
Found at i:3858155 original size:34 final size:34
Alignment explanation
Indices: 3858108--3858172 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
3858098 TACACTGTCA
3858108 GTCAAAGAGTTAGTCAAAAATTATTAAGTGATTG
1 GTCAAAGAGTTAGTCAAAAATTATTAAGTGATTG
* * *
3858142 GTCAAAGATTTAGTCAAAGATTATTTAGTGA
1 GTCAAAGAGTTAGTCAAAAATTATTAAGTGA
3858173 ACGTTGTACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (34 bp):
GTCAAAGAGTTAGTCAAAAATTATTAAGTGATTG
Found at i:3870877 original size:39 final size:39
Alignment explanation
Indices: 3870792--3870873 Score: 94
Period size: 39 Copynumber: 2.1 Consensus size: 39
3870782 ACTTCACACC
**
3870792 TGTTTCTTCATTGTCCTTCTCGACCAAAAGTTTACTCCT
1 TGTTTCTTCATAATCCTTCTCGACCAAAAGTTTACTCCT
* * * * *
3870831 TGCTTCTTCATAATCTTTCTCGA-CTAAAGTTTGCTCTT
1 TGTTTCTTCATAATCCTTCTCGACCAAAAGTTTACTCCT
3870869 TGTTT
1 TGTTT
3870874 TCTTATTACG
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
38 16 0.46
39 19 0.54
ACGTcount: A:0.17, C:0.24, G:0.11, T:0.48
Consensus pattern (39 bp):
TGTTTCTTCATAATCCTTCTCGACCAAAAGTTTACTCCT
Found at i:3879830 original size:14 final size:14
Alignment explanation
Indices: 3879808--3879844 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
3879798 TATAACTTTC
*
3879808 ATATAATAATCTGTA
1 ATAT-ATAATCAGTA
3879823 ATATATAATCAGTA
1 ATATATAATCAGTA
3879837 ATATATAA
1 ATATATAA
3879845 GTATTTTGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (14 bp):
ATATATAATCAGTA
Found at i:3881150 original size:21 final size:21
Alignment explanation
Indices: 3881126--3881165 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
3881116 ATATTTTATT
3881126 TAAAT-TTAATTATAAAATATA
1 TAAATATTAA-TATAAAATATA
3881147 TAAATATTAATATAAAATA
1 TAAATATTAATATAAAATA
3881166 ATTTTTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATATTAATATAAAATATA
Found at i:3881534 original size:22 final size:21
Alignment explanation
Indices: 3881492--3881534 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
3881482 CTCATATAAT
* * *
3881492 ATTTTTTAAATTTTATTTTTA
1 ATTTTTTAAACTTAATCTTTA
3881513 ATTTTTTAAAACTTAATCTTTA
1 ATTTTTT-AAACTTAATCTTTA
3881535 GTAATGTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTTTTAAACTTAATCTTTA
Found at i:3898321 original size:21 final size:21
Alignment explanation
Indices: 3898279--3898322 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
3898269 ACCGTCAATC
*
3898279 TGTCAGTCAAAAGTTACGAAG
1 TGTCAGTCAAAAGTTACAAAG
* *
3898300 TGTCGGTCAAAAGTTGCAAAG
1 TGTCAGTCAAAAGTTACAAAG
3898321 TG
1 TG
3898323 AACGTTATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (21 bp):
TGTCAGTCAAAAGTTACAAAG
Found at i:3899168 original size:2 final size:2
Alignment explanation
Indices: 3899163--3899200 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
3899153 ATTGTGTGTG
*
3899163 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3899201 GCGCATATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:3902062 original size:2 final size:2
Alignment explanation
Indices: 3902055--3902088 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
3902045 CCTCTTGCGC
3902055 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3902089 TTTGTGACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3905790 original size:2 final size:2
Alignment explanation
Indices: 3905783--3905811 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
3905773 CTTATCAGCA
3905783 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
3905812 GCTATCAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:3907712 original size:24 final size:24
Alignment explanation
Indices: 3907685--3907734 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
3907675 AGCCCAAACT
3907685 GTCTTTGTCTTGAAACAGGCTCAC
1 GTCTTTGTCTTGAAACAGGCTCAC
3907709 GTCTTTGTCTTGAAACAGGCTCAC
1 GTCTTTGTCTTGAAACAGGCTCAC
3907733 GT
1 GT
3907735 TCAGGAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (24 bp):
GTCTTTGTCTTGAAACAGGCTCAC
Found at i:3919973 original size:22 final size:21
Alignment explanation
Indices: 3919926--3919969 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
3919916 ATATATATTT
3919926 TATTTAAATTTAATCATAAAA
1 TATTTAAATTTAATCATAAAA
3919947 TATTTAAATATTAA-CATAAAA
1 TATTTAAAT-TTAATCATAAAA
3919968 TA
1 TA
3919970 ATTTTTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (21 bp):
TATTTAAATTTAATCATAAAA
Found at i:3923051 original size:12 final size:12
Alignment explanation
Indices: 3923027--3923059 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
3923017 ATATGAACAT
3923027 AACATAA-ATAA
1 AACATAATATAA
3923038 AACATAATATAA
1 AACATAATATAA
*
3923050 AAAATAATAT
1 AACATAATAT
3923060 GAATATTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 7 0.35
12 13 0.65
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (12 bp):
AACATAATATAA
Found at i:3923390 original size:23 final size:22
Alignment explanation
Indices: 3923356--3923399 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
3923346 CCTTTCTCCA
* * *
3923356 AAAAATAGGACATGTGTTAAAT
1 AAAAAGAGGACACGTGATAAAT
3923378 AAAAAGAGTGACACGTGATAAA
1 AAAAAGAG-GACACGTGATAAA
3923400 AAATAACACG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.52, C:0.07, G:0.20, T:0.20
Consensus pattern (22 bp):
AAAAAGAGGACACGTGATAAAT
Found at i:3925472 original size:2 final size:2
Alignment explanation
Indices: 3925465--3925492 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3925455 TTGAATCTGA
3925465 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3925493 TAATCAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3926349 original size:24 final size:24
Alignment explanation
Indices: 3926322--3926379 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
3926312 CTTCCGTTGT
* *
3926322 GAAATTTGTGGGCATTGGGATTGG
1 GAAATTCGTGGGCATTGGAATTGG
*
3926346 GAAATTCGTGGGCATTGGAATTGT
1 GAAATTCGTGGGCATTGGAATTGG
3926370 GAAATTCGTG
1 GAAATTCGTG
3926380 CCTTTTCTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.24, C:0.07, G:0.36, T:0.33
Consensus pattern (24 bp):
GAAATTCGTGGGCATTGGAATTGG
Found at i:3931318 original size:23 final size:23
Alignment explanation
Indices: 3931291--3931348 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
3931281 AAGTGAAATC
*
3931291 TTTTCTTTCTTTCGTTTTGTTTT
1 TTTTCTTTCTTTCGTTTTGTTCT
*
3931314 TTTTCTTTCTTTCTTTTTGTTCT
1 TTTTCTTTCTTTCGTTTTGTTCT
* *
3931337 ATTTCATTCTTT
1 TTTTCTTTCTTT
3931349 TCAAGTTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.03, C:0.16, G:0.05, T:0.76
Consensus pattern (23 bp):
TTTTCTTTCTTTCGTTTTGTTCT
Found at i:3933250 original size:2 final size:2
Alignment explanation
Indices: 3933243--3933281 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
3933233 TGCTAAATCA
3933243 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3933282 TTCTGGGTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:3938453 original size:469 final size:469
Alignment explanation
Indices: 3937575--3938478 Score: 1655
Period size: 469 Copynumber: 1.9 Consensus size: 469
3937565 CCCCCCCCCC
*
3937575 AAGGTTCTGCTCTATATGAATACATCTTATTCTTTTTTGTAGTTCTCAATTGTAAAACTATAGCA
1 AAGGTTCTGCTCTATATGAATACATCTCATTCTTTTTTGTAGTTCTCAATTGTAAAACTATAGCA
*
3937640 TCATGGGAAAGCCAATGGTTTTTATTAGATAAGTGAATATCTTGAAAAGATTTGCTACATTCATG
66 TCATGGGAAAGCCAATGGTTTTTATTAGATAAGTGAATATCTTGAAAAGATTCGCTACATTCATG
3937705 GATTTGTTATGTTAGCATGCATTCTTGTCATAATCACATGTTTTATTGCTCTGATTTTTAAGGTA
131 GATTTGTTATGTTAGCATGCATTCTTGTCATAATCACATGTTTTATTGCTCTGATTTTTAAGGTA
* * *
3937770 TCTAAGGGCTTGAGGTTTTAGTTGCAGGTGTAACACAAGAAGATCCTCAGACTGAAGATCTTAGC
196 TCTAAGGGCTTGAGGTTTGAGTTGCAGCTGTAACACAAGAAGATCCTCAGACTGAAGATCCTAGC
3937835 CAGGAAGTTAGAGGTTTATATTTTAAAAAATTCTGGTTTGTTATCCATATAATATAACTCATATT
261 CAGGAAGTTAGAGGTTTATATTTTAAAAAATTCTGGTTTGTTATCCATATAATATAACTCATATT
3937900 TACTTTTGTTCCTATTTCCTTCCTATACAGGTTGCAGGTGTAACACTTTTGGCTTCCTTGATGCC
326 TACTTTTGTTCCTATTTCCTTCCTATACAGGTTGCAGGTGTAACACTTTTGGCTTCCTTGATGCC
**
3937965 TAAATTGGATTTGAAGGTCTTTCACATTGCAGGGTTTGAGTGCAACTTTCAACCTTGATTAGGTT
391 TAAATTGGATTTGAAGGTCTTTCACATCACAGGGTTTGAGTGCAACTTTCAACCTTGATTAGGTT
3938030 TTTTTTTTTTTTCT
456 TTTTTTTTTTTTCT
*
3938044 AAGGTTCTGCTCTATATGAATACATCTCATTGTTTTTTGTAGTTCTCAATTGTAAAACTATAGCA
1 AAGGTTCTGCTCTATATGAATACATCTCATTCTTTTTTGTAGTTCTCAATTGTAAAACTATAGCA
*
3938109 TCATGGGAAAGCCAGTGGTTTTTATTAGATAAGTGAATATCTTGAAAAGATTCGCTACATTCATG
66 TCATGGGAAAGCCAATGGTTTTTATTAGATAAGTGAATATCTTGAAAAGATTCGCTACATTCATG
*
3938174 GATTTGTTATGTTAGTATGCATTCTTGTCATAATCACATGTTTTATTGCTCTGATTTTTAAGGTA
131 GATTTGTTATGTTAGCATGCATTCTTGTCATAATCACATGTTTTATTGCTCTGATTTTTAAGGTA
* **
3938239 TCTAAGGGCTTGAGGTTTGAGTTGTAGCTGTAACACTTGAAGATCCTCAGACTGAAGATCCTAGC
196 TCTAAGGGCTTGAGGTTTGAGTTGCAGCTGTAACACAAGAAGATCCTCAGACTGAAGATCCTAGC
*
3938304 CAGGAAGTTAGAGGTTTATATTTTAAAAAATTCTGGTTTGTTATCCATTTAATATAACTCATATT
261 CAGGAAGTTAGAGGTTTATATTTTAAAAAATTCTGGTTTGTTATCCATATAATATAACTCATATT
*
3938369 TACTTTTGTTCCTATTTCCTTCCTATACAGGTTGCAGGTGTAACATTTTTGGCTTCCTTGATGCC
326 TACTTTTGTTCCTATTTCCTTCCTATACAGGTTGCAGGTGTAACACTTTTGGCTTCCTTGATGCC
* *
3938434 TAGATTGGATTTGAAGGTCTTTCACGTCACAGGGTTTGAGTGCAA
391 TAAATTGGATTTGAAGGTCTTTCACATCACAGGGTTTGAGTGCAA
3938479 GTTTGCTCTC
Statistics
Matches: 418, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
469 418 1.00
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (469 bp):
AAGGTTCTGCTCTATATGAATACATCTCATTCTTTTTTGTAGTTCTCAATTGTAAAACTATAGCA
TCATGGGAAAGCCAATGGTTTTTATTAGATAAGTGAATATCTTGAAAAGATTCGCTACATTCATG
GATTTGTTATGTTAGCATGCATTCTTGTCATAATCACATGTTTTATTGCTCTGATTTTTAAGGTA
TCTAAGGGCTTGAGGTTTGAGTTGCAGCTGTAACACAAGAAGATCCTCAGACTGAAGATCCTAGC
CAGGAAGTTAGAGGTTTATATTTTAAAAAATTCTGGTTTGTTATCCATATAATATAACTCATATT
TACTTTTGTTCCTATTTCCTTCCTATACAGGTTGCAGGTGTAACACTTTTGGCTTCCTTGATGCC
TAAATTGGATTTGAAGGTCTTTCACATCACAGGGTTTGAGTGCAACTTTCAACCTTGATTAGGTT
TTTTTTTTTTTTCT
Found at i:3939477 original size:57 final size:57
Alignment explanation
Indices: 3939410--3939524 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
3939400 ACTGCTGCTG
3939410 ATGCTTTTTTGTTGCTAGAGAAATCATAGTCTTTGCTGGTGGAAGTCCTTTTAAAAA
1 ATGCTTTTTTGTTGCTAGAGAAATCATAGTCTTTGCTGGTGGAAGTCCTTTTAAAAA
3939467 ATGCTTTTTTGTTGCTAGAGAAATCATAGTCTTTGCTGGTGGAAGTCCTTTTAAAAA
1 ATGCTTTTTTGTTGCTAGAGAAATCATAGTCTTTGCTGGTGGAAGTCCTTTTAAAAA
3939524 A
1 A
3939525 GTCCATCTGG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (57 bp):
ATGCTTTTTTGTTGCTAGAGAAATCATAGTCTTTGCTGGTGGAAGTCCTTTTAAAAA
Found at i:3941693 original size:2 final size:2
Alignment explanation
Indices: 3941686--3941726 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
3941676 TGCTAAATCA
*
3941686 AT AT AT AT AT AT AT AT AT AT A- AA AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3941727 TTCTGGGTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:3947322 original size:2 final size:2
Alignment explanation
Indices: 3947317--3947347 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3947307 ATCTTATCAG
3947317 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
3947348 GCTATCTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:3951067 original size:240 final size:240
Alignment explanation
Indices: 3950644--3951125 Score: 964
Period size: 240 Copynumber: 2.0 Consensus size: 240
3950634 TATCTTGAAA
3950644 AGATTCGCTACATTCATGGATTTGTTATGTTAGCATGCATTCTTGTCATAATCACATGTTTTATT
1 AGATTCGCTACATTCATGGATTTGTTATGTTAGCATGCATTCTTGTCATAATCACATGTTTTATT
3950709 GCTTTGATTTTTAAGGTATTTAAGGGCTTGAGGTTTGAGTTGCAGGTGTAACACTAGAAGATCCT
66 GCTTTGATTTTTAAGGTATTTAAGGGCTTGAGGTTTGAGTTGCAGGTGTAACACTAGAAGATCCT
3950774 CAGACCGAAGATCTTAGCCAGGAAGTTAGAGGTTTGTATTTTAAAAAATTCTGGTTTGTTATCCA
131 CAGACCGAAGATCTTAGCCAGGAAGTTAGAGGTTTGTATTTTAAAAAATTCTGGTTTGTTATCCA
3950839 TATAATATAACTCATTTACTTTTGTTCCTATTTTTTTTCCTATAT
196 TATAATATAACTCATTTACTTTTGTTCCTATTTTTTTTCCTATAT
3950884 AGATTCGCTACATTCATGGATTTGTTATGTTAGCATGCATTCTTGTCATAATCACATGTTTTATT
1 AGATTCGCTACATTCATGGATTTGTTATGTTAGCATGCATTCTTGTCATAATCACATGTTTTATT
3950949 GCTTTGATTTTTAAGGTATTTAAGGGCTTGAGGTTTGAGTTGCAGGTGTAACACTAGAAGATCCT
66 GCTTTGATTTTTAAGGTATTTAAGGGCTTGAGGTTTGAGTTGCAGGTGTAACACTAGAAGATCCT
3951014 CAGACCGAAGATCTTAGCCAGGAAGTTAGAGGTTTGTATTTTAAAAAATTCTGGTTTGTTATCCA
131 CAGACCGAAGATCTTAGCCAGGAAGTTAGAGGTTTGTATTTTAAAAAATTCTGGTTTGTTATCCA
3951079 TATAATATAACTCATTTACTTTTGTTCCTATTTTTTTTCCTATAT
196 TATAATATAACTCATTTACTTTTGTTCCTATTTTTTTTCCTATAT
3951124 AG
1 AG
3951126 GTTGCAGGTG
Statistics
Matches: 242, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
240 242 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (240 bp):
AGATTCGCTACATTCATGGATTTGTTATGTTAGCATGCATTCTTGTCATAATCACATGTTTTATT
GCTTTGATTTTTAAGGTATTTAAGGGCTTGAGGTTTGAGTTGCAGGTGTAACACTAGAAGATCCT
CAGACCGAAGATCTTAGCCAGGAAGTTAGAGGTTTGTATTTTAAAAAATTCTGGTTTGTTATCCA
TATAATATAACTCATTTACTTTTGTTCCTATTTTTTTTCCTATAT
Found at i:3961567 original size:59 final size:59
Alignment explanation
Indices: 3961475--3961594 Score: 213
Period size: 59 Copynumber: 2.0 Consensus size: 59
3961465 TGTTCAAATT
* *
3961475 ATTGGTGTCTTCAACAAAATAGATGTTCATGCTGCCTTTTTTCTAACACCTACGTACCC
1 ATTGGTGTCTTCAACAAAATAGATGTTCATGCTGCCATTTTTCTAACACCTACCTACCC
*
3961534 ATTGGTGTCTTCAACAAAATAGATGTTCATGCTGCCATTTTTCTAATACCTACCTACCC
1 ATTGGTGTCTTCAACAAAATAGATGTTCATGCTGCCATTTTTCTAACACCTACCTACCC
3961593 AT
1 AT
3961595 CACACGGACT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (59 bp):
ATTGGTGTCTTCAACAAAATAGATGTTCATGCTGCCATTTTTCTAACACCTACCTACCC
Found at i:3961866 original size:14 final size:14
Alignment explanation
Indices: 3961847--3961874 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
3961837 AATTTGCTAG
3961847 AACTCTATAGAGAT
1 AACTCTATAGAGAT
3961861 AACTCTATAGAGAT
1 AACTCTATAGAGAT
3961875 TTAGGCATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
AACTCTATAGAGAT
Found at i:3966373 original size:27 final size:27
Alignment explanation
Indices: 3966327--3966406 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 27
3966317 TAGCCGAAGG
3966327 ACATTTATAGAGATATATGTTTTTAATGC
1 ACATTTAT--AGATATATGTTTTTAATGC
* * *
3966356 ATATTTATAGATTTATGTTTTTAATGT
1 ACATTTATAGATATATGTTTTTAATGC
3966383 ACATTTATAGATATATGTTTTTAA
1 ACATTTATAGATATATGTTTTTAA
3966407 CATATATATA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 39 0.85
29 7 0.15
ACGTcount: A:0.34, C:0.04, G:0.11, T:0.51
Consensus pattern (27 bp):
ACATTTATAGATATATGTTTTTAATGC
Found at i:3966483 original size:60 final size:60
Alignment explanation
Indices: 3966383--3966506 Score: 180
Period size: 60 Copynumber: 2.1 Consensus size: 60
3966373 TTTTTAATGT
* * *
3966383 ACATTTATAGATATATGTTTTTAACATATATATACGTAGTTTTTTAATACGTGCATTTAC
1 ACATTTATAGATATATGTTTTTAACATATATATACATAGTTTTTGAATACATGCATTTAC
*
3966443 ACATTTATAGATATATGTTTTTAATGCATAT-T-TACATAGTTTTTGGATACATGCATTTAC
1 ACATTTATAGATATATGTTTTTAA--CATATATATACATAGTTTTTGAATACATGCATTTAC
3966503 ACAT
1 ACAT
3966507 GAATCATCAT
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
60 52 0.90
61 1 0.02
62 5 0.09
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.46
Consensus pattern (60 bp):
ACATTTATAGATATATGTTTTTAACATATATATACATAGTTTTTGAATACATGCATTTAC
Found at i:3968494 original size:21 final size:21
Alignment explanation
Indices: 3968470--3968511 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
3968460 TAATATATTT
*
3968470 TTATTTAAAT-TTAATTATAAA
1 TTATATAAATATTAA-TATAAA
3968491 TTATATAAATATTAATATAAA
1 TTATATAAATATTAATATAAA
3968512 ATAATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TTATATAAATATTAATATAAA
Found at i:3969215 original size:13 final size:13
Alignment explanation
Indices: 3969197--3969222 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3969187 TACTTCTAAT
3969197 TTTAAGATAAGGG
1 TTTAAGATAAGGG
3969210 TTTAAGATAAGGG
1 TTTAAGATAAGGG
3969223 ATATGATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (13 bp):
TTTAAGATAAGGG
Found at i:3970289 original size:14 final size:14
Alignment explanation
Indices: 3970272--3970317 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
3970262 TTTATATTTA
3970272 ATAAATATTTAAAT
1 ATAAATATTTAAAT
*
3970286 ATAAAT-TTAAAAAT
1 ATAAATATT-TAAAT
*
3970300 ATAATTATTTAAAT
1 ATAAATATTTAAAT
3970314 -TAAA
1 ATAAA
3970318 AAAATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
13 5 0.19
14 19 0.73
15 2 0.08
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAAATATTTAAAT
Found at i:3971241 original size:32 final size:33
Alignment explanation
Indices: 3971199--3971262 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 33
3971189 TTTTAATATT
3971199 AAATAAATATTAAATATAAT-ACATAATTAATC
1 AAATAAATATTAAATATAATGACATAATTAATC
* * * *
3971231 AAATATATATTAATTTTAATGATATAATTAAT
1 AAATAAATATTAAATATAATGACATAATTAAT
3971263 TTATTAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 17 0.63
33 10 0.37
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (33 bp):
AAATAAATATTAAATATAATGACATAATTAATC
Found at i:3972394 original size:6 final size:7
Alignment explanation
Indices: 3972370--3972399 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
3972360 TGTTGTTCAT
3972370 TATTTAA
1 TATTTAA
3972377 TATTTAA
1 TATTTAA
3972384 TATTT-A
1 TATTTAA
3972390 TATTTAA
1 TATTTAA
3972397 TAT
1 TAT
3972400 AATTTTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TATTTAA
Found at i:3972394 original size:13 final size:14
Alignment explanation
Indices: 3972370--3972399 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
3972360 TGTTGTTCAT
3972370 TATTTAATATTTAA
1 TATTTAATATTTAA
3972384 TATTT-ATATTTAA
1 TATTTAATATTTAA
3972397 TAT
1 TAT
3972400 AATTTTAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TATTTAATATTTAA
Found at i:3972868 original size:18 final size:18
Alignment explanation
Indices: 3972842--3972881 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
3972832 CTTTATATAA
* *
3972842 TAATCATTTAATTTAGTT
1 TAATCATTTAAATAAGTT
*
3972860 TAATTATTTAAATAAGTT
1 TAATCATTTAAATAAGTT
3972878 TAAT
1 TAAT
3972882 GTTATACACC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.53
Consensus pattern (18 bp):
TAATCATTTAAATAAGTT
Found at i:3977071 original size:11 final size:12
Alignment explanation
Indices: 3977057--3977103 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
3977047 AATTTTAAAT
3977057 TAAT-TAAATTA
1 TAATATAAATTA
3977068 TAATATAAA--A
1 TAATATAAATTA
3977078 T-ATATAAA-TA
1 TAATATAAATTA
3977088 TAATATAAATATA
1 TAATATAAAT-TA
3977101 TAA
1 TAA
3977104 ATTATTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
9 7 0.23
10 4 0.13
11 11 0.35
12 4 0.13
13 5 0.16
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATATAAATTA
Found at i:3977091 original size:20 final size:19
Alignment explanation
Indices: 3977061--3977160 Score: 77
Period size: 19 Copynumber: 5.3 Consensus size: 19
3977051 TTAAATTAAT
3977061 TAAATTATAATATAAAATATA
1 TAAA-TATAATAT-AAATATA
3977082 TAAATATAATATAAATATA
1 TAAATATAATATAAATATA
*
3977101 TAAAT-T-AT-T-AATATGT
1 TAAATATAATATAAATAT-A
*
3977117 TATAATAT-CT-TAAATAATA
1 TA-AATATAATATAAAT-ATA
*
3977136 TAAATATAATATAAAAATA
1 TAAATATAATATAAATATA
*
3977155 TGAATA
1 TAAATA
3977161 ATCAAATTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
15 5 0.08
16 3 0.05
17 5 0.08
18 9 0.14
19 26 0.39
20 14 0.21
21 4 0.06
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (19 bp):
TAAATATAATATAAATATA
Found at i:3977099 original size:26 final size:26
Alignment explanation
Indices: 3977069--3977150 Score: 85
Period size: 26 Copynumber: 3.1 Consensus size: 26
3977059 ATTAAATTAT
3977069 AATATAAAATATATAAATATAATATA
1 AATATAAAATATATAAATATAATATA
* **
3977095 AATATATAAAT-TATTAATATGTTATA
1 AATATA-AAATATATAAATATAATATA
* *
3977121 ATATCTTAAATAATATAAATATAATATA
1 A-ATATAAAAT-ATATAAATATAATATA
3977149 AA
1 AA
3977151 AATATGAATA
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
26 23 0.52
27 8 0.18
28 13 0.30
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (26 bp):
AATATAAAATATATAAATATAATATA
Found at i:3984592 original size:25 final size:24
Alignment explanation
Indices: 3984564--3984610 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
3984554 TATAAAAAAT
3984564 TAAACATA-AATAAAATATAAATTCA
1 TAAACATATAA-AAAAT-TAAATTCA
*
3984589 TAAACTTATAAAAAATTAAATT
1 TAAACATATAAAAAATTAAATT
3984611 AAATAACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 6 0.30
25 12 0.60
26 2 0.10
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (24 bp):
TAAACATATAAAAAATTAAATTCA
Found at i:3985245 original size:22 final size:21
Alignment explanation
Indices: 3985220--3985262 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
3985210 TGAAATTGAC
3985220 TTAAAAAAATTATTTTACTATT
1 TTAAAAAAATTATTTTA-TATT
* *
3985242 TTAAATATATTATTTTATATT
1 TTAAAAAAATTATTTTATATT
3985263 GATATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TTAAAAAAATTATTTTATATT
Found at i:3988419 original size:2 final size:2
Alignment explanation
Indices: 3988382--3988407 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3988372 ATTAAGTACA
3988382 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3988408 TGTTTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3989308 original size:22 final size:21
Alignment explanation
Indices: 3989270--3989328 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
3989260 ATTTTTTATT
3989270 TAAATTTAATTATAAAATATA
1 TAAATTTAATTATAAAATATA
3989291 TAAATATTAA-TATAAAA-ATA
1 TAAAT-TTAATTATAAAATATA
* *
3989311 -ATATTTAAATAATAAAAT
1 TAAATTT-AATTATAAAAT
3989329 GAATAATCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
18 2 0.06
19 5 0.16
20 9 0.28
21 12 0.38
22 4 0.12
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TAAATTTAATTATAAAATATA
Found at i:3990636 original size:4 final size:4
Alignment explanation
Indices: 3990627--3990651 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
3990617 AATTCAACTA
3990627 AAAG AAAG AAAG AAAG AAAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG A
3990652 GTTCTTTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:3992032 original size:31 final size:31
Alignment explanation
Indices: 3991994--3992055 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
3991984 CTAGTTAAAG
3991994 AAGAAAATTTACATTTTCAAGCAAAGCTGGT
1 AAGAAAATTTACATTTTCAAGCAAAGCTGGT
3992025 AAGAAAATTTACATTTTCAAGCAAAGCTGGT
1 AAGAAAATTTACATTTTCAAGCAAAGCTGGT
3992056 CTCTTTTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (31 bp):
AAGAAAATTTACATTTTCAAGCAAAGCTGGT
Found at i:3995224 original size:21 final size:20
Alignment explanation
Indices: 3995185--3995226 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
3995175 ATTAGTAAAA
* *
3995185 AAATATTATAATTTTAAATT
1 AAATATAATAATATTAAATT
3995205 AAATATAATATATATTAAATT
1 AAATATAATA-ATATTAAATT
3995226 A
1 A
3995227 TTATGTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATATAATAATATTAAATT
Found at i:3996757 original size:21 final size:23
Alignment explanation
Indices: 3996728--3996774 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
3996718 ATAATATGAG
*
3996728 TTTTAAATTATTTAATAAA-AAA
1 TTTTAAATTAATTAATAAACAAA
*
3996750 TTTT-AATTAATTCATAAACAAA
1 TTTTAAATTAATTAATAAACAAA
3996772 TTT
1 TTT
3996775 ATTTTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (23 bp):
TTTTAAATTAATTAATAAACAAA
Found at i:3997771 original size:24 final size:25
Alignment explanation
Indices: 3997730--3997780 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
3997720 AAATTTTTAA
3997730 AATTTATAATTATAAAAAAATATTT
1 AATTTATAATTATAAAAAAATATTT
*
3997755 AATTT-TAATT-TATAAAATATATTT
1 AATTTATAATTATA-AAAAAATATTT
3997779 AA
1 AA
3997781 AATATTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 2 0.08
24 17 0.71
25 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
AATTTATAATTATAAAAAAATATTT
Found at i:3998226 original size:26 final size:25
Alignment explanation
Indices: 3998162--3998227 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 25
3998152 GATCATTATT
**
3998162 TATTAA-TTAAAATAA-TATTTTAA
1 TATTAATTTAAAATAATTATAATAA
**
3998185 T-TTAATTTAATTTAATTATAATACA
1 TATTAATTTAAAATAATTATAATA-A
3998210 TATTAATTTAAAATAATT
1 TATTAATTTAAAATAATT
3998228 TTTAAATATT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
22 4 0.12
23 8 0.24
24 5 0.15
25 2 0.06
26 14 0.42
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
TATTAATTTAAAATAATTATAATAA
Found at i:3998281 original size:17 final size:19
Alignment explanation
Indices: 3998259--3998298 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
3998249 TACATAATAA
3998259 TTTAAATCT-AAC-TAAAT
1 TTTAAATCTAAACTTAAAT
*
3998276 TTTAAATTTAAACTTAAAT
1 TTTAAATCTAAACTTAAAT
3998295 TTTA
1 TTTA
3998299 TTTTATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 3 0.15
19 9 0.45
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.47
Consensus pattern (19 bp):
TTTAAATCTAAACTTAAAT
Found at i:4003999 original size:2 final size:2
Alignment explanation
Indices: 4003987--4004027 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
4003977 CAAAACAAAC
4003987 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4004028 GTTTTGGAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4004858 original size:2 final size:2
Alignment explanation
Indices: 4004851--4004888 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
4004841 AGGGTGTTGG
4004851 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4004889 TTTTCCTGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4009506 original size:34 final size:34
Alignment explanation
Indices: 4009438--4009654 Score: 258
Period size: 34 Copynumber: 6.4 Consensus size: 34
4009428 ATATAGTATA
* *
4009438 TGTTGATTAAAT-GGTAATTTGGTAGTTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* * **
4009471 TGTTGATTAAATGGGTGATTTGGTGGTTTGTCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* * *
4009505 TGTTGACTAAATAGGAGATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* **
4009539 TGTTGATTAAATGAGAAATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* *
4009573 TATTGATTAAATGGGTGATTTGGTGGCTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* * *
4009607 TGTTGACTAAAT-GGTAGATTTGGTAGGTTGCCAT
1 TGTTGATTAAATGGGT-GATTTGGTAGCTTACCAT
4009641 TGTTGATTAAATGG
1 TGTTGATTAAATGG
4009655 TGGTTTTTAC
Statistics
Matches: 155, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
33 15 0.10
34 139 0.90
35 1 0.01
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (34 bp):
TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
Found at i:4009573 original size:102 final size:101
Alignment explanation
Indices: 4009438--4009654 Score: 337
Period size: 102 Copynumber: 2.1 Consensus size: 101
4009428 ATATAGTATA
* * * * **
4009438 TGTTGATTAAATGGTAATTTGGTAGTTTACCATTGTTGATTAAATGGGTGATTTGGTGGTTTGTC
1 TGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTACC
4009503 ATTGTTGACTAAATAGG-AGATTTGGTAGCTTACCAT
66 ATTGTTGACTAAAT-GGTAGATTTGGTAGCTTACCAT
4009539 TGTTGATTAAATGAGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTAC
1 TGTTGATTAAATG-GAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTAC
* *
4009604 CATTGTTGACTAAATGGTAGATTTGGTAGGTTGCCAT
65 CATTGTTGACTAAATGGTAGATTTGGTAGCTTACCAT
4009641 TGTTGATTAAATGG
1 TGTTGATTAAATGG
4009655 TGGTTTTTAC
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
101 16 0.15
102 90 0.85
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (101 bp):
TGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTACC
ATTGTTGACTAAATGGTAGATTTGGTAGCTTACCAT
Found at i:4014120 original size:34 final size:34
Alignment explanation
Indices: 4014063--4014279 Score: 258
Period size: 34 Copynumber: 6.4 Consensus size: 34
4014053 AAGTGAGAGA
*
4014063 ATTGTTGATTAAAT-GGTGATTTGGTAGTTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * * *
4014096 ATTGTTAATTAAATGGGTGATTTGGTGGTTTGCC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* *
4014130 ATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * **
4014164 ATTGTTAATTAAATGAGAAATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * *
4014198 ATTATTGATTAAATGGATGATTTGGTGGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * *
4014232 ATTGTTGACTAAAT-GGTAGATTTGGTAGGTTGCC
1 ATTGTTGATTAAATGGGT-GATTTGGTAGCTTACC
4014266 ATTGTTGATTAAAT
1 ATTGTTGATTAAAT
4014280 AGTAGTTTTT
Statistics
Matches: 155, Mismatches: 27, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
33 15 0.10
34 140 0.90
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (34 bp):
ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
Found at i:4014209 original size:102 final size:101
Alignment explanation
Indices: 4014063--4014279 Score: 317
Period size: 102 Copynumber: 2.1 Consensus size: 101
4014053 AAGTGAGAGA
** * * * * *
4014063 ATTGTTGATTAAATGGTGATTTGGTAGTTTACCATTGTTAATTAAATGGGTGATTTGGTGGTTTG
1 ATTGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTAATTAAATGGATGATTTGGTGGCTTA
4014128 CCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
66 CCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
* *
4014164 ATTGTTAATTAAATGAGAAATTTGGTAGCTTACCATTATTGATTAAATGGATGATTTGGTGGCTT
1 ATTGTTGATTAAATG-GAAATTTGGTAGCTTACCATTATTAATTAAATGGATGATTTGGTGGCTT
* * *
4014229 ACCATTGTTGACTAAATGGTAGATTTGGTAGGTTGCC
65 ACCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
4014266 ATTGTTGATTAAAT
1 ATTGTTGATTAAAT
4014280 AGTAGTTTTT
Statistics
Matches: 102, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
101 14 0.14
102 88 0.86
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (101 bp):
ATTGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTAATTAAATGGATGATTTGGTGGCTTA
CCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
Found at i:4015246 original size:24 final size:24
Alignment explanation
Indices: 4015199--4015249 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
4015189 TCTCATGTCT
*
4015199 AAATTTAAAATTATAATTCAAATAA
1 AAATTTAAAATTATAAAT-AAATAA
4015224 AAATTTAAAATATATAAATAATATAA
1 AAATTTAAAAT-TATAAATAA-ATAA
4015250 TATCTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
AAATTTAAAATTATAAATAAATAA
Found at i:4016280 original size:15 final size:17
Alignment explanation
Indices: 4016255--4016298 Score: 65
Period size: 15 Copynumber: 2.7 Consensus size: 17
4016245 GCTCATATAT
4016255 TTTATATTATTTTTT-A
1 TTTATATTATTTTTTCA
*
4016271 TTTA-ATTATTTTTTCC
1 TTTATATTATTTTTTCA
4016287 TTTATATTATTT
1 TTTATATTATTT
4016299 ATAGGCATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 10 0.40
16 8 0.32
17 7 0.28
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTATATTATTTTTTCA
Found at i:4022186 original size:32 final size:32
Alignment explanation
Indices: 4022145--4022220 Score: 143
Period size: 32 Copynumber: 2.4 Consensus size: 32
4022135 CATTTCATAG
4022145 TGTATCGATACATCTAGGCAAATTTGCCTGCA
1 TGTATCGATACATCTAGGCAAATTTGCCTGCA
*
4022177 TGTATCGATACATCTGGGCAAATTTGCCTGCA
1 TGTATCGATACATCTAGGCAAATTTGCCTGCA
4022209 TGTATCGATACA
1 TGTATCGATACA
4022221 AAGATCAGTG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (32 bp):
TGTATCGATACATCTAGGCAAATTTGCCTGCA
Found at i:4023008 original size:29 final size:29
Alignment explanation
Indices: 4022977--4023031 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
4022967 AATCTATTTT
*
4022977 TTTTTAT-AAATTTATAAAAAAAATATCA
1 TTTTTATGAAATTGATAAAAAAAATATCA
* *
4023005 TTTTTATGAAATTGATTAAGAAAATAT
1 TTTTTATGAAATTGATAAAAAAAATAT
4023032 TAATGCAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (29 bp):
TTTTTATGAAATTGATAAAAAAAATATCA
Found at i:4027533 original size:17 final size:17
Alignment explanation
Indices: 4027485--4027534 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
4027475 ATATAAAAAA
4027485 ATTTAT-TTTATATTAAT
1 ATTTATATTTAT-TTAAT
4027502 ATTTATATATT-TTTAAT
1 ATTTATAT-TTATTTAAT
* *
4027519 TTTTGTATTTATTTAA
1 ATTTATATTTATTTAA
4027535 ATATAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 2 0.07
17 22 0.79
18 2 0.07
19 2 0.07
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (17 bp):
ATTTATATTTATTTAAT
Found at i:4030842 original size:18 final size:17
Alignment explanation
Indices: 4030806--4030843 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
4030796 AATCATAATC
4030806 ATATTTTAAAATATTTT
1 ATATTTTAAAATATTTT
4030823 ATATTTATATAAAT-TTTT
1 ATATTT-TA-AAATATTTT
4030841 ATA
1 ATA
4030844 AATTAATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 9 0.47
19 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTTAAAATATTTT
Found at i:4038618 original size:11 final size:10
Alignment explanation
Indices: 4038597--4038629 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 10
4038587 AAAAATTTGT
4038597 AAAA-AAAAA
1 AAAAGAAAAA
4038606 AAAAGAAAGAA
1 AAAAGAAA-AA
4038617 AAAAGAAAAA
1 AAAAGAAAAA
4038627 AAA
1 AAA
4038630 CAGAGGGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 4 0.18
10 8 0.36
11 10 0.45
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:4040421 original size:20 final size:20
Alignment explanation
Indices: 4040398--4040434 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
4040388 ATCAAGTTTA
4040398 AAAAATTAAATT-TTTTAAT
1 AAAAATTAAATTATTTTAAT
4040417 AAAAATTAAATTATTTTA
1 AAAAATTAAATTATTTTA
4040435 TATTAATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AAAAATTAAATTATTTTAAT
Found at i:4040442 original size:19 final size:19
Alignment explanation
Indices: 4040394--4040436 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
4040384 TTTTATCAAG
4040394 TTTA-AAAAATTAAATT-T
1 TTTATAAAAATTAAATTAT
4040411 TTTAATAAAAATTAAATTAT
1 TTT-ATAAAAATTAAATTAT
4040431 TTTATA
1 TTTATA
4040437 TTAATTGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.13
18 1 0.04
19 15 0.65
20 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTATAAAAATTAAATTAT
Found at i:4040544 original size:3 final size:3
Alignment explanation
Indices: 4040536--4040560 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
4040526 AATTAAATAA
4040536 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
4040561 CTTAACCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:4041297 original size:20 final size:20
Alignment explanation
Indices: 4041272--4041316 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
4041262 CATTATATTC
*
4041272 ATATTTT-TTTATTTTATTTT
1 ATATTTTATTTA-TTTATGTT
4041292 ATATTTTATTTATTTATGTT
1 ATATTTTATTTATTTATGTT
4041312 ATATT
1 ATATT
4041317 ATAAATTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (20 bp):
ATATTTTATTTATTTATGTT
Found at i:4041307 original size:25 final size:26
Alignment explanation
Indices: 4041250--4041319 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 26
4041240 AATCATAAAT
* *
4041250 TTTAATTA-GTTACATTATATTCATA
1 TTTATTTATGTTATATTATATTCATA
* * * *
4041275 TTTTTTTATTTTATTTTATATT-TTA
1 TTTATTTATGTTATATTATATTCATA
4041300 TTTATTTATGTTATATTATA
1 TTTATTTATGTTATATTATA
4041320 AATTTATTCA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
25 25 0.71
26 10 0.29
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (26 bp):
TTTATTTATGTTATATTATATTCATA
Found at i:4042969 original size:22 final size:20
Alignment explanation
Indices: 4042943--4042999 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 20
4042933 ATGTAATGGG
4042943 TAAATTTAATTTATTCATAAA
1 TAAATTTAATTTATT-ATAAA
* *
4042964 TTAAATTAAATTATAATATAAA
1 -TAAATTTAATT-TATTATAAA
4042986 -AAATTTAAATTTAT
1 TAAATTT-AATTTAT
4043000 ATTTAAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
20 7 0.24
21 4 0.14
22 15 0.52
23 3 0.10
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
TAAATTTAATTTATTATAAA
Found at i:4044811 original size:2 final size:2
Alignment explanation
Indices: 4044804--4044831 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4044794 TAGTCGGTGT
4044804 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4044832 CTTCTTGGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4055923 original size:17 final size:18
Alignment explanation
Indices: 4055901--4055935 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
4055891 AACTTTTTTT
4055901 TTTTTTTATATT-ACAAA
1 TTTTTTTATATTAACAAA
*
4055918 TTTTTTTGTATTAACAAA
1 TTTTTTTATATTAACAAA
4055936 ATATCTAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTTTTTATATTAACAAA
Found at i:4063051 original size:22 final size:21
Alignment explanation
Indices: 4063026--4063122 Score: 78
Period size: 22 Copynumber: 4.6 Consensus size: 21
4063016 CTTAAAAATT
*
4063026 TAAATTTAAATATTAATTATAA
1 TAAATATAAATATTAA-TATAA
4063048 TAAATATAAA-ATT-ATAT-A
1 TAAATATAAATATTAATATAA
* *
4063066 -AAATCTTACATA-TAATTATAA
1 TAAAT-ATAAATATTAA-TATAA
*
4063087 TAAATAAAAATATTAATATAATA
1 TAAATATAAATATTAATAT-A-A
4063110 TAAATATAAATAT
1 TAAATATAAATAT
4063123 ATTCATTGAT
Statistics
Matches: 59, Mismatches: 7, Indels: 17
0.71 0.08 0.20
Matches are distributed among these distances:
17 4 0.07
18 5 0.08
19 5 0.08
20 4 0.07
21 11 0.19
22 17 0.29
23 13 0.22
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
TAAATATAAATATTAATATAA
Found at i:4063104 original size:6 final size:6
Alignment explanation
Indices: 4063086--4063123 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
4063076 TATAATTATA
* *
4063086 ATAAAT AAAAAT ATTAAT AT-AAT ATAAAT ATAAAT ATA
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATA
4063124 TTCATTGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
ATAAAT
Found at i:4063260 original size:39 final size:39
Alignment explanation
Indices: 4063202--4063280 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
4063192 AGGCAACTTA
4063202 TGTCATTATTTATTATTTTATTAAATAATTAAATCTGAC
1 TGTCATTATTTATTATTTTATTAAATAATTAAATCTGAC
* *
4063241 TGTCATTATTTATTGTTTTATTAAATAATTACATCTGAC
1 TGTCATTATTTATTATTTTATTAAATAATTAAATCTGAC
4063280 T
1 T
4063281 ATACACATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.52
Consensus pattern (39 bp):
TGTCATTATTTATTATTTTATTAAATAATTAAATCTGAC
Found at i:4063537 original size:11 final size:10
Alignment explanation
Indices: 4063489--4063542 Score: 58
Period size: 9 Copynumber: 5.4 Consensus size: 10
4063479 AATATTTCAC
4063489 ATAATATAAA
1 ATAATATAAA
4063499 A-AATATAAA
1 ATAATATAAA
*
4063508 A-AATATAAT
1 ATAATATAAA
*
4063517 ATAATTTAAAA
1 ATAATAT-AAA
4063528 ATAATATAAA
1 ATAATATAAA
4063538 TATAA
1 -ATAA
4063543 AATATTTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 17 0.46
10 8 0.22
11 12 0.32
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
ATAATATAAA
Found at i:4063538 original size:27 final size:26
Alignment explanation
Indices: 4063497--4063569 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 26
4063487 ACATAATATA
*
4063497 AAAAATATAAAAAATATAATATAATTT
1 AAAAATAT-ATAAATATAATATAATTT
* *
4063524 AAAAATAATATAAATATAAAATATTTT
1 AAAAAT-ATATAAATATAATATAATTT
*
4063551 AAAAATTTATAAATATAAT
1 AAAAATATATAAATATAAT
4063570 TTATTAATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
26 11 0.28
27 27 0.68
28 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (26 bp):
AAAAATATATAAATATAATATAATTT
Found at i:4063544 original size:16 final size:16
Alignment explanation
Indices: 4063491--4063546 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
4063481 TATTTCACAT
4063491 AATATAAAA-AATATA
1 AATATAAAATAATATA
*
4063506 AA-A-AATATAATAT-
1 AATATAAAATAATATA
*
4063519 AATTTAAAAATAATATA
1 AATAT-AAAATAATATA
4063536 AATATAAAATA
1 AATATAAAATA
4063547 TTTTAAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 9
0.71 0.09 0.20
Matches are distributed among these distances:
13 5 0.16
14 6 0.19
15 2 0.06
16 15 0.47
17 4 0.12
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AATATAAAATAATATA
Found at i:4063597 original size:47 final size:45
Alignment explanation
Indices: 4063490--4063609 Score: 125
Period size: 48 Copynumber: 2.6 Consensus size: 45
4063480 ATATTTCACA
* *
4063490 TAATATAAAAAATATAAAAAATATAATATAATTTAAAAATAATAT
1 TAATATAAAAATTTTAAAAAATATAATATAATTTAAAAATAATAT
* * **
4063535 AAATATAAAATATTTTAAAAATTTATAAATATAATTTATTAAT-ATAT
1 TAATATAAAA-ATTTTAAAAA-ATAT-AATATAATTTAAAAATAATAT
4063582 TAATATATAAAATTTTATATAAAATATA
1 TAATATA-AAAATTTTA-A-AAAATATA
4063610 TAATATTTTA
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
45 9 0.15
46 8 0.13
47 20 0.33
48 21 0.34
49 3 0.05
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (45 bp):
TAATATAAAAATTTTAAAAAATATAATATAATTTAAAAATAATAT
Found at i:4063610 original size:23 final size:21
Alignment explanation
Indices: 4063583--4063634 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
4063573 TTAATATATT
*
4063583 AATATATAAAATTTTATATAA
1 AATATATAAAATTTTAAATAA
*
4063604 AATATATAATATTTTAAATAA
1 AATATATAAAATTTTAAATAA
*
4063625 AAAATATAAA
1 AATATATAAA
4063635 TGCAATCTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
AATATATAAAATTTTAAATAA
Found at i:4063796 original size:38 final size:37
Alignment explanation
Indices: 4063754--4063855 Score: 98
Period size: 38 Copynumber: 2.6 Consensus size: 37
4063744 TTTTTAAAAA
4063754 AATTATTATTTAAAAAATTAAAATATTTTTATATTAAC
1 AATTATTATTTAAAAAATTAAAATATTTTTAT-TTAAC
* * * *
4063792 AATTATATATTT-TATAATTAAATTTATTTTTATTTAAT
1 AATTAT-TATTTAAAAAATTAAA-ATATTTTTATTTAAC
* *
4063830 AAATATTAATTTAAATAAAATAAAAT
1 AATTATT-ATTTAAA-AAATTAAAAT
4063856 TATTATATTT
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
37 1 0.02
38 27 0.54
39 16 0.32
40 6 0.12
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (37 bp):
AATTATTATTTAAAAAATTAAAATATTTTTATTTAAC
Found at i:4063818 original size:21 final size:20
Alignment explanation
Indices: 4063776--4063828 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
4063766 AAAAATTAAA
4063776 ATATTTTTATATTAACAATT
1 ATATTTTTATATTAACAATT
4063796 ATATATTTTATAATT-A-AATT
1 ATAT-TTTTAT-ATTAACAATT
4063816 -TATTTTTAT-TTAA
1 ATATTTTTATATTAA
4063829 TAAATATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
16 2 0.07
17 1 0.03
18 6 0.20
19 3 0.10
20 8 0.27
21 7 0.23
22 3 0.10
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (20 bp):
ATATTTTTATATTAACAATT
Found at i:4064237 original size:12 final size:11
Alignment explanation
Indices: 4064189--4064491 Score: 95
Period size: 11 Copynumber: 27.2 Consensus size: 11
4064179 ATAATTTAAG
*
4064189 ATATTATTAA-
1 ATATTATAAAT
*
4064199 ATGTTATAAAT
1 ATATTATAAAT
* *
4064210 ATATGATTAA-
1 ATATTATAAAT
4064220 ATATTATAAAT
1 ATATTATAAAT
4064231 ATGATTATTAAA-
1 AT-ATTA-TAAAT
* *
4064243 GTATT-TGAAT
1 ATATTATAAAT
4064253 ATATTATAAAAT
1 ATATTAT-AAAT
*
4064265 ATGTTATTAAGAT
1 ATATTA-TAA-AT
* *
4064278 ATTTTAATAAAC
1 ATATT-ATAAAT
4064290 A-A-T-TAAAT
1 ATATTATAAAT
*
4064298 ATTATTA-AGAT
1 A-TATTATAAAT
4064309 AT-TTCATATTTAAT
1 ATATT-ATA---AAT
*
4064323 -TATTATAAAA
1 ATATTATAAAT
* *
4064333 ATATTTATTATT
1 ATA-TTATAAAT
4064345 AACTATTATAGAAT
1 -A-TATTATA-AAT
4064359 ATATTATTAAA-
1 ATATTA-TAAAT
4064370 ATATTATAAA-
1 ATATTATAAAT
*
4064380 ATATCATTAAA-
1 ATATTA-TAAAT
4064391 ATATTATAAAT
1 ATATTATAAAT
*
4064402 ACATTATTAAA-
1 ATATTA-TAAAT
4064413 ATATT-TAAAT
1 ATATTATAAAT
4064423 ATATTATTAAAT
1 ATATTA-TAAAT
4064435 ACTATTA-AAAT
1 A-TATTATAAAT
* *
4064446 ATTTTTATACAGT
1 A-TATTATA-AAT
*
4064459 A-ATTATTAA-
1 ATATTATAAAT
*
4064468 ATATTGTAAA-
1 ATATTATAAAT
4064478 ATATTATTAAAT
1 ATATTA-TAAAT
4064490 AT
1 AT
4064492 TTGTATGCTT
Statistics
Matches: 218, Mismatches: 37, Indels: 74
0.66 0.11 0.22
Matches are distributed among these distances:
8 5 0.02
9 10 0.05
10 56 0.26
11 62 0.28
12 42 0.19
13 34 0.16
14 9 0.04
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (11 bp):
ATATTATAAAT
Found at i:4064253 original size:22 final size:21
Alignment explanation
Indices: 4064189--4064448 Score: 166
Period size: 21 Copynumber: 12.2 Consensus size: 21
4064179 ATAATTTAAG
*
4064189 ATATTATTAAATGTTATAAAT
1 ATATTATTAAATATTATAAAT
*
4064210 ATATGATTAAATATTATAAAT
1 ATATTATTAAATATTATAAAT
*
4064231 ATGATTATTAAAGTATT-TGAAT
1 AT-ATTATTAAA-TATTATAAAT
*
4064253 ATATTATAAAATATGTTATTAAGAT
1 ATATTATTAAATA--TTA-TAA-AT
* * * *
4064278 ATTTTAATAAACA--ATTAA-
1 ATATTATTAAATATTATAAAT
*
4064296 ATATTATTAAGATATT-T-CAT
1 ATATTATTAA-ATATTATAAAT
* *
4064316 AT-TTAATT-ATTA-TAAAAAT
1 ATATT-ATTAAATATTATAAAT
*
4064335 ATTTATTATTAACTATTATAGAAT
1 A--TATTATTAAATATTATA-AAT
4064359 ATATTATTAAAATATTATAAA-
1 ATATTATT-AAATATTATAAAT
*
4064380 ATATCATTAAAATATTATAAAT
1 ATATTATT-AAATATTATAAAT
*
4064402 ACATTATTAAAATATT-TAAAT
1 ATATTATT-AAATATTATAAAT
*
4064423 ATATTATTAAATACTATTAAA-
1 ATATTATTAAATATTA-TAAAT
4064444 ATATT
1 ATATT
4064449 TTTATACAGT
Statistics
Matches: 189, Mismatches: 26, Indels: 48
0.72 0.10 0.18
Matches are distributed among these distances:
17 1 0.01
18 10 0.05
19 10 0.05
20 16 0.08
21 71 0.38
22 48 0.25
23 16 0.08
24 6 0.03
25 11 0.06
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.45
Consensus pattern (21 bp):
ATATTATTAAATATTATAAAT
Found at i:4064344 original size:26 final size:26
Alignment explanation
Indices: 4064292--4064380 Score: 80
Period size: 26 Copynumber: 3.6 Consensus size: 26
4064282 TAATAAACAA
* *
4064292 TTAAATATTATTAAGATATTTCA-TAT
1 TTAAATATTATAAAAATATTT-ATTAT
*
4064318 TTAATTATTATAAAAATATTTATTA-
1 TTAAATATTATAAAAATATTTATTAT
* *
4064343 TTAACTATTAT-AGAATA--TATTAT
1 TTAAATATTATAAAAATATTTATTAT
*
4064366 TAAAATATTATAAAA
1 TTAAATATTATAAAA
4064381 TATCATTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
22 5 0.10
23 9 0.17
24 7 0.13
25 11 0.21
26 20 0.38
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.47
Consensus pattern (26 bp):
TTAAATATTATAAAAATATTTATTAT
Found at i:4064396 original size:32 final size:32
Alignment explanation
Indices: 4064170--4064492 Score: 142
Period size: 33 Copynumber: 10.1 Consensus size: 32
4064160 TTTTATATTA
* *
4064170 ATTATTAAAATAAT-TTAAGATATTATTAAAT
1 ATTATTAAAATATTATTAAAATATTATTAAAT
* * *
4064201 GTTA-TAAATATATGATT-AAATATTATAAATAT
1 ATTATTAAA-ATATTATTAAAATATTATTAA-AT
* * * *
4064233 GATTATTAAAGTATT-TGAATATATTATAAAAT
1 -ATTATTAAAATATTATTAAAATATTATTAAAT
* **
4064265 ATGTTATTAAGATATT-TTAATAA-ACAATTAAAT
1 A--TTATTAAAATATTATTAA-AATATTATTAAAT
* * *
4064298 ATTATTAAGATA-T-TT--CATA-T-TTAATT
1 ATTATTAAAATATTATTAAAATATTATTAAAT
* * *
4064324 ATTATAAAAATATTTATTATTAACTATTATAGAATAT
1 ATTATTAAAATA-TTATTA--AAATATTAT-TAA-AT
*
4064361 ATTATTAAAATATTA-TAAAATATCATTAAAAT
1 ATTATTAAAATATTATTAAAATATTATT-AAAT
* *
4064393 ATTA-TAAATACATTATTAAAATATT-TAAATAT
1 ATTATTAAA-ATATTATTAAAATATTATTAA-AT
* *
4064425 ATTATT-AAATACTATTAAAATATTTTTATACAGT
1 ATTATTAAAATATTATTAAAATATTATTA-A-A-T
*
4064459 AATTATT-AAATATT-GTAAAATATTATTAAAT
1 -ATTATTAAAATATTATTAAAATATTATTAAAT
4064490 ATT
1 ATT
4064493 TGTATGCTTT
Statistics
Matches: 222, Mismatches: 40, Indels: 61
0.69 0.12 0.19
Matches are distributed among these distances:
26 15 0.07
27 1 0.00
28 2 0.01
29 2 0.01
30 10 0.05
31 49 0.22
32 30 0.14
33 62 0.28
34 19 0.09
35 15 0.07
36 5 0.02
37 12 0.05
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (32 bp):
ATTATTAAAATATTATTAAAATATTATTAAAT
Found at i:4064408 original size:43 final size:45
Alignment explanation
Indices: 4064346--4064446 Score: 138
Period size: 43 Copynumber: 2.3 Consensus size: 45
4064336 TTTATTATTA
*
4064346 ACTATTATAGAATATATTATTAAAATATTATAAA-ATATCATTAAA-
1 ACTATTATA-AATACATTATTAAAATATT-TAAATATATCATTAAAT
*
4064391 A-TATTATAAATACATTATTAAAATATTTAAATATATTATTAAAT
1 ACTATTATAAATACATTATTAAAATATTTAAATATATCATTAAAT
4064435 ACTATTA-AAATA
1 ACTATTATAAATA
4064447 TTTTTATACA
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
42 4 0.08
43 28 0.55
44 13 0.25
45 6 0.12
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (45 bp):
ACTATTATAAATACATTATTAAAATATTTAAATATATCATTAAAT
Found at i:4064519 original size:10 final size:10
Alignment explanation
Indices: 4064504--4064556 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
4064494 GTATGCTTTT
4064504 AATATTATTA
1 AATATTATTA
4064514 AATATTATT-
1 AATATTATTA
4064523 -AT-TTATTA
1 AATATTATTA
*
4064531 AATATTAATAA
1 AATATT-ATTA
4064542 AATACTT-TTA
1 AATA-TTATTA
4064552 AATAT
1 AATAT
4064557 ATACTATTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
7 5 0.14
8 2 0.06
9 3 0.08
10 17 0.47
11 7 0.19
12 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (10 bp):
AATATTATTA
Found at i:4064534 original size:27 final size:27
Alignment explanation
Indices: 4064476--4064542 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
4064466 AAATATTGTA
4064476 AAATATTATTAAATATTTGTATGCTTTT
1 AAATATTATTAAATATTTGTAT-CTTTT
4064504 -AATATTATTAAATATTAT-TAT-TTATT
1 AAATATTATTAAATATT-TGTATCTT-TT
*
4064530 AAATATTAATAAA
1 AAATATTATTAAA
4064543 ATACTTTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
25 2 0.06
26 2 0.06
27 30 0.86
28 1 0.03
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (27 bp):
AAATATTATTAAATATTTGTATCTTTT
Found at i:4065248 original size:18 final size:17
Alignment explanation
Indices: 4065218--4065251 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
4065208 GCTAATGGCT
4065218 GAGACCACCGGCACAGA
1 GAGACCACCGGCACAGA
*
4065235 GAGATCCACTGGCACAG
1 GAGA-CCACCGGCACAG
4065252 TCAAATGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.32, C:0.32, G:0.29, T:0.06
Consensus pattern (17 bp):
GAGACCACCGGCACAGA
Found at i:4069626 original size:2 final size:2
Alignment explanation
Indices: 4069621--4069656 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4069611 GTATTTGATA
4069621 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4069657 GGAGAAAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4071031 original size:21 final size:23
Alignment explanation
Indices: 4070993--4071035 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
4070983 CCCTTTCAAT
4070993 TATTTTTTTAAATATAAATTTTAC
1 TATTTTTTT-AATATAAATTTTAC
4071017 TATTTTTTT-AT-TAAATTTT
1 TATTTTTTTAATATAAATTTT
4071036 TGTTAAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 2 0.11
24 9 0.47
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (23 bp):
TATTTTTTTAATATAAATTTTAC
Found at i:4071393 original size:24 final size:25
Alignment explanation
Indices: 4071322--4071393 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 25
4071312 ACACTAAAAG
* *
4071322 TAAATTTAATTTA-ATTTATTTATA
1 TAAATTTAAATTATATATATTTATA
*
4071346 TAAATTTTTTAAAATATATAATATTTA-A
1 TAAA---TTTAAATTATAT-ATATTTATA
4071374 TAAATTTAAATTATATATAT
1 TAAATTTAAATTATATATAT
4071394 ATTTTTAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
24 8 0.21
25 11 0.28
27 7 0.18
28 7 0.18
29 6 0.15
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TAAATTTAAATTATATATATTTATA
Found at i:4071916 original size:21 final size:21
Alignment explanation
Indices: 4071887--4071926 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
4071877 TTTATTTTTT
*
4071887 AAATAAAAATTTATAAATAAA
1 AAATAAAAATTTAAAAATAAA
*
4071908 AAATTAAAATTTAAAAATA
1 AAATAAAAATTTAAAAATA
4071927 TTTTATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (21 bp):
AAATAAAAATTTAAAAATAAA
Found at i:4071938 original size:45 final size:45
Alignment explanation
Indices: 4071882--4071996 Score: 121
Period size: 45 Copynumber: 2.5 Consensus size: 45
4071872 TAATATTTAT
4071882 TTTTTAAATAAAAATTTATAAATAAA-AAATTAAAATTTAA-AAA
1 TTTTTAAATAAAAATTTATAAATAAATAAATTAAAATTTAATAAA
* * *
4071925 TATTTTATAATAAATAA-TTAT-ATTAAATTAATTATAATTTAATAAA
1 T-TTTTA-AATAAA-AATTTATAAATAAATAAATTAAAATTTAATAAA
*
4071971 TTTTTAAATATTAAAATTTTTAAATA
1 TTTTTAAATA--AAAATTTATAAATA
4071997 TATATATATT
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
43 1 0.02
44 14 0.24
45 29 0.50
46 11 0.19
47 3 0.05
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (45 bp):
TTTTTAAATAAAAATTTATAAATAAATAAATTAAAATTTAATAAA
Found at i:4071951 original size:13 final size:14
Alignment explanation
Indices: 4071929--4071962 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
4071919 TAAAAATATT
4071929 TTATAATAAA-TAA
1 TTATAATAAATTAA
*
4071942 TTATATTAAATTAA
1 TTATAATAAATTAA
4071956 TTATAAT
1 TTATAAT
4071963 TTAATAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TTATAATAAATTAA
Found at i:4078218 original size:14 final size:15
Alignment explanation
Indices: 4078159--4078219 Score: 65
Period size: 15 Copynumber: 4.1 Consensus size: 15
4078149 ATGATATTAA
4078159 ATTTTATAATTTATAT
1 ATTTTAT-ATTTATAT
4078175 A-TTTATATCTTAT-T
1 ATTTTATAT-TTATAT
*
4078189 ATATTATATTTAATAT
1 ATTTTATATTT-ATAT
4078205 ATTTTA-ATTTATAT
1 ATTTTATATTTATAT
4078219 A
1 A
4078220 AAATTTAATG
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 11 0.28
15 21 0.54
16 7 0.18
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTTATATTTATAT
Found at i:4078225 original size:26 final size:27
Alignment explanation
Indices: 4078187--4078247 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
4078177 TTATATCTTA
* *
4078187 TTATATTATATTTAATAT-ATTTTAAT
1 TTATATAAAATTTAATATGATTTTAAT
* *
4078213 TTATATAAAATTTAATGTGTTTTTAAT
1 TTATATAAAATTTAATATGATTTTAAT
4078240 TTATATAA
1 TTATATAA
4078248 TATAATTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 15 0.50
27 15 0.50
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (27 bp):
TTATATAAAATTTAATATGATTTTAAT
Found at i:4078313 original size:15 final size:15
Alignment explanation
Indices: 4078290--4078326 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
4078280 TATTTTATAT
*
4078290 ATTTTATATAATTAA
1 ATTTAATATAATTAA
*
4078305 ATTTAATATTATTAA
1 ATTTAATATAATTAA
4078320 ATTTAAT
1 ATTTAAT
4078327 TGATATATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTAATATAATTAA
Found at i:4078914 original size:33 final size:32
Alignment explanation
Indices: 4078876--4078938 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
4078866 TAAATTATAA
**
4078876 TTTAAAATTTTTTTAAATTTTAATTTAATTAAG
1 TTTAAAATAATTTTAAA-TTTAATTTAATTAAG
*
4078909 TTTAAAATAATTTTAAATTTAATTTTATTA
1 TTTAAAATAATTTTAAATTTAATTTAATTA
4078939 TTTATGATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (32 bp):
TTTAAAATAATTTTAAATTTAATTTAATTAAG
Found at i:4078983 original size:24 final size:23
Alignment explanation
Indices: 4078933--4079010 Score: 66
Period size: 24 Copynumber: 3.3 Consensus size: 23
4078923 AAATTTAATT
* *
4078933 TTATTATTTATGATAATATTAAAAA
1 TTATT-TTTAT-ATAATATTTATAA
4078958 TTATTTTTATATTAATATTTATAA
1 TTATTTTTATA-TAATATTTATAA
** * * *
4078982 TTAAATTTAAATAATATTTTTTA
1 TTATTTTTATATAATATTTATAA
4079005 TTATTT
1 TTATTT
4079011 ACATAATAAT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
23 15 0.35
24 23 0.53
25 5 0.12
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (23 bp):
TTATTTTTATATAATATTTATAA
Found at i:4081223 original size:2 final size:2
Alignment explanation
Indices: 4081216--4081259 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
4081206 ACCTAGAATT
4081216 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4081258 TA
1 TA
4081260 ATTGATATAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4084896 original size:36 final size:33
Alignment explanation
Indices: 4084856--4084933 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 33
4084846 AATAAAATAT
* * *
4084856 TAAAAAATTATTTATATTTTTATAATTAAATTTAAA
1 TAAAAAATTATAT-TA-TTTTA-AATAAAATTAAAA
4084892 T-AAAAA-TATATTATTTTAAATAAAATTAAAA
1 TAAAAAATTATATTATTTTAAATAAAATTAAAA
4084923 TATAAAAATTA
1 TA-AAAAATTA
4084934 AAACTCAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
31 12 0.33
32 5 0.14
33 7 0.19
34 6 0.17
35 5 0.14
36 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (33 bp):
TAAAAAATTATATTATTTTAAATAAAATTAAAA
Found at i:4087534 original size:20 final size:20
Alignment explanation
Indices: 4087509--4087548 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
4087499 GAGAAAAGAA
4087509 AATGAAAGATATCTGAGTTT
1 AATGAAAGATATCTGAGTTT
* *
4087529 AATGAAAGATTTTTGAGTTT
1 AATGAAAGATATCTGAGTTT
4087549 GAGTGCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.20, T:0.40
Consensus pattern (20 bp):
AATGAAAGATATCTGAGTTT
Found at i:4090448 original size:17 final size:17
Alignment explanation
Indices: 4090426--4090495 Score: 68
Period size: 17 Copynumber: 3.8 Consensus size: 17
4090416 AACATTATTG
4090426 TTGAAAAAAATTTAGAT
1 TTGAAAAAAATTTAGAT
*
4090443 TTGAAAAAATTTTAAGTCTAT
1 TTGAAAAAAATTT-AG---AT
*
4090464 TTTAACATAAAATTTAGAT
1 TTGAA-A-AAAATTTAGAT
4090483 TTGAAAAAAATTT
1 TTGAAAAAAATTT
4090496 TAACTTCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
17 19 0.44
18 3 0.07
19 6 0.14
21 6 0.14
22 3 0.07
23 6 0.14
ACGTcount: A:0.49, C:0.03, G:0.09, T:0.40
Consensus pattern (17 bp):
TTGAAAAAAATTTAGAT
Found at i:4093140 original size:23 final size:23
Alignment explanation
Indices: 4093114--4093160 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
4093104 TACTCAAATC
* *
4093114 TTTATTAATTATAAAAAATTATA
1 TTTATAAATAATAAAAAATTATA
**
4093137 TTTATAAATAATAATTAATTATA
1 TTTATAAATAATAAAAAATTATA
4093160 T
1 T
4093161 ATTACAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TTTATAAATAATAAAAAATTATA
Found at i:4093170 original size:25 final size:24
Alignment explanation
Indices: 4093130--4093180 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
4093120 AATTATAAAA
*
4093130 AATTATATTTATAAATAAT-AATT
1 AATTATATTTAAAAATAATCAATT
4093153 AATTATATATTACAAAATAATCAATT
1 AATTATAT-TTA-AAAATAATCAATT
4093179 AA
1 AA
4093181 AAAATTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 8 0.33
24 3 0.12
25 7 0.29
26 6 0.25
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (24 bp):
AATTATATTTAAAAATAATCAATT
Found at i:4095245 original size:19 final size:20
Alignment explanation
Indices: 4095210--4095247 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4095200 ATATTAAAAA
*
4095210 TTATATAAATATATAATATC
1 TTATAAAAATATATAATATC
4095230 TTATAAAAAT-TATAATAT
1 TTATAAAAATATATAATAT
4095248 GAAAAAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TTATAAAAATATATAATATC
Found at i:4104429 original size:2 final size:2
Alignment explanation
Indices: 4104417--4104456 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
4104407 TCTTTAATTT
*
4104417 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4104457 CACACATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4106135 original size:18 final size:17
Alignment explanation
Indices: 4106112--4106147 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
4106102 TTTATATCTC
*
4106112 TATATCTAATATCGAATA
1 TATATCAAATA-CGAATA
4106130 TATATCAAATACGAATA
1 TATATCAAATACGAATA
4106147 T
1 T
4106148 TTTATAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.36
Consensus pattern (17 bp):
TATATCAAATACGAATA
Found at i:4107325 original size:13 final size:13
Alignment explanation
Indices: 4107307--4107334 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
4107297 ACAAAAAGAC
4107307 CTAGCTAATTCAA
1 CTAGCTAATTCAA
4107320 CTAGCTAATTCAA
1 CTAGCTAATTCAA
4107333 CT
1 CT
4107335 CGACATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (13 bp):
CTAGCTAATTCAA
Found at i:4107619 original size:12 final size:12
Alignment explanation
Indices: 4107587--4107620 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
4107577 AAAAAAAAAG
* *
4107587 CAACAACAACAT
1 CAACAACAGCAA
4107599 CAACAACAGCAA
1 CAACAACAGCAA
4107611 CAACAACAGC
1 CAACAACAGC
4107621 GAAAGCAGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.35, G:0.06, T:0.03
Consensus pattern (12 bp):
CAACAACAGCAA
Found at i:4107959 original size:17 final size:17
Alignment explanation
Indices: 4107926--4107987 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
4107916 TTTAACACGA
* *
4107926 TATATTAATATTATATC
1 TATATTATTTTTATATC
*
4107943 TATATTATTTTTGTATC
1 TATATTATTTTTATATC
*
4107960 -ATATCATATTTTATATC
1 TATATTAT-TTTTATATC
*
4107977 GTATTTTATTT
1 -TATATTATTT
4107988 ATTTAATTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
16 6 0.17
17 22 0.63
18 2 0.06
19 5 0.14
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (17 bp):
TATATTATTTTTATATC
Found at i:4109617 original size:3 final size:3
Alignment explanation
Indices: 4109609--4109643 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
4109599 TTCTCCTAAA
4109609 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
4109644 GTTACAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:4109807 original size:36 final size:34
Alignment explanation
Indices: 4109749--4109824 Score: 84
Period size: 36 Copynumber: 2.2 Consensus size: 34
4109739 ATTTTTTTAA
* *
4109749 TTTTATAAATAAAATTATAAAAT-TAT-TATATATT
1 TTTTAAAAATAAAATTAAAAAATATATAT-TA-ATT
4109783 TTTTAAAAATATAAATTTAAAAAATATATATTAATT
1 TTTTAAAAATA-AAA-TTAAAAAATATATATTAATT
4109819 TTTTAA
1 TTTTAA
4109825 TTTACTCGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
34 10 0.28
35 3 0.08
36 17 0.47
37 5 0.14
38 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (34 bp):
TTTTAAAAATAAAATTAAAAAATATATATTAATT
Found at i:4109813 original size:34 final size:36
Alignment explanation
Indices: 4109749--4109824 Score: 88
Period size: 34 Copynumber: 2.2 Consensus size: 36
4109739 ATTTTTTTAA
* *
4109749 TTTTATAAATAAAATTATAAAATTATTATA-T-ATT
1 TTTTAAAAATAAAATTATAAAAATATTATATTAATT
4109783 TTTTAAAAATATAAATT-TAAAAA-ATATATATTAATT
1 TTTTAAAAATA-AAATTATAAAAATAT-TATATTAATT
4109819 TTTTAA
1 TTTTAA
4109825 TTTACTCGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
33 2 0.06
34 19 0.53
35 6 0.17
36 9 0.25
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (36 bp):
TTTTAAAAATAAAATTATAAAAATATTATATTAATT
Done.