Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold711
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68118
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:3791 original size:23 final size:22
Alignment explanation
Indices: 3763--3809 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
3753 TTTTGATCTC
*
3763 TTGAGCTGGTGTCCTTTCTCTTT
1 TTGAGCTGGTGTCCATTCT-TTT
*
3786 TTGAGCTGTTGTCCATTCTTTT
1 TTGAGCTGGTGTCCATTCTTTT
3808 TT
1 TT
3810 ATATTCTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.06, C:0.19, G:0.19, T:0.55
Consensus pattern (22 bp):
TTGAGCTGGTGTCCATTCTTTT
Found at i:4200 original size:15 final size:14
Alignment explanation
Indices: 4166--4205 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
4156 GTAGCAGCTT
4166 TAATGC-ATGAAAG
1 TAATGCAATGAAAG
*
4179 CAATGCAATGAAATG
1 TAATGCAATGAAA-G
4194 TAATGCAATGAA
1 TAATGCAATGAA
4206 TGAAATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 5 0.22
14 6 0.26
15 12 0.52
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (14 bp):
TAATGCAATGAAAG
Found at i:12244 original size:28 final size:29
Alignment explanation
Indices: 12208--12262 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
12198 CAAAGTTCAC
* * *
12208 ACAAGTCAATGGCATCC-TTTCAAAGTCT
1 ACAAATCAATAGCACCCTTTTCAAAGTCT
12236 ACAAATCAATAGCACCCTTTTCAAAGT
1 ACAAATCAATAGCACCCTTTTCAAAGT
12263 GCATAAATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 14 0.61
29 9 0.39
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.27
Consensus pattern (29 bp):
ACAAATCAATAGCACCCTTTTCAAAGTCT
Found at i:12279 original size:29 final size:28
Alignment explanation
Indices: 12208--12297 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 28
12198 CAAAGTTCAC
* *
12208 ACAAGTCAATGGCATCCTTTCAAAGTCT
1 ACAAATCAATGGCACCCTTTCAAAGTCT
*
12236 ACAAATCAATAGCACCCTTTTCAAAGTGC-
1 ACAAATCAATGGCACCC-TTTCAAAGT-CT
* * *
12265 ATAAATCATTGGCACCTCATTCAAA-TCT
1 ACAAATCAATGGCACC-CTTTCAAAGTCT
12293 CACAA
1 -ACAA
12298 GTTAGTGGCA
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
27 1 0.02
28 15 0.31
29 31 0.63
30 2 0.04
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (28 bp):
ACAAATCAATGGCACCCTTTCAAAGTCT
Found at i:12306 original size:29 final size:29
Alignment explanation
Indices: 12274--12439 Score: 156
Period size: 29 Copynumber: 5.8 Consensus size: 29
12264 CATAAATCAT
* * *
12274 TGGCACCTCATTCAAATCTCACAAGTTAG
1 TGGCACCTCTTTCAAAGCCCACAAGTTAG
* * * *
12303 TGGCACCCCTTTTAAAGGCCACAAGTCAG
1 TGGCACCTCTTTCAAAGCCCACAAGTTAG
* * * *
12332 TAGCATCTTTTTTAAAGCCCACAAGTTAG
1 TGGCACCTCTTTCAAAGCCCACAAGTTAG
* * * *
12361 TGTCACCTTTTTCAAAGCCCACAAGTCAA
1 TGGCACCTCTTTCAAAGCCCACAAGTTAG
12390 TGGCACC-CTTTTCAAAGCCCACAAGTTAG
1 TGGCACCTC-TTTCAAAGCCCACAAGTTAG
* *
12419 TGGCACCT-TTTTAAAGGCCAC
1 TGGCACCTCTTTCAAAGCCCAC
12440 CAATACTAAT
Statistics
Matches: 110, Mismatches: 25, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
28 11 0.10
29 99 0.90
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCACCTCTTTCAAAGCCCACAAGTTAG
Found at i:12309 original size:58 final size:57
Alignment explanation
Indices: 12207--12436 Score: 189
Period size: 58 Copynumber: 4.0 Consensus size: 57
12197 CCAAAGTTCA
* * * * * * *
12207 CACAAGTCAATGGCATC-CTTTCAAAGTCTACAAATCAATAGCACCCTTTTCAAAGTG
1 CACAAGTCAATGGCACCTCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTTCAAAG-G
* * * * * *
12264 CATAAATCATTGGCACCTCATTCAAATCTCACAAGTTAGTGGCACCCCTTTT-AAAGG
1 CACAAGTCAATGGCACCTCTTTCAAAGCCCACAAGTTAGTGGCA-CCCTTTTCAAAGG
* * * * * * * *
12321 CCACAAGTCAGTAGCATCTTTTTTAAAGCCCACAAGTTAGTGTCACCTTTTTCAAAGCC
1 -CACAAGTCAATGGCACCTCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTTCAAAG-G
*
12380 CACAAGTCAATGGCACC-CTTTTCAAAGCCCACAAGTTAGTGGCA-CCTTTTTAAAGG
1 CACAAGTCAATGGCACCTC-TTTCAAAGCCCACAAGTTAGTGGCACCCTTTTCAAAGG
12436 C
1 C
12437 CACCAATACT
Statistics
Matches: 132, Mismatches: 35, Indels: 13
0.73 0.19 0.07
Matches are distributed among these distances:
56 1 0.01
57 29 0.22
58 95 0.72
59 7 0.05
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (57 bp):
CACAAGTCAATGGCACCTCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTTCAAAGG
Found at i:12944 original size:78 final size:79
Alignment explanation
Indices: 12800--12999 Score: 222
Period size: 78 Copynumber: 2.5 Consensus size: 79
12790 TGGTGGCATC
* * * * ***
12800 TCTTTCTAAGCCCAATGTCATTGGCCTTGAATTAGCACATTGGCATTCGGCCATAGTCATGGGGC
1 TCTTTCTAAGCCCAATGTCATTGGCCTTGAATCAACACATTGGCATTCGACCATAATCACACGGC
*
12865 ATCTATC-AAACTT
66 ATCTATCAAAACCT
* * * *
12878 TTTTTCTAAGCCCAATGTCATTGGCCTTAAATCAACACATTGGCATTCTACCCTAATCACACGGC
1 TCTTTCTAAGCCCAATGTCATTGGCCTTGAATCAACACATTGGCATTCGACCATAATCACACGGC
*
12943 ATCTGTCAAAACCT
66 ATCTATCAAAACCT
* ** ** *
12957 TCTCTCTAAAACCAATGTCGCTGGCCATGAATCAACACATTGG
1 TCTTTCTAAGCCCAATGTCATTGGCCTTGAATCAACACATTGG
13000 TACCCTTATC
Statistics
Matches: 100, Mismatches: 21, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
78 60 0.60
79 40 0.40
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (79 bp):
TCTTTCTAAGCCCAATGTCATTGGCCTTGAATCAACACATTGGCATTCGACCATAATCACACGGC
ATCTATCAAAACCT
Found at i:13145 original size:52 final size:51
Alignment explanation
Indices: 13029--13176 Score: 151
Period size: 52 Copynumber: 2.9 Consensus size: 51
13019 ACCAGTGTGT
* *
13029 TAGCCTTTGATTAGCACATTGGCACTTTTGTCATATT-TAAGTCCAATAATGC
1 TAGCCTTTGATCAGCACATTGGCACTTTTG-CAT-TTCTAAGTCCAATAATAC
* * * *
13081 TAGTCTTGGATCAACACATTGGCACTTTTGACATTTCTAAGTCTAAT-ATCAC
1 TAGCCTTTGATCAGCACATTGGCACTTTTG-CATTTCTAAGTCCAATAAT-AC
* * *
13133 TGGCCTTTGATCAGCACATTAGCA-TTTT-CATTTCTAAGACCAAT
1 TAGCCTTTGATCAGCACATTGGCACTTTTGCATTTCTAAGTCCAAT
13177 GTTGCTAGCT
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
49 14 0.17
51 8 0.10
52 58 0.73
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (51 bp):
TAGCCTTTGATCAGCACATTGGCACTTTTGCATTTCTAAGTCCAATAATAC
Found at i:13509 original size:52 final size:51
Alignment explanation
Indices: 13453--13647 Score: 147
Period size: 52 Copynumber: 3.7 Consensus size: 51
13443 AACGTCACTG
* * * *
13453 GCCTTGGATCAGCACATTGGCACCCTTGTCATTTATAAGACCAACGTCGTTA
1 GCCTTGGATCAACACATTGGCACCCTTATCATTT-TAAGACTAATGTCGTTA
* * * * * *
13505 GCCTTAGATCAACGCATCGGCATCTTTATCATTTCTAAGACTAGTGTCGTTA
1 GCCTTGGATCAACACATTGGCACCCTTATCATTT-TAAGACTAATGTCGTTA
* * * * * **
13557 GCCATGAATCAACATATTGGTATCCTTATCATCTTTAAGACTAATGTCACTA
1 GCCTTGGATCAACACATTGGCACCCTTATCAT-TTTAAGACTAATGTCGTTA
* * * * * *
13609 GCTTTGGATCAGCATATTGACACCTTTTTCATATTTAAG
1 GCCTTGGATCAACACATTGGCACCCTTATCAT-TTTAAG
13648 TTATATATTA
Statistics
Matches: 110, Mismatches: 32, Indels: 2
0.76 0.22 0.01
Matches are distributed among these distances:
52 108 0.98
53 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (51 bp):
GCCTTGGATCAACACATTGGCACCCTTATCATTTTAAGACTAATGTCGTTA
Found at i:13929 original size:52 final size:52
Alignment explanation
Indices: 13838--14490 Score: 453
Period size: 52 Copynumber: 12.6 Consensus size: 52
13828 ATGTTTGAGT
* * * * * *
13838 CCAATATCACTAGCCTTGGATCAGCATATTAGCATCTTTGTCATTTCTAAGA
1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTTGTCATTTCTAAGA
* * * *
13890 CCAATGTCACTGGCCTTTAATCAGCACATTGGCACCTTTGTAATCTCTAAAA
1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTTGTCATTTCTAAGA
* * * * * *
13942 CTAGTGTCGCTGGCCATGAATTAGCACATTGGCA-CTCTTATCATCTT-TAAGA
1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCT-TTGTCAT-TTCTAAGA
** * * ** * *
13994 CCAATGTCGTTGGCCATAAATCAGCACATTAACACCTTTATCATATT-TAAGT
1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTTGTCAT-TTCTAAGA
* ** *
14046 CCAATATCGTTGGCCTT-AGATCAGCACATTGGCACCTTTGTCATTTCTAAAA
1 CCAATGTCACTGGCCTTGA-ATCAGCACATTGGCACCTTTGTCATTTCTAAGA
* * * * * *
14098 CTAATGTCACTAGCCTTGGATCAGCACATTGGCACTTTTGTTATTTATAAGA
1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTTGTCATTTCTAAGA
** * * * *
14150 CCAATGTCGTTGGCCTTGGATCAGCACATTGTCTCCCTTT-TCATTTCTAAAA
1 CCAATGTCACTGGCCTTGAATCAGCACATTGGC-ACCTTTGTCATTTCTAAGA
* * * * * *
14202 CTAATATCACTAGCCTTGAATCAGCATATTGGCACCTTTGT-TTATTCTAAGT
1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTTGTCAT-TTCTAAGA
* * * * * * * * *
14254 CTAGTGTCGCTAGCCATGAATTAGCACATTGGCACCCTTATCATCTT-TAAAA
1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTTGTCAT-TTCTAAGA
* * * * * *
14306 CTAATGT-ATCTAGCTTTGGATCAGCACATTGGCACTTTTATCATTTCTAAGA
1 CCAATGTCA-CTGGCCTTGAATCAGCACATTGGCACCTTTGTCATTTCTAAGA
* * * *
14358 CCAATGTCACTGGCCTTCG-ATCAGTACATTGGCTCCTTTGTCATCTCTAAAA
1 CCAATGTCACTGGCCTT-GAATCAGCACATTGGCACCTTTGTCATTTCTAAGA
* * ** ** * * *
14410 CTAGTGTCGTTGGCC-AAAATCAGCATATTGGCACCCTTGTCATCTCTAAGA
1 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTTGTCATTTCTAAGA
* * * *
14461 CCAATGTCATTAGCCTTGGATCAACACATT
1 CCAATGTCACTGGCCTTGAATCAGCACATT
14491 AACACATTTG
Statistics
Matches: 467, Mismatches: 118, Indels: 32
0.76 0.19 0.05
Matches are distributed among these distances:
51 52 0.11
52 403 0.86
53 12 0.03
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (52 bp):
CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTTGTCATTTCTAAGA
Found at i:14074 original size:156 final size:156
Alignment explanation
Indices: 13790--14495 Score: 690
Period size: 156 Copynumber: 4.5 Consensus size: 156
13780 ATAAGACCAA
* * ** ** * * * * *
13790 TGTCGTTAGCCATGAATAAGCACATTGATACATTTATCATGTTTGAGTCCAATATCACTAGCCTT
1 TGTCGCTAGCCATGAATCAGCACATTGGCACCCTTATCATCTTTAAGACCAATGTCATTAGCCTT
* * * * *
13855 GGATCAGCATATTAGCATCTTTGTCATTTCTAAGACCAATGTCACTGGCCTTTA-ATCAGCACAT
66 GGATCAGCACATTAACACCTTTATCATTTCTAAGACCAATATCACTGGCC-TTAGATCAGCACAT
*
13919 TGGCACCTTTGTAATCTCTAAAACTAG
130 TGGCACCTTTGTCATCTCTAAAACTAG
* * * * * *
13946 TGTCGCTGGCCATGAATTAGCACATTGGCACTCTTATCATCTTTAAGACCAATGTCGTTGGCCAT
1 TGTCGCTAGCCATGAATCAGCACATTGGCACCCTTATCATCTTTAAGACCAATGTCATTAGCCTT
** * **
14011 AAATCAGCACATTAACACCTTTATCATATT-TAAGTCCAATATCGTTGGCCTTAGATCAGCACAT
66 GGATCAGCACATTAACACCTTTATCAT-TTCTAAGACCAATATCACTGGCCTTAGATCAGCACAT
* *
14075 TGGCACCTTTGTCATTTCTAAAACTAA
130 TGGCACCTTTGTCATCTCTAAAACTAG
* * * ** * * * *
14102 TGTCACTAGCCTTGGATCAGCACATTGGCACTTTTGTTAT-TTATAAGACCAATGTCGTTGGCCT
1 TGTCGCTAGCCATGAATCAGCACATTGGCACCCTTATCATCTT-TAAGACCAATGTCATTAGCCT
** * * * * *
14166 TGGATCAGCACATTGTCTCCCTTT-TCATTTCTAAAACTAATATCACTAGCCTT-GAATCAGCAT
65 TGGATCAGCACATTAAC-ACCTTTATCATTTCTAAGACCAATATCACTGGCCTTAG-ATCAGCAC
* **
14229 ATTGGCACCTTTGTTTAT-TCTAAGTCTAG
128 ATTGGCACCTTTG-TCATCTCTAAAACTAG
* * * *
14258 TGTCGCTAGCCATGAATTAGCACATTGGCACCCTTATCATCTTTAAAACTAATGT-ATCTAGCTT
1 TGTCGCTAGCCATGAATCAGCACATTGGCACCCTTATCATCTTTAAGACCAATGTCAT-TAGCCT
** * * * *
14322 TGGATCAGCACATTGGCACTTTTATCATTTCTAAGACCAATGTCACTGGCCTTCGATCAGTACAT
65 TGGATCAGCACATTAACACCTTTATCATTTCTAAGACCAATATCACTGGCCTTAGATCAGCACAT
*
14387 TGGCTCCTTTGTCATCTCTAAAACTAG
130 TGGCACCTTTGTCATCTCTAAAACTAG
* * * * * *
14414 TGTCGTTGGCCA-AAATCAGCATATTGGCACCCTTGTCATCTCTAAGACCAATGTCATTAGCCTT
1 TGTCGCTAGCCATGAATCAGCACATTGGCACCCTTATCATCTTTAAGACCAATGTCATTAGCCTT
*
14478 GGATCAACACATTAACAC
66 GGATCAGCACATTAACAC
14496 ATTTGTCACC
Statistics
Matches: 445, Mismatches: 92, Indels: 27
0.79 0.16 0.05
Matches are distributed among these distances:
155 72 0.16
156 360 0.81
157 13 0.03
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (156 bp):
TGTCGCTAGCCATGAATCAGCACATTGGCACCCTTATCATCTTTAAGACCAATGTCATTAGCCTT
GGATCAGCACATTAACACCTTTATCATTTCTAAGACCAATATCACTGGCCTTAGATCAGCACATT
GGCACCTTTGTCATCTCTAAAACTAG
Found at i:14545 original size:52 final size:52
Alignment explanation
Indices: 14489--14591 Score: 127
Period size: 52 Copynumber: 2.0 Consensus size: 52
14479 GATCAACACA
* *
14489 TTAACACATTTGTCACCCTTAAGTTTAATATTGCT-GGCCTTGAATTAGCATG
1 TTAACACATATGTCACCCTTAAGTCTAATATTG-TAGGCCTTGAATTAGCATG
* * * * *
14541 TTAACACCTATGTCATCTTTAAGTCTAATGTTGTAGGCCTTGAATTTGCAT
1 TTAACACATATGTCACCCTTAAGTCTAATATTGTAGGCCTTGAATTAGCAT
14592 ATTGGCACAT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
51 1 0.02
52 42 0.98
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (52 bp):
TTAACACATATGTCACCCTTAAGTCTAATATTGTAGGCCTTGAATTAGCATG
Found at i:18239 original size:22 final size:22
Alignment explanation
Indices: 18197--18239 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
18187 AAAAAATTTA
* * *
18197 AAAATAATTTTTTAATTTTTTG
1 AAAATAATTATTAAATATTTTG
18219 AAAATAATTATTAAATATTTT
1 AAAATAATTATTAAATATTTT
18240 TATTTTTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
AAAATAATTATTAAATATTTTG
Found at i:18440 original size:2 final size:2
Alignment explanation
Indices: 18433--18464 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
18423 CAGAACCGGA
18433 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18465 GTTGCTCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18670 original size:26 final size:26
Alignment explanation
Indices: 18639--18757 Score: 86
Period size: 26 Copynumber: 4.6 Consensus size: 26
18629 AGTATTATTT
*
18639 TTATTATAATTATAACTATATAAATA
1 TTATTATAATTATAAATATATAAATA
* *
18665 TTATTATAA-T-TAATTATAAAAAATA
1 TTATTATAATTATAAATAT-ATAAATA
* *
18690 TTAATTATAAATATAAATA-ATAAAAA
1 TT-ATTATAATTATAAATATATAAATA
* *
18716 ATATTAAAATTATAAA-ATAATAATTATA
1 TTATTATAATTATAAATAT-ATAA--ATA
*
18744 ATATTAT-ATTATAA
1 TTATTATAATTATAA
18758 TTACTATTTA
Statistics
Matches: 75, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
24 7 0.09
25 21 0.28
26 26 0.35
27 8 0.11
28 13 0.17
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (26 bp):
TTATTATAATTATAAATATATAAATA
Found at i:18694 original size:16 final size:16
Alignment explanation
Indices: 18673--18737 Score: 64
Period size: 16 Copynumber: 4.1 Consensus size: 16
18663 TATTATTATA
18673 ATTAATTATAAAAAAT
1 ATTAATTATAAAAAAT
18689 ATTAATTAT---AAAT
1 ATTAATTATAAAAAAT
* *
18702 ATAAATAATAAAAAAT
1 ATTAATTATAAAAAAT
18718 ATTAAAATTATAAAATAAT
1 ATT--AATTATAAAA-AAT
18737 A
1 A
18738 ATTATAATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
13 11 0.28
16 15 0.38
18 9 0.23
19 4 0.10
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTAATTATAAAAAAT
Found at i:18697 original size:29 final size:31
Alignment explanation
Indices: 18664--18739 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 31
18654 CTATATAAAT
*
18664 ATTATTATAAT-T-AATTATAAAAAATATTA
1 ATTATTATAATATAAATAATAAAAAATATTA
18693 ATTA-TA-AATATAAATAATAAAAAATATTA
1 ATTATTATAATATAAATAATAAAAAATATTA
* *
18722 A-AATTATAAAAT-AATAAT
1 ATTATTATAATATAAATAAT
18740 TATAATATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
27 3 0.08
28 4 0.10
29 29 0.73
30 4 0.10
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (31 bp):
ATTATTATAATATAAATAATAAAAAATATTA
Found at i:18751 original size:22 final size:22
Alignment explanation
Indices: 18644--18751 Score: 64
Period size: 22 Copynumber: 4.8 Consensus size: 22
18634 TATTTTTATT
18644 ATAATTATAACTA-TAT-AAAT-
1 ATAATTATAA-TATTATAAAATA
*
18664 ATTATTATAATTAATTATAAAAAATA
1 ATAATTATAA-T-ATTAT--AAAATA
*
18690 TTAATTATAA-A-TATAAATAATA
1 ATAATTATAATATTAT-AA-AATA
* * *
18712 AAAAATATTAAAATTATAAAATA
1 ATAATTA-TAATATTATAAAATA
18735 ATAATTATAATATTATA
1 ATAATTATAATATTATA
18752 TTATAATTAC
Statistics
Matches: 68, Mismatches: 10, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
20 10 0.15
21 4 0.06
22 23 0.34
23 13 0.19
24 3 0.04
25 7 0.10
26 8 0.12
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (22 bp):
ATAATTATAATATTATAAAATA
Found at i:19950 original size:41 final size:41
Alignment explanation
Indices: 19905--19982 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
19895 AACATGATCT
*
19905 GCTATGGCATTGAACCATATAAGCTTTCTTAGCTTGTCTCA
1 GCTATGGCATTGAACCATATAAACTTTCTTAGCTTGTCTCA
*
19946 GCTATGGCATTGAACCATTTAAACTTTCTTAGCTTGT
1 GCTATGGCATTGAACCATATAAACTTTCTTAGCTTGT
19983 TGACTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (41 bp):
GCTATGGCATTGAACCATATAAACTTTCTTAGCTTGTCTCA
Found at i:20122 original size:41 final size:41
Alignment explanation
Indices: 20077--20154 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
20067 AACATGATCT
*
20077 GCTATGGCATTGAACCATATAAGCTTTCTTAGCTTGTCTCA
1 GCTATGGCATTGAACCATATAAACTTTCTTAGCTTGTCTCA
*
20118 GCTATGGCATTGAACCATTTAAACTTTCTTAGCTTGT
1 GCTATGGCATTGAACCATATAAACTTTCTTAGCTTGT
20155 TGACTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (41 bp):
GCTATGGCATTGAACCATATAAACTTTCTTAGCTTGTCTCA
Found at i:20137 original size:172 final size:172
Alignment explanation
Indices: 19851--20194 Score: 679
Period size: 172 Copynumber: 2.0 Consensus size: 172
19841 ACAAACAAAA
*
19851 ACAATTAGCATAAAACCAAATGAAAAATATTAAGAATATTTTCTAACATGATCTGCTATGGCATT
1 ACAATTAGAATAAAACCAAATGAAAAATATTAAGAATATTTTCTAACATGATCTGCTATGGCATT
19916 GAACCATATAAGCTTTCTTAGCTTGTCTCAGCTATGGCATTGAACCATTTAAACTTTCTTAGCTT
66 GAACCATATAAGCTTTCTTAGCTTGTCTCAGCTATGGCATTGAACCATTTAAACTTTCTTAGCTT
19981 GTTGACTTATTAGTTCCTTCAATTGTGCATTTTGATAATAAT
131 GTTGACTTATTAGTTCCTTCAATTGTGCATTTTGATAATAAT
20023 ACAATTAGAATAAAACCAAATGAAAAATATTAAGAATATTTTCTAACATGATCTGCTATGGCATT
1 ACAATTAGAATAAAACCAAATGAAAAATATTAAGAATATTTTCTAACATGATCTGCTATGGCATT
20088 GAACCATATAAGCTTTCTTAGCTTGTCTCAGCTATGGCATTGAACCATTTAAACTTTCTTAGCTT
66 GAACCATATAAGCTTTCTTAGCTTGTCTCAGCTATGGCATTGAACCATTTAAACTTTCTTAGCTT
20153 GTTGACTTATTAGTTCCTTCAATTGTGCATTTTGATAATAAT
131 GTTGACTTATTAGTTCCTTCAATTGTGCATTTTGATAATAAT
20195 TTCACTTGTA
Statistics
Matches: 171, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
172 171 1.00
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (172 bp):
ACAATTAGAATAAAACCAAATGAAAAATATTAAGAATATTTTCTAACATGATCTGCTATGGCATT
GAACCATATAAGCTTTCTTAGCTTGTCTCAGCTATGGCATTGAACCATTTAAACTTTCTTAGCTT
GTTGACTTATTAGTTCCTTCAATTGTGCATTTTGATAATAAT
Found at i:21584 original size:2 final size:2
Alignment explanation
Indices: 21577--21629 Score: 79
Period size: 2 Copynumber: 26.5 Consensus size: 2
21567 TCAACTTGTG
* * *
21577 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TC TA TA TA TA TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21619 TA TA TA TA TA T
1 TA TA TA TA TA T
21630 GAAGCTAAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:22868 original size:2 final size:2
Alignment explanation
Indices: 22861--22887 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22851 TAAATTCATC
22861 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
22888 TGAGAGTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25209 original size:16 final size:14
Alignment explanation
Indices: 25163--25213 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 14
25153 TTAAAATTAT
*
25163 TTATTATTT-ATTTT
1 TTATT-TTTAATTTA
25177 TTATTTTTTAATTTA
1 TTA-TTTTTAATTTA
25192 TTATTTTTAATATATA
1 TTATTTTTAAT-T-TA
25208 TTATTT
1 TTATTT
25214 ACAAATATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
14 14 0.44
15 10 0.31
16 8 0.25
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTATTTTTAATTTA
Found at i:25462 original size:15 final size:15
Alignment explanation
Indices: 25442--25488 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
25432 TAATAATTTA
* *
25442 TTTTTTATTTTATAT
1 TTTTTTATTTAAAAT
25457 TTTTTTATTTAAAAT
1 TTTTTTATTTAAAAT
*
25472 TTTTTAATTATAAAAT
1 TTTTTTATT-TAAAAT
25488 T
1 T
25489 ATCTTTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
15 21 0.75
16 7 0.25
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTTATTTAAAAT
Found at i:25495 original size:18 final size:16
Alignment explanation
Indices: 25455--25500 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 16
25445 TTTATTTTAT
*
25455 ATTTTTTTATT-TAAA
1 ATTTTTTAATTATAAA
25470 ATTTTTTAATTATAAA
1 ATTTTTTAATTATAAA
25486 ATTATCTTTAATTAT
1 ATT-T-TTTAATTAT
25501 TATTAAGTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 10 0.37
16 7 0.26
17 1 0.04
18 9 0.33
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTTTTAATTATAAA
Found at i:34005 original size:31 final size:33
Alignment explanation
Indices: 33959--34021 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 33
33949 AACAGTTTTT
33959 TTATTTTAAATTTAATAATATTAAG-ATAAATA
1 TTATTTTAAATTTAATAATATTAAGAATAAATA
* *
33991 TTATTTT-AATTTAATAGTATTATGAATAAAT
1 TTATTTTAAATTTAATAATATTAAGAATAAAT
34022 GATATTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 15 0.54
32 13 0.46
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (33 bp):
TTATTTTAAATTTAATAATATTAAGAATAAATA
Found at i:34847 original size:18 final size:18
Alignment explanation
Indices: 34824--34858 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
34814 GAATGAACTG
34824 TATATATTATATATAAAA
1 TATATATTATATATAAAA
34842 TATATATTATATATAAA
1 TATATATTATATATAAA
34859 TTAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TATATATTATATATAAAA
Found at i:35215 original size:2 final size:2
Alignment explanation
Indices: 35208--35317 Score: 134
Period size: 2 Copynumber: 55.0 Consensus size: 2
35198 AATTCCGTGT
* *
35208 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
35250 CT- TA TA TA TA TA TA CA TA TA CT- TA TA TA TA TA TA TA CA CA TA
1 -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
*
35292 TA CA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
35318 ACCAATGGGG
Statistics
Matches: 94, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
1 2 0.02
2 90 0.96
3 2 0.02
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:35747 original size:18 final size:19
Alignment explanation
Indices: 35711--35748 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
35701 ACGTAAAATT
**
35711 AATTAATTTTTTATGTTTA
1 AATTAATTTTTTAAATTTA
35730 AATTAA-TTTTTAAATTTA
1 AATTAATTTTTTAAATTTA
35748 A
1 A
35749 TAATATAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (19 bp):
AATTAATTTTTTAAATTTA
Found at i:39812 original size:13 final size:13
Alignment explanation
Indices: 39794--39819 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
39784 CAATTTTTTA
39794 TGTATCGATACAT
1 TGTATCGATACAT
39807 TGTATCGATACAT
1 TGTATCGATACAT
39820 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:39835 original size:32 final size:33
Alignment explanation
Indices: 39774--39837 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
39764 TACAAGCCAA
**
39774 TGTATCGATACAATTTTTTATGTATCGATACAT
1 TGTATCGATACAATACTTTATGTATCGATACAT
*
39807 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTATGTATCGATACA
39838 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTATGTATCGATACAT
Found at i:43082 original size:21 final size:21
Alignment explanation
Indices: 43058--43099 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
43048 ATCCATTTCT
* *
43058 TCATTTTCATCAACCTCTTGA
1 TCATCTTCATCAACATCTTGA
*
43079 TCATCTTCATCATCATCTTGA
1 TCATCTTCATCAACATCTTGA
43100 ACGATTGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (21 bp):
TCATCTTCATCAACATCTTGA
Found at i:44273 original size:13 final size:13
Alignment explanation
Indices: 44255--44280 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
44245 TACACAAAGT
44255 ATGTATCGATACA
1 ATGTATCGATACA
44268 ATGTATCGATACA
1 ATGTATCGATACA
44281 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:44278 original size:32 final size:33
Alignment explanation
Indices: 44237--44300 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
44227 TAGCCAAACT
**
44237 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
44269 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
44301 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:45277 original size:37 final size:37
Alignment explanation
Indices: 45236--45326 Score: 137
Period size: 37 Copynumber: 2.5 Consensus size: 37
45226 TGCTATAGGT
* * *
45236 TAAGAATAGTGGTTTTTGTTTCGACCCGTGCCACCAG
1 TAAGAATAGTGGTTTTTGTTTCAAACCGTGCCACCAA
*
45273 TAAGAATAGTGGTTTTTGTTTCAAACCGTGCCATCAA
1 TAAGAATAGTGGTTTTTGTTTCAAACCGTGCCACCAA
*
45310 TAAGAATAGTAGTTTTT
1 TAAGAATAGTGGTTTTT
45327 ATTCCGAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.36
Consensus pattern (37 bp):
TAAGAATAGTGGTTTTTGTTTCAAACCGTGCCACCAA
Found at i:47084 original size:26 final size:26
Alignment explanation
Indices: 47054--47110 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
47044 ATTTATTTAA
47054 AATCTCAAATAAAATTAAACTTTATC
1 AATCTCAAATAAAATTAAACTTTATC
* * * *
47080 AATCTTAGATAAAGTTAAATTTTATC
1 AATCTCAAATAAAATTAAACTTTATC
47106 AATCT
1 AATCT
47111 TATCTTTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.39
Consensus pattern (26 bp):
AATCTCAAATAAAATTAAACTTTATC
Found at i:47111 original size:26 final size:26
Alignment explanation
Indices: 47062--47112 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
47052 AAAATCTCAA
47062 ATAAAATTAAACTTTATCAATCTTAG
1 ATAAAATTAAACTTTATCAATCTTAG
* *
47088 ATAAAGTTAAATTTTATCAATCTTA
1 ATAAAATTAAACTTTATCAATCTTA
47113 TCTTTATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.45, C:0.10, G:0.04, T:0.41
Consensus pattern (26 bp):
ATAAAATTAAACTTTATCAATCTTAG
Found at i:47903 original size:19 final size:20
Alignment explanation
Indices: 47860--47912 Score: 90
Period size: 19 Copynumber: 2.7 Consensus size: 20
47850 AATTCAACGA
47860 TTTGTATCGATACATAAAGT
1 TTTGTATCGATACATAAAGT
*
47880 GTTGTATCGATACAT-AAGT
1 TTTGTATCGATACATAAAGT
47899 TTTGTATCGATACA
1 TTTGTATCGATACA
47913 ATTTAAGCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (20 bp):
TTTGTATCGATACATAAAGT
Found at i:47973 original size:13 final size:13
Alignment explanation
Indices: 47955--47979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47945 ATTACTCAAA
47955 TGTATCGATACAT
1 TGTATCGATACAT
47968 TGTATCGATACA
1 TGTATCGATACA
47980 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:48044 original size:52 final size:52
Alignment explanation
Indices: 47988--48116 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
47978 CACTGATCTT
*
47988 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTA-TAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTAGT-AAA
48040 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTAGTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTAGTAAA
*
48092 TGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACATGCAGGCAAATTT
48117 TCATATTTCG
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
52 73 0.99
53 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTAGTAAA
Found at i:48999 original size:20 final size:21
Alignment explanation
Indices: 48947--48999 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
48937 CATCACGTTA
*
48947 ACAGCCCATGATTCATGCATTT
1 ACAG-CCATGTTTCATGCATTT
**
48969 TGAGCCATGTTTCATGCATTT
1 ACAGCCATGTTTCATGCATTT
48990 ACAG-CATGTT
1 ACAGCCATGTT
49000 CAGCACCTCC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 6 0.23
21 18 0.69
22 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.36
Consensus pattern (21 bp):
ACAGCCATGTTTCATGCATTT
Found at i:61353 original size:79 final size:80
Alignment explanation
Indices: 61248--61447 Score: 278
Period size: 79 Copynumber: 2.5 Consensus size: 80
61238 ATAATAACAG
* * * *
61248 GGTTGGAGTGTTCCCTTGAAAATAACGGGGCTGGAGTATCCCCAATTATGAGAAATCAATATTTT
1 GGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTT
* *
61313 GGGAATAAAGCC-GA
66 AGAAATAAAGCCGGA
* * * *
61327 GGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTT
1 GGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTT
*
61392 AGAAATAAAGCCGGG
66 AGAAATAAAGCCGGA
*
61407 GGTTGGAGTATCCTCTCGAAAATAAC-GGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCC
61448 TAATGATTAA
Statistics
Matches: 106, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
79 82 0.77
80 24 0.23
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (80 bp):
GGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTT
AGAAATAAAGCCGGA
Found at i:61463 original size:27 final size:26
Alignment explanation
Indices: 61429--61480 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
61419 CTCTCGAAAA
61429 TAACGGGTTGGAGTATCCCTAATGAT
1 TAACGGGTTGGAGTATCCCTAATGAT
*
61455 TAACGGGGTTGGAGTATCCCTGATGA
1 TAAC-GGGTTGGAGTATCCCTAATGA
61481 AAAATTGATG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (26 bp):
TAACGGGTTGGAGTATCCCTAATGAT
Found at i:61561 original size:51 final size:47
Alignment explanation
Indices: 61462--61577 Score: 126
Period size: 51 Copynumber: 2.4 Consensus size: 47
61452 GATTAACGGG
* * *
61462 GTTGGAGTATCCCTGATGAAAAATTGATGTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCTGATTAAAAAATCATGTTTAGAAATAAAATCGGA
* *
61509 GTTGGAGTATCCCTGATTATAGAAAATCAGTGTTTTGAAAATGAAATCGGA
1 GTTGGAGTATCCCTGATTA-A-AAAATCA-TGTTTAG-AAATAAAATCGGA
*
61560 GTTGG-GATATCCCCGATT
1 GTTGGAG-TATCCCTGATT
61578 GCGGAGAATT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
47 18 0.31
48 1 0.02
49 5 0.09
50 7 0.12
51 27 0.47
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (47 bp):
GTTGGAGTATCCCTGATTAAAAAATCATGTTTAGAAATAAAATCGGA
Found at i:63964 original size:13 final size:13
Alignment explanation
Indices: 63946--63971 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63936 ACAAAGATCC
63946 ATGTATCGATACA
1 ATGTATCGATACA
63959 ATGTATCGATACA
1 ATGTATCGATACA
63972 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:63967 original size:33 final size:33
Alignment explanation
Indices: 63925--63991 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
63915 AAAATTTCCA
***
63925 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
63958 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
63991 A
1 A
63992 TTTCTTGGCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:64034 original size:19 final size:18
Alignment explanation
Indices: 64010--64077 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
64000 CAGTAGCTAA
64010 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
64029 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
*
64044 -T-TGCATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
64061 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
64078 TTGTTGAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
13 10 0.24
14 1 0.02
16 2 0.05
18 4 0.10
19 24 0.59
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:65986 original size:1 final size:1
Alignment explanation
Indices: 65980--66042 Score: 63
Period size: 1 Copynumber: 63.0 Consensus size: 1
65970 CGTCCTCCAC
* * * * * * *
65980 AAAAAAAAAAAAACAAAACAAAAAAAACAAAAAAAAACAAAAAACAAAAAACAAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
66043 CAAACAACAA
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:65997 original size:14 final size:14
Alignment explanation
Indices: 65978--66058 Score: 90
Period size: 15 Copynumber: 5.5 Consensus size: 14
65968 GGCGTCCTCC
65978 ACAAAAAAAAAAAA
1 ACAAAAAAAAAAAA
65992 ACAAAACAAAAAAAA
1 ACAAAA-AAAAAAAA
*
66007 CAAAAAAAAACAAAAA
1 -ACAAAAAAA-AAAAA
*
66023 ACAAAAAACAAAAA
1 ACAAAAAAAAAAAA
* *
66037 ACAAAACAAACAACA
1 ACAAAA-AAAAAAAA
66052 ACAAAAA
1 ACAAAAA
66059 GGGTCCGGAT
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
14 18 0.32
15 29 0.51
16 10 0.18
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (14 bp):
ACAAAAAAAAAAAA
Found at i:66000 original size:19 final size:19
Alignment explanation
Indices: 65978--66057 Score: 92
Period size: 19 Copynumber: 4.1 Consensus size: 19
65968 GGCGTCCTCC
65978 ACAAAAAAAAAAAAACAAA
1 ACAAAAAAAAAAAAACAAA
65997 ACAAAAAAAACAAAAA-AAA
1 ACAAAAAAAA-AAAAACAAA
*
66016 ACAAAAAACAAAAAACAAA
1 ACAAAAAAAAAAAAACAAA
66035 A-AACAAAACAAACAACAACAAA
1 ACAA-AAAA-AAA-AA-AACAAA
66057 A
1 A
66058 AGGGTCCGGA
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
18 7 0.13
19 30 0.57
20 7 0.13
21 2 0.04
22 7 0.13
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (19 bp):
ACAAAAAAAAAAAAACAAA
Found at i:66023 original size:26 final size:25
Alignment explanation
Indices: 65980--66058 Score: 99
Period size: 26 Copynumber: 3.2 Consensus size: 25
65970 CGTCCTCCAC
65980 AAAAAAAAAAAAAC--AAAACAAAA
1 AAAAAAAAAAAAACAAAAAACAAAA
66003 AAAACAAAAAAAAACAAAAAACAAAA
1 AAAA-AAAAAAAAACAAAAAACAAAA
* * *
66029 AACAAAAAACAAAACAAACAACAACA
1 AA-AAAAAAAAAAACAAAAAACAAAA
66055 AAAA
1 AAAA
66059 GGGTCCGGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
23 4 0.08
24 10 0.20
25 2 0.04
26 31 0.63
27 2 0.04
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (25 bp):
AAAAAAAAAAAAACAAAAAACAAAA
Found at i:66052 original size:7 final size:7
Alignment explanation
Indices: 65978--66042 Score: 84
Period size: 7 Copynumber: 9.9 Consensus size: 7
65968 GGCGTCCTCC
65978 ACAAAAA
1 ACAAAAA
65985 A-AAAAA
1 ACAAAAA
*
65991 A-ACAAA
1 ACAAAAA
65997 ACAAAAA
1 ACAAAAA
*
66004 A-AACAA
1 ACAAAAA
66010 A-AAAAA
1 ACAAAAA
66016 ACAAAAA
1 ACAAAAA
66023 ACAAAAA
1 ACAAAAA
66030 ACAAAAA
1 ACAAAAA
66037 ACAAAA
1 ACAAAA
66043 CAAACAACAA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
6 21 0.40
7 31 0.60
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
ACAAAAA
Found at i:67524 original size:29 final size:29
Alignment explanation
Indices: 67485--68063 Score: 392
Period size: 29 Copynumber: 19.5 Consensus size: 29
67475 TCACCCTTCA
67485 AAAGCCCACAAGTCAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* *
67514 AAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTT-C
* * * * *
67545 TTTTAAGCCCACAAGTTAATGGCACCCTTTTC
1 ---AAAGCCCACAAGTCAGTGGCATCTTTTTC
* *
67577 AAAAGCCCACAAGTCAGTGGCAAC-CTTTC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTC
*
67606 AAAGCCCACAAGTTAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
67635 AAAGCCCACAACTCCGTGGCACCCTTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTT-C
* * * * *
67666 TTTTAAGCCCAGAAGTTAGTGGCACCCTTTTC
1 ---AAAGCCCACAAGTCAGTGGCATCTTTTTC
* *
67698 AAAAG-CC-CAAGTCAGTGGCAAC-CTTTC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTC
67725 AAAGCCCACAAGTCAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * * *
67754 AAAGTCCACAAATCAGTGGCAAC--CTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* *
67781 -AAGCCCACAAATCAGTGGCACCCTTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTT-C
* * * *
67811 GAAGCCCACAAGTCGGTGGCATATTTTCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
67840 AAAGTCCACAACTCCGTGGCACTCTTTTTC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTTC
* *
67870 TTTTATAAGCCCACAACTCCGTGGCA-CTATTTTCC
1 ----A-AAGCCCACAAGTCAGTGGCATCT-TTTT-C
* * *
67905 TTTTAAGCCCACAAGTTAGTGGCA-CCTTTTC
1 ---AAAGCCCACAAGTCAGTGGCATCTTTTTC
* *
67936 AAAAGCCCACAAGTCAGTGGCAAC-CTTTC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTC
*
67965 AAAGCCCATAAGTCAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
67994 AAAGTCCACAA-TCAGTGGCAAC--CTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
68020 AAAGCCCACAAATCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTTC
*
68050 GAAGCCCACAAGTC
1 AAAGCCCACAAGTC
68064 GGTCGGTGGC
Statistics
Matches: 440, Mismatches: 77, Indels: 65
0.76 0.13 0.11
Matches are distributed among these distances:
26 36 0.08
27 19 0.04
28 79 0.18
29 127 0.29
30 61 0.14
31 21 0.05
32 6 0.01
33 31 0.07
34 40 0.09
35 20 0.05
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTTC
Found at i:67695 original size:91 final size:89
Alignment explanation
Indices: 67579--67753 Score: 219
Period size: 91 Copynumber: 1.9 Consensus size: 89
67569 CCCTTTTCAA
* * *
67579 AAGCCCACAAGTCAGTGGCAACC-TTTC-AAAGCCCACAAGTTAGTGGCATCTTTTTCAAAGCCC
1 AAGCCCACAAGTCAGTGGCAACCTTTTCAAAAG-CC-CAAGTCAGTGGCAAC-CTTTCAAAGCCC
*
67642 ACAACTCCGTGGCACCCTTTTTCCTTTT
63 ACAACTCAGTGGCA-CCTTTTTCCTTTT
* * *
67670 AAGCCCAGAAGTTAGTGGCACCCTTTTCAAAAGCCCAAGTCAGTGGCAACCTTTCAAAGCCCACA
1 AAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCCCAAGTCAGTGGCAACCTTTCAAAGCCCACA
* *
67735 AGTCAGTGGCATCTTTTTC
66 ACTCAGTGGCACCTTTTTC
67754 AAAGTCCACA
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
89 7 0.10
90 23 0.32
91 33 0.45
92 6 0.08
93 4 0.05
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (89 bp):
AAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCCCAAGTCAGTGGCAACCTTTCAAAGCCCACA
ACTCAGTGGCACCTTTTTCCTTTT
Found at i:67699 original size:121 final size:121
Alignment explanation
Indices: 67485--68018 Score: 686
Period size: 121 Copynumber: 4.5 Consensus size: 121
67475 TCACCCTTCA
67485 AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAACTCCGTGGC-ACTCTTTTTCCTTTT
1 AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAACTCCGTGGCAAC-CTTTTTCCTTTT
*
67549 AAGCCCACAAGTTAATGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTC
65 AAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTC
* *
67606 AAAGCCCACAAGTTAGTGGCATCTTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTTCCTTTTA
1 AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAACTCCGTGGCAACCTTTTTCCTTTTA
*
67671 AGCCCAGAAGTTAGTGGCACCCTTTTCAAAAG-CC-CAAGTCAGTGGCAACCTTTC
66 AGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTC
* * *
67725 AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGTCCACAAATCAGTGGCAACC---TT-C----A
1 AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAACTCCGTGGCAACCTTTTTCCTTTTA
* * ** * *
67782 AGCCCACAAATCAGTGGCACCCTTTTTCCGAAGCCCACAAGTCGGTGGCATA-TTTTCC
66 AGCCCACAAGTTAGTGGCACCC-TTTTCAAAAGCCCACAAGTCAGTGGCA-ACCTTT-C
* * *
67840 AAAGTCCACAACTCCGTGGCACTCTTTTTCTTTTATAAGCCCACAACTCCGTGGC-A-CTATTTT
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTTC----A-AAGCCCACAACTCCGTGGCAACCT-TTTT
67903 CCTTTTAAGCCCACAAGTTAGTGGCA-CCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTC
59 CCTTTTAAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTC
* * *
67965 AAAGCCCATAAGTCAGTGGCATCTTTTTCAAAGTCCACAA-TCAGTGGCAACCTT
1 AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAACTCCGTGGCAACCTT
68019 CAAAGCCCAC
Statistics
Matches: 355, Mismatches: 34, Indels: 50
0.81 0.08 0.11
Matches are distributed among these distances:
111 20 0.06
112 8 0.02
113 2 0.01
114 15 0.04
115 21 0.06
116 10 0.03
118 7 0.02
119 80 0.23
120 7 0.02
121 107 0.30
122 1 0.00
123 2 0.01
124 9 0.03
125 19 0.05
126 27 0.08
127 2 0.01
128 18 0.05
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (121 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAACTCCGTGGCAACCTTTTTCCTTTTA
AGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTC
Found at i:67882 original size:240 final size:239
Alignment explanation
Indices: 67485--68116 Score: 858
Period size: 240 Copynumber: 2.6 Consensus size: 239
67475 TCACCCTTCA
* * *
67485 AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAACTCCGTGGC-ACTCTTTTTCCTTTT
1 AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGTCCACAAATCAGTGGCAAC-C---TT-C---T
* * * ** * * *
67549 AAGCCCACAAGTTAATGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCA-ACCTTT-CAAAGCC
58 AAGCCCACAAATCAGTGGCACCCTTTTCCGAAGCCCACAAGTCGGTGGCATA-TTTTCCAAAGTC
* **
67612 CACAAGTTAGTGGCA-TCTTTTTC----AAAGCCCACAACTCCGTGGCACCCT-TTTTCCTTTTA
122 CACAACTCCGTGGCACTCTTTTTCTTTTAAAGCCCACAACTCCGTGGCA--CTATTTTCCTTTTA
*
67671 AGCCCAGAAGTTAGTGGCACCCTTTTCAAAAG-CC-CAAGTCAGTGGCAACCTTTC
185 AGCCCACAAGTTAGTGGCA-CCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTC
67725 AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGTCCACAAATCAGTGGCAACCTTC-AAGCCCAC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGTCCACAAATCAGTGGCAACCTTCTAAGCCCAC
67789 AAATCAGTGGCACCCTTTTTCCGAAGCCCACAAGTCGGTGGCATATTTTCCAAAGTCCACAACTC
66 AAATCAGTGGCACCC-TTTTCCGAAGCCCACAAGTCGGTGGCATATTTTCCAAAGTCCACAACTC
67854 CGTGGCACTCTTTTTCTTTTATAAGCCCACAACTCCGTGGCACTATTTTCCTTTTAAGCCCACAA
130 CGTGGCACTCTTTTTCTTTTA-AAGCCCACAACTCCGTGGCACTATTTTCCTTTTAAGCCCACAA
67919 GTTAGTGGCACCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTC
194 GTTAGTGGCACCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTC
* *
67965 AAAGCCCATAAGTCAGTGGCATCTTTTTCAAAGTCCAC-AATCAGTGGCAACCTTCAAAGCCCAC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGTCCACAAATCAGTGGCAACCTTCTAAGCCCAC
68029 AAATCAGTGGCACCCTTTTCCGAAGCCCACAAGTCGGTCGGTGGCATATTTTCCAAAGTCCACAA
66 AAATCAGTGGCACCCTTTTCCGAAGCCCACAA----GTCGGTGGCATATTTTCCAAAGTCCACAA
68094 CTCCGTGGCACTCTTTTTCTTTT
127 CTCCGTGGCACTCTTTTTCTTTT
68117 GT
Statistics
Matches: 358, Mismatches: 16, Indels: 33
0.88 0.04 0.08
Matches are distributed among these distances:
232 20 0.06
233 27 0.08
234 19 0.05
235 8 0.02
236 1 0.00
237 2 0.01
238 14 0.04
239 66 0.18
240 147 0.41
241 2 0.01
243 52 0.15
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (239 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGTCCACAAATCAGTGGCAACCTTCTAAGCCCAC
AAATCAGTGGCACCCTTTTCCGAAGCCCACAAGTCGGTGGCATATTTTCCAAAGTCCACAACTCC
GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTATTTTCCTTTTAAGCCCACAAGT
TAGTGGCACCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTC
Found at i:67917 original size:33 final size:35
Alignment explanation
Indices: 67845--67918 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
67835 TTTCCAAAGT
* *
67845 CCACAACTCCGTGGCACTCTTTTTCTTTTATAAGC
1 CCACAACTCCGTGGCACTCATTTTCCTTTATAAGC
67880 CCACAACTCCGTGGCACT-ATTTTCCTTT-TAAGC
1 CCACAACTCCGTGGCACTCATTTTCCTTTATAAGC
67913 CCACAA
1 CCACAA
67919 GTTAGTGGCA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
33 11 0.30
34 8 0.22
35 18 0.49
ACGTcount: A:0.23, C:0.34, G:0.11, T:0.32
Consensus pattern (35 bp):
CCACAACTCCGTGGCACTCATTTTCCTTTATAAGC
Found at i:67927 original size:33 final size:35
Alignment explanation
Indices: 67845--67929 Score: 102
Period size: 33 Copynumber: 2.5 Consensus size: 35
67835 TTTCCAAAGT
* * *
67845 CCACAACTCCGTGGCACTCTTTTTCTTTTATAAGC
1 CCACAACTCAGTGGCACTCATTTTCCTTTATAAGC
*
67880 CCACAACTCCGTGGCACT-ATTTTCCTTT-TAAGC
1 CCACAACTCAGTGGCACTCATTTTCCTTTATAAGC
* *
67913 CCACAAGTTAGTGGCAC
1 CCACAACTCAGTGGCAC
67930 CTTTTCAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
33 19 0.42
34 8 0.18
35 18 0.40
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (35 bp):
CCACAACTCAGTGGCACTCATTTTCCTTTATAAGC
Done.