genome.fa.s712.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold712
Parameters: 2 7 7 80 10 50 1000
Length:  72607

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1706--1760	11	4.9	11	77	4	56	0	9	9	81	0.87
14180--14261	28	2.9	28	80	7	96	26	17	31	24	1.97
14244--14414	51	3.3	51	78	4	189	32	11	26	29	1.91
14397--14472	27	2.8	28	88	6	102	21	21	34	23	1.97
16937--16962	13	2.0	13	100	0	52	38	15	15	30	1.88
16916--16982	33	2.0	33	88	0	98	43	16	14	25	1.86
17002--17069	19	3.9	18	76	23	83	38	14	11	35	1.83
17024--17048	13	1.9	13	100	0	50	32	16	16	36	1.90
17005--17067	32	2.0	32	96	0	117	36	15	12	34	1.86
17105--17181	21	3.7	21	89	3	111	35	16	12	35	1.88
17304--17337	16	2.1	16	100	0	68	20	32	17	29	1.96
17534--17603	10	6.8	10	80	19	74	87	8	2	1	0.71
17546--17603	27	2.2	26	87	6	89	89	6	1	1	0.61
17552--17612	17	3.3	19	80	15	74	85	9	3	1	0.78
17535--17603	1	69.0	1	77	0	66	88	7	2	1	0.67
17546--17603	9	6.6	9	84	9	75	89	6	1	1	0.61
19048--19206	57	2.8	57	85	5	187	33	28	17	20	1.95
19048--19187	28	4.9	29	78	14	137	32	29	17	20	1.96
19216--19767	49	11.1	49	82	6	650	25	26	17	30	1.97
19261--19767	151	3.4	149	87	4	664	24	27	17	30	1.98
19216--19767	249	2.2	248	90	4	880	25	26	17	30	1.97
20610--20707	19	5.8	19	68	26	85	35	12	16	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20611--20705	32	3.0	32	95	0	172	35	12	16	34	1.87
20630--20686	13	3.9	13	72	24	51	36	14	15	33	1.88
24552--24704	78	1.9	79	85	3	211	37	14	20	27	1.92
24822--25210	78	4.9	78	80	5	381	35	13	22	27	1.92
24822--25210	157	2.5	157	83	2	460	35	13	22	27	1.92
28754--28822	32	2.2	32	86	5	95	36	27	11	24	1.90
29065--29246	52	3.5	52	83	6	199	24	24	14	36	1.93
29123--29409	52	5.4	52	75	8	193	25	24	13	35	1.93
30048--30098	20	2.5	21	81	9	61	37	9	19	33	1.85
30141--30259	51	2.3	52	91	2	188	28	15	13	42	1.84
30214--30293	32	2.5	32	91	4	126	23	17	18	40	1.91
32648--32846	96	2.1	97	84	4	260	28	21	14	36	1.92
33297--33337	21	2.0	21	85	9	57	39	12	9	39	1.76
33377--33447	20	3.6	19	77	7	70	40	16	12	29	1.86
33524--33554	10	3.1	10	90	0	53	22	29	6	41	1.78
33542--33662	22	5.6	22	96	3	228	27	23	11	37	1.90
33542--33662	43	2.8	44	97	2	228	27	23	11	37	1.90
33745--33770	13	2.0	13	100	0	52	30	15	23	30	1.95
34249--34315	37	1.9	35	88	11	102	32	11	25	29	1.92
42384--42409	12	2.2	12	100	0	52	34	7	26	30	1.85
43512--43536	13	1.9	13	100	0	50	32	16	16	36	1.90
44474--44515	21	2.0	21	81	9	50	30	7	23	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46213--46277	31	2.1	31	88	5	96	33	13	26	26	1.94
46134--46496	110	3.3	108	85	3	476	33	12	24	29	1.92
46432--46515	31	2.7	31	96	0	159	30	11	28	28	1.92
48808--48859	20	2.6	20	84	0	68	44	11	15	28	1.81
48899--48954	21	2.7	21	97	0	103	30	14	21	33	1.93
52254--52311	17	3.4	17	83	9	73	39	6	20	32	1.79
61604--61640	13	2.8	14	88	8	51	29	13	21	35	1.92
67814--67838	13	1.9	13	100	0	50	36	16	16	32	1.90
68960--68985	13	2.0	13	100	0	52	38	15	15	30	1.88
69037--69105	19	3.6	19	100	0	138	36	20	11	31	1.88
69293--69328	18	2.0	18	100	0	72	61	11	5	22	1.50
72238--72293	21	2.7	21	91	0	85	28	23	12	35	1.91

Tables:   1

The End!