genome.fa.s714.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold714
Parameters: 2 7 7 80 10 50 1000
Length:  120697

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425--454	11	2.6	11	94	5	51	0	16	0	83	0.65
1262--1294	3	11.0	3	100	0	66	33	0	0	66	0.92
2738--2773	12	3.3	11	88	11	56	75	5	0	19	1.00
3326--3354	14	2.0	15	93	6	51	24	6	13	55	1.63
5776--5801	13	2.0	13	100	0	52	30	15	15	38	1.88
5788--5840	19	2.7	21	82	14	76	37	15	16	30	1.90
5786--5843	20	3.0	19	85	10	82	37	15	17	29	1.90
12088--12114	13	2.1	13	100	0	54	29	14	14	40	1.86
14106--14139	14	2.4	14	95	0	59	32	20	14	32	1.93
14649--14740	13	7.2	13	70	26	72	31	14	18	35	1.90
14656--14740	33	2.7	31	83	8	111	32	14	18	34	1.91
17108--17156	23	2.2	22	82	10	55	40	16	16	26	1.89
18773--18798	13	2.0	13	100	0	52	30	15	15	38	1.88
18753--18816	33	2.0	32	90	3	101	26	14	20	39	1.90
18858--18910	20	2.6	21	82	8	65	30	16	15	37	1.90
18898--18922	13	1.9	13	100	0	50	36	16	16	32	1.90
21379--21416	13	2.9	13	96	0	67	31	18	15	34	1.92
21599--21624	8	3.2	8	100	0	52	61	23	0	15	1.33
27767--27895	52	2.5	52	94	0	231	27	19	17	36	1.94
27966--28055	13	6.0	13	71	26	63	34	16	14	34	1.89
27980--28077	19	5.8	18	71	28	90	36	16	12	34	1.86
27967--28075	32	3.4	32	94	1	182	34	16	13	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31253--31278	13	2.0	13	100	0	52	30	15	15	38	1.88
31233--31296	33	2.0	32	90	3	101	26	14	20	39	1.90
32319--32368	25	2.0	25	92	0	82	36	8	12	44	1.71
36765--36819	26	2.1	26	89	0	83	36	7	12	43	1.71
39204--39278	32	2.3	32	82	8	91	60	0	0	40	0.97
39200--39285	8	10.4	8	69	19	52	59	0	0	40	0.97
39213--39280	18	3.9	18	69	21	54	58	0	0	41	0.98
39920--40012	22	4.3	22	66	10	57	48	6	9	35	1.62
40066--40114	22	2.3	21	85	3	62	57	2	4	36	1.30
39914--40255	146	2.3	145	81	4	364	44	7	10	37	1.67
40228--40283	22	2.5	22	74	5	60	60	0	5	33	1.19
40954--41014	26	2.4	28	84	13	78	45	0	0	54	1.00
40958--41005	18	2.7	19	81	12	59	47	0	0	52	1.00
41943--41996	24	2.2	25	90	3	83	72	7	0	20	1.08
45268--45294	14	1.9	14	100	0	54	33	0	0	66	0.92
50205--50279	20	3.8	20	80	0	96	33	13	12	41	1.81
50205--50282	40	2.0	39	89	2	120	33	12	12	41	1.82
63489--63577	13	5.9	13	72	27	70	34	13	17	33	1.89
63469--63598	32	4.0	32	97	1	242	34	12	17	35	1.87
63467--63596	19	7.8	18	70	29	110	33	12	17	36	1.87
63489--63633	64	2.3	64	84	7	179	35	13	17	33	1.89
67417--67486	19	3.5	19	75	11	68	85	10	1	2	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67416--67495	33	2.5	32	82	7	92	83	11	2	2	0.83
67416--67484	9	8.0	9	74	19	67	85	11	1	1	0.73
67417--67473	1	57.0	1	78	0	60	89	8	0	1	0.55
68709--69922	28	42.6	28	85	4	1403	28	31	18	22	1.97
68711--69922	199	6.1	196	85	6	1458	28	31	18	22	1.97
70529--70603	20	3.8	20	78	0	87	33	12	12	42	1.79
70529--70606	40	2.0	39	87	2	111	33	11	12	42	1.79
76724--76761	2	19.0	2	100	0	76	50	0	0	50	1.00
77370--77402	3	11.0	3	100	0	66	33	0	0	66	0.92
77785--77815	2	15.5	2	100	0	62	48	0	0	51	1.00
78154--78181	3	9.3	3	100	0	56	32	0	0	67	0.91
78673--78713	21	2.0	20	86	13	57	39	0	0	60	0.96
83647--83768	63	2.0	62	80	11	142	44	0	0	55	0.99
94879--94990	55	2.0	55	100	0	224	32	16	18	33	1.93
96848--96918	37	1.9	37	83	13	94	36	1	0	61	1.05
96878--96926	24	2.0	24	84	7	64	40	4	0	55	1.19
97284--97354	32	2.2	33	84	2	90	52	2	2	42	1.31
110751--110776	13	2.0	13	100	0	52	30	15	15	38	1.88
110731--110794	33	2.0	32	87	9	94	28	14	18	39	1.90
110864--110888	13	1.9	13	100	0	50	36	16	16	32	1.90
112868--112912	20	2.1	22	80	12	58	11	28	40	20	1.86

Tables:   1

The End!