Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold718
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16960
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Found at i:2124 original size:13 final size:13
Alignment explanation
Indices: 2106--2131 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2096 ACAAAGATCC
2106 ATGTATCGATACA
1 ATGTATCGATACA
2119 ATGTATCGATACA
1 ATGTATCGATACA
2132 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2127 original size:33 final size:33
Alignment explanation
Indices: 2085--2151 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2075 AAAATTTCCA
***
2085 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
2118 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
2151 A
1 A
2152 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:2195 original size:19 final size:18
Alignment explanation
Indices: 2171--2239 Score: 67
Period size: 19 Copynumber: 3.9 Consensus size: 18
2161 CAGTAGCTAA
2171 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
2190 TTATGTATCGATAC---C
1 TTATGTATCGATACAAAC
2205 -T-TGTATCGATACCAAAAC
1 TTATGTATCGATA-C-AAAC
*
2223 TTATGTAGCGATACAAA
1 TTATGTATCGATACAAA
2240 TTGTTGAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 15
0.72 0.02 0.26
Matches are distributed among these distances:
13 10 0.24
14 2 0.05
15 1 0.02
18 4 0.10
19 16 0.38
20 9 0.21
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:2211 original size:13 final size:13
Alignment explanation
Indices: 2193--2217 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2183 ACAATACTTA
2193 TGTATCGATACCT
1 TGTATCGATACCT
2206 TGTATCGATACC
1 TGTATCGATACC
2218 AAAACTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACCT
Found at i:2235 original size:33 final size:32
Alignment explanation
Indices: 2174--2236 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
2164 TAGCTAATTA
* *
2174 TGTATCGATACAATACTTATGTATCGATACCT
1 TGTATCGATACAAAACTTATGTAGCGATACCT
2206 TGTATCGATACCAAAACTTATGTAGCGATAC
1 TGTATCGATA-CAAAACTTATGTAGCGATAC
2237 AAATTGTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 10 0.36
33 18 0.64
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTAGCGATACCT
Found at i:2319 original size:21 final size:21
Alignment explanation
Indices: 2295--2351 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
2285 CATTTGTAGG
2295 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
2316 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
2337 ATGTATCGATACATT
1 ATGTATCGATACATT
2352 TGGATAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:3269 original size:55 final size:55
Alignment explanation
Indices: 3174--3444 Score: 375
Period size: 55 Copynumber: 4.9 Consensus size: 55
3164 ATAAAGTGTA
* * * * * *
3174 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
3229 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
3284 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
3339 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCATTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
3394 TCCTGCTCTTTGGGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
3445 AGAAAAAGCA
Statistics
Matches: 194, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
54 6 0.03
55 182 0.94
56 6 0.03
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:3361 original size:26 final size:26
Alignment explanation
Indices: 3332--3419 Score: 88
Period size: 26 Copynumber: 3.3 Consensus size: 26
3322 GTGGGCTTTA
3332 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** * *
3358 AAAGGTG-CCACCAACTTGTGTGGGCATTG
1 AAAGGTGTCCTGC-TCTT-TG-GGG-ACTG
*
3387 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
3413 AAAGGTG
1 AAAGGTG
3420 CCACTAACTT
Statistics
Matches: 47, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
25 3 0.06
26 19 0.40
27 5 0.11
28 5 0.11
29 12 0.26
30 3 0.06
ACGTcount: A:0.20, C:0.18, G:0.35, T:0.26
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:3367 original size:110 final size:109
Alignment explanation
Indices: 3174--3487 Score: 371
Period size: 110 Copynumber: 2.8 Consensus size: 109
3164 ATAAAGTGTA
* * * * *
3174 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTT
1 TCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTT
* *
3239 TGAGGACTGAAAGGTGCCACCAACGTGTGTGGGC-TTTAAGAGGTG
65 TGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCATTGAA-AGGGG
* *
3284 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTT
* *
3349 TGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCATTGAAAGGGG
65 TGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCATTGAAAGGGG
* * * *
3394 TCCTGCTCTTTGGGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCT
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAAG-----GCGTCCT
* *
3459 CCTCTTTGAGGACT-AAAGGGGCCACCAAC
59 ACTCTTTGAGGACTGAAAGGTGCCACCAAC
3488 TTCGTCCCCA
Statistics
Matches: 176, Mismatches: 19, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
109 4 0.02
110 128 0.73
111 13 0.07
115 14 0.08
116 17 0.10
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (109 bp):
TCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTTT
GAGGACTGAAAGGTGCCACCAACGTGTGTGGGCATTGAAAGGGG
Found at i:4206 original size:55 final size:55
Alignment explanation
Indices: 4111--4425 Score: 375
Period size: 55 Copynumber: 5.7 Consensus size: 55
4101 ATAAAGTGTA
* * * * *
4111 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
4166 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTAT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * * *
4221 TCCTGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
4276 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAATTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
4331 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAATGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TT---TG-AAAGGCG
4391 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
4426 CGTCCCCACA
Statistics
Matches: 226, Mismatches: 25, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
54 6 0.03
55 172 0.76
56 8 0.04
59 19 0.08
60 21 0.09
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:4298 original size:26 final size:26
Alignment explanation
Indices: 4269--4356 Score: 79
Period size: 26 Copynumber: 3.3 Consensus size: 26
4259 GTGGGCTTTA
4269 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** ** *
4295 AAAGGTG-CCACCAATTTGTGTGGGCTTTG
1 AAAGGTGTCCTGCTCTTTG-G-GGAC--TG
*
4324 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
4350 AAAGGTG
1 AAAGGTG
4357 CCACCAACTT
Statistics
Matches: 45, Mismatches: 12, Indels: 10
0.67 0.18 0.15
Matches are distributed among these distances:
25 7 0.16
26 16 0.36
27 3 0.07
28 3 0.07
29 9 0.20
30 7 0.16
ACGTcount: A:0.19, C:0.17, G:0.35, T:0.28
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:4325 original size:29 final size:29
Alignment explanation
Indices: 4293--4380 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 29
4283 CTTTGGGGAC
4293 TGAAAGGTGCCACCAATTTGTGTGGGCTT
1 TGAAAGGTGCCACCAATTTGTGTGGGCTT
* ** ** *
4322 TGAAAGGGGTCCTGCTCTTTG-G-GGAC--
1 TGAAAGGTG-CCACCAATTTGTGTGGGCTT
*
4348 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAATTTGTGTGGGCTT
4377 TGAA
1 TGAA
4381 TGAAAAAGCA
Statistics
Matches: 41, Mismatches: 13, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
25 6 0.15
26 9 0.22
27 3 0.07
28 3 0.07
29 13 0.32
30 7 0.17
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.28
Consensus pattern (29 bp):
TGAAAGGTGCCACCAATTTGTGTGGGCTT
Found at i:5160 original size:55 final size:54
Alignment explanation
Indices: 5047--5360 Score: 373
Period size: 55 Copynumber: 5.6 Consensus size: 54
5037 ATAAAGTGTA
* * * * *
5047 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACT-GTGTGGGCTTTGAAAGGTG
* * *
5102 TCCTACTCTTTGAAGAGTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC-TGTGTGGGCTTTGAA-AGGTG
* *
5157 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAAC-TGTGTGGGCTTTGAAAGGTG
*
5212 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC-TGTGTGGGCTTTGAAAGGTG
* **
5267 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTGTGTGGGCTTTG-AAAG-----GTG
5327 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACT
5361 TCGTTGCCAC
Statistics
Matches: 231, Mismatches: 17, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
54 19 0.08
55 171 0.74
56 7 0.03
59 16 0.07
60 18 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTGTGTGGGCTTTGAAAGGTG
Found at i:5234 original size:26 final size:26
Alignment explanation
Indices: 5205--5292 Score: 90
Period size: 26 Copynumber: 3.3 Consensus size: 26
5195 GTGGGCTTTA
5205 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
5231 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
5260 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
5286 AAAGGTG
1 AAAGGTG
5293 CCACCAACTG
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
25 3 0.06
26 19 0.39
27 6 0.12
28 6 0.12
29 12 0.24
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.28
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:6078 original size:55 final size:55
Alignment explanation
Indices: 5983--6298 Score: 352
Period size: 55 Copynumber: 5.7 Consensus size: 55
5973 ATAAAGTGTA
* * * * ** * *
5983 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACACGTGTGGACTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
6038 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
6093 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
6148 TCTTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* **
6203 TCC-GACTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTG-CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
*
6264 TCCTGCTCTTTGAGGACT-AAAGGTGCCAACAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
6299 CGTCCCCACA
Statistics
Matches: 227, Mismatches: 22, Indels: 19
0.85 0.08 0.07
Matches are distributed among these distances:
54 7 0.03
55 177 0.78
56 10 0.04
60 16 0.07
61 16 0.07
62 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:6197 original size:29 final size:29
Alignment explanation
Indices: 6165--6253 Score: 91
Period size: 29 Copynumber: 3.2 Consensus size: 29
6155 CTTTGGGGAC
6165 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
* *
6194 TGAAAGGGGTCCGA-C-TCTT-TG-GGGAC--
1 TGAAAGGTG-CC-ACCAACTTGTGTGGG-CTT
6220 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
6249 TGAAA
1 TGAAA
6254 AGAAAAAGCA
Statistics
Matches: 47, Mismatches: 4, Indels: 18
0.68 0.06 0.26
Matches are distributed among these distances:
24 1 0.02
25 3 0.06
26 11 0.23
27 6 0.13
28 6 0.13
29 16 0.34
30 3 0.06
31 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (29 bp):
TGAAAGGTGCCACCAACTTGTGTGGGCTT
Found at i:7015 original size:55 final size:55
Alignment explanation
Indices: 6920--7232 Score: 377
Period size: 55 Copynumber: 5.7 Consensus size: 55
6910 ATAAAGTGTA
* * * * * *
6920 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
6975 CCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
7030 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
7085 TCCTGCTCTTTG-GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* **
7139 TCCTGCTCTTTGGGGACTGAAAGGTGCCACC-ACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
7199 TCCTGCTC-TTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
7233 TGTCCCCACA
Statistics
Matches: 227, Mismatches: 19, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
53 4 0.02
54 64 0.28
55 120 0.53
56 6 0.03
58 12 0.05
59 12 0.05
60 9 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:7147 original size:109 final size:109
Alignment explanation
Indices: 6920--7190 Score: 368
Period size: 109 Copynumber: 2.5 Consensus size: 109
6910 ATAAAGTGTA
* * * * *
6920 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGCCCTACTCTT
1 TCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGCGCCCTACTCTT
*
6985 TGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTG
65 TGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGGG
* * *
7030 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGCCCTACTCTT
*
7095 TG-GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGGG
65 TGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGGG
* *
7139 TCCTGCTCTTTGGGGACTGAAAGGTGCCACC-ACTTGTGTGGGCTTTGAAAAG
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAAG
7191 AAAAAGCATC
Statistics
Matches: 145, Mismatches: 12, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
108 19 0.13
109 66 0.46
110 56 0.39
111 4 0.03
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (109 bp):
TCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGCCCTACTCTTT
GAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGGG
Found at i:7694 original size:934 final size:937
Alignment explanation
Indices: 2466--14492 Score: 16788
Period size: 937 Copynumber: 13.0 Consensus size: 937
2456 TCGGGCGCCG
2466 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
2531 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* * *
2596 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCTCTCTTTGGCCGTTTTTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
2661 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
* *
2726 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACAGTTTC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
2791 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
*
2856 CTCCTTAGACAAGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
* *
2921 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTGCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCA
2986 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
3051 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
*
3116 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGAAAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
3181 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
3246 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
3311 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
*
3376 TGTGGGCATTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
* *
3403 TTGGGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTCCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
*
3468 GGACTAAAGGGGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* * *
3533 AAATTGTCGAAAATTGGCCCAGACAAAATGAGGTGTCTGCAGTTGCCCCTCTTTGGCCGTTTTTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
* *
3598 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCTGCGGCCGCATGTTTTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
*
3663 GAGTGATTAAACAAGAGGTTTAATTTAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
3728 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
*
3793 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTAGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
*
3858 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCA
* *
3923 AGGACAAAGGAAAAGATGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGAA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
*
3988 AAGTGTCCTGCTTCTTGAGGATAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
*
4053 AAGGGAAATGAAATATGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
4118 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
* *
4183 TGAAAGGTGCCACCAACGTGTGTGGGCTATAAGAGGTGTCCTGCTCTTTGAGGATTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
*
4248 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAATTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
4313 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
*
4340 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AATGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
4404 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* * *
4469 AAATTATCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGGCCCTCTTTGGTCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
4534 A-TATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
*
4598 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGAGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
*
4663 GATGGAAAAATGAGTTTGTAGGGTTTGTCTCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
*
4728 CTCCTTAGACAGGTGTTGGTTACTACAGGCATTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
*
4793 TTGGGTGCTGCCAACTTGTGCAAACTTTAAGAGGGAAAAGAAATGGAAAAGGGTGTCCACTTTTC
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGG-AAAGGGTGTCCACTTTTC
*
4858 AAGGACAAAGGAAAAGATGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGG
520 AAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGG
*
4923 AAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCTATTTTCCAAGGACAAAGGAA
585 AAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAA
*
4988 AAAGGAAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGC
650 AAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGC
*
5053 TCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAAGA
715 TCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGA
*
5118 GTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATG
780 CTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATG
5183 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
845 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
*
5248 GTGTGGGCTTTGAAAGGTGTCCTGCTCT
910 GTGTGGGCTTTGAAAGGGGTCCTGCTCT
5276 TTGGGGACTGAAAGGTGCCACCAAC-TGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
** * * *
5340 GGACTAAAGGTGCCACCAACTTCGTTGCCACATATTTCAAATCCTCCACCTACTAGCTACGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
5405 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
* * *
5470 GGTCTCAAGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
*
5535 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGTCGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
* *
5600 GATGGAAAAATGAGTTTGTAAGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCAAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
*
5665 CTCCTTAGACAGGTGTTGGTTACTATAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
* *
5730 TTGGGTGCTGCCAACTTGTACAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCA
* *
5795 AGGACAAAGGAAAAGAGGATGAAATGAGTCTTGCACCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
* *
5860 AAGTGTCTTGCTTCTTGAGGATAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
5925 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
* *
5990 CATTGAGGAGTAAAAAGTGCCACCAACACGTGTGGACTTTGAAAGGCGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
6055 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
*
6120 CACCAACTTGTGTGGGCTTTAAAAGGTGTCTTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
6185 TGTGGGCTTTGAAAGGGGTCC-GACTCT
911 TGTGGGCTTTGAAAGGGGTCCTG-CTCT
6212 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
* * *
6277 GGACTAAAGGTGCCAACAACTTCGTCCCCACATATATCGAATCCTCTACTTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* * * *
6342 AAATTGTTGAAAATTGGCCCGGACAAGATGAGGTGTCTGCAGCAGCCCCTCTTTGGCCATTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
*
6407 AGTATCAGGAACGGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
*
6472 GAGTGATTAAACAAGTGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
6537 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
*
6602 CTCCTTAGAC-GGTGTTGGTTACTACAGGCTTTGGGTAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
6666 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGGAAAAGGGTGTCCACTTTTC
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGG-AAAGGGTGTCCACTTTTC
6731 AAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGG
520 AAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGG
*
6796 AACGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAA
585 AAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAA
6861 AAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGC
650 AAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGC
*
6926 TCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGCCCTACTCTTTGAGGA
715 TCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGA
6991 CTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATG
780 CTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATG
7056 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTT-GGGACTGAAAGGTGCCACCAACTT
845 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
7120 GTGTGGGCTTTGAAAGGGGTCCTGCTCT
910 GTGTGGGCTTTGAAAGGGGTCCTGCTCT
7148 TTGGGGACTGAAAGGTGCCACC-ACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTC-TTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
*
7211 GGACTAAAGGTGCCACCAACTTTGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
7276 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
*
7341 AGTATCAGGAACACGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
7406 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
*
7471 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGACTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
*
7536 CTCCTTAGATAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
* *
7601 TTGGGTGCTGCCAACTTGTGCAAATTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCA
*
7666 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGGCCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
*
7731 AAGTGTCCTGCTTCTTGAGGATAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
*
7796 AAGGGAAATGAAATTCGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
* *
7861 CATTGAGGAGTAAAAAGTGCCACCAACTCGAGTGGGCTTTGAAAGACGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
*
7926 TGAAAGGTGCCACCAACGTGTGTGGGCTTTACGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
7991 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
8056 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
8083 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
8148 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* *
8213 AAATTATCGAAAATTGGCCCGGACAAGATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
* *
8278 AGTATCAGGAACGGGGCAAAGACAAATAGACACCATTTTATCCGCGACCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
*
8343 GAGTGATTAAACAAGTGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
8408 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGA-TTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
* *
8472 CTCTTTAGACAGGTGTTGGTTACTACAAGCTTT-GGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
*
8536 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCA
8601 AGGACAAAGGAAAAGAGGATGAAAT-GGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
*
8665 AAGTGTCCTGCTTCCTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
8730 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
*
8795 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAT
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
*
8860 TGAAAGGTGCCACCGACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
*
8925 CACCAACTTGTGTAGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
*
8990 TGTGGGCTTTGCAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
*
9017 TTGGGGACTGAAATGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
9082 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* * *
9147 AAATTGTCGAAAATTGGCCTGGACAAAATGAAGTGTCTCCAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
* *
9212 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTAACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
* *
9277 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGGTGGAGGGTGTATTGGCGACGGTTTC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
9342 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
9407 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
* *
9472 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCAATTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCA
*
9537 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCACCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
* *
9602 AAGTGTCCTGCTTCTTGAGGATAAAGTGAAAAACAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
* **
9667 AAGGGAAATGAAATACGTCCTACTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTATT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
* * *
9732 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCATGCTCTTTGAGGAT
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
* * * *
9797 TGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACT-GAAAGGTG
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAA-ATG
* *
9861 CCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
845 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
* **
9926 GTGTGGGCTTAGGAAAGAAAAAGCATCCTGCTCT
910 GTGTGGGCTT-TGAAAG-----GGGTCCTGCTCT
* * *** ** ** **** * ***
9960 TTGAGGACT-AAAGGTGCCACCAACTT-CGTCCCCACAT-ATATCGAATCCTCCA-CCTACTAGC
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TTTGA-AAAGAA-AAAGCATCCTGCTCTT
* * * * * ** * * * * * * ***
10021 T-AGGCCTTAAA-TTGTCGA--AAATT-GACCCGGGCA-AAAT-GAGGTGTCTACAGCTGCCCCT
63 TGAGGAC-TAAAGGTG-CCACCAACTTCGTCCC-CACATATATCGA-AT-CCTCCACCT-ACTAG
* * ** * * * * *** ** * * * *
10079 CTTTGTCCGTTTCTGAGTATCAGGAACA-GGGCAAAGACAAAATAGACACCAT-TTTATCTGCGG
122 C-TAGGCC--TT-AAATTGTC--GAAAATTGGCCCGGACAAAAT-G--A-GGTGTCT-GCAGCTG
* * * * * *** ** *
10142 CCGCATGTTGTGACC--TT-AGAGTGATTA--AACAAGAGGTTTA-ATTAA-AGCTTCACCA--T
176 CC-CCTCTT-TGGCCGTTTCTGAGT-ATCAGGAAC-AG-GGCAAAGACAAATAG--ACACCATTT
* * * ** * * * * * * * ** * **
10198 GAT-GGAGGGTGTAT-TGGCGACGGTTCCGA-TGGA--AAA-ATGA-GTTT--GTAGGGTTTGTC
234 TATCCGCGGCCGCATGTTGTGAC-CTT-AGAGT-GATTAAACAAGAGGTTTAATTAAAGCTTCAC
* ** ** * * * * * **** **** * *
10254 CCTCCTACTA-GGT-T-TT-GAGA--TTTTCTAAGGCTTGACCTCTTTAGACAGGTGTTGGT---
296 CATGAT-GGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTT-G-TAGG-GTTTGTCCC
** * * * * * *** * * * *
10310 TACTAC-AGGCTTTG-G------GAAGGTTTGCCACTAACTT-GTGTGGGCTTTTGGGTGCTGCC
357 CCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC-CT-CCTTAG-ACAGG-TGTTGGTTACT-AC
* * ** * ** ** ** **** *
10366 A-AC-TTGTGCAAACTTTAG-GAGGGAA-AAGAAAT-GG--AAAAGGGTG-T-CC-ACTT-TTCA
417 AGGCTTTG-GGAAGGTTT-GCCA-CTAACTTG-TGTGGGCTTTTTGGGTGCTGCCAACTTGTGCA
* * *
10420 AGGAC---A--AAGGAAAAGAGGAT-GAAATGG-GT---C-------------------------
478 A--ACTTTAGGAGGGAAAAGA-AATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGA
*
10450 -----------TTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTCGAG
540 TGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAG
*
10504 GACAAAGTGAAAAAGAGTACGTCTCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTC
605 GACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTC
*
10569 CTGCTCTCTGAGGACAAAGAAAAAGGAAAATAAAGTGTATCCTGCTCA-TGAGGAGTAAAAAGTG
670 CTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTG
*
10633 CCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGATTGAAAGGTGCCACCAACGT
735 CCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGT
10698 GTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTT
800 GTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTT
10763 TAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
865 TAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGG-TGCCACCAACTTGTGTGGGCTTTGAAAGGGG
10828 TCCTGCTCT
929 TCCTGCTCT
10837 TT-GGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAGCATCCTGCTCTTTG
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AAAAAGCATCCTGCTCTTTG
*
10901 AGGACAAAAGGTGCCA-CAACTTCGTCCCCACATATATCGAATCCTCCACCT-CTAGCTAGGCCT
65 AGGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCT
*
10964 T-AATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTCCAGCTGCCCCTCTTTGGCCGTTTCT
130 TAAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCT
*
11028 GAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTT
195 GAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTT
*
11093 AGAGTGATTAAAC-AGAGGTTTAATTAACGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTC
260 AGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTC
11157 CGATGGAAAAATGAGTTTGTAGGGTTTTGT-CCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTG
325 CGATGGAAAAATGAGTTTGTAGGG-TTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTG
11221 ACCTCCTTAGACAGGTGTTGGTTACTACAGGC-TTGGGAAGGTTTGCCACTAACTTGTGTGGGCT
389 ACCTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCT
11285 TTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGGAAAAGGGTGTCCACTTT
454 TTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGG-AAAGGGTGTCCACTTT
11350 TCAAGGAC-AAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAAGAAA
518 TCAAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAG-AAGAAA
* *
11414 AGGAAAGTTTCCTGCTTCTTGAGGACAAAGTGAAAAATAGTACGTCCTCATTTTCCAAGGACAAA
582 AGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCC-CATTTTCCAAGGACAAA
11479 GGAAAAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATC
646 GGAAAAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATC
*
11544 CTACTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTG
711 CTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTG
* *
11609 AGGACTGAAAGGTGCCACCAACGTGTATGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGATTGGAA
776 AGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAA
*
11674 AATGCCACCAACTTGTGTGGTCTTT-AAAGGTGTCCCTGCTC-TTGGGGACTGAAAGGTGCCACC
841 AATGCCACCAACTTGTGTGGGCTTTAAAAGGTGT-CCTGCTCTTTGGGGACTGAAAGGTGCCACC
** **
11737 AACTTGTGTGGGCGTAGGAAAGAAAAAGCATCCTGCTCT
905 AACTTGTGTGGGC-TTTGAAAG-----GGGTCCTGCTCT
* * *** ** ** **** * ***
11776 TTGAGGACT-AAAGGTGCCACCAACTT-CGTCCCCACAT-ATATCGAATCCTCCA-CCTACTAGC
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TTTGA-AAAGAA-AAAGCATCCTGCTCTT
* * * * * * * ** ** * * * ***
11837 T-AGGCCTTAAA-TTGTCGA--AAATT-GACCCCGGGCAAAATAAGGTGT-CTACAGCTGCCCTC
63 TGAGGAC-TAAAGGTG-CCACCAACTTCGTCCCC--AC-ATATATCGAATCCTCCACCTACTAGC
* ** * * * * *** ** * * * * *
11896 TTTGGCCGTTTCTGAGTATCAGAACA-GGGCAAAGAC-AAATAGACACCATTTTTATCTGCGGCC
123 -TAGGCC--TT-AAATTGTC-GAAAATTGGCCCGGACAAAAT-G--A-GGTGTCT-GCAGCTGCC
* * * * * *** ** * ** *
11959 GCATGTTGTGACC--TT-AGAGTGATTA--AACAAGAGGTTTA-ATTAA-AGCTTCACCATGATG
178 -CCTCTT-TGGCCGTTTCTGAGT-ATCAGGAAC-AG-GGCAAAGACAAATAG--ACACCATTTTA
** * * * * * * * * * * * * * *
12017 TAGGAGG-TGTAT-TGGCGACTGTTCCGA-TG--GAAA-ATGAGTTTGTAGGGTT--TG-TCCCC
236 TCCGCGGCCGCATGTTGTGAC-CTT-AGAGTGATTAAACAAGAGGTT-TA--ATTAAAGCTTCAC
* * * * * * ** * * * *
12073 CCT-ACT--A--GT-T-TTGGAGA--TTTTCTAAGG---CTTGACCTCCTTAGACATGTGTTGGT
296 CATGA-TGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGA-GT--TT-G-TA-GGGTTTGT
** * * * * ** * **
12126 ---TACTAC-AGG-CTTG-G------GAAGGTTTG-CCACC-TA-ACTTGTGTGGGCTT--T-TT
354 CCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGACAGGTGTTGG-TTACTACA
* * ** * * ***** *
12173 GGGTGCTGCCAA-CTTGTG-CA--AACTT-TAGGAGGGAAAAGAAATGGAAAAG-GGTGTCC-AC
418 GGCT-TTGGGAAGGTT-TGCCACTAACTTGT--GTGGG---CTTTTTGG----GTGCTG-CCAAC
* * * ** * * *
12231 TT-TTCAAGGAC---A--AAGGAAAAGAGGAT-GAAATGGG-GTCTTGCTCCTTGAA-GACCAA-
471 TTGTGCAA--ACTTTAGGAGGGAAAAGA-AATGGAAA-GGGTGTC-CACT-TTTCAAGGACAAAG
12286 G----GA--A-G--------------------------------AGAAGAAAAGGAAAGTGTCCT
530 GAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCT
12312 GCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAAT
595 GCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAAT
*
12377 GAAATATGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAAT-AAGTGTATCCTGCTCATTGAGGA
660 GAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGA
* * *
12441 GTAGAAAGTGCCACCAACTCATGTGGGCTTTGAAAGGCATCCTACTCTTTGAGGACTGAAAGGTG
725 GTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTG
* *
12506 CCACC-ACGTGTATGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTT
790 CCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTT
* *
12570 GTGTGGGCTTTAAATGGTGTCCTGCTCTTTGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTT
855 GTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTT
*
12635 TGAAAGGGGTCCTACTCT
920 TGAAAGGGGTCCTGCTCT
12653 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
12718 GGACTAAAGGTGCCACCAAC-TCGGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCT
66 GGACTAAAGGTGCCACCAACTTC-GTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCT
*
12782 TAAATTGGTCGAAAATTGGCTCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTT
130 TAAATT-GTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCG-TTT
*
12847 CTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCTGCGGCCGCATGTTTGTGAC
193 CTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATG-TTGTGAC
12912 CTTAGAGTGATTAAACAAGAGGTTTAATT-AAGCTTCACCATGATGGAGGGTGTATTGGCGACGG
257 CTTAGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGG
12976 TTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTTGAGATTTTCTAAGGC
322 TTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGG-TTTTGAGATTTTCTAAGGC
*
13041 TTAACCTCCTTAGACAGGTGTTGGTTACTACAGGCTTTTGGGAAGG-TTGCCACTAACTTGTGTG
386 TTGACCTCCTTAGACAGGTGTTGGTTACTACAGGC-TTTGGGAAGGTTTGCCACTAACTTGTGTG
13105 GGCTTTTTGGGTGCTGCCAACTTGTGCAAAC-TTAGGAGGGAAAAGAAATGGAAAAGGGTGTCCA
450 GGCTTTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGG-AAAGGGTGTCCA
13169 CTTTTCAAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACC-AGGAAGAGAAG
514 CTTTTCAAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAG
*
13233 -AAAGGAAAGTGTCCTGCTTC-TGAGGACAAAG-GAAAAAGAGTACGTCCCATTTCCCAAGGACA
579 AAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACA
* *
13295 AAGGAAAAAGGGAAATG-AAT-CGTCCTGCTCTTTGAGGACAAAGAAAGAAAGGAAAGAGGAAAA
644 AAGGAAAAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAG--AGG--A-A--AATA
13358 AAGTG-ATCCTGCTCATTGAGGAGTAAAAAGTG-CACCAACTCGTGT-GGCTTTGAAAGGCGTCC
702 AAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
*
13420 TACTCTTTGAGGACTGAAAGGTGCCACCAA-GTGTATGGGCTTTAAGAGGTGTCCTGCTCTTTGA
767 TACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGA
* *
13484 GGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAATGGTTGTCCTGCTCTTTGGGGACTG-AA
832 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGG-TGTCCTGCTCTTTGGGGACTGAAA
*
13548 GGTGCCACCAA-TTGTGTGGGCTTTGAAA-GGGTCCTACTC-
896 GGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCT
*
13587 -TGGGGACTGAAAGGTGCCAACAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGC-CTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
*
13650 GGACTAAAGGTG-CACCAACCCTCG-CCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCT
66 GGACTAAAGGTGCCACCAA-CTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCT
13713 TAAATTGTCGAAAATTGGCCCGG-C-AAATGAGGTGTCTGCAGCTGTGCCCCTC--TGGCCGTTT
130 TAAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGC--TGCCCCTCTTTGGCCGTTT
*
13774 C-GAGTATC-GGAACAGGGCAAAGAC-AATAGACACCATTTTATCTGCCGG-C-CATGTTGTGAC
193 CTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCG-CGGCCGCATGTTGTGAC
13834 CTTAGAGTGATTAAAC-AGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGG
257 CTTAGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGG
13898 TTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGA-TTTCTAAGGCT
322 TTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCT
*
13962 T-AACTCCTTAGACAGGTGTTGGTTACTACAGGCTTT-GGAAGGTTTGCCACTAAACTTGTGTGG
387 TGACCTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACT-AACTTGTGTGG
14025 GCTTTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAG-AATGGAAAAGGGTGTCCAC
451 GCTTTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGG-AAAGGGTGTCCAC
14089 TTTTCAAGGACAAAGGAAAAGAGGATGAAATGGGTCTTTGCTCCTTGAACGA-CAAGGAAGAGAA
515 TTTTCAAGGACAAAGGAAAAGAGGATGAAATGGGTC-TTGCTCCTTGAA-GACCAAGGAAGAGAA
14153 GAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGAC
578 GAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGAC
*
14218 AAAAGGAAAAAGGGAAATGAAATACGTCCTGCTCTTTGA-GACAAAGAAAGAGGAAAATAAAGTG
643 -AAAGGAAAAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTG
14282 TATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAA-GCGTCCTACT-
707 TATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTC
* * *
14345 TTT-AGGACTGAAAGGTGCCACCAACGTGTAT-GGATTTAAGAGGTGTCCTGCTCTTTG-GGATT
772 TTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACT
* *
14407 GGAAAAATGCC-CCAACTTGTGT-GGCTTTAAATGGTGTCCTGCTCTTTGGGGACTGAAAGGCG-
837 GG-AAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGC
*
14469 CACCAACTTTTGTGGGCTTTGAAA
901 CACCAACTTGTGTGGGCTTTGAAA
14493 AGAAAAAGCA
Statistics
Matches: 9907, Mismatches: 782, Indels: 822
0.86 0.07 0.07
Matches are distributed among these distances:
865 4 0.00
866 4 0.00
867 20 0.00
868 12 0.00
869 12 0.00
870 18 0.00
871 25 0.00
872 14 0.00
873 23 0.00
874 29 0.00
875 18 0.00
876 29 0.00
877 80 0.01
878 70 0.01
879 53 0.01
880 17 0.00
881 10 0.00
882 264 0.03
883 333 0.03
884 84 0.01
885 73 0.01
886 9 0.00
887 13 0.00
888 10 0.00
889 5 0.00
890 1 0.00
891 2 0.00
892 10 0.00
893 5 0.00
894 7 0.00
895 13 0.00
896 9 0.00
897 11 0.00
898 31 0.00
899 10 0.00
900 9 0.00
901 5 0.00
902 5 0.00
903 3 0.00
905 1 0.00
906 1 0.00
916 27 0.00
917 39 0.00
918 30 0.00
919 190 0.02
920 75 0.01
921 60 0.01
922 141 0.01
923 35 0.00
924 66 0.01
925 71 0.01
926 40 0.00
927 28 0.00
928 39 0.00
929 17 0.00
930 37 0.00
931 59 0.01
932 89 0.01
933 136 0.01
934 1612 0.16
935 860 0.09
936 1615 0.16
937 2803 0.28
938 65 0.01
939 95 0.01
940 37 0.00
941 15 0.00
942 51 0.01
943 26 0.00
944 18 0.00
945 25 0.00
946 32 0.00
947 33 0.00
948 41 0.00
949 16 0.00
950 24 0.00
951 4 0.00
952 4 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (937 bp):
TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCA
AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
TGTGGGCTTTGAAAGGGGTCCTGCTCT
Found at i:7951 original size:55 final size:55
Alignment explanation
Indices: 7854--8169 Score: 377
Period size: 55 Copynumber: 5.7 Consensus size: 55
7844 ATAAAGTGTA
* * * * * * *
7854 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGAGTGGGCTTTGAAAGACG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
7909 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-ACGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGA-AAGGCG
* * *
7964 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
8019 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
8074 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
8135 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
8170 CGTCCCCACA
Statistics
Matches: 229, Mismatches: 22, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
54 5 0.02
55 180 0.79
56 9 0.04
60 17 0.07
61 18 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:8041 original size:26 final size:26
Alignment explanation
Indices: 8012--8099 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
8002 GTGGGCTTTA
8012 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
8038 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
8067 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
8093 AAAGGTG
1 AAAGGTG
8100 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:8883 original size:55 final size:55
Alignment explanation
Indices: 8788--9103 Score: 359
Period size: 55 Copynumber: 5.7 Consensus size: 55
8778 ATAAAGTGTA
* * * * * *
8788 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * * *
8843 TCCTACTCTTTGAGGATTGAAAGGTGCCACCGACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* * *
8898 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTAGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
8953 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * **
9008 TCCTGCTCTTTGGGGACTGAAATGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
9069 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
9104 CGTCCCCACA
Statistics
Matches: 224, Mismatches: 27, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
54 6 0.03
55 175 0.78
56 9 0.04
60 16 0.07
61 18 0.08
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:9820 original size:55 final size:55
Alignment explanation
Indices: 9734--9985 Score: 326
Period size: 55 Copynumber: 4.5 Consensus size: 55
9724 ATCCTATTCA
* * * * *
9734 TTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCATGCTCT
1 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * *
9789 TTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* *
9844 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCT
1 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * *
9899 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTAGGAAAGAAAAAGCATCCTGCTCT
1 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTT-TGAAAG-----GCGTCCTGCTCT
9960 TTGAGGACT-AAAGGTGCCACCAACTT
1 TTGAGGACTGAAAGGTGCCACCAACTT
9986 CGTCCCCACA
Statistics
Matches: 176, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
55 136 0.77
56 5 0.03
60 17 0.10
61 18 0.10
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (55 bp):
TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
Found at i:9857 original size:26 final size:26
Alignment explanation
Indices: 9828--9915 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
9818 GTGGGCTTTA
9828 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
9854 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
9883 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
9909 AAAGGTG
1 AAAGGTG
9916 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:9884 original size:29 final size:29
Alignment explanation
Indices: 9796--9935 Score: 102
Period size: 29 Copynumber: 5.0 Consensus size: 29
9786 TCTTTGAGGA
9796 TTGAAAGGTGCCACCAACTTGTGTGGGCT
1 TTGAAAGGTGCCACCAACTTGTGTGGGCT
* ** *
9825 TTAAAAGGTGTCCTGC-TCTT-TG-GGGAC-
1 TTGAAAGGTG-CCACCAACTTGTGTGGG-CT
9852 -TGAAAGGTGCCACCAACTTGTGTGGGCT
1 TTGAAAGGTGCCACCAACTTGTGTGGGCT
* ** *
9880 TTGAAAGGGGTCCTGC-TCTT-TG-GGGAC-
1 TTGAAAGGTG-CCACCAACTTGTGTGGG-CT
9907 -TGAAAGGTGCCACCAACTTGTGTGGGCT
1 TTGAAAGGTGCCACCAACTTGTGTGGGCT
9935 T
1 T
9936 AGGAAAGAAA
Statistics
Matches: 81, Mismatches: 16, Indels: 28
0.65 0.13 0.22
Matches are distributed among these distances:
25 6 0.07
26 22 0.27
27 12 0.15
28 12 0.15
29 23 0.28
30 6 0.07
ACGTcount: A:0.19, C:0.20, G:0.32, T:0.29
Consensus pattern (29 bp):
TTGAAAGGTGCCACCAACTTGTGTGGGCT
Found at i:10825 original size:56 final size:55
Alignment explanation
Indices: 10608--10877 Score: 368
Period size: 55 Copynumber: 4.9 Consensus size: 55
10598 ATAAAGTGTA
* * * * * *
10608 TCCTGCTC-ATGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
10662 TCCTACTCTTTGAGGATTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
10717 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
10772 TCCTGCTCTTTGGGGACTGAAAGGTTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGG-TGCCACCAACTTGTGTGGGCTTTGAAAGGTG
10828 TCCTGCTCTTTG-GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
10878 AGAAAAAAGC
Statistics
Matches: 194, Mismatches: 16, Indels: 12
0.87 0.07 0.05
Matches are distributed among these distances:
54 40 0.21
55 107 0.55
56 47 0.24
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:11626 original size:55 final size:54
Alignment explanation
Indices: 11542--11801 Score: 238
Period size: 55 Copynumber: 4.7 Consensus size: 54
11532 ATAAAGTGTA
* * * * * *
11542 TCCTACTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAGGCG
* * * *
11597 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTATGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AGGCG
* * * *
11652 TCCTGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTGTGTGGTCTTTAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGGCG
* ** *
11706 TCCCTGCTC-TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCGTAGGAAAGAAAAAGCA
1 T-CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-T-TTAAAG-----GCG
11767 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
11802 CGTCCCCACA
Statistics
Matches: 170, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
53 4 0.02
54 34 0.20
55 90 0.53
56 8 0.05
60 24 0.14
61 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGGCG
Found at i:11737 original size:54 final size:54
Alignment explanation
Indices: 11533--11749 Score: 240
Period size: 55 Copynumber: 4.0 Consensus size: 54
11523 AAGAGGAAAA
* * * * * * *
11533 TAAAGTGTATCCTACTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTT
1 TAAAG-GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTT
* * * *
11588 TGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTATGGGCTT
1 T-AAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTT
* * *
11643 TAAGAGGTGTCCTGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTGTGTGGTCTT
1 TAA-AGGTGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTT
*
11698 TAAAGGTGTCCCTGCTC-TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGC
1 TAAAGGTGT-CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC
11750 GTAGGAAAGA
Statistics
Matches: 137, Mismatches: 20, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
53 4 0.03
54 34 0.25
55 91 0.66
56 8 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (54 bp):
TAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTT
Found at i:12508 original size:55 final size:55
Alignment explanation
Indices: 12424--12738 Score: 327
Period size: 55 Copynumber: 5.7 Consensus size: 55
12414 AAATAAGTGT
* * **
12424 ATCCTGCTCATTGAGGAGTAGAAA-GTGCCACCAACTCATGTGGGCTTTGAAAGGC
1 ATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
* * * *
12479 ATCCTACTCTTTGAGGACTGAAAGGTGCCACC-ACGTGTATGGGCTTT-AAGAGGT
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGC
* * * *
12533 GTCCTGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAATGGT
1 ATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-GGC
* * * *
12588 GTCCTGCTCTTTGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGG
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
* * *
12643 GTCCTACTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GC
12704 ATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACT
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACT
12739 CGGTCCCCAC
Statistics
Matches: 222, Mismatches: 25, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
53 2 0.01
54 45 0.20
55 135 0.61
56 7 0.03
60 16 0.07
61 17 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
Found at i:12616 original size:109 final size:109
Alignment explanation
Indices: 12425--12737 Score: 346
Period size: 109 Copynumber: 2.8 Consensus size: 109
12415 AATAAGTGTA
* * **
12425 TCCTGCTCATTGAGGAGTAGAAAGTGCCACCAACTCATGTGGGCTTTGAAAGGCATCCTACTCTT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTT
* *
12490 TGAGGACTGAAAGGTGCCACC-ACGTGTATGGGCTTT-AAGAGGTG
65 TGAGGACTAAAAGGTGCCACCAACGTGTATGGGCTTTGAA-AGGGG
* * ** *
12534 TCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAATGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAA-GGCATCCTACTCT
* * *
12598 TTGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
64 TTGAGGACTAAAAGGTGCCACCAACGTGTATGGGCTTTGAAAGGGG
* *
12644 TCCTACTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCT
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCATCCT
*
12709 GCTCTTTGAGGACT-AAAGGTGCCACCAAC
59 ACTCTTTGAGGACTAAAAGGTGCCACCAAC
12738 TCGGTCCCCA
Statistics
Matches: 172, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
108 3 0.02
109 75 0.44
110 55 0.32
111 3 0.02
112 3 0.02
115 15 0.09
116 18 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (109 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTT
GAGGACTAAAAGGTGCCACCAACGTGTATGGGCTTTGAAAGGGG
Found at i:12641 original size:29 final size:29
Alignment explanation
Indices: 12608--12694 Score: 87
Period size: 29 Copynumber: 3.1 Consensus size: 29
12598 TTGGGGACTA
12608 AAAGGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGTGCCACCAACTTGTGTGGGCTTTG
* *
12637 AAAGGGGTCCTA-C-TCTT-TG-GGGAC--TG
1 AAAGGTG-CC-ACCAACTTGTGTGGG-CTTTG
12663 AAAGGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGTGCCACCAACTTGTGTGGGCTTTG
12692 AAA
1 AAA
12695 AGAAAAAGCA
Statistics
Matches: 45, Mismatches: 4, Indels: 18
0.67 0.06 0.27
Matches are distributed among these distances:
24 1 0.02
25 3 0.07
26 11 0.24
27 6 0.13
28 6 0.13
29 14 0.31
30 3 0.07
31 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (29 bp):
AAAGGTGCCACCAACTTGTGTGGGCTTTG
Found at i:13554 original size:55 final size:55
Alignment explanation
Indices: 13364--13627 Score: 271
Period size: 54 Copynumber: 4.9 Consensus size: 55
13354 AAAAAAGTGA
* * * * * * *
13364 TCCTGCTCATTGAGGAGTAAAAAGTG-CACCAACTCGTGT-GGCTTTGAAAGGCG
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
13417 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAA-GTGTATGGGCTTT-AAGAGGTG
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* * *
13471 TCCTGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAATGGTTG
1 TCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-GG-TG
* *
13527 TCCTGCTCTTTGGGGACTG-AAGGTGCCACCAA-TTGTGTGGGCTTTGAAAGG-G
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
13579 TCCTACTC--TGGGGACTGAAAGGTGCCAACAACTTGTGTGGGCTTTGAAA
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
13628 AGAAAAAGCA
Statistics
Matches: 181, Mismatches: 19, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
50 9 0.05
51 12 0.07
52 25 0.14
53 26 0.14
54 59 0.33
55 32 0.18
56 18 0.10
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (55 bp):
TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:13568 original size:109 final size:106
Alignment explanation
Indices: 13364--13627 Score: 288
Period size: 109 Copynumber: 2.5 Consensus size: 106
13354 AAAAAAGTGA
* * *
13364 TCCTGCTCATTGAGGAGTAAAAAGTG-CACCAACTCGTGT-GGCTTTGAAAGGCGTCCTACTCTT
1 TCCTGCTC-TTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTT
13427 TGAGGACTGAAAGGTGCCACCAAGTGTATGGGCTTT-AAGAGGTG
64 TGAGGACTGAAAGGTGCCACCAAGTGTATGGGCTTTGAA-AGG-G
* * *
13471 TCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAATGGTTGTCCTGCTC
1 TCCTGCTC-TTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAA-GG-CGTCCTACTC
* * *
13535 TTTGGGGACTG-AAGGTGCCACCAATTGTGTGGGCTTTGAAAGGG
62 TTTGAGGACTGAAAGGTGCCACCAAGTGTATGGGCTTTGAAAGGG
* * * *
13579 TCCTACTC-TGGGGACTGAAAGGTGCCAACAACTTGTGTGGGCTTTGAAA
1 TCCTGCTCTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAA
13628 AGAAAAAGCA
Statistics
Matches: 135, Mismatches: 14, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
105 4 0.03
106 28 0.21
107 21 0.16
108 27 0.20
109 35 0.26
110 20 0.15
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (106 bp):
TCCTGCTCTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTG
AGGACTGAAAGGTGCCACCAAGTGTATGGGCTTTGAAAGGG
Found at i:14475 original size:53 final size:52
Alignment explanation
Indices: 14284--14488 Score: 148
Period size: 53 Copynumber: 3.8 Consensus size: 52
14274 ATAAAGTGTA
* * * * * *
14284 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-A-GCG
1 TCCTGCTCTTTG-GGACTGAAAGGTG-CACCAACTTGTGT-GGCTTT-AAGAGGTG
* * * * *
14338 TCCTACT-TTTAGGACTGAAAGGTGCCACCAACGTGTATGGATTTAAGAGGTG
1 TCCTGCTCTTTGGGACTGAAAGGTG-CACCAACTTGTGTGGCTTTAAGAGGTG
* ** *
14390 TCCTGCTCTTTGGGATTGGAAAAATGCCCCAACTTGTGTGGCTTTAA-ATGGTG
1 TCCTGCTCTTTGGGACT-GAAAGGTGCACCAACTTGTGTGGCTTTAAGA-GGTG
* *
14443 TCCTGCTCTTTGGGGACTGAAAGGCGCACCAACTTTTGTGGGCTTT
1 TCCTGCTCTTT-GGGACTGAAAGGTGCACCAACTTGTGT-GGCTTT
14489 GAAAAGAAAA
Statistics
Matches: 118, Mismatches: 26, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
50 2 0.02
51 6 0.05
52 30 0.25
53 57 0.48
54 23 0.19
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (52 bp):
TCCTGCTCTTTGGGACTGAAAGGTGCACCAACTTGTGTGGCTTTAAGAGGTG
Found at i:15192 original size:864 final size:869
Alignment explanation
Indices: 12479--15364 Score: 2525
Period size: 919 Copynumber: 3.2 Consensus size: 869
12469 TTTGAAAGGC
* * * * * * * *
12479 ATCCTACTCTTTGAGGACTGAAAGGTGCCACC-ACGT-GTATGGGCTTT-AAGAGGTGTCCTGCT
1 ATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAAC-TCGTGTGGGCTTTGAA-AGGCGTCCTACT
* * * *
12541 CTTTGAGGATTGGAAA-ATGCCACCAACTTGTG-TGGGCTTTAA-ATGGTGTCCTGCTCTTTGGG
64 CTTTGAGGACT-GAAAGGTGCCACCAACGTG-GATGGGATTTAAGA-GGTGTCCTGCTCTTT-GG
*
12603 GACT--AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTACTCTTTGGGGACTGAAA
125 GACTGGAAAA--TGCCACCAACTTGTGTGGGCTTT-AAAGGTGTCCTACTCTTTGGGGACTGAAA
12666 GGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGC
187 GGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGC-CTTTGAGGACTAAAGGTG-
*
12731 CACCAA--CTCGGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGGTCGA
250 CACCAACCCTC-G-CCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAACT-GTCGA
*
12794 AAATTGGCTCGGACAAAATGAGGTGTCTGCAGC-TGCCCCTCTTTGGCCGTTTTCTGAGTATCAG
312 AAATTGGCCCGG-C-AAATGAGGTGTCTGCAGCGTGCCCCTC--TGGCCG-TTTC-GAGTATC-G
12858 GAACAGGGCAAAGACAAATAGACACCATTTTATCTG-CGGCCGCATGTTTGTGACCTTAGAGTGA
370 GAACAGGGCAAAGAC-AATAGACACCATTTTATCTGCCGG-C-CATG-TTGTGACCTTAGAGTGA
12922 TTAAACAAGAGGTTTAATT-AAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGA
431 TTAAAC-AGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGA
12986 AAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTTGAGATTTTCTAAGGCTTAACCTCCT
495 AAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGG-TTTTGAGA-TTTCTAAGGCTTAA-CTCCT
13051 TAGACAGGTGTTGGTTACTACAGGCTTTTGGGAAGG-TTGCCACT-AACTTGTGTGGGCTTTTTG
557 TAGACAGGTGTTGGTTACTACAGGC-TTT-GGAAGGTTTGCCACTAAACTTGTGTGGGCTTTTTG
13114 GGTGCTGCCAACTTGTGCAAAC-TTAGGAGGGAAAAGAAATGGAAAAGGGTGTCCACTTTTCAAG
620 GGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAG-AATGGAAAAGGGTGTCCACTTTTCAAG
*
13178 GACAAAGGAAAAGAGGATGAAATGGGTC-TTGCTCCTTGAA-GACCAGGAAGAGAAG-AAAGGAA
684 GACAAAGGAAAAGAGGATGAAATGGGTCTTTGCTCCTTGAACGACAAGGAAGAGAAGAAAAGGAA
*
13240 AGTGTCCTGCTTC-TGAGGACAAAG-GAAAAAGAGTACGTCCCATTTCCCAAGGAC-AAAGGAAA
749 AGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAAGGAAA
* * *
13302 AAGGGAAATG-AAT-CGTCCTGCTCTTTGAGGACAAAGAAAGAAAGGAAAGAGGAAAAAAGTG-
814 AAGGGAAATGAAATACGTCCTGCTCTCT-AAGACAAAGAAAG--AGG--A-A--AATAAAGTGT
13363 ATCCTGCTCATTGAGGAGTAAAAAGTG-CACCAACTCGTGT-GGCTTTGAAAGGCGTCCTACTCT
1 ATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCT
* * *
13426 TTGAGGACTGAAAGGTGCCACCAA-GTGTATGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGATTG
66 TTGAGGACTGAAAGGTGCCACCAACGTGGATGGGATTTAAGAGGTGTCCTGCTCTTTG-GGACTG
*
13490 GAAAATGCCACCAACTTGTGTGGGCTTTAAATGGTTGTCCTGCTCTTTGGGGACTG-AAGGTGCC
130 GAAAATGCCACCAACTTGTGTGGGCTTTAAA-GG-TGTCCTACTCTTTGGGGACTGAAAGGTGCC
* * * * *
13554 ACCAA-TTGTGTGGGCTTTG-AAAG-----G-GTCCT-ACTCTGGGGACTGAAAGGTGCCAACAA
193 ACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCCTTTGAGGACT-AAAGGTG-CACCAA
** * *** * * ** * * * * * * * *
13610 CTTGTGTGGGCTTTGA-AAAGA-AAAAGCATCCTGCCT--TTG--AGGAC-TAAAGGTGCACCAA
256 C---CCT-CGC-CCCACATATATCGAATCCTCC-ACCTACTAGCTAGGCCTTAAA-CTG-TCGAA
*** * * * * * * * * **
13668 CCCTCGCCC--CACAT-A--TATC-GAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAA
313 AATTGGCCCGGCAAATGAGGTGTCTGCAGCGTGC-CC--CT--CT-GGCC----GTT-TCGAGTA
* ** ** * ** **** * * * ***
13727 TTGG--CCCGGCAAATGA-GGT-GTCTGCAGCTGTGCCCCT-CTGGCCGT-TTCGAGTATCGGAA
367 TCGGAACAGGGCAAA-GACAATAGACACCA--T-TTTATCTGCCGGCCATGTT-GTG-A-CCTTA
* * * ***** ** * * * * * *
13786 CAGGGCA--AAGACAATAGACACCATTTTATCTGCCGGCCATGTTGTGACCTTAGAGTG-ATTAA
425 GAGTG-ATTAA-AC-AGAGGTTTAATTAAAGCT-TC-ACCATGATG-G-----AGGGTGTATT-G
* ** ** ** *** * ** *
13848 ACAGA-GGTT-TAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGT-TCCGATGGAAA
478 GC-GACGGTTCCGATGGAA-----A--A--AT-GAGTTTGTA--GG-GTTTGTCCCCCCT---AC
* * * **** * ** *
13910 AATGAG-TTTGTAGGGTTTGTCCCCCCT-ACTAGGTTTTGAGATTTCTAAG-GCTTAACTCCTTA
526 TA-G-GTTTTG-A-GATTTCTAAGGCTTAACT---CCTT-AGA---C-AGGTG------------
13972 GACAGGTGTTGGTTACTACAGGCTTTGGAAGGTTTGCCACTAAACTTGTGTGGGCTTTTTGGGTG
567 --------TTGGTTACTACAGGCTTTGGAAGGTTTGCCACTAAACTTGTGTGGGCTTTTTGGGTG
14037 CTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAATGGAAAAGGGTGTCCACTTTTCAAGGACAA
624 CTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAATGGAAAAGGGTGTCCACTTTTCAAGGACAA
14102 AGGAAAAGAGGATGAAATGGGTCTTTGCTCCTTGAACGACAAGGAAGAGAAGAAAAGGAAAGTGT
689 AGGAAAAGAGGATGAAATGGGTCTTTGCTCCTTGAACGACAAGGAAGAGAAGAAAAGGAAAGTGT
14167 CCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAAGGAAAAAGGG
754 CCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAAGGAAAAAGGG
* *
14232 AAATGAAATACGTCCTGCTCTTTGAGACAAAGAAAGAGGAAAATAAAGTGT
819 AAATGAAATACGTCCTGCTCTCTAAGACAAAGAAAGAGGAAAATAAAGTGT
14283 ATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAA-GCGTCCTACT-T
1 ATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCT
* *
14346 TT-AGGACTGAAAGGTGCCACCAACGTGTAT-GGATTTAAGAGGTGTCCTGCTCTTTGGGATTGG
66 TTGAGGACTGAAAGGTGCCACCAACGTGGATGGGATTTAAGAGGTGTCCTGCTCTTTGGGACTGG
* *
14409 AAAAATGCC-CCAACTTGTGT-GGCTTTAAATGGTGTCCTGCTCTTTGGGGACTGAAAGGCG-CA
131 -AAAATGCCACCAACTTGTGTGGGCTTTAAA-GGTGTCCTACTCTTTGGGGACTGAAAGGTGCCA
*
14471 CCAACTTTTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGA-T-AAGGTGCCACCAA-
194 CCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGC-CTTTGAGGACTAAAGGTG-CACCAAC
*
14533 CTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCC-TAAACTGTCGAAAATTGGCC
257 CCTCG-CCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAACTGTCGAAAATTGGCC
* *
14597 CGGACAAATGAGGTGTCTGCAGC-TGCCCTCTTTGGCCGTTTCTGAGTTTCAGGAACAGGGC-AA
321 CGG-CAAATGAGGTGTCTGCAGCGTGCCC-CTCTGGCCGTTTC-GAGTATC-GGAACAGGGCAAA
14660 GACAATAGACACCA-TTTATCTG-CGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTT
382 GACAATAGACACCATTTTATCTGCCGG-C-CATGTTGTGACCTTAGAGTGATTAAAC-AGAGGTT
14723 TAATTAAAGCTTCACCATGA-GGAGGGTGTATTGGCGACGGTTCCGATGG-AAAATGAGTTTGTA
444 TAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTA
14786 GGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCCTTAAACCTCCTTAGACAGGTGTTG
509 GGGTTTGTCCCCCCTACTAGGTTTTGAGA-TTTCTAAGG-CTT-AA-CTCCTTAGACAGGTGTTG
14851 GTTACTAC-GGCTTTGGGAA-GTTTGCCACT-AACTTGTGTGGGCTTTTTGGGTGCTGCCAACTT
570 GTTACTACAGGCTTT-GGAAGGTTTGCCACTAAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTT
*
14913 GTGCAAACTTTAGGAGGGAAAAGAAATGGAAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGC
634 GTGCAAACTTTAGGAGGGAAAAG-AATGGAAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGA
14978 GGATGAAAT-GGTC-TTGCTCCTTGAA-GACCAAGGAAGAGAAGAAAAGG-AAGTGTCCTGCTTC
698 GGATGAAATGGGTCTTTGCTCCTTGAACGA-CAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTC
15039 TTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGAC-AAAGGAAAAAGGGAAATGAAA
762 TTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAAGGAAAAAGGGAAATGAAA
15103 TACGTCCTGCTCTCTAAGGACAAAGAAAGAGGAAAATAAAGTGT
827 TACGTCCTGCTCTCTAA-GACAAAGAAAGAGGAAAATAAAGTGT
15147 ATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCT
1 ATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCT
* *
15212 TTGAGGACTGAAAGGTGCCACCAACGTGGCTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTG
66 TTGAGGACTGAAAGGTGCCACCAACGTGGATGGGATTTAAGAGGTGTCCTGCTCTTTG-GGACTG
* * *
15277 GAAAATACCACCAACTTGTGTGGGGTTTAAAAGGTGTCCTATTCTTTGGGGACTGAAAGGTGCCA
130 GAAAATGCCACCAACTTGTGTGGGCTTT-AAAGGTGTCCTACTCTTTGGGGACTGAAAGGTGCCA
15342 CCAACTTGTGTGGGGCTTTGAAA
194 CCAACTTGTGT-GGGCTTTGAAA
15365 GGGGTCCTGC
Statistics
Matches: 1595, Mismatches: 226, Indels: 374
0.73 0.10 0.17
Matches are distributed among these distances:
863 36 0.02
864 137 0.09
865 44 0.03
866 68 0.04
867 95 0.06
868 54 0.03
869 29 0.02
870 60 0.04
871 27 0.02
872 28 0.02
873 38 0.02
874 7 0.00
875 3 0.00
876 6 0.00
877 7 0.00
878 10 0.01
879 10 0.01
880 6 0.00
881 18 0.01
882 73 0.05
883 61 0.04
884 33 0.02
885 1 0.00
887 4 0.00
888 9 0.01
890 6 0.00
891 12 0.01
892 11 0.01
893 9 0.01
894 9 0.01
895 9 0.01
896 8 0.01
898 7 0.00
899 4 0.00
900 2 0.00
901 1 0.00
903 1 0.00
907 2 0.00
908 11 0.01
909 5 0.00
913 1 0.00
914 1 0.00
915 5 0.00
916 29 0.02
917 60 0.04
918 44 0.03
919 189 0.12
920 73 0.05
921 56 0.04
922 37 0.02
923 33 0.02
924 40 0.03
925 22 0.01
926 23 0.01
927 18 0.01
928 3 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (869 bp):
ATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCT
TTGAGGACTGAAAGGTGCCACCAACGTGGATGGGATTTAAGAGGTGTCCTGCTCTTTGGGACTGG
AAAATGCCACCAACTTGTGTGGGCTTTAAAGGTGTCCTACTCTTTGGGGACTGAAAGGTGCCACC
AACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCCTTTGAGGACTAAAGGTGCACCAACCCTC
GCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAACTGTCGAAAATTGGCCCGGCA
AATGAGGTGTCTGCAGCGTGCCCCTCTGGCCGTTTCGAGTATCGGAACAGGGCAAAGACAATAGA
CACCATTTTATCTGCCGGCCATGTTGTGACCTTAGAGTGATTAAACAGAGGTTTAATTAAAGCTT
CACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCCC
CCTACTAGGTTTTGAGATTTCTAAGGCTTAACTCCTTAGACAGGTGTTGGTTACTACAGGCTTTG
GAAGGTTTGCCACTAAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGG
GAAAAGAATGGAAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATGAAATGGGTCTTTG
CTCCTTGAACGACAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAA
GAGTACGTCCCATTTTCCAAGGACAAAAGGAAAAAGGGAAATGAAATACGTCCTGCTCTCTAAGA
CAAAGAAAGAGGAAAATAAAGTGT
Found at i:15246 original size:55 final size:55
Alignment explanation
Indices: 15148--15464 Score: 327
Period size: 55 Copynumber: 5.7 Consensus size: 55
15138 ATAAAGTGTA
* * * * * *
15148 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
15203 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTG-GCTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTG-TGGGCTTTGAA-AGGTG
* * * *
15258 TCCTGCTCTTTGAGGACTGGAAA-ATACCACCAACTTGTGTGGGGTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
** * *
15313 TCCTATTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGT-GGGCTTTGAAAGGTG
* ** **
15369 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCGTAGGAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TTTGAAAG-----GTG
15430 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
15465 CGTCCCCACA
Statistics
Matches: 221, Mismatches: 28, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
54 7 0.03
55 116 0.52
56 63 0.29
60 17 0.08
61 18 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:16271 original size:56 final size:55
Alignment explanation
Indices: 16104--16347 Score: 242
Period size: 56 Copynumber: 4.5 Consensus size: 55
16094 GTAGTAAAAA
* * *
16104 GTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTC-TTGAGGACTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAG
* *
16158 GTGCC-CCAACGTGTGT-GGC-TT-AGA-GTGTCCTGGCTCTTTGAGGACTGGAAA-
1 GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCT-GCTCTTTGAGGACT-GAAAG
*
16209 -TGCCACCAACTTGTGTGGGCTTT-ACAAGGTTGTCCTGCTCTTTGGGGACTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTGA-AAGG-TGTCCTGCTCTTTGAGGACTGAAAG
* * *
16264 GTGCCACCAACTTGTGTGGGCTTTGATGCAATGG-GTCCTTCTCTTTGGGGACTGAAAC
1 GTGCCACCAACTTGTGTGGGCTTTGA---AA-GGTGTCCTGCTCTTTGAGGACTGAAAG
*
16322 TTGCCACCAAC-T-TGTGGGCTTTGAAA
1 GTGCCACCAACTTGTGTGGGCTTTGAAA
16348 AGAAAAAGAT
Statistics
Matches: 164, Mismatches: 11, Indels: 31
0.80 0.05 0.15
Matches are distributed among these distances:
49 6 0.04
50 9 0.05
51 21 0.13
52 10 0.06
53 14 0.09
54 10 0.06
55 14 0.09
56 41 0.25
57 2 0.01
58 32 0.20
59 3 0.02
60 2 0.01
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.29
Consensus pattern (55 bp):
GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAG
Found at i:16366 original size:58 final size:58
Alignment explanation
Indices: 16185--16389 Score: 160
Period size: 58 Copynumber: 3.6 Consensus size: 58
16175 GCTTAGAGTG
* ****
16185 TCCTGGCTCTTTGAGGACTGGAAA--TGCCACCAACTTGTGTGGGCTTT-ACA-AGGTTG-
1 TCCT-GCTCTTTGGGGACT-GAAACGTGCCACCAACTTGTGTGGGCTTTGA-AGAAAAAGA
* * * ** *
16241 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGATGCAATGGG
1 TCCTGCTCTTTGGGGACTGAAACGTGCCACCAACTTGTGTGGGCTTTGAAGAAAAAGA
* *
16299 TCCTTCTCTTTGGGGACTGAAACTTGCCACCAAC-T-TGTGGGCTTTGAAAAGAAAAAGA
1 TCCTGCTCTTTGGGGACTGAAACGTGCCACCAACTTGTGTGGGCTTTG--AAGAAAAAGA
* *
16357 TCCTGCTCTTTGCGGAAT-AAA-GTG-CACCAACTT
1 TCCTGCTCTTTGGGGACTGAAACGTGCCACCAACTT
16390 CATCCCCCAC
Statistics
Matches: 123, Mismatches: 18, Indels: 16
0.78 0.11 0.10
Matches are distributed among these distances:
54 4 0.03
55 20 0.16
56 41 0.33
57 7 0.06
58 51 0.41
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (58 bp):
TCCTGCTCTTTGGGGACTGAAACGTGCCACCAACTTGTGTGGGCTTTGAAGAAAAAGA
Found at i:16656 original size:933 final size:929
Alignment explanation
Indices: 14362--16960 Score: 3922
Period size: 933 Copynumber: 2.8 Consensus size: 929
14352 CTGAAAGGTG
* * * * * **
14362 CCACCAACGTGTAT-GGATTTAAGAGGTGTCCTGCTCTTT-GGGATTGGAAAAATGCC-CCAACT
1 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACT
*
14424 TGTGT-GGCTTT-AAATGGTGTCCTGCTCTTTGGGGACTGAAAGGCGCACCAACTTTTGTGGGCT
65 TGTGTGGGCTTTGAAATGG-GTCCTGCTCTTTGGGGACTGAAATGC-CACCAAC-TTTGTGGGCT
*
14487 TTGAAAAGAAAAAGCATCCTGCTCTTTGAGG-ATAAGGTGCCACCAACTTCGTCCCCACATATAT
127 TTGAAAAGAAAAAGCATCCTGCTCTTTGAGGAATAAAGTGCCACCAACTTCGTCCCCACATATAT
*
14551 CGAATCCTCCACCTACTAGCTAGG-C-CTAAACTGTCGAAAATTGGCCCGGAC-AAATG-AGGTG
192 CGAATCCTCCACCTACTAGCTAGGCCTCTAAATTGTCGAAAATTGGCCCGGACAAAATGAAGGTG
* * *
14612 TCTGCAGCTGCCCTCTTTGGCCGTTTCTGAGTTTCAGGAACAGGGC-AAGACAATAGACACCATT
257 TCTACAGCTCCCCTC-TTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAATAGACACCATT
*
14676 TATCTGCG-GCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCA
321 TATCAGCGCGCCGCATGTTGTGACCTTAGAGTGATTAAAC-AGAGGTTTAATTAAAGCTTCACCA
14740 TGA-GGAGGGTGTATTGGCGACGGTTCC---GATGG-AAAATGAGTTTGTAGGGTTTGTCCCCCC
385 TGATGGAGGGTGTATTGGCGACGGTTCCGATGATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCC
14800 TACTAGGTTTTGAGATTTTCTAAGGCCTTAAACCTCCTTAGACAGGTGTTGGTTACTACGGCTTT
450 TACTAGGTTTTGAGATTTTCTAAGG-CTT--ACCTCCTTAGACA-GTGTTGGTTACTACGGCTTT
14865 GGGAA-GTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAG
511 GGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAG
*
14929 GGAAAAGAAATGGAAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGCGGATGAAATGGTCTTG
576 GGAAAAGAAATGG-AAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATGAAATGGTCTTG
14994 CTCCTTGAAGACCAAGGAAGAGAAGAAAAGG-AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAA
640 CTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAA
*
15058 GAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCTGCTCTCTAAGGA
705 GAGTACGTCCCATTTTCCAAGGA-AAAGGAAAAAGGGAAATGAAATACGTCCAGCTCTCTAAGGA
15123 CAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGT
769 CAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGT
15188 GGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGGCTGGGCTTTAAG
834 GGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGGCTGGGCTTTAAG
15253 AGGTGTCCTGCTCTTTGAGGACTGGAAAATA
899 AGGTGTCCTGCTCTTTGAGGACTGGAAAATA
* **
15284 CCACCAACTTGTGTGGGGTTTAAAAGGTGTCCTATTCTTTGGGGACTGAAAGGTGCCACCAACTT
1 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
* *
15349 GTGTGGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCG
66 GTGT-GGGCTTTGAAATGGGTCCTGCTCTTTGGGGACTGAAA--TGCCACCAACTT-TGTGGGCT
* * *
15414 TAGGAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTCGTCCCCACATATA
127 TTGAAAAGAAAAAGCATCCTGCTCTTTGAGGAATAAA-GTGCCACCAACTTCGTCCCCACATATA
* *
15479 TCGAATCCTCCACCTACTAGCTAGGCCT-TAAATTGTCGAAAATTGACCCGGGCAAAAT-AAGGT
191 TCGAATCCTCCACCTACTAGCTAGGCCTCTAAATTGTCGAAAATTGGCCCGGACAAAATGAAGGT
* *
15542 GTCTACAGCTGCCCCTCTTTGCCGTTTCTGAGTATCAGGAACCGGGCAAAGACAAATAGACACCA
256 GTCTACAGCT-CCCCTCTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGAC-AATAGACACCA
*
15607 TTTATCAGCCAGCGGCCACATGTTGTGACCTTAGAGTGATTAAAAACAGAGG-TTAATTAAAGCT
319 TTTATCAG-C-GC-GCCGCATGTTGTGACCTTAGAGTGATT--AAACAGAGGTTTAATTAAAGCT
15671 TCACCATGATGG-GGGTGTATTGGCGACGGTTCCGAT-A--GAAAAATGAGTTTGTAGGGTTTGT
379 TCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGATGGAAAAATGAGTTTGTAGGGTTTGT
15732 CCCCCCTACTAGGTTTTGGAGA-TTTCTAAGGCTTGACCTCCTTAGACAGTGTTGGTTACTACGG
444 CCCCCCTACTAGGTTTT-GAGATTTTCTAAGGCTT-ACCTCCTTAGACAGTGTTGGTTACTACGG
15796 CTTTGGGAAGGTTTGCCACTAACTTGTGT-GGCTTTTTGGGTGCTGCCAACTTGTGCAAACTTTA
507 CTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAAACTTTA
15860 GGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATGAAATGGGT
572 GGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATGAAAT-GGT
15925 CTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGA-GAC-AAGTGA
636 CTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGA
15988 AAAAGAGTACGTCCCATTTTCCAAGG-AAAGGAAAAAGGTGGAAATG-AATACGTCCAGCTCTCT
701 AAAAGAGTACGTCCCATTTTCCAAGGAAAAGGAAAAA-G-GGAAATGAAATACGTCCAGCTCTCT
*
16051 GAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCA-TGAGGTAGTAAAAAGTGCCACCAAC
764 AAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGG-AGTAAAAAGTGCCACCAAC
16115 TCGTGTGGGCTTTGAAAGGCGTCCTACTC-TTGAGGACTGAAAGGTGCC-CCAACGT-G-TGTGG
828 TCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGGCTG-GG
*
16176 C-TT-AGA-GTGTCCTGGCTCTTTGAGGACTGG-AAATG
892 CTTTAAGAGGTGTCCT-GCTCTTTGAGGACTGGAAAATA
*
16211 CCACCAACTTGTGTGGGCTTTACAAGGTTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACT
1 CCACCAACTTGTGTGGGCTTTAAAAGG-TGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACT
*
16276 TGTGTGGGCTTTGATGCAATGGGTCCTTCTCTTTGGGGACTGAAACTTGCCACCAAC-TTGTGGG
65 TGTGTGGGCTTTGA---AATGGGTCCTGCTCTTTGGGGACTGAAA--TGCCACCAACTTTGTGGG
* *
16340 CTTTGAAAAGAAAAAG-ATCCTGCTCTTTGCGGAATAAAGTG-CACCAACTTCATCCCCCACATA
125 CTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGAATAAAGTGCCACCAACTTCGT-CCCCACATA
16403 TATCGAATCCTCCACCTACTTAGCTAGGCCTCTAAATTGTCGAAAATTGGCCCGGACAAAATGAC
189 TATCGAATCCTCCACCTAC-TAGCTAGGCCTCTAAATTGTCGAAAATTGGCCCGGACAAAATGA-
*
16468 TCAGGTGTCTACAGC-CCCCTCTTGGCCGTTTCTGAGTATCAAGAACAGGGCAAAGACAATAGAC
252 --AGGTGTCTACAGCTCCCCTCTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAATAGAC
16532 ACCATTTTATC-GCGGCCGCCGCATG-T-TGACCTTAGAGTGATTAAACAGAGGTTTAATTAAAG
315 ACCA-TTTATCAGC-G-CGCCGCATGTTGTGACCTTAGAGTGATTAAACAGAGGTTTAATTAAAG
16594 CTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGAAAAATGGAAAAATGAGTTTGTAGG
377 CTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATG----ATGGAAAAATGAGTTTGTAGG
16659 GTTTGT-CCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTACCTCCTTAGACAG-G-TGTGTTAC
438 GTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTACCTCCTTAGACAGTGTTG-GTTAC
* *
16721 TATATGGCTTTGGGAAGGTTTGCCACTAAACTTGTGTGGGCTTTTGGGGTGCTGCCAACTT-TGC
502 --TACGGCTTTGGGAAGGTTTGCCACT-AACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
*
16785 AAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCC-CTTTTCAAGGGACAAA-GAAAAGAGGAT
564 AAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAA-GGACAAAGGAAAAGAGGAT
16848 GAAATTGGTCCTTGCTCCTTG-AGACCAAGGAAGAGAAAGAAAAGGAAAGTGTCCTGCTTCTTGA
628 GAAA-TGGT-CTTGCTCCTTGAAGACCAAGGAAGAG-AAGAAAAGGAAAGTGTCCTGCTTCTTGA
16912 GGACCAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAA
690 GGA-CAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGA-AAAGGAAAA
Statistics
Matches: 1547, Mismatches: 55, Indels: 134
0.89 0.03 0.08
Matches are distributed among these distances:
922 12 0.01
923 29 0.02
924 25 0.02
925 35 0.02
926 102 0.07
927 125 0.08
928 120 0.08
929 73 0.05
930 114 0.07
931 70 0.05
932 149 0.10
933 239 0.15
934 107 0.07
935 120 0.08
936 82 0.05
937 72 0.05
938 64 0.04
939 9 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (929 bp):
CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
GTGTGGGCTTTGAAATGGGTCCTGCTCTTTGGGGACTGAAATGCCACCAACTTTGTGGGCTTTGA
AAAGAAAAAGCATCCTGCTCTTTGAGGAATAAAGTGCCACCAACTTCGTCCCCACATATATCGAA
TCCTCCACCTACTAGCTAGGCCTCTAAATTGTCGAAAATTGGCCCGGACAAAATGAAGGTGTCTA
CAGCTCCCCTCTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAATAGACACCATTTATCA
GCGCGCCGCATGTTGTGACCTTAGAGTGATTAAACAGAGGTTTAATTAAAGCTTCACCATGATGG
AGGGTGTATTGGCGACGGTTCCGATGATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAG
GTTTTGAGATTTTCTAAGGCTTACCTCCTTAGACAGTGTTGGTTACTACGGCTTTGGGAAGGTTT
GCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAA
TGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATGAAATGGTCTTGCTCCTTGAAGA
CCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCC
ATTTTCCAAGGAAAAGGAAAAAGGGAAATGAAATACGTCCAGCTCTCTAAGGACAAAGAAAGAGG
AAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAG
GCGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGGCTGGGCTTTAAGAGGTGTCCTGCT
CTTTGAGGACTGGAAAATA
Done.