genome.fa.s721.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold721
Parameters: 2 7 7 80 10 50 1000
Length:  30994

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3963--4016	19	2.9	17	75	20	54	42	14	14	27	1.85
4118--4162	20	2.2	21	88	4	65	42	20	8	28	1.82
6505--6531	4	6.8	4	100	0	54	77	0	0	22	0.76
8625--8789	51	3.2	51	85	3	215	29	12	28	29	1.93
8772--8845	28	2.6	29	79	12	91	24	22	31	21	1.99
8725--8965	107	2.3	107	84	2	315	31	16	25	26	1.96
8881--8952	28	2.6	27	86	4	90	29	20	27	22	1.99
10045--10092	20	2.4	20	92	0	78	37	20	18	22	1.94
11270--11324	20	2.8	20	85	0	74	45	10	10	32	1.74
11339--11367	12	2.3	13	94	5	51	41	10	17	31	1.83
11350--11405	20	2.8	20	89	2	87	44	12	16	26	1.83
11594--11620	13	2.1	13	100	0	54	29	44	18	7	1.77
12029--12135	53	2.0	53	96	0	196	39	24	13	23	1.90
12222--12267	24	2.0	23	83	12	58	73	0	23	2	0.94
12220--12293	31	2.3	32	83	4	87	71	1	20	6	1.16
12698--12759	31	2.0	31	100	0	124	22	16	22	38	1.92
17074--17100	13	2.1	13	100	0	54	29	14	14	40	1.86
17055--17119	33	2.0	32	87	3	94	30	15	13	40	1.86
17084--17160	20	3.9	20	87	1	111	35	15	16	32	1.91
17205--17235	13	2.4	13	94	0	53	35	16	12	35	1.87
17189--17257	33	2.1	33	83	5	86	36	10	18	34	1.85
22149--27505	472	11.3	471	81	6	5988	36	12	19	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28472--28512	7	5.4	8	94	5	52	4	2	0	92	0.44
28481--28512	1	32.0	1	93	0	55	3	0	0	96	0.20
30813--30874	22	2.9	22	81	9	67	40	4	27	27	1.76
30782--30994	69	3.0	71	79	14	294	37	8	23	30	1.85
30744--30965	69	3.2	69	80	13	308	38	8	23	30	1.84

Tables:   1

The End!