genome.fa.s722.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold722
Parameters: 2 7 7 80 10 50 1000
Length:  111560

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4496--4589	27	3.6	25	75	19	84	24	7	22	45	1.78
18539--18612	16	4.6	16	70	12	62	55	0	1	43	1.08
18539--18636	27	3.4	27	74	17	83	56	0	2	41	1.11
25031--25062	3	10.7	3	100	0	64	31	0	0	68	0.90
30875--30932	27	2.1	27	81	12	66	41	10	5	43	1.61
32688--32721	15	2.3	15	90	5	52	35	14	0	50	1.44
33331--33373	18	2.3	19	80	4	52	41	0	0	58	0.98
33573--33623	19	2.8	19	82	5	61	68	0	0	31	0.90
37785--37841	9	6.1	9	74	8	51	42	0	0	57	0.98
41348--41391	20	2.3	19	84	4	52	61	0	0	38	0.96
43167--43213	2	23.5	2	91	0	76	51	0	4	44	1.21
43167--43219	14	3.8	14	94	0	70	50	0	7	41	1.30
43217--43245	2	14.5	2	100	0	58	51	0	48	0	1.00
44083--44119	2	18.5	2	94	0	65	45	2	51	0	1.15
45363--45395	3	11.0	3	100	0	66	66	0	0	33	0.92
48869--48913	16	2.8	16	75	0	54	17	13	31	37	1.89
52708--52792	20	4.2	18	79	16	71	36	0	1	62	1.03
52712--52773	14	4.1	15	74	17	56	38	0	0	61	0.96
52714--52805	43	2.2	43	80	11	109	38	0	1	60	1.04
52703--52791	24	3.8	23	70	22	62	37	0	1	61	1.03
55893--55920	2	14.0	2	100	0	56	50	0	0	50	1.00
56564--56629	23	2.9	23	76	12	73	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56561--56610	16	3.2	16	73	15	52	58	0	0	42	0.98
56571--56622	9	6.2	9	79	20	51	55	0	0	44	0.99
56571--56629	16	3.9	15	72	17	50	54	0	0	45	0.99
56755--56792	2	19.0	2	94	0	67	47	0	2	50	1.15
60010--60065	2	28.5	2	92	3	96	46	0	1	51	1.11
62567--62593	4	6.8	4	100	0	54	74	0	0	25	0.83
80195--80244	21	2.4	21	82	0	55	50	4	0	46	1.20
80772--80816	21	2.1	22	83	4	56	53	0	4	42	1.21
81288--81421	28	4.6	28	69	12	92	52	0	0	47	1.00
81281--81420	34	4.5	31	68	18	105	52	0	0	47	1.00
81363--81405	17	2.5	17	78	14	52	62	0	0	37	0.95
81371--81420	22	2.3	22	79	6	57	56	0	0	44	0.99
81275--81420	44	3.3	43	72	13	127	52	0	0	47	1.00
82516--82554	18	2.2	18	90	9	62	48	0	0	51	1.00
83254--83318	33	1.9	34	87	3	96	55	1	1	41	1.18
83934--83981	18	2.5	19	75	18	55	31	0	2	66	1.03
84608--84650	16	2.6	17	82	17	63	69	0	2	27	1.00
85452--85508	27	2.2	26	82	11	73	24	12	5	57	1.55
88009--88205	91	2.2	91	94	0	340	40	7	7	44	1.61
88215--88291	36	2.1	39	90	7	124	38	6	9	45	1.62
89327--89386	30	2.0	30	83	6	77	58	0	1	40	1.08
90661--90770	54	2.0	55	86	8	154	47	6	8	38	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90827--90869	21	2.0	22	86	9	61	39	6	2	51	1.42
90974--91015	18	2.5	17	84	7	50	59	2	0	38	1.10
91552--91584	15	2.2	15	89	10	50	81	0	0	18	0.68
98451--98499	23	2.1	23	85	7	64	42	0	2	55	1.11
98475--98520	22	2.3	19	85	11	56	47	0	0	52	1.00
98633--98663	2	15.5	2	100	0	62	51	0	0	48	1.00
101285--101342	8	7.2	8	75	7	55	48	0	0	51	1.00
101284--101341	24	2.5	24	80	11	75	46	0	0	53	1.00
106856--106906	23	2.3	22	80	6	59	47	0	0	52	1.00
107845--107889	4	11.2	4	86	13	58	71	0	0	28	0.87
107849--107959	28	3.8	28	72	12	73	60	0	1	36	1.14
109789--109912	65	1.9	65	89	0	194	23	12	25	39	1.89

Tables:   1

The End!