Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold723

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4513
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37


Found at i:2545 original size:22 final size:24

Alignment explanation


    Indices: 2497--2546  Score: 68
    Period size: 22  Copynumber: 2.2  Consensus size: 24

       2487 TTATTTACTA

                               *    
       2497 AAATTATGATATATTTGTATATTT
          1 AAATTATGATATATTTGTAAATTT

                   *                
       2521 AAATTATTAT-TATTT-TAAATTT
          1 AAATTATGATATATTTGTAAATTT

                
       2543 AAAT
          1 AAAT

       2547 GTGAAATAAG


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  22   10  0.42
  23    5  0.21
  24    9  0.38

ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54


Consensus pattern (24 bp):   
AAATTATGATATATTTGTAAATTT
Done.