genome.fa.s725.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold725
Parameters: 2 7 7 80 10 50 1000
Length:  47247

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7765--7811	15	2.9	16	84	9	60	85	10	2	2	0.78
7776--7811	17	2.2	16	95	5	63	91	8	0	0	0.41
8132--8166	8	4.5	8	89	7	54	91	8	0	0	0.42
8134--8163	1	30.0	1	93	0	51	96	3	0	0	0.21
9246--9314	27	2.5	27	90	2	111	27	37	17	17	1.92
9368--9749	35	11.9	32	73	20	184	20	36	13	29	1.91
9499--9554	27	2.0	28	83	10	71	23	39	17	19	1.92
9368--9682	128	2.5	123	85	9	420	21	36	13	28	1.92
9396--9708	33	9.6	33	70	23	138	21	36	13	29	1.91
9632--9687	28	2.0	28	86	6	78	19	35	16	28	1.93
10160--10437	51	5.7	49	73	19	224	24	28	16	30	1.97
10147--10439	100	3.0	98	77	19	310	24	27	17	30	1.97
10906--10940	17	2.1	17	100	0	70	31	40	0	28	1.57
11455--11521	33	2.0	33	88	0	98	34	11	13	40	1.81
11475--11499	13	1.9	13	100	0	50	36	16	16	32	1.90
11565--11589	13	1.9	13	100	0	50	32	16	16	36	1.90
11598--11718	52	2.3	52	97	0	224	34	18	18	28	1.94
19809--20534	61	11.3	63	76	15	563	20	35	13	29	1.92
19931--20009	27	2.9	27	98	0	149	24	40	17	17	1.91
19774--20573	34	24.9	33	78	14	559	20	34	13	31	1.92
19803--20439	95	6.6	97	79	15	488	20	36	13	29	1.91
19809--20439	129	4.9	129	88	5	751	20	36	13	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20408--20461	27	2.0	27	92	0	90	22	37	14	25	1.93
19839--20541	95	7.3	97	78	13	390	20	35	13	30	1.91
20437--20573	73	1.9	72	86	5	197	18	29	12	39	1.87
20442--20593	73	2.1	71	81	6	173	19	32	11	35	1.88
20578--20647	33	2.1	35	94	5	126	25	37	17	20	1.94
20647--21207	49	11.6	49	81	8	661	25	26	17	31	1.97
20642--21208	98	5.9	98	93	2	834	25	26	17	31	1.97
20828--21337	49	9.8	55	80	8	351	24	25	16	33	1.96
21595--21629	17	2.1	17	100	0	70	31	40	0	28	1.57
22152--22218	33	2.0	33	88	0	98	34	11	13	40	1.81
22172--22196	13	1.9	13	100	0	50	36	16	16	32	1.90
22261--22402	52	2.7	52	90	4	225	33	18	17	30	1.94
27956--28138	52	3.5	52	95	0	303	30	16	18	34	1.93
28147--28171	13	1.9	13	100	0	50	36	16	16	32	1.90
28235--28259	13	1.9	13	100	0	50	32	16	16	36	1.90
30074--30140	33	2.0	33	86	11	93	31	17	14	35	1.91
30191--30216	13	2.0	13	100	0	52	38	15	15	30	1.88
30199--30236	20	1.9	20	88	0	58	42	18	7	31	1.79
30170--30237	33	2.0	34	86	8	95	36	17	11	33	1.86
30074--30298	97	2.3	97	93	0	380	32	16	16	34	1.91
30307--30333	13	2.1	13	100	0	54	40	14	14	29	1.86
31696--32177	165	2.9	163	81	7	492	48	8	10	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31724--32262	165	3.3	164	79	7	441	48	9	10	31	1.69
35025--35101	22	3.5	22	83	0	100	35	6	14	44	1.71
35547--35595	22	2.2	22	82	7	55	32	8	14	44	1.74
37467--37508	21	2.0	21	86	9	59	38	33	7	21	1.81
41697--41735	16	2.5	16	91	4	62	28	2	48	20	1.62
43027--43083	23	2.2	26	82	17	66	50	5	0	43	1.24
43122--43164	21	2.1	20	86	4	59	44	6	0	48	1.29
43727--43785	25	2.4	24	80	8	73	44	0	6	49	1.29
43772--43812	14	2.9	14	89	10	57	39	0	0	60	0.96
43804--43842	19	2.1	19	90	4	62	53	0	0	46	1.00
44466--44529	21	3.1	20	77	6	65	50	14	7	28	1.70
44865--44924	19	3.1	19	75	11	59	43	0	0	56	0.99
44837--44924	40	2.2	41	82	10	101	42	0	2	55	1.12
45031--45067	19	1.9	19	88	0	56	64	2	2	29	1.21

Tables:   1

The End!