genome.fa.s733.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold733
Parameters: 2 7 7 80 10 50 1000
Length:  57991

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3936--3987	20	2.7	19	85	8	70	30	17	9	42	1.81
4357--4400	22	2.1	21	87	8	63	45	9	9	36	1.68
4611--4645	13	2.7	13	81	0	52	31	14	17	37	1.89
4695--4731	20	1.9	20	88	5	58	35	10	18	35	1.86
5094--5325	36	6.9	35	75	10	216	34	12	23	29	1.92
5094--5321	68	3.4	68	86	2	327	33	12	23	29	1.92
6919--6978	21	2.9	21	72	22	63	50	1	28	20	1.58
9191--9596	79	5.2	81	78	8	340	33	13	23	28	1.93
12592--12729	34	3.9	34	75	15	107	42	16	20	21	1.90
12570--12728	75	2.1	75	81	4	178	44	14	23	18	1.86
12592--12729	35	3.9	34	75	11	132	42	16	20	21	1.90
12703--13013	41	7.4	41	83	4	309	40	13	23	22	1.89
12998--13635	61	10.4	61	82	6	625	30	19	24	25	1.98
13067--13635	61	9.3	60	83	4	626	30	19	25	25	1.98
14904--14979	12	6.5	11	73	18	55	6	10	5	77	1.11
18017--18046	14	2.1	14	100	0	60	30	6	13	50	1.67
18042--18080	13	3.0	13	92	0	69	35	17	15	30	1.91
18124--18260	53	2.6	53	95	1	247	27	17	18	37	1.93
18340--18380	21	2.0	21	85	9	57	39	9	12	39	1.76
21193--21311	51	2.4	51	88	1	177	33	11	24	30	1.91
21245--21559	79	4.0	78	82	6	377	33	11	25	29	1.91
21243--21543	156	1.9	158	83	6	398	31	11	26	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21833--21857	13	1.9	13	100	0	50	36	16	16	32	1.90
21813--21878	32	2.0	33	88	2	98	33	12	15	39	1.84
21919--21943	13	1.9	13	100	0	50	32	16	16	36	1.90
28819--28882	10	6.1	10	82	10	74	87	12	0	0	0.54
28821--28878	8	6.9	8	88	7	80	87	12	0	0	0.53
28820--28879	9	6.9	9	88	11	90	88	11	0	0	0.52
28818--28882	26	2.5	26	89	2	103	87	12	0	0	0.54
28822--28890	9	7.7	9	85	9	79	85	13	1	0	0.66
28818--28880	1	63.0	1	77	0	63	88	11	0	0	0.50
29132--29184	17	3.6	16	73	23	53	79	5	15	0	0.91
29130--29186	27	2.1	26	90	9	87	80	5	14	0	0.87
30252--30402	27	5.2	27	78	12	140	19	35	13	31	1.91
30193--30701	61	7.9	61	78	13	386	18	34	13	33	1.90
30192--30737	33	16.7	33	78	11	484	18	33	13	34	1.90
30369--30732	100	3.6	100	92	1	568	19	33	13	33	1.90
30743--30901	33	4.9	32	89	3	219	28	32	18	19	1.96
30739--30901	65	2.5	66	90	4	242	28	33	18	19	1.95
30908--31572	49	14.3	49	82	11	844	25	25	18	30	1.98
30908--31554	43	14.0	44	80	12	696	25	25	18	30	1.98
30908--31554	92	7.0	92	92	3	1036	25	25	18	30	1.98
31253--31320	21	3.2	21	63	19	50	25	26	17	30	1.97
31487--31554	21	3.2	21	62	25	52	25	29	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32289--32313	13	1.9	13	100	0	50	36	16	16	32	1.90
32375--32399	13	1.9	13	100	0	50	32	16	16	36	1.90
32408--32532	52	2.4	52	93	0	214	36	18	16	28	1.93
37441--38026	290	2.0	290	90	0	929	25	18	20	35	1.95
38280--38414	50	2.7	50	81	4	139	42	13	16	28	1.85
38719--38759	13	3.2	13	82	0	55	36	12	9	41	1.76
39627--39652	13	2.0	13	100	0	52	30	15	15	38	1.88
39691--39767	21	3.8	20	78	3	91	28	15	11	44	1.82
39712--39784	20	3.6	20	81	3	101	31	17	13	36	1.89
39691--39784	41	2.3	41	96	0	170	29	17	12	40	1.86
42230--42268	13	3.0	13	96	0	69	35	15	17	30	1.91
44348--44378	15	2.1	15	93	0	53	12	22	16	48	1.80
48439--48464	13	2.0	13	100	0	52	30	15	15	38	1.88
48503--48579	21	3.8	20	78	3	91	28	15	11	44	1.82
48524--48596	20	3.6	20	81	3	101	31	17	13	36	1.89
48503--48596	41	2.3	41	96	0	170	29	17	12	40	1.86
49465--49614	66	2.3	66	92	2	257	30	8	9	52	1.62
49780--49818	21	1.9	21	89	5	62	38	2	28	30	1.70
50571--50614	22	2.1	21	91	8	72	45	6	9	38	1.63
50731--50755	13	1.9	13	100	0	50	32	16	16	36	1.90
50710--50773	32	2.0	33	93	3	112	29	15	15	39	1.89
51290--51522	36	6.9	34	76	13	207	32	10	26	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51299--51518	68	3.3	67	87	3	291	32	10	25	31	1.90
55116--55153	20	1.9	20	94	0	67	31	13	13	42	1.82
55207--55232	13	2.0	13	100	0	52	30	15	15	38	1.88
55819--55877	23	2.6	23	86	5	84	30	23	8	37	1.85
56813--56846	17	2.0	17	88	0	50	44	0	8	47	1.34

Tables:   1

The End!