genome.fa.s734.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold734
Parameters: 2 7 7 80 10 50 1000
Length:  82603

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8299--8354	18	3.1	18	79	7	51	42	0	1	55	1.10
8317--8502	97	1.9	95	88	6	277	52	8	1	37	1.39
11132--11172	5	8.2	5	97	0	55	0	53	0	46	1.00
11129--11172	15	2.9	15	89	0	61	0	50	0	50	1.00
16534--16567	17	2.0	17	100	0	68	23	0	35	41	1.55
24690--24727	19	2.1	18	90	5	58	18	0	18	63	1.32
25467--25530	20	3.5	20	72	27	79	35	17	12	34	1.87
25465--25514	13	4.3	13	72	27	58	38	18	12	32	1.87
25463--25548	33	2.5	34	92	5	147	36	18	13	31	1.90
25581--25632	19	2.7	19	78	3	59	36	15	17	30	1.91
25617--25643	13	2.1	13	100	0	54	40	14	14	29	1.86
26558--26624	33	2.0	33	82	0	80	26	14	29	28	1.96
27929--27975	19	2.3	21	71	10	53	38	0	23	38	1.55
27958--28008	10	4.9	10	77	15	50	50	0	17	31	1.46
37696--37788	36	2.7	34	82	11	111	31	23	12	32	1.92
38219--38256	20	1.9	20	100	0	76	36	21	10	31	1.87
38222--38268	20	2.3	20	88	0	67	36	19	8	36	1.82
38492--38532	20	2.0	21	90	9	66	39	7	7	46	1.60
40143--40190	19	2.5	19	100	0	96	39	6	12	41	1.68
40162--40227	33	2.0	32	85	8	89	37	9	13	39	1.77
41311--41340	13	2.3	13	94	0	51	33	13	20	33	1.91
41290--41356	33	2.0	33	88	5	100	32	19	14	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42296--42347	25	2.1	25	100	0	104	48	15	3	32	1.63
45381--45420	16	2.5	16	87	0	62	37	10	0	52	1.35
48029--48074	22	2.0	22	83	8	56	19	10	15	54	1.70
48525--48555	3	10.3	3	92	0	53	29	32	0	38	1.57
50159--50211	20	2.7	20	81	0	61	35	18	9	35	1.84
50240--50292	19	2.7	20	94	2	90	37	16	15	30	1.90
53186--53237	21	2.4	21	81	12	61	15	25	1	57	1.48
54801--54884	36	2.5	32	76	14	89	28	23	14	33	1.94
55315--55369	20	2.8	20	91	0	83	36	20	9	34	1.84
55429--55490	33	1.9	33	87	9	92	38	12	16	32	1.86
55429--55490	32	1.9	32	87	9	90	38	12	16	32	1.86
64792--64919	52	2.5	52	94	3	224	30	17	17	33	1.94
64928--64952	13	1.9	13	100	0	50	36	16	16	32	1.90
64993--65059	33	2.0	33	88	0	98	40	13	11	34	1.81
65015--65039	13	1.9	13	100	0	50	32	16	16	36	1.90
65851--66710	49	17.9	49	83	8	1113	31	17	25	25	1.97
65850--66715	98	9.1	93	93	4	1283	31	17	25	25	1.97
65848--66715	190	4.5	186	91	5	1305	31	17	25	25	1.97
66710--66848	33	4.2	33	86	4	201	17	16	36	28	1.92
66715--66844	65	2.0	66	93	1	226	16	17	35	30	1.93
66850--67478	33	18.8	33	91	5	851	31	13	35	19	1.90
66850--67481	100	6.3	100	90	4	879	31	13	35	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68432--68462	16	1.9	16	93	0	53	0	6	6	87	0.68
72570--72777	97	2.2	97	80	6	226	36	12	23	27	1.90
74956--75018	21	3.0	21	72	4	65	33	19	17	30	1.95
76526--76603	22	3.3	23	75	10	68	39	2	3	53	1.33
78782--78825	16	2.7	16	89	3	61	34	9	11	45	1.72
78846--78903	17	3.5	16	81	13	64	43	6	12	37	1.69
78848--78917	17	4.2	16	78	14	61	42	7	11	38	1.68
78780--78912	33	3.9	34	69	18	96	39	9	12	39	1.74
80030--80064	15	2.3	15	95	0	61	14	0	11	74	1.08

Tables:   1

The End!