genome.fa.s738.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold738
Parameters: 2 7 7 80 10 50 1000
Length:  92774

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635--684	22	2.2	23	78	3	57	52	6	2	40	1.38
825--855	2	15.5	2	100	0	62	51	0	0	48	1.00
1225--1257	11	3.1	11	86	8	50	0	12	0	87	0.53
2504--3006	32	15.8	32	93	2	800	15	18	34	31	1.92
2504--3006	63	7.9	64	93	1	800	15	18	34	31	1.92
2512--2985	95	5.0	96	94	1	803	14	18	34	31	1.92
2985--3617	27	23.2	27	90	2	971	28	13	34	23	1.93
4667--4692	13	2.0	13	100	0	52	0	0	15	84	0.62
4937--4985	22	2.2	23	85	7	66	6	12	6	75	1.17
11441--11476	17	2.1	17	89	0	54	0	16	0	83	0.65
13707--13772	22	3.1	21	79	12	73	59	0	0	40	0.98
14402--14657	129	2.0	129	98	0	494	35	14	15	34	1.89
14879--14950	14	5.1	14	77	9	74	23	19	9	47	1.79
27232--27495	130	2.0	130	94	0	465	42	12	22	22	1.87
29359--30046	42	16.4	42	70	10	191	17	28	18	35	1.94
29314--30046	84	8.8	84	76	6	506	18	28	18	35	1.94
29314--30059	168	4.5	167	78	4	639	17	27	18	35	1.94
29477--30049	126	4.6	125	76	9	411	18	28	18	35	1.94
30578--30647	4	17.0	4	72	16	54	72	0	4	22	1.01
30707--30772	29	2.3	29	89	5	98	24	19	10	45	1.82
30693--30794	14	7.1	14	67	12	55	25	19	8	46	1.79
31311--31389	39	2.0	40	82	7	99	49	26	15	8	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34024--34067	23	1.9	23	86	9	63	31	0	6	61	1.22
34064--34126	27	2.3	28	76	13	69	28	1	9	60	1.37
35226--35280	21	2.7	21	88	8	78	34	10	16	38	1.84
35292--36035	371	2.0	370	98	0	1425	37	17	13	30	1.89
42211--42242	2	16.0	2	100	0	64	50	50	0	0	1.00
44259--44309	21	2.5	21	87	3	68	39	13	15	31	1.87
44346--44370	2	12.5	2	100	0	50	52	48	0	0	1.00
48264--48476	115	1.9	115	88	5	324	42	3	1	52	1.28
48466--48503	20	2.0	20	89	5	60	34	0	0	65	0.93
48357--48603	128	2.0	126	83	7	315	41	2	1	54	1.23
49159--49205	24	2.1	24	84	11	64	44	0	2	53	1.12
49175--49250	19	3.9	19	74	15	59	55	0	0	44	0.99
49206--49279	19	3.9	17	72	19	58	56	1	0	41	1.07
49221--49286	20	3.3	20	76	17	66	56	1	0	42	1.08
49632--49693	24	2.5	24	82	10	72	40	0	1	58	1.08
49664--49697	14	2.5	14	90	4	52	41	0	0	58	0.98
49647--49704	30	2.0	29	83	10	73	44	0	0	55	0.99
49658--49743	13	6.0	14	68	18	52	44	1	1	53	1.15
58734--58766	2	16.5	2	100	0	66	48	0	0	51	1.00
62603--62691	16	5.6	16	73	0	88	12	13	31	42	1.81
62598--62709	16	7.0	16	71	4	73	12	14	30	42	1.82
63760--63869	16	6.9	16	75	12	75	15	14	30	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63760--63871	32	3.5	32	77	9	120	15	15	30	39	1.88
66856--66926	4	17.8	4	74	11	65	1	25	0	73	0.92
66860--66934	27	2.7	28	81	8	91	1	24	0	74	0.89
67491--67534	23	1.9	23	85	0	61	52	6	0	40	1.28
67899--68063	36	4.6	36	95	1	287	20	19	26	33	1.96
68640--68689	25	2.0	25	100	0	100	56	8	0	36	1.29
69508--69552	6	7.8	6	85	11	51	0	13	2	84	0.72
71938--71970	16	2.0	17	94	5	59	39	0	0	60	0.97
73114--73187	30	2.5	30	95	0	130	17	8	29	44	1.77
73174--73258	33	2.6	33	92	3	136	16	22	23	37	1.93
75774--75822	13	4.2	12	76	12	57	10	24	0	65	1.23
76568--76622	22	2.5	23	82	8	69	60	1	1	36	1.18
76786--76894	44	2.4	45	90	1	166	14	12	30	42	1.83
77003--77103	30	3.4	30	94	0	166	17	10	29	41	1.84
77099--77183	33	2.6	33	96	0	152	15	24	23	36	1.93
80843--80918	30	2.5	30	87	4	91	25	22	23	28	1.99
80867--80971	30	3.5	30	84	2	113	21	19	21	37	1.95
82181--82579	133	3.0	133	89	1	561	32	16	10	40	1.82
84091--84136	13	3.5	13	85	8	58	54	0	2	43	1.12
86731--86782	19	2.6	21	80	20	67	36	0	0	63	0.95
86760--86792	14	2.2	16	89	10	52	36	0	0	63	0.95

Tables:   1

The End!