Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold742
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 136388
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:7161 original size:9 final size:10
Alignment explanation
Indices: 7146--7174 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
7136 AGTAAAAACC
7146 CACAAAAAAA
1 CACAAAAAAA
7156 CA-AAAAAAA
1 CACAAAAAAA
7165 CACAAAAAAA
1 CACAAAAAAA
7175 GAGAGTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (10 bp):
CACAAAAAAA
Found at i:8507 original size:31 final size:31
Alignment explanation
Indices: 8448--8508 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
8438 TCTTCAAATC
* *
8448 TCTCTTCTCAAAGTCCACGACTTAGTGGCAA
1 TCTCTTCTCAAAGTCCACAACTCAGTGGCAA
*
8479 TCTCTTCTCAAAGTCCACAACTCCGTGGCA
1 TCTCTTCTCAAAGTCCACAACTCAGTGGCA
8509 CCTTTCCCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.28
Consensus pattern (31 bp):
TCTCTTCTCAAAGTCCACAACTCAGTGGCAA
Found at i:8573 original size:34 final size:34
Alignment explanation
Indices: 8493--8880 Score: 333
Period size: 34 Copynumber: 11.5 Consensus size: 34
8483 TTCTCAAAGT
* ** *
8493 CCACAACTCCGTGGCAC-CTTTCCCCTTTTAAGT
1 CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGC
* * *
8526 CCACAACTCCGTGGTACT-TTTTTCTTTTTAAAGC
1 CCACAACTTCGTGGCACTCTTTTTCCTTTT-AAGC
*
8560 CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGT
1 CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGC
* *
8594 CCACAACTTCGTGGTA-TCTTTTTCTTTTTAAAGC
1 CCACAACTTCGTGGCACTCTTTTTCCTTTT-AAGC
* *
8628 CCACAACTTCGTAGCACTCTTTTCCCTTTTAAGC
1 CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGC
* * * * * *
8662 TCACACCTCCATGGCACCCTTTTCCCTTTTAAGC
1 CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGC
* * * *
8696 CCATAACTCCGTGGTAC-CTTTTTCTTTTTAAAGC
1 CCACAACTTCGTGGCACTCTTTTTCCTTTT-AAGC
*
8730 CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGT
1 CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGC
* * *
8764 CCATAACTCCGTGGCAC-C-TTTT-CTGTTTAAGT
1 CCACAACTTCGTGGCACTCTTTTTCCT-TTTAAGC
* * * * * *
8796 CCACGACTCCGTGGCACCCTTTTCCCCTTTAGGC
1 CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGC
* * * * *
8830 CCACACCTCCATGGCATCCCTTTTTCC-TTTAAGT
1 CCACAACTTCGTGGCA-CTCTTTTTCCTTTTAAGC
*
8864 CCACAACTCCGTGGCAC
1 CCACAACTTCGTGGCAC
8881 CATTAAGTCT
Statistics
Matches: 293, Mismatches: 50, Indels: 24
0.80 0.14 0.07
Matches are distributed among these distances:
31 2 0.01
32 26 0.09
33 49 0.17
34 174 0.59
35 42 0.14
ACGTcount: A:0.19, C:0.34, G:0.12, T:0.36
Consensus pattern (34 bp):
CCACAACTTCGTGGCACTCTTTTTCCTTTTAAGC
Found at i:8957 original size:49 final size:49
Alignment explanation
Indices: 8895--9669 Score: 488
Period size: 49 Copynumber: 16.5 Consensus size: 49
8885 AAGTCTAATA
*
8895 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
* * * *
8944 TCGCTGGCGTTGAATCAGCATATTGGCA-C-----CTTTAAGTCCAATA
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
* * * * * *
8987 TCGCTGGCGTTGAATCAGCATATTGGCACCTTTACCATCTTGAGTCCAATA
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATC-T-TTAAGACCAATG
* * * *
9038 TCGCTGGCCTTTAATCAGCATATTGGCA-CATTGTCTTTAAGACCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
* * * * *
9086 TCGTTGGCCTTAAATTAGCACATTGG---C---A-C---AAGTCCAATA
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
* * * * * *
9125 TTGCTAGCCTTGAATCAGCATATTAGCACC-TTGTCTCTAAGACCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
* * *
9173 TCGCTGGCCTTAAATCAACACATTGG---C---A----TAAG-CACAATA
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGAC-CAATG
* * *
9212 TCACTGGCCTTGAATCAGCATATTGGCACC-TTGTCTTTAAGACCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
* *
9260 TCGTTGGCCTTGAATCAGCACATTGG---C---A-C---AAGCCCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
* * * * *
9299 TCGTTGGCCTTGAATCAGCAAATTGGCACCTTCATCTTTAAGATCGATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
* * *
9348 TCGTTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTTAAGTCCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTT---TATCTTTAAGACCAATG
* * * * * ** * *
9400 TCG-TCGACCTTGAATCAACACATTGGCATCTTCATCTGTAACTCCGATA
1 TCGCT-GGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
* *
9449 TCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCTTTAAGACCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
* * * * *
9498 TCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCGATA
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
* * * * * *
9547 TCGTTGGCCTAGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATC-TT--TAAGACCAATG
* * ** * *
9599 TCGCTAGCCTCGTCTCAACACATTGGCA--TTCT-TCTTTAA-ATCTAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTT-TATCTTTAAGA-CCAATG
*
9646 TCGCTGGCCATGAATCAGCACATT
1 TCGCTGGCCTTGAATCAGCACATT
9670 ATCATTCTTC
Statistics
Matches: 577, Mismatches: 101, Indels: 98
0.74 0.13 0.13
Matches are distributed among these distances:
38 1 0.00
39 91 0.16
42 5 0.01
43 40 0.07
44 1 0.00
45 4 0.01
46 2 0.00
47 26 0.05
48 91 0.16
49 196 0.34
50 11 0.02
51 39 0.07
52 70 0.12
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (49 bp):
TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGACCAATG
Found at i:9175 original size:87 final size:87
Alignment explanation
Indices: 9029--9376 Score: 491
Period size: 87 Copynumber: 4.0 Consensus size: 87
9019 TACCATCTTG
* *
9029 AGTCCAATATCGCTGGCCTTTAATCAGCATATTGGCACATTGTCTTTAAGACCAATGTCGTTGGC
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGGC
*
9094 CTTAAATTAGCACATTGGCACA
66 CTTAAATCAGCACATTGGCACA
* * * * *
9116 AGTCCAATATTGCTAGCCTTGAATCAGCATATTAGCACCTTGTCTCTAAGACCAATGTCGCTGGC
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGGC
* *
9181 CTTAAATCAACACATTGGCATA
66 CTTAAATCAGCACATTGGCACA
*
9203 AG-CACAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGG
1 AGTC-CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGG
*
9267 CCTTGAATCAGCACATTGGCACA
65 CCTTAAATCAGCACATTGGCACA
* * * * * * *
9290 AGCCCAATGTCGTTGGCCTTGAATCAGCAAATTGGCACCTTCATCTTTAAGATCGATGTCGTTGG
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTCGTTGG
*
9355 CCTTGAATCAGCACATTGGCAC
65 CCTTAAATCAGCACATTGGCAC
9377 CTTAACCATC
Statistics
Matches: 232, Mismatches: 26, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
86 1 0.00
87 188 0.81
88 43 0.19
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (87 bp):
AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGGC
CTTAAATCAGCACATTGGCACA
Found at i:9468 original size:101 final size:99
Alignment explanation
Indices: 9306--9669 Score: 380
Period size: 101 Copynumber: 3.7 Consensus size: 99
9296 ATGTCGTTGG
* * * * *
9306 CCTTGAATCAGCAAATTGGCACCTTCATCTTTAAGAT-CGATGTCGTTGGCCTTGAATCAGCACA
1 CCTTGAATCAACACATTGGCATCTTCATCTTTAA-ATCCGATATCGCTGGCCTTGAATCAGCACA
*
9370 TTGGCACCTTAACCATCTTTAAGTCCAATGTCGTCGA
65 TTGGCACCTTAA-CATCTTTAAGACCAATGTCG-CGA
* *
9407 CCTTGAATCAACACATTGGCATCTTCATCTGTAACTCCGATATCGCTGGCCTTGAATCAGCACAT
1 CCTTGAATCAACACATTGGCATCTTCATCTTTAAATCCGATATCGCTGGCCTTGAATCAGCACAT
* *
9472 TGGCACCGT--CATCTTTAAGACCAATGTCGCTGG
66 TGGCACCTTAACATCTTTAAGACCAATGTCGC-GA
* * * * *
9505 CCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCGATATCGTTGGCCTAGAATCAGCATAT
1 CCTTGAATCAACACATTGGCATCTTCATCTTTAAATCCGATATCGCTGGCCTTGAATCAGCACAT
* * * *
9570 TGGCATCTTTAACAT-TCCTAAGCCCAATGTCGCTA
66 TGGCA-CCTTAACATCT-TTAAGACCAATGTCGCGA
* ** * ** * *
9605 GCCTCGTCTCAACACATTGGCA--TTCTTCTTTAAATCTAATGTCGCTGGCCATGAATCAGCACA
1 -CCTTGAATCAACACATTGGCATCTTCATCTTTAAATCCGATATCGCTGGCCTTGAATCAGCACA
9668 TT
65 TT
9670 ATCATTCTTC
Statistics
Matches: 221, Mismatches: 35, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
97 1 0.00
98 84 0.38
99 36 0.16
100 2 0.01
101 98 0.44
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (99 bp):
CCTTGAATCAACACATTGGCATCTTCATCTTTAAATCCGATATCGCTGGCCTTGAATCAGCACAT
TGGCACCTTAACATCTTTAAGACCAATGTCGCGA
Found at i:9599 original size:199 final size:197
Alignment explanation
Indices: 9293--9669 Score: 494
Period size: 199 Copynumber: 1.9 Consensus size: 197
9283 TGGCACAAGC
* *
9293 CCAATGTCGTTGGCCTTGAATCAGCAAATTGGCACCTTCATCTTTAAGATCGATGTCGTTGGCCT
1 CCAATGTCGCTGGCCTTGAATCAGCAAATTGGCACCTTCATCTTTAAGATCGATATCGTTGGCCT
* * * *
9358 TGAATCAGCACATTGGCACCTTAACCATCTTTAAGTCCAATGTCGTCGA-CCTTGAATCAACACA
66 AGAATCAGCACATTGGCACCTTAACCATCTCTAAGCCCAATGTCG-CGAGCCTCGAATCAACACA
* * *
9422 TTGGCA-TCTTCATCTGTAACTCCGATATCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCT
130 TTGGCATTCTTC-T-T-TAAATCCAATATCGCTGGCCATGAATCAGCACATTGGCACCGTCATCT
9486 TTAAGA
192 TTAAGA
* *
9492 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAG-TCCGATATCGTTGGCC
1 CCAATGTCGCTGGCCTTGAATCAGCAAATTGGCACCTTCATCTTTAAGAT-CGATATCGTTGGCC
* * * **
9556 TAGAATCAGCATATTGGCATCTTTAA-CAT-TCCTAAGCCCAATGTCGCTAGCCTCGTCTCAACA
65 TAGAATCAGCACATTGGCA-CCTTAACCATCT-CTAAGCCCAATGTCGCGAGCCTCGAATCAACA
* *
9619 CATTGGCATTCTTCTTTAAATCTAATGTCGCTGGCCATGAATCAGCACATT
128 CATTGGCATTCTTCTTTAAATCCAATATCGCTGGCCATGAATCAGCACATT
9670 ATCATTCTTC
Statistics
Matches: 155, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
197 30 0.19
198 5 0.03
199 110 0.71
200 10 0.06
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.31
Consensus pattern (197 bp):
CCAATGTCGCTGGCCTTGAATCAGCAAATTGGCACCTTCATCTTTAAGATCGATATCGTTGGCCT
AGAATCAGCACATTGGCACCTTAACCATCTCTAAGCCCAATGTCGCGAGCCTCGAATCAACACAT
TGGCATTCTTCTTTAAATCCAATATCGCTGGCCATGAATCAGCACATTGGCACCGTCATCTTTAA
GA
Found at i:14423 original size:13 final size:13
Alignment explanation
Indices: 14405--14430 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14395 TACACCAAGT
14405 ATGTATCGATACA
1 ATGTATCGATACA
14418 ATGTATCGATACA
1 ATGTATCGATACA
14431 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:14428 original size:32 final size:33
Alignment explanation
Indices: 14387--14450 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
14377 TAGCCAAACT
* **
14387 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
14419 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
14451 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:16678 original size:21 final size:21
Alignment explanation
Indices: 16645--16689 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
16635 TTGCAAGATG
*
16645 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
16667 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
16687 AAA
1 AAA
16690 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:18511 original size:15 final size:15
Alignment explanation
Indices: 18491--18521 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
18481 TAAAAATGTC
*
18491 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
18506 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
18521 C
1 C
18522 TAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:20618 original size:13 final size:13
Alignment explanation
Indices: 20600--20638 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
20590 ACATTTTTCC
*
20600 TTGTATCGATATA
1 TTGTATCGATACA
20613 TTGTATCGATACA
1 TTGTATCGATACA
*
20626 TTATATCGATACA
1 TTGTATCGATACA
20639 GGGTGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:20802 original size:20 final size:20
Alignment explanation
Indices: 20759--20804 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
20749 AAATCTTTTG
20759 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
20780 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
20800 CAAAA
1 CAAAA
20805 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:25770 original size:20 final size:20
Alignment explanation
Indices: 25745--25783 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
25735 ATTTACCTAC
25745 ATGTATCGATACATTTGGGA
1 ATGTATCGATACATTTGGGA
*
25765 ATGTATCGATATATTTGGG
1 ATGTATCGATACATTTGGG
25784 TCAAAAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTTGGGA
Found at i:26488 original size:18 final size:18
Alignment explanation
Indices: 26461--26495 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26451 TTGTTATAAT
26461 AATTAATTTTATATTTAA
1 AATTAATTTTATATTTAA
* *
26479 AATTATTTTTATTTTTA
1 AATTAATTTTATATTTA
26496 CTATAATTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
AATTAATTTTATATTTAA
Found at i:27140 original size:21 final size:22
Alignment explanation
Indices: 27103--27155 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
27093 CAAATTACAT
27103 TTAAATAAAATATTTTATCGAA
1 TTAAATAAAATATTTTATCGAA
* *
27125 TTAAATTAAA-ATTTTATTGAA
1 TTAAATAAAATATTTTATCGAA
*
27146 ATAAA-AAAAT
1 TTAAATAAAAT
27156 TAAATAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 3 0.12
21 14 0.54
22 9 0.35
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.40
Consensus pattern (22 bp):
TTAAATAAAATATTTTATCGAA
Found at i:30300 original size:16 final size:16
Alignment explanation
Indices: 30258--30331 Score: 53
Period size: 16 Copynumber: 4.6 Consensus size: 16
30248 ATCGATCCGA
* *
30258 AACCTGAAATAACTCG
1 AACCCGAAATGACTCG
* *
30274 AACCCAAAATGACTTG
1 AACCCGAAATGACTCG
*
30290 AACCCGAAATGA-TCCA
1 AACCCGAAATGACT-CG
* *
30306 AACTCAAAATGA-TCCG
1 AACCCGAAATGACT-CG
30322 AACCCGAAAT
1 AACCCGAAAT
30332 AACCTAGATA
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
15 1 0.02
16 44 0.98
ACGTcount: A:0.45, C:0.27, G:0.12, T:0.16
Consensus pattern (16 bp):
AACCCGAAATGACTCG
Found at i:31175 original size:16 final size:16
Alignment explanation
Indices: 31154--31220 Score: 71
Period size: 16 Copynumber: 4.1 Consensus size: 16
31144 AATCCGATTA
* *
31154 ACCCAAATCTGAAATG
1 ACCCAAACCCGAAATG
31170 ACCCAAACCCGAAATG
1 ACCCAAACCCGAAATG
* * *
31186 ATCCGAACCCGAAATA
1 ACCCAAACCCGAAATG
*
31202 ACCCGAACCCGAAAATG
1 ACCCAAACCCG-AAATG
31219 AC
1 AC
31221 TCGAAAATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
16 37 0.86
17 6 0.14
ACGTcount: A:0.43, C:0.33, G:0.13, T:0.10
Consensus pattern (16 bp):
ACCCAAACCCGAAATG
Found at i:31272 original size:15 final size:15
Alignment explanation
Indices: 31234--31272 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
31224 AAAATTTTAA
31234 AACTCAAAATGACAC
1 AACTCAAAATGACAC
*
31249 AAC-CTAAAATGACCC
1 AACTC-AAAATGACAC
31264 AACTCAAAA
1 AACTCAAAA
31273 CCAACCCGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 1 0.05
15 19 0.90
16 1 0.05
ACGTcount: A:0.54, C:0.28, G:0.05, T:0.13
Consensus pattern (15 bp):
AACTCAAAATGACAC
Found at i:34507 original size:20 final size:20
Alignment explanation
Indices: 34456--34511 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
34446 ACATTTTCAG
*
34456 CCATTGGATT-ATTTTTTGA
1 CCATTGGATTAAATTTTTGA
* *
34475 CTAGTT-GAATAAATTTTTGA
1 CCA-TTGGATTAAATTTTTGA
34495 CCATTGGATTAAATTTT
1 CCATTGGATTAAATTTT
34512 GTCTTTTGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 7 0.24
20 22 0.76
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.48
Consensus pattern (20 bp):
CCATTGGATTAAATTTTTGA
Found at i:42302 original size:21 final size:20
Alignment explanation
Indices: 42285--42324 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
42275 AAGCCTTAGT
42285 TTATCTAAATTTGACCTTAA
1 TTATCTAAATTTGACCTTAA
*
42305 TTCTCTAAATTTGACCTTAA
1 TTATCTAAATTTGACCTTAA
42325 ACTTCCTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.17, G:0.05, T:0.45
Consensus pattern (20 bp):
TTATCTAAATTTGACCTTAA
Found at i:43271 original size:30 final size:30
Alignment explanation
Indices: 43231--43288 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
43221 GGCTTGTGAA
*
43231 TACTACTAGTTATGCACTAAGTCATGGCCT
1 TACTACTAGTTATGCACTAAATCATGGCCT
* *
43261 TACTATTAGTTATGCAGTAAATCATGGC
1 TACTACTAGTTATGCACTAAATCATGGC
43289 ACTACTCCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (30 bp):
TACTACTAGTTATGCACTAAATCATGGCCT
Found at i:48634 original size:116 final size:116
Alignment explanation
Indices: 48359--48649 Score: 284
Period size: 114 Copynumber: 2.5 Consensus size: 116
48349 CAAAAAAGGG
* ** * * * * * *
48359 TTGAATAATTTATTTCATTTAAGGTTAAGATACAATCTCCTTAGTG-AAGTAGATAGTT-CTCTT
1 TTGAATAATTTACTTCATCAAAGTTTAAGAAACAATCTCCCTAATGAAAGTGGATGGTTCCT-TT
* * * * * *
48422 T-GCCTTAACTATAATCGCTTATATATTAGCCTAAGATACTTATTTAAAAGG
65 TGGTCGTAACTATAATCGCTCATACATTAGCCAAAGATACTTATTTAAAAGA
*
48473 TTGAATAATTTACTTCATCAAAGTTTAAGAAACAATCTCCCTAATGAAA-TGGATTGTTCCTTTT
1 TTGAATAATTTACTTCATCAAAGTTTAAGAAACAATCTCCCTAATGAAAGTGGATGGTTCCTTTT
* * *
48537 GGTCGTAACTATAATTGCTCATACATTGGCCAAAGATGCTTATTTAAAATGA
66 GGTCGTAACTATAATCGCTCATACATTAGCCAAAGATACTTATTTAAAA-GA
** *** * ** *
48589 TTGAATAATTTACTTTGTTTTAGTTTCAGATCCAATCTCCTTAATGAAAGTGGATGGTTCC
1 TTGAATAATTTACTTCATCAAAGTTTAAGAAACAATCTCCCTAATGAAAGTGGATGGTTCC
48650 CCGTGGCCGC
Statistics
Matches: 144, Mismatches: 28, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
114 49 0.34
115 44 0.31
116 41 0.28
117 10 0.07
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (116 bp):
TTGAATAATTTACTTCATCAAAGTTTAAGAAACAATCTCCCTAATGAAAGTGGATGGTTCCTTTT
GGTCGTAACTATAATCGCTCATACATTAGCCAAAGATACTTATTTAAAAGA
Found at i:48696 original size:95 final size:95
Alignment explanation
Indices: 48574--48745 Score: 233
Period size: 95 Copynumber: 1.8 Consensus size: 95
48564 GGCCAAAGAT
** *
48574 GCTTATTTAAAATGATTGAATAATTTACTTTGTTT-TAGTTTCAGATCCAATCTC-CTTAATGAA
1 GCTTATTTAAAATGATTGAATAATTTACTTCATTTAT-GATTCAGATCCAATCTCTC-TAATGAA
48637 AGTGGATGGTTCCCCGTGGCCGCATTCTTAAA
64 AGTGGATGGTTCCCCGTGGCCGCATTCTTAAA
* * **
48669 GCTTATTTTAAAA-GATTGAATAGTTTACTTCATTTATGATTGAGATTTAATCTCTCTAATGAAA
1 GCTTA-TTTAAAATGATTGAATAATTTACTTCATTTATGATTCAGATCCAATCTCTCTAATGAAA
48733 GTGGATGGTTCCC
65 GTGGATGGTTCCC
48746 TTTAGTAGCT
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
95 58 0.87
96 9 0.13
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (95 bp):
GCTTATTTAAAATGATTGAATAATTTACTTCATTTATGATTCAGATCCAATCTCTCTAATGAAAG
TGGATGGTTCCCCGTGGCCGCATTCTTAAA
Found at i:53118 original size:12 final size:11
Alignment explanation
Indices: 53097--53223 Score: 58
Period size: 12 Copynumber: 10.6 Consensus size: 11
53087 AGTAATTATC
53097 CCAAAGGTTGTT
1 CCAAA-GTTGTT
53109 CCAAGAGTTGTT
1 CCAA-AGTTGTT
53121 CCAAAGGTTGTT
1 CCAAA-GTTGTT
*
53133 TCAAGAGTT-TT
1 CCAA-AGTTGTT
*
53144 GCAAAAGGTTGTT
1 -CCAAA-GTTGTT
** * *
53157 GTAAAAGTTATG
1 -CCAAAGTTGTT
53169 CCAAAGTTTGTT
1 CCAAAG-TTGTT
*
53181 CCAACAATTGTT
1 CCAA-AGTTGTT
*
53193 CCAAAGGTTGTC
1 CCAAA-GTTGTT
* *
53205 CCAAGAGTTATG
1 CCAA-AGTTGTT
53217 CCAAAGT
1 CCAAAGT
53224 ACTAGGAGCT
Statistics
Matches: 90, Mismatches: 15, Indels: 21
0.71 0.12 0.17
Matches are distributed among these distances:
11 12 0.13
12 67 0.74
13 11 0.12
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (11 bp):
CCAAAGTTGTT
Found at i:53124 original size:24 final size:24
Alignment explanation
Indices: 53092--53222 Score: 120
Period size: 24 Copynumber: 5.5 Consensus size: 24
53082 ACAAAAGTAA
*
53092 TTATCCCAAAGGTTGTTCCAAGAG
1 TTATTCCAAAGGTTGTTCCAAGAG
* *
53116 TTGTTCCAAAGGTTGTTTCAAGAG
1 TTATTCCAAAGGTTGTTCCAAGAG
* ** *
53140 TT-TTGCAAAAGGTTGTTGTAAAAG
1 TTATT-CCAAAGGTTGTTCCAAGAG
* * * *
53164 TTATGCCAAAGTTTGTTCCAACAA
1 TTATTCCAAAGGTTGTTCCAAGAG
* *
53188 TTGTTCCAAAGGTTGTCCCAAGAG
1 TTATTCCAAAGGTTGTTCCAAGAG
*
53212 TTATGCCAAAG
1 TTATTCCAAAG
53223 TACTAGGAGC
Statistics
Matches: 83, Mismatches: 22, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
23 2 0.02
24 80 0.96
25 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (24 bp):
TTATTCCAAAGGTTGTTCCAAGAG
Found at i:55523 original size:14 final size:14
Alignment explanation
Indices: 55503--55536 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
55493 TTCTTTGTTT
55503 TAAAAAAAATT-AA
1 TAAAAAAAATTCAA
*
55516 TCAAAAAAATTCAA
1 TAAAAAAAATTCAA
55530 TAAAAAA
1 TAAAAAA
55537 TTAAAACTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAAAAAAATTCAA
Found at i:56457 original size:15 final size:16
Alignment explanation
Indices: 56431--56466 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
56421 TTTATTTATT
*
56431 TATTTATTTAAATCAA
1 TATTTATTTAAATAAA
56447 TATTT-TTTAAATAAA
1 TATTTATTTAAATAAA
56462 TATTT
1 TATTT
56467 CAACATGGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTTATTTAAATAAA
Found at i:56531 original size:14 final size:14
Alignment explanation
Indices: 56512--56652 Score: 75
Period size: 14 Copynumber: 9.7 Consensus size: 14
56502 TCATTGTTGA
56512 AGGTATTTTGGCAT
1 AGGTATTTTGGCAT
*
56526 AGGTATCTTTGGCAC
1 AGGTAT-TTTGGCAT
* * *
56541 AGTTATTATGGCAC
1 AGGTATTTTGGCAT
* *
56555 AAGTATTATGGCAT
1 AGGTATTTTGGCAT
* **
56569 AGATACTTTTGGTGT
1 AGGTA-TTTTGGCAT
* *
56584 AGGTACCTTTAGCAT
1 AGGTA-TTTTGGCAT
* * *
56599 AGTTATTCTAGCAT
1 AGGTATTTTGGCAT
* *
56613 AGGTACTTCTGTCAT
1 AGGTA-TTTTGGCAT
*
56628 AAGTATTTTGGCAT
1 AGGTATTTTGGCAT
*
56642 AAGTAGTTTTG
1 AGGTA-TTTTG
56653 ACAACAACAC
Statistics
Matches: 98, Mismatches: 25, Indels: 7
0.75 0.19 0.05
Matches are distributed among these distances:
14 50 0.51
15 48 0.49
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.40
Consensus pattern (14 bp):
AGGTATTTTGGCAT
Found at i:56547 original size:29 final size:29
Alignment explanation
Indices: 56515--56642 Score: 91
Period size: 29 Copynumber: 4.4 Consensus size: 29
56505 TTGTTGAAGG
*
56515 TATTTTGGCATAGGTATCTTTGGCACAGT
1 TATTTTGGCATAGGTATCTTTGGCATAGT
* * * * *
56544 TATTATGGCACAAGTAT-TATGGCATAGA
1 TATTTTGGCATAGGTATCTTTGGCATAGT
** * *
56572 TACTTTTGGTGTAGGTACCTTTAGCATAGT
1 TA-TTTTGGCATAGGTATCTTTGGCATAGT
* * *
56602 TATTCTAGCATAGGTA-CTTCTGTCATAAG-
1 TATTTTGGCATAGGTATCTT-TGGCAT-AGT
56631 TATTTTGGCATA
1 TATTTTGGCATA
56643 AGTAGTTTTG
Statistics
Matches: 72, Mismatches: 23, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
28 13 0.18
29 47 0.65
30 12 0.17
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (29 bp):
TATTTTGGCATAGGTATCTTTGGCATAGT
Found at i:59399 original size:21 final size:21
Alignment explanation
Indices: 59373--59412 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
59363 TAAAATAATA
*
59373 TTTATTTATTATTTTATTTAT
1 TTTATTCATTATTTTATTTAT
*
59394 TTTATTCATTTTTTTATTT
1 TTTATTCATTATTTTATTT
59413 TTGAAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTATTCATTATTTTATTTAT
Found at i:60283 original size:17 final size:16
Alignment explanation
Indices: 60254--60311 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 16
60244 GTTTAGCTTG
*
60254 CTTTTTCTTATTTTCT
1 CTTTTTTTTATTTTCT
60270 CTTTTTTTTAATTTTCT
1 CTTTTTTTT-ATTTTCT
* *
60287 TTTTCTTTTTTTTTTCT
1 CTTT-TTTTTATTTTCT
60304 CTCTTTTT
1 CT-TTTTT
60312 CTTTCTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
16 8 0.23
17 20 0.57
18 7 0.20
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (16 bp):
CTTTTTTTTATTTTCT
Found at i:60295 original size:21 final size:21
Alignment explanation
Indices: 60255--60315 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
60245 TTTAGCTTGC
*
60255 TTTTTCT-TATTTTCTCTTTTT
1 TTTTTCTCTCTTTT-TCTTTTT
60276 TTTAATT-T-TCTTTTTCTTTTT
1 TTT--TTCTCTCTTTTTCTTTTT
60297 TTTTTCTCTCTTTTTCTTT
1 TTTTTCTCTCTTTTTCTTT
60316 CTATTTGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
19 2 0.06
20 1 0.03
21 24 0.69
22 6 0.17
23 2 0.06
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTCTCTCTTTTTCTTTTT
Found at i:60300 original size:16 final size:16
Alignment explanation
Indices: 60254--60300 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
60244 GTTTAGCTTG
* *
60254 CTTTTTCTTATTTTCT
1 CTTTTTCTTTTTTTTT
**
60270 CTTTTT-TTTAATTTT
1 CTTTTTCTTTTTTTTT
60285 CTTTTTCTTTTTTTTT
1 CTTTTTCTTTTTTTTT
60301 TCTCTCTTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (16 bp):
CTTTTTCTTTTTTTTT
Found at i:62939 original size:18 final size:20
Alignment explanation
Indices: 62902--62942 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
62892 CACGTCGTGG
62902 AATAGTGATAATTATTTTAT
1 AATAGTGATAATTATTTTAT
*
62922 AATAGTGATTA-T-TTTTAT
1 AATAGTGATAATTATTTTAT
62940 AAT
1 AAT
62943 CAATATCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 1 0.05
20 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (20 bp):
AATAGTGATAATTATTTTAT
Found at i:67494 original size:58 final size:58
Alignment explanation
Indices: 67324--67579 Score: 336
Period size: 58 Copynumber: 4.4 Consensus size: 58
67314 CAAATCTGGA
* * * * * *
67324 TCGCCTTGGTGGTGATCTAAGTTTAGGTGACTTGGTGTCACTTAATGTGGGAATCTGGG
1 TCGCCTTGGTGGCGATCTAAGTTTGGGTGACTTGGCGTCACTTAGTGTGTGAATC-CGG
* * * *
67383 TCGCCTTGGTGGCGATC-CA-TTTGGGTGACTTGGCATCACTTATTGTGTAAATCCGG
1 TCGCCTTGGTGGCGATCTAAGTTTGGGTGACTTGGCGTCACTTAGTGTGTGAATCCGG
* *
67439 TCGCCTTGGTGGCGATCTAAGTTTGGGTGACTTGGCGTCAATTAGTGTATGAATCCGG
1 TCGCCTTGGTGGCGATCTAAGTTTGGGTGACTTGGCGTCACTTAGTGTGTGAATCCGG
* **
67497 TCGCCTTGGTGGCGATCTAAGTTTGGGTGACTTGGCGTCACTTAGTGTGCGAATTTGG
1 TCGCCTTGGTGGCGATCTAAGTTTGGGTGACTTGGCGTCACTTAGTGTGTGAATCCGG
* *
67555 TCGCCGTGGTGGTGATCTAAGTTTG
1 TCGCCTTGGTGGCGATCTAAGTTTG
67580 CAGTGTGATA
Statistics
Matches: 173, Mismatches: 22, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
56 19 0.11
57 29 0.17
58 109 0.63
59 16 0.09
ACGTcount: A:0.16, C:0.17, G:0.33, T:0.34
Consensus pattern (58 bp):
TCGCCTTGGTGGCGATCTAAGTTTGGGTGACTTGGCGTCACTTAGTGTGTGAATCCGG
Found at i:67565 original size:116 final size:115
Alignment explanation
Indices: 67293--67579 Score: 371
Period size: 116 Copynumber: 2.5 Consensus size: 115
67283 GAGTTTGAAG
* *
67293 GACTTGGCATC-GTGTAGTGTGCAAATCTGGATCGCCTTGGTGGTGATCTAAGTTTAGGTGACTT
1 GACTTGGCATCACT-TAGTGTGCAAATCTGG-TCGCCTTGGTGGTGATCTAAGTTTGGGTGACTT
* * * * *
67357 GGTGTCACTTAATGTGGGAATCTGGGTCGCCTTGGTGGCGATCCATTTGGGT
64 GGCGTCAATTAATGTAGGAATCTCGGTCGCCTTGGTGGCGATCAATTTGGGT
* * * *
67409 GACTTGGCATCACTTATTGTGTAAATCCGGTCGCCTTGGTGGCGATCTAAGTTTGGGTGACTTGG
1 GACTTGGCATCACTTAGTGTGCAAATCTGGTCGCCTTGGTGGTGATCTAAGTTTGGGTGACTTGG
* *
67474 CGTCAATTAGTGTATGAATC-CGGTCGCCTTGGTGGCGATCTAAGTTTGGGT
66 CGTCAATTAATGTAGGAATCTCGGTCGCCTTGGTGGCGATC-AA-TTTGGGT
* * * *
67525 GACTTGGCGTCACTTAGTGTGCGAATTTGGTCGCCGTGGTGGTGATCTAAGTTTG
1 GACTTGGCATCACTTAGTGTGCAAATCTGGTCGCCTTGGTGGTGATCTAAGTTTG
67580 CAGTGTGATA
Statistics
Matches: 147, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
114 19 0.13
115 49 0.33
116 78 0.53
117 1 0.01
ACGTcount: A:0.16, C:0.17, G:0.33, T:0.34
Consensus pattern (115 bp):
GACTTGGCATCACTTAGTGTGCAAATCTGGTCGCCTTGGTGGTGATCTAAGTTTGGGTGACTTGG
CGTCAATTAATGTAGGAATCTCGGTCGCCTTGGTGGCGATCAATTTGGGT
Found at i:73617 original size:756 final size:756
Alignment explanation
Indices: 72165--73681 Score: 2899
Period size: 756 Copynumber: 2.0 Consensus size: 756
72155 AAAGCTGGTA
*
72165 GAGCTTCTTGGGCCGGGCATCAGTAAGGGCATACTTCAAGTGTTTATGCCGTACTCCAGAGATGA
1 GAGCTTCTTGGGCCGAGCATCAGTAAGGGCATACTTCAAGTGTTTATGCCGTACTCCAGAGATGA
* *
72230 AGGCCTGTATTGCCCACTCGTCATTAAGTTCATGAACTTCAAGTGTGGTAGTATTAAATCGCTTT
66 AGGCCTGTATTGCCCACTCGTCATTAAGTTCATGAACTTCAAGTGTGGCAGTATTAAATCACTTT
* *
72295 ATGTATTCCCTTAAGGTTTGTTCGGGGTTTTACTTTATGGCCATTAAACTGGCTGAGGTCCTCGC
131 ATGTATTCCCTTAAGGTTTCTTCGGGGTTTTACTTTACGGCCATTAAACTGGCTGAGGTCCTCGC
*
72360 AGCGGTTAAATAGCTCCCAAATTAGGCTAAAAAGCTCCTTCCTAATAGGCAAAATTTGTTATTGA
196 AGCGGTTAAATAGCTCCCAAAGTAGGCTAAAAAGCTCCTTCCTAATAGGCAAAATTTGTTATTGA
72425 GCCCGGGTTGAGAGAATACCACCATGTTTGGGCCGGCCCTCGTAGTGTGGTAGGAAAGATGCAGC
261 GCCCGGGTTGAGAGAATACCACCATGTTTGGGCCGGCCCTCGTAGTGTGGTAGGAAAGATGCAGC
72490 ACTGCACAGCATCCAGGACATCTCTGAGGCTATGGAAGGACTGAAAGTGGTTCAAATGGTCCGTT
326 ACTGCACAGCATCCAGGACATCTCTGAGGCTATGGAAGGACTGAAAGTGGTTCAAATGGTCCGTT
72555 GGGTTGGCTGTGCCATCGTACGTATCCGTCAGCATCTTAACCTTTTGGGGAACTGAAATTCGCCT
391 GGGTTGGCTGTGCCATCGTACGTATCCGTCAGCATCTTAACCTTTTGGGGAACTGAAATTCGCCT
* * *
72620 GATCGACCTTGACAGGGGGTTATTCCCATCATTGAGCCATTCCCATTCATTTTTGTGGGATGGCG
456 GATCGACCCTGACAGGGGGTTATTCCCATCATCGAGCCATTCCCATTCATTTTTGTGGGATGGCA
72685 GAGATTCTTAATCTCGTTCTTGAGCACAGCTATCTGCTCAGCCAAGCCGCTACCCTAAGTGGGGC
521 GAGATTCTTAATCTCGTTCTTGAGCACAGCTATCTGCTCAGCCAAGCCGCTACCCTAAGTGGGGC
72750 ATGACGGTCCGCTGGTCTGGTCTGAAGGCTTCCAAAGTTGGGTTTGGTGCTTCGGGGTGGAGCAT
586 ATGACGGTCCGCTGGTCTGGTCTGAAGGCTTCCAAAGTTGGGTTTGGTGCTTCGGGGTGGAGCAT
*
72815 GAGCTTCCCACAGCTACTGGCCTTTCTGGATCTTCTTGTTGGGTAGCCGGGTCCGGGCGGCCAGG
651 GAGCTTCCCACAGCTACTGGCCTTTCTGGATCTTCTTGTCGGGTAGCCGGGTCCGGGCGGCCAGG
*
72880 GTTTGGTCCCGTCTGTCGATCACCTTGCAAGTTCACGGGTC
716 GTTTGGTCCCATCTGTCGATCACCTTGCAAGTTCACGGGTC
72921 GAGCTTCTTGGGCCGAGCATCAGTAAGGGCATACTTCAAGTGTTTATGCCGTACTCCAGAGATGA
1 GAGCTTCTTGGGCCGAGCATCAGTAAGGGCATACTTCAAGTGTTTATGCCGTACTCCAGAGATGA
72986 AGGCCTGTATTGCCCACTCGTCATTAAGTTCATGAACTTCAAGTGTGGCAGTATTAAATCACTTT
66 AGGCCTGTATTGCCCACTCGTCATTAAGTTCATGAACTTCAAGTGTGGCAGTATTAAATCACTTT
73051 ATGTATTCCCTTAAGGTTTCTTCGGGGTTTTACTTTACGGCCATTAAACTGGCTGAGGTCCTCGC
131 ATGTATTCCCTTAAGGTTTCTTCGGGGTTTTACTTTACGGCCATTAAACTGGCTGAGGTCCTCGC
* *
73116 AGCGGTTCAATAGCTCCCAAAGTGGGCTAAAAAGCTCCTTCCTAATAGGCAAAATTTGTTATTGA
196 AGCGGTTAAATAGCTCCCAAAGTAGGCTAAAAAGCTCCTTCCTAATAGGCAAAATTTGTTATTGA
73181 GCCCGGGTTGAGAGAATACCACCATGTTTGGGCCGGCCCTCGTAGTGTGGTAGGAAAGATGCAGC
261 GCCCGGGTTGAGAGAATACCACCATGTTTGGGCCGGCCCTCGTAGTGTGGTAGGAAAGATGCAGC
73246 ACTGCACAGCATCCAGGACATCTCTGAGGCTATGGAAGGACTGAAAGTGGTTCAAATGGTCCGTT
326 ACTGCACAGCATCCAGGACATCTCTGAGGCTATGGAAGGACTGAAAGTGGTTCAAATGGTCCGTT
73311 GGGTTGGCTGTGCCATCGTACGTATCCGTCAGCATCTTAACCTTTTGGGGAACTGAAATTCGCCT
391 GGGTTGGCTGTGCCATCGTACGTATCCGTCAGCATCTTAACCTTTTGGGGAACTGAAATTCGCCT
*
73376 GATCGACCCTGACAGGGGGTTATTCCCATCATCGAGCCATTCCTATTCATTTTTGTGGGATGGCA
456 GATCGACCCTGACAGGGGGTTATTCCCATCATCGAGCCATTCCCATTCATTTTTGTGGGATGGCA
73441 GAGATTCTTAATCTCGTTCTTGAGCACAGCTATCTGCTCAGCCAAGCCGCTACCCTAAGTGGGGC
521 GAGATTCTTAATCTCGTTCTTGAGCACAGCTATCTGCTCAGCCAAGCCGCTACCCTAAGTGGGGC
73506 ATGACGGTCCGCTGGTCTGGTCTGAAGGCTTCCAAAGTTGGGTTTGGTGCTTCGGGGTGGAGCAT
586 ATGACGGTCCGCTGGTCTGGTCTGAAGGCTTCCAAAGTTGGGTTTGGTGCTTCGGGGTGGAGCAT
*
73571 GAGCTTCCCACAGCTACTGGCCTTTTTGGATCTTCTTGTCGGGTAGCCGGGTCCGGGCGGCCAGG
651 GAGCTTCCCACAGCTACTGGCCTTTCTGGATCTTCTTGTCGGGTAGCCGGGTCCGGGCGGCCAGG
73636 GTTTGGTCCCATCTGTCGATCACCTTGCAAGTTCACGGGTC
716 GTTTGGTCCCATCTGTCGATCACCTTGCAAGTTCACGGGTC
73677 GAGCT
1 GAGCT
73682 AGTTGCTATT
Statistics
Matches: 746, Mismatches: 15, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
756 746 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (756 bp):
GAGCTTCTTGGGCCGAGCATCAGTAAGGGCATACTTCAAGTGTTTATGCCGTACTCCAGAGATGA
AGGCCTGTATTGCCCACTCGTCATTAAGTTCATGAACTTCAAGTGTGGCAGTATTAAATCACTTT
ATGTATTCCCTTAAGGTTTCTTCGGGGTTTTACTTTACGGCCATTAAACTGGCTGAGGTCCTCGC
AGCGGTTAAATAGCTCCCAAAGTAGGCTAAAAAGCTCCTTCCTAATAGGCAAAATTTGTTATTGA
GCCCGGGTTGAGAGAATACCACCATGTTTGGGCCGGCCCTCGTAGTGTGGTAGGAAAGATGCAGC
ACTGCACAGCATCCAGGACATCTCTGAGGCTATGGAAGGACTGAAAGTGGTTCAAATGGTCCGTT
GGGTTGGCTGTGCCATCGTACGTATCCGTCAGCATCTTAACCTTTTGGGGAACTGAAATTCGCCT
GATCGACCCTGACAGGGGGTTATTCCCATCATCGAGCCATTCCCATTCATTTTTGTGGGATGGCA
GAGATTCTTAATCTCGTTCTTGAGCACAGCTATCTGCTCAGCCAAGCCGCTACCCTAAGTGGGGC
ATGACGGTCCGCTGGTCTGGTCTGAAGGCTTCCAAAGTTGGGTTTGGTGCTTCGGGGTGGAGCAT
GAGCTTCCCACAGCTACTGGCCTTTCTGGATCTTCTTGTCGGGTAGCCGGGTCCGGGCGGCCAGG
GTTTGGTCCCATCTGTCGATCACCTTGCAAGTTCACGGGTC
Found at i:75634 original size:16 final size:16
Alignment explanation
Indices: 75608--75658 Score: 68
Period size: 16 Copynumber: 3.1 Consensus size: 16
75598 ACATAATAAA
75608 AAAATTTTAAATATATC
1 AAAA-TTTAAATATATC
75625 AAAATTTAAATAATAT-
1 AAAATTTAAAT-ATATC
*
75641 AAAATTTAAATGTATC
1 AAAATTTAAATATATC
75657 AA
1 AA
75659 TTTATACATT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
15 3 0.10
16 20 0.65
17 8 0.26
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (16 bp):
AAAATTTAAATATATC
Found at i:75639 original size:19 final size:18
Alignment explanation
Indices: 75572--75651 Score: 71
Period size: 16 Copynumber: 4.6 Consensus size: 18
75562 TACGAAAAAT
* *
75572 AAAATTAAAATATTATAC
1 AAAATTTAAATAATATAC
* *
75590 AAAATATAACATAATA-AA
1 AAAATTTAA-ATAATATAC
75608 AAAATTTTAAAT-ATAT-C
1 AAAA-TTTAAATAATATAC
75625 AAAATTTAAATAATAT--
1 AAAATTTAAATAATATAC
75641 AAAATTTAAAT
1 AAAATTTAAAT
75652 GTATCAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
16 18 0.35
17 11 0.21
18 14 0.27
19 9 0.17
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (18 bp):
AAAATTTAAATAATATAC
Found at i:76209 original size:2 final size:2
Alignment explanation
Indices: 76202--76227 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
76192 TATTTTATTG
76202 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
76228 TAAGTGAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79973 original size:21 final size:20
Alignment explanation
Indices: 79949--79987 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
79939 AATCTAATTA
79949 ATTACTTAATAATATTATAAT
1 ATTACTTAAT-ATATTATAAT
*
79970 ATTATTTAATATATTATA
1 ATTACTTAATATATTATA
79988 TATCATTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTACTTAATATATTATAAT
Found at i:80451 original size:18 final size:18
Alignment explanation
Indices: 80419--80464 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
80409 TAACATATCA
* * *
80419 AATTTTTTATGATAAGTT
1 AATTTTATATAATAAATT
*
80437 GATTTTATATAATAAATT
1 AATTTTATATAATAAATT
80455 AATTTTATAT
1 AATTTTATAT
80465 CCTTTCAATG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (18 bp):
AATTTTATATAATAAATT
Found at i:82037 original size:69 final size:69
Alignment explanation
Indices: 81888--82039 Score: 223
Period size: 69 Copynumber: 2.2 Consensus size: 69
81878 GAGAAATGGA
* * *
81888 GTTGGAGTATCCCCGATAATGATAATTTGGATAAAATAAGACTTAAATTTTGATGAGTTTAAAAA
1 GTTGGAGTATCCCCGACAATGATAATTTAGACAAAATAAGACTTAAATTTTGATGAGTTTAAAAA
81953 CAAG
66 CAAG
* * *
81957 GTTAGAGTATCCCCGACAATGATAATTTAGACAAAATAAGATTTAAATTTTGATGAGTTTACAAA
1 GTTGGAGTATCCCCGACAATGATAATTTAGACAAAATAAGACTTAAATTTTGATGAGTTTAAAAA
**
82022 CGGG
66 CAAG
*
82026 GTTGGAATATCCCC
1 GTTGGAGTATCCCC
82040 TCGGAGGAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 73 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (69 bp):
GTTGGAGTATCCCCGACAATGATAATTTAGACAAAATAAGACTTAAATTTTGATGAGTTTAAAAA
CAAG
Found at i:83998 original size:17 final size:17
Alignment explanation
Indices: 83944--84040 Score: 86
Period size: 17 Copynumber: 5.6 Consensus size: 17
83934 TTTCCACATT
*
83944 TTTTTATTTTTTTATTA
1 TTTTAATTTTTTTATTA
* * **
83961 ATTTGATTTTTTTAGAAA
1 TTTTAATTTTTTTA-TTA
*
83979 TTTTAATTTTTTTTTTA
1 TTTTAATTTTTTTATTA
* *
83996 TTTTAAATTTTTTGATTG
1 TTTT-AATTTTTTTATTA
* *
84014 TTTTCATTTTATTATTA
1 TTTTAATTTTTTTATTA
84031 TTTTAATTTT
1 TTTTAATTTT
84041 ATATATAAAA
Statistics
Matches: 61, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
17 35 0.57
18 26 0.43
ACGTcount: A:0.23, C:0.01, G:0.04, T:0.72
Consensus pattern (17 bp):
TTTTAATTTTTTTATTA
Found at i:84902 original size:52 final size:50
Alignment explanation
Indices: 84812--85259 Score: 299
Period size: 52 Copynumber: 8.9 Consensus size: 50
84802 TATTGGACTT
* * * ** *
84812 AAAGGTGCTAATGTGCTGATTGAAGGCCAGTGACATTGGACTTAAAGATG
1 AAAGATGCCAATGTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATG
* * * * * *
84862 ACAAAGGTGCCAATATACTAATTCAAGGCCAACGATATTGGGCTTAAAGGTG
1 --AAAGATGCCAATGTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATG
* * * * * *
84914 CGAAGAATGTCAATGTGCTGATTCACGGCCAACGACATTAGACTTGAAGATGAG
1 -AAAG-ATGCCAATGTGCTGATTCAAGGCCAACGATATTGGACTTAAAGAT--G
* * * * * *
84968 AAAAATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTTGGAATG-TT
1 AAAGATGCCAATGTGCTGATTCAAGGCCAACGATATTGGAC-TT--AAAGATG
* * **
85020 AAAGATGCCAATATGCTGATTCAAGGCCAATGATATCAGACTTAAAGAT-
1 AAAGATGCCAATGTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATG
* * *
85069 AAAGGTGCCAATGTGCTGATTCAAGGCTAGCGATATTGGACTTAAAGATG
1 AAAGATGCCAATGTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATG
* * * * *
85119 -GAGGTGCCAATGTGCTAATTCAAGGCTAACGACATTGGACTTAAATG-TGG
1 AAAGATGCCAATGTGCTGATTCAAGGCCAACGATATTGGACTTAAA-GAT-G
* * * *
85169 TAAAAATGCTAATATGCTGATTTAAGG-CAAGCGATATTGGACTT-AA-A-G
1 -AAAGATGCCAATGTGCTGATTCAAGGCCAA-CGATATTGGACTTAAAGATG
* * * *
85217 ---G-TGCCAATATGCTAATTCAAGGCCAGCGATATTAGACTTAAAG
1 AAAGATGCCAATGTGCTGATTCAAGGCCAACGATATTGGACTTAAAG
85260 GTACCAATGT
Statistics
Matches: 312, Mismatches: 67, Indels: 41
0.74 0.16 0.10
Matches are distributed among these distances:
43 30 0.10
44 4 0.01
48 1 0.00
49 87 0.28
50 3 0.01
51 10 0.03
52 169 0.54
53 4 0.01
54 2 0.01
55 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (50 bp):
AAAGATGCCAATGTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATG
Found at i:84929 original size:104 final size:102
Alignment explanation
Indices: 84821--85220 Score: 346
Period size: 104 Copynumber: 3.9 Consensus size: 102
84811 TAAAGGTGCT
* ** * ** * *
84821 AATGTGCTGATTGAAGGCCAGTGACATTGGACTTAAAGATGACAAAGGTGCCAATATACTAATTC
1 AATGTGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGA-AAAAATGCCAATATGCTGATTC
* *
84886 AAGGCCAACGATATTGGGCTTAAAGGTGCGAAGAATGTC
65 AAGGCCAACGATATTGGACTTAAAGGTGCGAAG-ATGCC
* * *
84925 AATGTGCTGATTCACGGCCAACGACATTAGACTTGAAGATGAGAAAAATGCCAATGTGCTGATTC
1 AATGTGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGA-AAAAATGCCAATATGCTGATTC
* * * * * **
84990 AAGGCCAGCGACATTGGGCTTTGGAATGT-TAAAGATGCC
65 AAGGCCAACGATATTGGAC-TT-AAAGGTGCGAAGATGCC
* * * * ** *
85029 AATATGCTGATTCAAGGCCAATGATATCAGACTTAAAGAT--AAAGGTGCCAATGTGCTGATTCA
1 AATGTGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAAAAAATGCCAATATGCTGATTCA
* * * *
85092 AGGCTAGCGATATTGGACTTAAAGATG-G-AGGTGCC
66 AGGCCAACGATATTGGACTTAAAGGTGCGAAGATGCC
* * * * *
85127 AATGTGCTAATTCAAGGCTAACGACATTGGACTTAAATG-TGGTAAAAATGCTAATATGCTGATT
1 AATGTGCTGATTCAAGGCCAACGACATTAGACTTAAA-GAT-GAAAAAATGCCAATATGCTGATT
*
85191 TAAGG-CAAGCGATATTGGACTTAAAGGTGC
64 CAAGGCCAA-CGATATTGGACTTAAAGGTGC
85221 CAATATGCTA
Statistics
Matches: 237, Mismatches: 50, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
98 37 0.16
99 4 0.02
100 3 0.01
101 76 0.32
104 108 0.46
105 5 0.02
106 4 0.02
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (102 bp):
AATGTGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAAAAAATGCCAATATGCTGATTCA
AGGCCAACGATATTGGACTTAAAGGTGCGAAGATGCC
Found at i:85245 original size:43 final size:43
Alignment explanation
Indices: 85179--85294 Score: 160
Period size: 43 Copynumber: 2.7 Consensus size: 43
85169 TAAAAATGCT
* *
85179 AATATGCTGATTTAAGGCAAGCGATATTGGACTTAAAGGTGCC
1 AATATGCTGATTCAAGGCAAGCGATATTGGACTTAAAGGTACC
* * *
85222 AATATGCTAATTCAAGGCCAGCGATATTAGACTTAAAGGTACC
1 AATATGCTGATTCAAGGCAAGCGATATTGGACTTAAAGGTACC
* * *
85265 AATGTGCTGATTCAAGGCTAGCGACATTGG
1 AATATGCTGATTCAAGGCAAGCGATATTGG
85295 GCCTAGAAAG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (43 bp):
AATATGCTGATTCAAGGCAAGCGATATTGGACTTAAAGGTACC
Found at i:85336 original size:32 final size:32
Alignment explanation
Indices: 85312--85463 Score: 155
Period size: 32 Copynumber: 4.7 Consensus size: 32
85302 AAGAGATACT
* *
85312 ACCAACTTGTGTGGGCTTTTGAAAGGGTTACC
1 ACCAACTTGTGTGGGCTTTTGAAAGAGTTGCC
* * *
85344 ACCAGCTTGAGTGGGC-TTTGAGAAGGGTTGCC
1 ACCAACTTGTGTGGGCTTTTGA-AAGAGTTGCC
* * *
85376 ACCGACTTGTGTGGGCTTTTGAAGAAAGTTGCT
1 ACCAACTTGTGTGGGCTTTTGAA-AGAGTTGCC
* * *
85409 ACTAGCTTGTGTGGGCTTTAGAGAA-AGTTGCC
1 ACCAACTTGTGTGGGCTTTTGA-AAGAGTTGCC
*
85441 ACAAACTTGTGTGGGCTTTTGAA
1 ACCAACTTGTGTGGGCTTTTGAA
85464 GAAGGTTTCT
Statistics
Matches: 99, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
31 6 0.06
32 62 0.63
33 30 0.30
34 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (32 bp):
ACCAACTTGTGTGGGCTTTTGAAAGAGTTGCC
Found at i:85439 original size:65 final size:65
Alignment explanation
Indices: 85315--85466 Score: 200
Period size: 65 Copynumber: 2.4 Consensus size: 65
85305 AGATACTACC
** * *
85315 AACTTGTGTGGGCTTTTGAA-AGGGTTACCACCAGCTTGAGTGGGCTTTGAGAAGGGTTGCCACC
1 AACTTGTGTGGGCTTTTGAAGAAAGTTACCACCAGCTTGAGTGGGCTTTGAGAAGAGTTGCCACA
* * * * *
85379 GACTTGTGTGGGCTTTTGAAGAAAGTTGCTACTAGCTTGTGTGGGCTTTAGAGAA-AGTTGCCAC
1 AACTTGTGTGGGCTTTTGAAGAAAGTTACCACCAGCTTGAGTGGGCTTT-GAGAAGAGTTGCCAC
85443 A
65 A
85444 AACTTGTGTGGGCTTTTGAAGAA
1 AACTTGTGTGGGCTTTTGAAGAA
85467 GGTTTCTCCA
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
64 19 0.25
65 52 0.68
66 5 0.07
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (65 bp):
AACTTGTGTGGGCTTTTGAAGAAAGTTACCACCAGCTTGAGTGGGCTTTGAGAAGAGTTGCCACA
Found at i:85666 original size:33 final size:33
Alignment explanation
Indices: 85625--86576 Score: 496
Period size: 33 Copynumber: 28.8 Consensus size: 33
85615 TATGGACTTA
*
85625 AAAAGAAAAGATGCCACAGAGTTGTGGGCTTTG
1 AAAAGAAAAGATGCCACGGAGTTGTGGGCTTTG
* * * * *
85658 AAAAGAAAAAGGTTCCATGGAGTTATGGACTTTG
1 AAAAG-AAAAGATGCCACGGAGTTGTGGGCTTTG
*
85692 -AAGGAAAAGATGCCACGGAGTTGTGGGCTTTG
1 AAAAGAAAAGATGCCACGGAGTTGTGGGCTTTG
* * *
85724 AAAAGAAAACGGTGCCACGGGGTTGTGGAC-TT-
1 AAAAGAAAA-GATGCCACGGAGTTGTGGGCTTTG
* * * * *
85756 AAAAGGAACAAGATTCTACGGAGTTATGGACCTTG
1 AAAA-GAA-AAGATGCCACGGAGTTGTGGGCTTTG
* * *
85791 -AAGGAAGAGATGCCACGGAGTTGTGGGCTTCG
1 AAAAGAAAAGATGCCACGGAGTTGTGGGCTTTG
* * * *
85823 AAGAGAAAACAGTGCCACGGGGTTGTGGAC-TT-
1 AAAAGAAAAGA-TGCCACGGAGTTGTGGGCTTTG
*
85855 AAAAGGAACAAGATGCCACGGAGTTATGGAGC-TTG
1 AAAA-GAA-AAGATGCCACGGAGTTGTGG-GCTTTG
* * * *
85890 -AAGGAAAAGATGCTACGAAGTTGTGGAC-TT-
1 AAAAGAAAAGATGCCACGGAGTTGTGGGCTTTG
* * *
85920 AAAAGGAACAAGATGCCACGGAGTTATGGACCTTG
1 AAAA-GAA-AAGATGCCACGGAGTTGTGGGCTTTG
*
85955 -AAAGAAAATATGCCACGGAGTTGTGGGCTTTG
1 AAAAGAAAAGATGCCACGGAGTTGTGGGCTTTG
* *
85987 AAAAGAAAAAAGTGCCACGGAGTTGTGAG-TTT-
1 AAAAGAAAAGA-TGCCACGGAGTTGTGGGCTTTG
* * * **
86019 AAAAGGAACAAGGTGTCACGAAGTTGTGAACTTTG
1 AAAA-GAA-AAGATGCCACGGAGTTGTGGGCTTTG
*
86054 -AAAGAAAAGATGCCACAGAGTTGTGGGCTTTGAAG
1 AAAAGAAAAGATGCCACGGAGTTGTGGGCTTT---G
* * ** * * *
86089 AAAAGGAACAAGGTGTCATAGAGTTATGGACCTTG
1 AAAA-GAA-AAGATGCCACGGAGTTGTGGGCTTTG
* *
86124 -AAAGAAAAGATGCCACGAAGTTGTGGGCTTTA
1 AAAAGAAAAGATGCCACGGAGTTGTGGGCTTTG
* * *
86156 AAAACCAAAAGGTGCCAC-GAGGTTGTGTTATGGAC-TTA
1 AAAA-GAAAAGATGCCACGGA-GTTGTG----GG-CTTTG
* * * ***
86194 AAAAGAACAAGGTGCCATGGAGTTATGTATTTTG
1 AAAAGAA-AAGATGCCACGGAGTTGTGGGCTTTG
* * * *
86228 -AAGGAAAAGATGCCATGGAATTATGGG-TCTTG
1 AAAAGAAAAGATGCCACGGAGTTGTGGGCT-TTG
*
86260 AAAAGAAAAAGATGCCACGGAGTTGT-GAC-TT-
1 AAAAG-AAAAGATGCCACGGAGTTGTGGGCTTTG
* * * *
86291 AAAAG----GTTGTCATGGAGTTGTGGAC-TT-
1 AAAAGAAAAGATGCCACGGAGTTGTGGGCTTTG
** * *
86318 AAAAGGAAAAGATGCCACAAAGTTGTAGGCTTTA
1 AAAA-GAAAAGATGCCACGGAGTTGTGGGCTTTG
* * * *
86352 AAAAGAAAAAGGTGCCACAGAGTTGT-GGATTTA
1 AAAAG-AAAAGATGCCACGGAGTTGTGGGCTTTG
* * *
86385 AAAAGAACAAGGTGCCACAGAGTTGTGGACTTTG
1 AAAAGAA-AAGATGCCACGGAGTTGTGGGCTTTG
* * *
86419 -AAGGAAATGGATGCCATGGAGTTGTGGGCTTTG
1 AAAAGAAA-AGATGCCACGGAGTTGTGGGCTTTG
* * * **
86452 AAGAGAAAAAGGTGCCACGGGGTTGT-GGAATT-
1 AAAAG-AAAAGATGCCACGGAGTTGTGGGCTTTG
* * *
86484 AAAAGGAACAA-AGTGCCACGGAGTTATGGACCTTG
1 AAAA-GAA-AAGA-TGCCACGGAGTTGTGGGCTTTG
* ** *
86519 -AAGGAAAAGATGCCTTGGAGTTGTGGGCTTTA
1 AAAAGAAAAGATGCCACGGAGTTGTGGGCTTTG
* *
86551 AAAAGAAAAGGTGCCACGGGGTTGTG
1 AAAAGAAAAGATGCCACGGAGTTGTG
86577 TTGTGGACTT
Statistics
Matches: 702, Mismatches: 151, Indels: 132
0.71 0.15 0.13
Matches are distributed among these distances:
26 13 0.02
27 9 0.01
28 1 0.00
31 11 0.02
32 192 0.27
33 235 0.33
34 183 0.26
35 5 0.01
36 3 0.00
37 5 0.01
38 42 0.06
39 3 0.00
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.22
Consensus pattern (33 bp):
AAAAGAAAAGATGCCACGGAGTTGTGGGCTTTG
Found at i:85681 original size:34 final size:34
Alignment explanation
Indices: 85625--86576 Score: 434
Period size: 32 Copynumber: 28.8 Consensus size: 34
85615 TATGGACTTA
* *
85625 AAAAG-AAAAGATGCCACAGAGTTGTGGGCTTTG
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * * *
85658 AAAAGAAAAAGGTTCCATGGAGTTATGGACTTTG
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* *
85692 --AAGGAAAAGATGCCACGGAGTTGTGGGCTTTG
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * *
85724 AAAAGAAAACGGTGCCACGGGGTTGTGGAC-TT-
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * * * * * *
85756 AAAAGGAACAAGATTCTACGGAGTTATGGACCTTG
1 AAAA-GAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * * *
85791 --AAGGAAGAGATGCCACGGAGTTGTGGGCTTCG
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * *
85823 AAGAGAAAACA-GTGCCACGGGGTTGTGGAC-TT-
1 AAAAGAAAA-AGGTGCCACGGAGTTGTGGGCTTTG
* * *
85855 AAAAGGAACAAGATGCCACGGAGTTATGGAGC-TTG
1 AAAA-GAAAAAGGTGCCACGGAGTTGTGG-GCTTTG
* * * * *
85890 --AAGGAAAAGATGCTACGAAGTTGTGGAC-TT-
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * * * *
85920 AAAAGGAACAAGATGCCACGGAGTTATGGACCTTG
1 AAAA-GAAAAAGGTGCCACGGAGTTGTGGGCTTTG
85955 -AAAGAAAATA--TGCCACGGAGTTGTGGGCTTTG
1 AAAAGAAAA-AGGTGCCACGGAGTTGTGGGCTTTG
* *
85987 AAAAGAAAAAAGTGCCACGGAGTTGTGAG-TTT-
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * * **
86019 AAAAGGAACAAGGTGTCACGAAGTTGTGAACTTTG
1 AAAA-GAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* *
86054 -AAAG-AAAAGATGCCACAGAGTTGTGGGCTTTGAAG
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT---G
* * ** * * *
86089 AAAAGGAACAAGGTGTCATAGAGTTATGGACCTTG
1 AAAA-GAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * *
86124 -AAAG-AAAAGATGCCACGAAGTTGTGGGCTTTA
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
** *
86156 AAAACCAAAAGGTGCCAC-GAGGTTGTGTTATGGAC-TTA
1 AAAAGAAAAAGGTGCCACGGA-GTTGTG----GG-CTTTG
* * * ***
86194 AAAAGAACAAGGTGCCATGGAGTTATGTATTTTG
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * * * *
86228 --AAGGAAAAGATGCCATGGAATTATGGG-TCTTG
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCT-TTG
* *
86260 AAAAGAAAAAGATGCCACGGAGTTGT-GAC-TT-
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * * *
86291 AAAAG-----GTTGTCATGGAGTTGTGGAC-TT-
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * ** * *
86318 AAAAGGAAAAGATGCCACAAAGTTGTAGGCTTTA
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * *
86352 AAAAGAAAAAGGTGCCACAGAGTTGT-GGATTTA
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * *
86385 AAAAGAACAAGGTGCCACAGAGTTGTGGACTTTG
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * *
86419 --AAGGAAATGGATGCCATGGAGTTGTGGGCTTTG
1 AAAAGAAAAAGG-TGCCACGGAGTTGTGGGCTTTG
* * **
86452 AAGAGAAAAAGGTGCCACGGGGTTGT-GGAATT-
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
* * *
86484 AAAAGGAACAAA-GTGCCACGGAGTTATGGACCTTG
1 AAAA-GAA-AAAGGTGCCACGGAGTTGTGGGCTTTG
* * ** *
86519 --AAGGAAAAGATGCCTTGGAGTTGTGGGCTTTA
1 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
*
86551 AAAAG-AAAAGGTGCCACGGGGTTGTG
1 AAAAGAAAAAGGTGCCACGGAGTTGTG
86577 TTGTGGACTT
Statistics
Matches: 692, Mismatches: 163, Indels: 128
0.70 0.17 0.13
Matches are distributed among these distances:
26 13 0.02
27 10 0.01
31 12 0.02
32 205 0.30
33 203 0.29
34 188 0.27
35 10 0.01
36 3 0.00
37 1 0.00
38 44 0.06
39 3 0.00
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.22
Consensus pattern (34 bp):
AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTG
Found at i:85980 original size:263 final size:264
Alignment explanation
Indices: 85611--86480 Score: 702
Period size: 263 Copynumber: 3.3 Consensus size: 264
85601 GGGTGTCACA
* * * *
85611 GAGTTATGGACTTAAAAAGAAAAGATGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGGTTCCAT
1 GAGTTATGGACTTAAAAAGAAAAGATGCCACAGAGTTGTGGACTTTGAAAAGAAAAAGATGCCAC
* * **
85676 GGAGTTATGGACTTTGAAGGAAAAGATGCCACGGAGTTGTGGGCTTTGAAAAGAAAACGGTGCCA
66 GGAGTTATGGACCTTGAAAGAAAAGATGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGTGCCA
* * * * *
85741 CGGGGTTGTG-GACTTAAAAGGAACAAGAT-TCTACGGAGTTATGGACCTTGAAGGAAGAGATGC
131 CGGAGTTGTGAG-CTTAAAAGGAACAAGATGTC-ACGAAGTTATGAACCTTGAAAGAAAAGATGC
*
85804 CACGGAGTTGTGGGCTTCGAAGAGAAAACAGTGCCACGGGGTTGTGGACTTAAAAGGAACAAGAT
194 CACAGAGTTGTGGGCTTCGAAGAGAAAACAGTGCCACGGGGTTGTGGACTTAAAAGGAACAAGAT
85869 GCCACG
259 GCCACG
* * * *
85875 GAGTTATGGAGCTT-GAAGGAAAAGATGCTAC-GAAGTTGTGGAC-TT-AAAAGGAACAAGATGC
1 GAGTTATGGA-CTTAAAAAGAAAAGATGCCACAG-AGTTGTGGACTTTGAAAA-GAAAAAGATGC
*
85936 CACGGAGTTATGGACCTTGAAAGAAAATATGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGTG
63 CACGGAGTTATGGACCTTGAAAGAAAAGATGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGTG
* * * *
86001 CCACGGAGTTGTGAGTTTAAAAGGAACAAGGTGTCACGAAGTTGTGAACTTTGAAAGAAAAGATG
128 CCACGGAGTTGTGAGCTTAAAAGGAACAAGATGTCACGAAGTTATGAACCTTGAAAGAAAAGATG
* * * ** * * *
86066 CCACAGAGTTGTGGGCTTTGAAGAAAAGGAACAAGGTGTCATAGAGTTATGGACCTTGAAA-GAA
193 CCACAGAGTTGTGGGCTTCGAAGAGAA--AAC-A-GTGCCACGGGGTTGTGGA-CTTAAAAGGAA
86130 -AAGATGCCACG
253 CAAGATGCCACG
* * * * * * *
86141 AAGTTGTGGGCTTTAAAAACCAAAAGGTGCCAC-GAGGTTGTGTTATGGAC-TTAAAAAGAACAA
1 GAGTTATGGAC-TTAAAAA-GAAAAGATGCCACAGA-G-T-TG---TGGACTTTGAAAAGAAAAA
* * * ** * * * *
86204 GGTGCCATGGAGTTATGTATTTTGAAGGAAAAGATGCCATGGAATTATGGG-TCTTGAAAAG-AA
58 GATGCCACGGAGTTATGGACCTTGAAAGAAAAGATGCCACGGAGTTGTGGGCT-TTGAAAAGAAA
* * * * * *
86267 AAAGATGCCACGGAGTTGTGA-CTTAAAA-G-----GTTGTCATGGAGTTGTGGA-CTTAAAAGG
122 AAAG-TGCCACGGAGTTGTGAGCTTAAAAGGAACAAGATGTCACGAAGTTATGAACCTTGAAA-G
* * ** * * * *
86324 AAAAGATGCCACAAAGTTGTAGGCTTTAAAAAGAAAA-AGGTGCCACAGAGTTGTGGATTTAAAA
185 AAAAGATGCCACAGAGTTGTGGGCTTCGAAGAGAAAACA-GTGCCACGGGGTTGTGGACTTAAAA
* * *
86388 AGAACAAGGTGCCACA
249 GGAACAAGATGCCACG
* ** * * ** * * *
86404 GAGTTGTGGACTTTGAAGGAAATGGATGCCATGGAGTTGTGGGCTTTGAAGAGAAAAAGGTGCCA
1 GAGTTATGGACTTAAAAAGAAA-AGATGCCACAGAGTTGTGGACTTTGAAAAGAAAAAGATGCCA
* *
86469 CGGGGTTGTGGA
65 CGGAGTTATGGA
86481 ATTAAAAGGA
Statistics
Matches: 493, Mismatches: 85, Indels: 62
0.77 0.13 0.10
Matches are distributed among these distances:
257 4 0.01
258 25 0.05
260 2 0.00
261 9 0.02
262 35 0.07
263 165 0.33
264 38 0.08
265 12 0.02
266 67 0.14
267 19 0.04
268 18 0.04
269 1 0.00
270 2 0.00
271 1 0.00
272 13 0.03
273 78 0.16
274 4 0.01
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.22
Consensus pattern (264 bp):
GAGTTATGGACTTAAAAAGAAAAGATGCCACAGAGTTGTGGACTTTGAAAAGAAAAAGATGCCAC
GGAGTTATGGACCTTGAAAGAAAAGATGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGTGCCA
CGGAGTTGTGAGCTTAAAAGGAACAAGATGTCACGAAGTTATGAACCTTGAAAGAAAAGATGCCA
CAGAGTTGTGGGCTTCGAAGAGAAAACAGTGCCACGGGGTTGTGGACTTAAAAGGAACAAGATGC
CACG
Found at i:86103 original size:70 final size:70
Alignment explanation
Indices: 86019--86154 Score: 204
Period size: 70 Copynumber: 1.9 Consensus size: 70
86009 TTGTGAGTTT
* *
86019 AAAAGGAACAAGGTGTCACGA-AGTTGTGAACTTTGAAAGAAAAGATGCCAC-AGAGTTGTGGGC
1 AAAAGGAACAAGGTGTCA-GAGAGTTATGAACCTTGAAAGAAAAGATGCCACGA-AGTTGTGGGC
86082 TTTGAAG
64 TTTGAAG
* *
86089 AAAAGGAACAAGGTGTCATAGAGTTATGGACCTTGAAAGAAAAGATGCCACGAAGTTGTGGGCTT
1 AAAAGGAACAAGGTGTCAGAGAGTTATGAACCTTGAAAGAAAAGATGCCACGAAGTTGTGGGCTT
86154 T
66 T
86155 AAAAACCAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
69 1 0.02
70 58 0.97
71 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.29, T:0.22
Consensus pattern (70 bp):
AAAAGGAACAAGGTGTCAGAGAGTTATGAACCTTGAAAGAAAAGATGCCACGAAGTTGTGGGCTT
TGAAG
Found at i:86466 original size:100 final size:99
Alignment explanation
Indices: 86305--86637 Score: 344
Period size: 100 Copynumber: 3.3 Consensus size: 99
86295 GGTTGTCATG
* ** *** *
86305 GAGTTGTGGACTTAAAAGGAAAAGATGCCACAAAGTTGTAGGCTTTAAAAAGAAAAAGGTGCCAC
1 GAGTTATGGACTTTGAAGGAAAAGATGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC
* *
86370 AGAGTTGTGGATTTAAAAAGAACAAGGTGCCACA
66 AGAGTTGTGGAATTAAAAGGAACAAGGTGCCACA
* * * *
86404 GAGTTGTGGACTTTGAAGGAAATGGATGCCATGGAGTTGTGGGCTTTGAAGAGAAAAAGGTGCCA
1 GAGTTATGGACTTTGAAGGAAA-AGATGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCA
* * * *
86469 CGGGGTTGTGGAATTAAAAGGAACAAAGTGCCACG
65 CAGAGTTGTGGAATTAAAAGGAACAAGGTGCCACA
* *
86504 GAGTTATGGACCTTGAAGGAAAAGATGCCTTGGAGTTGTGGGCTTTAAAAAG-AAAAGGTGCCAC
1 GAGTTATGGACTTTGAAGGAAAAGATGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC
* * * * * *
86568 GGGGTTGTGTTGTGGACTTAAAAGGAATAAGGTGCTACT
66 -----AGAGTTGTGGAATTAAAAGGAACAAGGTGCCACA
* * *
86607 GAGTTATAGATTTTGAAGGAAATGGATGCCA
1 GAGTTATGGACTTTGAAGGAAA-AGATGCCA
86638 CTAAGTCGTG
Statistics
Matches: 194, Mismatches: 33, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
98 12 0.06
99 46 0.24
100 84 0.43
103 46 0.24
104 6 0.03
ACGTcount: A:0.34, C:0.11, G:0.32, T:0.23
Consensus pattern (99 bp):
GAGTTATGGACTTTGAAGGAAAAGATGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC
AGAGTTGTGGAATTAAAAGGAACAAGGTGCCACA
Found at i:86724 original size:64 final size:63
Alignment explanation
Indices: 86634--86769 Score: 175
Period size: 64 Copynumber: 2.1 Consensus size: 63
86624 GGAAATGGAT
* * * *
86634 GCCACTAAGTCGTGGACTTAGAAAAAGAACACCACTGAGT-AGTGGACTTTTAAGAAAAAAGGAC
1 GCCACTAAGTCATGGAATTAAAAAAAGAACACCACTGAGTCA-TGGACTTTGAAGAAAAAA-GAC
* * * *
86698 GCCACTGAGTCATGGAATTAAAAAAAGGATACCACTGAGTCATGGACTTTGAAGAAAAAAGAT
1 GCCACTAAGTCATGGAATTAAAAAAAGAACACCACTGAGTCATGGACTTTGAAGAAAAAAGAC
86761 GCCACTAAG
1 GCCACTAAG
86770 CCGTAGACTT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
63 10 0.16
64 51 0.82
65 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (63 bp):
GCCACTAAGTCATGGAATTAAAAAAAGAACACCACTGAGTCATGGACTTTGAAGAAAAAAGAC
Found at i:86787 original size:30 final size:30
Alignment explanation
Indices: 86631--86873 Score: 148
Period size: 30 Copynumber: 7.8 Consensus size: 30
86621 GAAGGAAATG
* * *
86631 GATGCCACTAAGTCGTGGACTTAG-AAAAA
1 GATGCCACTGAGTCGTAGACTTTGAAAAAA
** * *
86660 GAACACCACTGAGTAGTGGACTTTTAAGAAAAAA
1 G-ATGCCACTGAGTCGTAGAC-TTT--GAAAAAA
* * * * *
86694 GGACGCCACTGAGTCATGGA-ATTAAAAAAA
1 -GATGCCACTGAGTCGTAGACTTTGAAAAAA
* * *
86724 GGATACCACTGAGTCATGGACTTTGAAGAAAAAA
1 -GATGCCACTGAGTCGTAGACTTT---GAAAAAA
* *
86758 GATGCCACTAAGCCGTAGACTTTGAAAAAA
1 GATGCCACTGAGTCGTAGACTTTGAAAAAA
*
86788 GATGCCACTGAGTCGTAGACTTTTAAGACAAAA
1 GATGCCACTGAGTCGTAGAC-TTT--GAAAAAA
* * * *
86821 GATGCTACTGAGTTGTAGACTTTTAAAAAT
1 GATGCCACTGAGTCGTAGACTTTGAAAAAA
* *
86851 GATGCCACTGAGTAGTGGACTTT
1 GATGCCACTGAGTCGTAGACTTT
86874 TAGGAAAGGT
Statistics
Matches: 171, Mismatches: 30, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
29 1 0.01
30 88 0.51
31 7 0.04
32 5 0.03
33 43 0.25
34 26 0.15
35 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (30 bp):
GATGCCACTGAGTCGTAGACTTTGAAAAAA
Found at i:86839 original size:33 final size:33
Alignment explanation
Indices: 86665--86880 Score: 180
Period size: 30 Copynumber: 6.8 Consensus size: 33
86655 AAAAAGAACA
* * *
86665 CCACTGAGTAGTGGACTTTTAAGAAAAAAGGACG
1 CCACTGAGTCGTAGACTTTTAAGAAAAAA-GATG
* * * * *
86699 CCACTGAGTCATGGA--ATTAA-AAAAAGGATA
1 CCACTGAGTCGTAGACTTTTAAGAAAAAAGATG
* * *
86729 CCACTGAGTCATGGACTTTGAAGAAAAAAGATG
1 CCACTGAGTCGTAGACTTTTAAGAAAAAAGATG
* *
86762 CCACTAAGCCGTAGAC-TTT--GAAAAAAGATG
1 CCACTGAGTCGTAGACTTTTAAGAAAAAAGATG
*
86792 CCACTGAGTCGTAGACTTTTAAGACAAAAGATG
1 CCACTGAGTCGTAGACTTTTAAGAAAAAAGATG
* * *
86825 CTACTGAGTTGTAGACTTTT---AAAAATGATG
1 CCACTGAGTCGTAGACTTTTAAGAAAAAAGATG
* * *
86855 CCACTGAGTAGTGGACTTTTAGGAAA
1 CCACTGAGTCGTAGACTTTTAAGAAA
86881 GGTGTCACAG
Statistics
Matches: 148, Mismatches: 25, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
30 67 0.45
31 8 0.05
32 9 0.06
33 51 0.34
34 13 0.09
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (33 bp):
CCACTGAGTCGTAGACTTTTAAGAAAAAAGATG
Found at i:86849 original size:127 final size:125
Alignment explanation
Indices: 86604--86873 Score: 274
Period size: 127 Copynumber: 2.1 Consensus size: 125
86594 ATAAGGTGCT
* * * ** * *
86604 ACTGAGTTATAGATTTTGAAGGAAATGGATGCCACTAAGTCGTGGACTTAGAAAAAGAACACCAC
1 ACTGAG-TATGGACTTTGAAGAAAAAAGATGCCACTAAGCCGTAGACTTAGAAAAAGAACACCAC
* *
86669 TGAGTAGTGGACTTTTAAGAAAAAAGGACGCCACTGAGTCATGGAATTAAAAAAAGGATACC
65 TGAGTAGTAGACTTTTAAGAAAAAAGGACGCCACTGAGTCATAGAATT-AAAAAAGGATACC
* **
86731 ACTGAGTCATGGACTTTGAAGAAAAAAGATGCCACTAAGCCGTAGACTTTGAAAAA-AGATGCCA
1 ACTGAGT-ATGGACTTTGAAGAAAAAAGATGCCACTAAGCCGTAGACTTAGAAAAAGA-ACACCA
* * * * ** * * * *
86795 CTGAGTCGTAGACTTTTAAGACAAAA-GATGCTACTGAGTTGTAGACTTTTAAAAATGATGCC
64 CTGAGTAGTAGACTTTTAAGAAAAAAGGACGCCACTGAGTCATAGA-ATTAAAAAAGGATACC
86857 ACTGAGTAGTGGACTTT
1 ACTGAGTA-TGGACTTT
86874 TAGGAAAGGT
Statistics
Matches: 117, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
125 1 0.01
126 41 0.35
127 75 0.64
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (125 bp):
ACTGAGTATGGACTTTGAAGAAAAAAGATGCCACTAAGCCGTAGACTTAGAAAAAGAACACCACT
GAGTAGTAGACTTTTAAGAAAAAAGGACGCCACTGAGTCATAGAATTAAAAAAGGATACC
Found at i:86874 original size:63 final size:63
Alignment explanation
Indices: 86631--86880 Score: 245
Period size: 63 Copynumber: 4.0 Consensus size: 63
86621 GAAGGAAATG
* * * **
86631 GATGCCACTAAGTCGTGGAC-TTAGAAAAAGAACACCACTGAGTAGTGGACTTTTAAGAAAAAA
1 GATGCCACTGAGTCGTAGACTTTAAAAAAAG-ATGCCACTGAGTAGTGGACTTTTAAGAAAAAA
* * * * * *
86694 GGACGCCACTGAGTCATGGA-ATTAAAAAAAGGATACCACTGAGTCA-TGGACTTTGAAGAAAAA
1 -GATGCCACTGAGTCGTAGACTTTAAAAAAA-GATGCCACTGAGT-AGTGGACTTTTAAGAAAAA
86757 A
63 A
* * * * * *
86758 GATGCCACTAAGCCGTAGACTTTGAAAAAAGATGCCACTGAGTCGTAGACTTTTAAGACAAAA
1 GATGCCACTGAGTCGTAGACTTTAAAAAAAGATGCCACTGAGTAGTGGACTTTTAAGAAAAAA
* * * * *
86821 GATGCTACTGAGTTGTAGACTTTTAAAAATGATGCCACTGAGTAGTGGACTTTTAGGAAA
1 GATGCCACTGAGTCGTAGACTTTAAAAAAAGATGCCACTGAGTAGTGGACTTTTAAGAAA
86881 GGTGTCACAG
Statistics
Matches: 153, Mismatches: 28, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
63 91 0.59
64 60 0.39
65 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (63 bp):
GATGCCACTGAGTCGTAGACTTTAAAAAAAGATGCCACTGAGTAGTGGACTTTTAAGAAAAAA
Found at i:91510 original size:70 final size:70
Alignment explanation
Indices: 91433--91586 Score: 229
Period size: 70 Copynumber: 2.2 Consensus size: 70
91423 TCGGAGGAAT
* * * *
91433 GGGGTTGGATTGTCCCCGATGAT-GACAATTTAAACAAGAATAAGATTTGAATCTTGACAAGTTT
1 GGGGTTGGAGTATCCCCGATGATGGA-AATTTAAACAAGAATAAGATTTGAATCTTAACAAATTT
91497 AAAAGC
65 AAAAGC
* *
91503 GGGGTTGGAGTATCCCCGATGATGGAAATTTAAGCGAGAATAAGATTTGAATCTTAACAAATTTA
1 GGGGTTGGAGTATCCCCGATGATGGAAATTTAAACAAGAATAAGATTTGAATCTTAACAAATTTA
91568 AAAGC
66 AAAGC
*
91573 GAGGTTGGAGTATC
1 GGGGTTGGAGTATC
91587 TCCTCGGAGG
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
70 74 0.97
71 2 0.03
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (70 bp):
GGGGTTGGAGTATCCCCGATGATGGAAATTTAAACAAGAATAAGATTTGAATCTTAACAAATTTA
AAAGC
Found at i:93853 original size:20 final size:20
Alignment explanation
Indices: 93828--93902 Score: 125
Period size: 20 Copynumber: 3.8 Consensus size: 20
93818 AAAAAGACAA
93828 AATGTATCGATACATTAAAC
1 AATGTATCGATACATTAAAC
93848 AATGTATCGATACATTAAAC
1 AATGTATCGATACATTAAAC
*
93868 AATGTATCGATACATTCATAC
1 AATGTATCGATACATT-AAAC
93889 -ATGTATCGATACAT
1 AATGTATCGATACAT
93903 CTAGGTACTT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
20 50 0.94
21 3 0.06
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (20 bp):
AATGTATCGATACATTAAAC
Found at i:96872 original size:69 final size:69
Alignment explanation
Indices: 96782--96934 Score: 209
Period size: 69 Copynumber: 2.2 Consensus size: 69
96772 ACAGGAATGA
* **
96782 GGTTGGAGTATCCCCGACAATGATAATTTGGACAA-AATAAGACTTAAATTTTGATGAGTTTAAA
1 GGTTGGAGTATCCCCGACAATGATAATTTAGA-AAGAATAAGACTTAAATTTCAATGAGTTTAAA
*
96846 AACCG
65 AACAG
* * * * *
96851 GGTTGGAATATCCTCGGCAATGATAATTTAGAAAGAATAAGATTTAAATTTCAATGAGTTTACAA
1 GGTTGGAGTATCCCCGACAATGATAATTTAGAAAGAATAAGACTTAAATTTCAATGAGTTTAAAA
96916 ACAG
66 ACAG
96920 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
96935 TCGGAGGAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
68 2 0.03
69 70 0.97
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (69 bp):
GGTTGGAGTATCCCCGACAATGATAATTTAGAAAGAATAAGACTTAAATTTCAATGAGTTTAAAA
ACAG
Found at i:98886 original size:17 final size:17
Alignment explanation
Indices: 98864--98908 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
98854 TTTTCTTTTA
98864 ATTTTTTTATTAAT-TT
1 ATTTTTTTATTAATATT
**
98880 GATTTTTTTAGAAATATT
1 -ATTTTTTTATTAATATT
98898 ATTTTTTTATT
1 ATTTTTTTATT
98909 TTAAATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (17 bp):
ATTTTTTTATTAATATT
Found at i:99840 original size:19 final size:19
Alignment explanation
Indices: 99803--99885 Score: 73
Period size: 18 Copynumber: 4.2 Consensus size: 19
99793 ATATAAAATG
99803 TAAATATATAAATAT-TAAA
1 TAAA-ATATAAATATATAAA
99822 TAAAATATAAATATATAAA
1 TAAAATATAAATATATAAA
99841 -AAAATTAATCAAATATAATTAAA
1 TAAAA-T-AT-AAATAT-A-TAAA
* *
99864 TAAAATGTAAGTATAT-AA
1 TAAAATATAAATATATAAA
99882 TAAA
1 TAAA
99886 TAAATAAAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
18 20 0.36
19 10 0.18
20 3 0.05
21 11 0.20
22 2 0.04
23 5 0.09
24 4 0.07
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAAATATAAATATATAAA
Found at i:99841 original size:15 final size:15
Alignment explanation
Indices: 99792--99891 Score: 63
Period size: 15 Copynumber: 7.1 Consensus size: 15
99782 TCAAAAGAAG
*
99792 TATATAAAATGTAAA
1 TATATAAAATATAAA
99807 TATAT-AAATAT---
1 TATATAAAATATAAA
*
99818 TAAATAAAATATAAA
1 TATATAAAATATAAA
*
99833 TATATAAAA-A-AAT
1 TATATAAAATATAAA
* *
99846 TA-ATCAAATATAAT
1 TATATAAAATATAAA
* * *
99860 TAAATAAAATGTAAG
1 TATATAAAATATAAA
99875 TATATAATAA-ATAAA
1 TATATAA-AATATAAA
99890 TA
1 TA
99892 AAATTGTATG
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
11 4 0.06
12 11 0.17
13 5 0.08
14 11 0.17
15 33 0.50
16 2 0.03
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (15 bp):
TATATAAAATATAAA
Found at i:101179 original size:13 final size:13
Alignment explanation
Indices: 101161--101186 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
101151 TTATAGATTT
101161 ATTTTAATTTAAA
1 ATTTTAATTTAAA
101174 ATTTTAATTTAAA
1 ATTTTAATTTAAA
101187 CATAAAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTTTAATTTAAA
Found at i:101989 original size:20 final size:20
Alignment explanation
Indices: 101923--101991 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
101913 TAAAAGATTT
*
101923 ATTTAATTAAAAAATAAATTTA
1 ATTTAATTAAAAGATAAA--TA
* * * * *
101945 TTTTTTATTAAAAGTTTAATC
1 -ATTTAATTAAAAGATAAATA
101966 ATTTAATTAAAAGATAAATA
1 ATTTAATTAAAAGATAAATA
101986 ATTTAA
1 ATTTAA
101992 AAGTTTAATT
Statistics
Matches: 35, Mismatches: 11, Indels: 3
0.71 0.22 0.06
Matches are distributed among these distances:
20 21 0.60
21 1 0.03
23 13 0.37
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (20 bp):
ATTTAATTAAAAGATAAATA
Found at i:103447 original size:13 final size:16
Alignment explanation
Indices: 103428--103465 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 16
103418 TGCCATTAGT
103428 TTTAAAATAA-ATT-A
1 TTTAAAATAAGATTAA
103442 -TTAAAATAAGATTAA
1 TTTAAAATAAGATTAA
103457 TTTAAAATA
1 TTTAAAATA
103466 TTTTATCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 9 0.43
14 3 0.14
15 1 0.05
16 8 0.38
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
TTTAAAATAAGATTAA
Found at i:103979 original size:2 final size:2
Alignment explanation
Indices: 103972--104065 Score: 102
Period size: 2 Copynumber: 47.0 Consensus size: 2
103962 ATTTACATAC
103972 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * ** * *
104012 AC AC AT GC AT ACT TT TT CAT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT A-T AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT
104056 AT AT AT AT AT
1 AT AT AT AT AT
104066 GTTTATATGT
Statistics
Matches: 81, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
1 2 0.02
2 77 0.95
3 2 0.02
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.47
Consensus pattern (2 bp):
AT
Found at i:104184 original size:22 final size:22
Alignment explanation
Indices: 104159--104252 Score: 75
Period size: 22 Copynumber: 4.2 Consensus size: 22
104149 AATTTAAAAA
**
104159 AAATTAATAATTTTAATAATAT
1 AAATTAATAATAATAATAATAT
*
104181 AAATAAATAATAATAATTTAATAT
1 AAATTAATAATAATAA--TAATAT
* *
104205 ATAATTAACAATAATAAT-ATAAA
1 A-AATTAATAATAATAATAAT-AT
* *
104228 AAATTAA-CATTATAATAATAT
1 AAATTAATAATAATAATAATAT
104249 AAAT
1 AAAT
104253 AAAAATTAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
21 12 0.21
22 23 0.40
23 3 0.05
24 7 0.12
25 13 0.22
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
AAATTAATAATAATAATAATAT
Found at i:104195 original size:28 final size:28
Alignment explanation
Indices: 104142--104223 Score: 82
Period size: 27 Copynumber: 3.0 Consensus size: 28
104132 AACTTTAATT
* *
104142 TTTTATTAATTTAAA-AAA-AATTAATAA
1 TTTTAATAATATAAATAAATAA-TAATAA
104169 TTTTAATAATATAAATAAATAATAATAA
1 TTTTAATAATATAAATAAATAATAATAA
*
104197 -TTTAAT-ATATAATTAACAATAATAATA
1 TTTTAATAATATAAAT-A-AATAATAATA
104224 TAAAAAATTA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
26 7 0.15
27 20 0.42
28 19 0.40
29 2 0.04
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (28 bp):
TTTTAATAATATAAATAAATAATAATAA
Found at i:104247 original size:24 final size:22
Alignment explanation
Indices: 104172--104251 Score: 76
Period size: 22 Copynumber: 3.5 Consensus size: 22
104162 TTAATAATTT
*
104172 TAATAATATAAATAAA-TAATAA
1 TAATAATATAAA-AAATTAACAA
*
104194 TAATTTAATAT--ATAATTAACAA
1 TAA--TAATATAAAAAATTAACAA
104216 TAATAATATAAAAAATTAACATTA
1 TAATAATATAAAAAATTAACA--A
104240 TAATAATATAAA
1 TAATAATATAAA
104252 TAAAAATTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
20 6 0.12
21 2 0.04
22 21 0.44
24 19 0.40
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (22 bp):
TAATAATATAAAAAATTAACAA
Found at i:104291 original size:38 final size:37
Alignment explanation
Indices: 104248--104319 Score: 117
Period size: 38 Copynumber: 1.9 Consensus size: 37
104238 TATAATAATA
104248 TAAATAAAAATTAATAACATTATAATAAATATTAACTC
1 TAAATAAAAATTAATAACATTATAATAAAT-TTAACTC
**
104286 TAAATAAAAATTAATATTATTATAATAAATTTAA
1 TAAATAAAAATTAATAACATTATAATAAATTTAA
104320 TAAATTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
37 4 0.12
38 28 0.88
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (37 bp):
TAAATAAAAATTAATAACATTATAATAAATTTAACTC
Found at i:104523 original size:30 final size:29
Alignment explanation
Indices: 104489--104561 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
104479 CACTATGCGT
*
104489 TAATATTTTTATATTAAATTTTTTAAA-AAA
1 TAATA-TTTTA-ATAAAATTTTTTAAATAAA
104519 TAATATTTTAATAAAATTTTTTAAATAAA
1 TAATATTTTAATAAAATTTTTTAAATAAA
**
104548 TCCTATTTTAATAA
1 TAATATTTTAATAA
104562 TTTATTTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
28 14 0.36
29 20 0.51
30 5 0.13
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.51
Consensus pattern (29 bp):
TAATATTTTAATAAAATTTTTTAAATAAA
Found at i:104547 original size:14 final size:14
Alignment explanation
Indices: 104494--104547 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
104484 TGCGTTAATA
* *
104494 TTTTTATATTAAAT
1 TTTTTAAATAAAAT
*
104508 TTTTTAAAAAATAAT
1 TTTTTAAATAA-AAT
*
104523 ATTTT-AATAAAAT
1 TTTTTAAATAAAAT
104536 TTTTTAAATAAA
1 TTTTTAAATAAA
104548 TCCTATTTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
13 7 0.22
14 18 0.56
15 7 0.22
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTTTAAATAAAAT
Found at i:104569 original size:28 final size:27
Alignment explanation
Indices: 104489--104573 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 27
104479 CACTATGCGT
104489 TAATATTTTTATATTAAATTTTTTAAAAAA
1 TAATA-TTTTA-A-TAAATTTTTTAAAAAA
104519 TAATATTTTAATAAAATTTTTTAAATAAA
1 TAATATTTTAAT-AAATTTTTTAAA-AAA
**
104548 TCCTATTTTAAT-AATTTATTTAAAAA
1 TAATATTTTAATAAATTT-TTTAAAAA
104574 TTAAGAGTAA
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
27 8 0.16
28 19 0.38
29 18 0.36
30 5 0.10
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (27 bp):
TAATATTTTAATAAATTTTTTAAAAAA
Found at i:105661 original size:21 final size:22
Alignment explanation
Indices: 105619--105668 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
105609 AATAATACTT
105619 ATCTT-AAAAATATATTAAAAA
1 ATCTTAAAAAATATATTAAAAA
*
105640 ATTTTAAAAAAT-TA-TAATAAA
1 ATCTTAAAAAATATATTAA-AAA
105661 ATCTTAAA
1 ATCTTAAA
105669 CTATTTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 3 0.12
21 16 0.64
22 6 0.24
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (22 bp):
ATCTTAAAAAATATATTAAAAA
Found at i:106012 original size:26 final size:26
Alignment explanation
Indices: 105946--106013 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
105936 AACGAATAGA
* * *
105946 TATTTATTTTTTTATAATATTTAAATT
1 TATTTA-TTATTTATAAAATTAAAATT
*
105973 TATATAATTA-TTATAAAATTAAAATT
1 TAT-TTATTATTTATAAAATTAAAATT
105999 TATTTATTATTTATA
1 TATTTATTATTTATA
106014 TTACATTTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
25 5 0.15
26 22 0.65
27 5 0.15
28 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (26 bp):
TATTTATTATTTATAAAATTAAAATT
Found at i:106031 original size:25 final size:25
Alignment explanation
Indices: 106003--106062 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
105993 AAAATTTATT
* * *
106003 TATTATTTATA-TTACATTTAATTTA
1 TATTATTTATATTTA-AATTAAATAA
*
106028 TATTATTTAAATTTAAATTAAATAA
1 TATTATTTATATTTAAATTAAATAA
106053 TATTATTTAT
1 TATTATTTAT
106063 TAAATATCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 26 0.90
26 3 0.10
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (25 bp):
TATTATTTATATTTAAATTAAATAA
Found at i:106100 original size:17 final size:17
Alignment explanation
Indices: 106035--106101 Score: 55
Period size: 17 Copynumber: 3.8 Consensus size: 17
106025 TTATATTATT
106035 TAAATTTAAATTAAATA-A
1 TAAATTT-AA-TAAATATA
* * *
106053 TATTATTTATTAAATATC
1 TA-AATTTAATAAATATA
* *
106071 TAAATTCACTAAATATA
1 TAAATTTAATAAATATA
106088 TAAATTTAATAAAT
1 TAAATTTAATAAAT
106102 TAATTTTTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
17 29 0.76
18 5 0.13
19 4 0.11
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAATTTAATAAATATA
Found at i:106207 original size:30 final size:28
Alignment explanation
Indices: 106163--106237 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 28
106153 TAATATAATT
* * *
106163 AATTAATTAAATTTTATAATTAATTTTAT
1 AATT-ATTATATTTTATAAATAATTTTAA
* *
106192 TATTATATATTATTTTAAAAATAATTTTAA
1 AATTAT-TA-TATTTTATAAATAATTTTAA
106222 AATTATTATATTTTAT
1 AATTATTATATTTTAT
106238 TACAATTGAT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
28 9 0.24
29 7 0.19
30 21 0.57
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
AATTATTATATTTTATAAATAATTTTAA
Found at i:107276 original size:19 final size:19
Alignment explanation
Indices: 107252--107289 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
107242 TCAAAATCTC
107252 GCTTGATATTTGGAGGGAT
1 GCTTGATATTTGGAGGGAT
107271 GCTTGATATTTGGAGGGAT
1 GCTTGATATTTGGAGGGAT
107290 TTGGATGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.37, T:0.37
Consensus pattern (19 bp):
GCTTGATATTTGGAGGGAT
Found at i:107528 original size:34 final size:34
Alignment explanation
Indices: 107485--107589 Score: 201
Period size: 34 Copynumber: 3.1 Consensus size: 34
107475 GCAAAAAAAG
107485 ACAATTGTCCTAGATGGATAGCTTAAATTTTGGC
1 ACAATTGTCCTAGATGGATAGCTTAAATTTTGGC
107519 ACAATTGTCCTAGATGGATAGCTTAAATTTTGGC
1 ACAATTGTCCTAGATGGATAGCTTAAATTTTGGC
107553 ACAATTGTCCTAGATGGATAGCTTAAATTTTTGGC
1 ACAATTGTCCTAGATGGATAGCTTAAA-TTTTGGC
107588 AC
1 AC
107590 GTAAATTGCT
Statistics
Matches: 70, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
34 61 0.87
35 9 0.13
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (34 bp):
ACAATTGTCCTAGATGGATAGCTTAAATTTTGGC
Found at i:111549 original size:57 final size:58
Alignment explanation
Indices: 111481--111595 Score: 151
Period size: 58 Copynumber: 2.0 Consensus size: 58
111471 AGCTACCACC
* * * *
111481 GCAAAGCTGAAGAAAAGTCATTG-AAAATTGTTCTCCATAACATGATCGTTATCATTT
1 GCAAAGCTGAAGAAAAGTCACTGAAAAATTATTCTCCATAACACGATCATTATCATTT
* * **
111538 GCAAAGCTGAAGTAGAGTTGCTGAAAAATTATTCTCCATAACACGATCATTATCATTT
1 GCAAAGCTGAAGAAAAGTCACTGAAAAATTATTCTCCATAACACGATCATTATCATTT
111596 AATTAATTTT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
57 18 0.37
58 31 0.63
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.31
Consensus pattern (58 bp):
GCAAAGCTGAAGAAAAGTCACTGAAAAATTATTCTCCATAACACGATCATTATCATTT
Found at i:112267 original size:2 final size:2
Alignment explanation
Indices: 112262--112293 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
112252 TTAGTGTGTG
112262 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
112294 AGATTGCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:112852 original size:3 final size:3
Alignment explanation
Indices: 112844--112881 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
112834 TTGGAACCTC
112844 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
112882 GGTTCCCCCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:113410 original size:41 final size:41
Alignment explanation
Indices: 113290--113420 Score: 147
Period size: 41 Copynumber: 3.2 Consensus size: 41
113280 TCCCTCAGTG
* * *
113290 TAAAAACGCCGCTAATAATAAAAATTTAGCAGTGTTCACCA
1 TAAAAACGCTGCTAATAAGAAAAATTTAGCAGTGTTCATCA
* * *
113331 TAAAAACGCTGCTAATAAGAAAAATTTAACGGGGTTCATCA
1 TAAAAACGCTGCTAATAAGAAAAATTTAGCAGTGTTCATCA
* * * * *
113372 TAAAAATGCTGTTTATAGGAAAAATTTAGCTGTGTTCAT-A
1 TAAAAACGCTGCTAATAAGAAAAATTTAGCAGTGTTCATCA
113412 GTAAAAACG
1 -TAAAAACG
113421 TCGTTAATAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 1 0.01
41 74 0.99
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (41 bp):
TAAAAACGCTGCTAATAAGAAAAATTTAGCAGTGTTCATCA
Found at i:116074 original size:26 final size:26
Alignment explanation
Indices: 116038--116096 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
116028 CAAAATCTAT
* *
116038 AATCTCAGATAAAGTTGAACTTTATC
1 AATCTTAGATAAAGTTAAACTTTATC
116064 AATCTTAGATAAAGTTAAACTTTATC
1 AATCTTAGATAAAGTTAAACTTTATC
116090 AATCTTA
1 AATCTTA
116097 TATCTATAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (26 bp):
AATCTTAGATAAAGTTAAACTTTATC
Found at i:116997 original size:20 final size:20
Alignment explanation
Indices: 116972--117023 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
116962 GACCCAGATG
* *
116972 TATCGATACATTTTTCAATA
1 TATCGATACATTTATAAATA
* *
116992 TATCGATACATGTATAAATG
1 TATCGATACATTTATAAATA
117012 TATCGATACATT
1 TATCGATACATT
117024 ATATCTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (20 bp):
TATCGATACATTTATAAATA
Found at i:117602 original size:41 final size:40
Alignment explanation
Indices: 117541--117622 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 40
117531 AAAAAAAAAA
* * *
117541 ATTCCAAATGTATTGATACATTTGTA-GAATGTATCGATAC
1 ATTCCAAATGTATCGATACA-TTCTACAAATGTATCGATAC
117581 ATTCACAAATGTATCGATACATTCTACAAATGTATCGATAC
1 ATTC-CAAATGTATCGATACATTCTACAAATGTATCGATAC
117622 A
1 A
117623 GGGTCCCAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 8 0.22
41 29 0.78
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (40 bp):
ATTCCAAATGTATCGATACATTCTACAAATGTATCGATAC
Found at i:117611 original size:21 final size:21
Alignment explanation
Indices: 117545--117622 Score: 106
Period size: 21 Copynumber: 3.8 Consensus size: 21
117535 AAAAAAATTC
* *
117545 CAAATGTATTGATACATTTGTA
1 CAAATGTATCGATACA-TTCTA
*
117567 -GAATGTATCGATACATTC-A
1 CAAATGTATCGATACATTCTA
117586 CAAATGTATCGATACATTCTA
1 CAAATGTATCGATACATTCTA
117607 CAAATGTATCGATACA
1 CAAATGTATCGATACA
117623 GGGTCCCAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
19 1 0.02
20 19 0.38
21 30 0.60
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (21 bp):
CAAATGTATCGATACATTCTA
Found at i:117682 original size:19 final size:19
Alignment explanation
Indices: 117658--117712 Score: 101
Period size: 19 Copynumber: 2.9 Consensus size: 19
117648 AATTCAACGA
117658 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
117677 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
117696 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
117713 TTAGCTACTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:117789 original size:33 final size:33
Alignment explanation
Indices: 117732--117798 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
117722 GCCAAGGAAA
*** *
117732 TGTATCGATACATTTTTCTGTGTATCGATGCAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
117765 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
117798 T
1 T
117799 TGGAAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:120360 original size:107 final size:106
Alignment explanation
Indices: 120201--120593 Score: 316
Period size: 107 Copynumber: 3.7 Consensus size: 106
120191 TTCTATAATC
* * *
120201 GGGGATACTCTAACTTCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACTCCGGTTTTA-TTCC-AAAAACACCAATTT-TTCACAATCGGGGATACTCC
120266 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTCGA
63 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTCGA
* * *
120310 GGGGATACTCCAACTCTGGTTTTA-TCGCTAAAACACTAATTTTTCCACAATCGGGGATACTCCA
1 GGGGATACTCCAACTCCGGTTTTATTC-CAAAAACACCAATTTTT-CACAATCGGGGATACTCCA
** * ** * * * ** **
120374 ATCCTGGTTTTATTTTC---AAAACGCCAATTTTCC-TT-TAATC--
64 A-CCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATTTTCGA
* * *
120414 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACTCCGGTTTTA-TTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
* * * *
120479 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
65 CCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTATTTTCGA
* * * * *** * * *
120522 GGGGATACTCCAACCCCGGCTTTATTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAAC
1 GGGGATACTCCAACTCCGGTTTTATTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
120587 CCCGTTA
66 CCCGTTA
120594 TTTTCGAAGG
Statistics
Matches: 218, Mismatches: 50, Indels: 34
0.72 0.17 0.11
Matches are distributed among these distances:
102 2 0.01
103 7 0.03
104 43 0.20
105 16 0.07
106 22 0.10
107 75 0.34
108 27 0.12
109 26 0.12
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (106 bp):
GGGGATACTCCAACTCCGGTTTTATTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTCGA
Found at i:120463 original size:104 final size:103
Alignment explanation
Indices: 120143--120478 Score: 279
Period size: 104 Copynumber: 3.2 Consensus size: 103
120133 ATCAATTCTC
* * * *
120143 CACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTT-CTATAATCGGGGAT
1 CACAATCGAGGATACTCCAA-TCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
* *
120207 ACTCTAACTTCGATTTTATTTCCAAAAAACACCAATTTCTT
65 ACTCCAACTCCGATTTTATTTCC-AAAAACACCAATTT-TT
* * * * ** * * * ** **
120248 CACAATCGGGGATACTCCAACCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATTTTCGA
1 CACAATCGAGGATACTCCAATCCGGTTTTATTTTC---AAAACACCAATTTTCC-TT-TAATC--
* * * *
120310 GGGGATACTCCAACTCTGGTTTTA--TCGCTAAAACACTAATTTTT
59 GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAATTTTT
* *
120354 CCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGA
1 -CACAATCGAGGATACTCCAATCC-GGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGA
*
120419 TACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
64 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
120459 CACAATCGAGGATACTCCAA
1 CACAATCGAGGATACTCCAA
120479 CCTCGTTATT
Statistics
Matches: 174, Mismatches: 41, Indels: 33
0.70 0.17 0.13
Matches are distributed among these distances:
103 6 0.03
104 43 0.25
105 33 0.19
106 21 0.12
107 41 0.24
108 4 0.02
109 26 0.15
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.32
Consensus pattern (103 bp):
CACAATCGAGGATACTCCAATCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
Found at i:120479 original size:52 final size:51
Alignment explanation
Indices: 120143--120479 Score: 193
Period size: 52 Copynumber: 6.4 Consensus size: 51
120133 ATCAATTCTC
* * * * *
120143 CACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAA-TTTT
1 CACAATCGGGGATACTCCAACTCCGGTTTTATTTCCAAAACACCAATTTTT
* * * *
120193 CTATAATCGGGGATACTCTAACTTCGATTTTATTTCCAAAAAACACCAATTTCTT
1 C-ACAATCGGGGATACTCCAACTCCGGTTTTATTTCC--AAAACACCAATTT-TT
* * * ** * *
120248 CACAATCGGGGATACTCCAAC-CCCG-TTAATCATCGGGGATACTCCAACCCCGTTATTT
1 CACAATCGGGGATACTCCAACTCCGGTTTTAT-TTC--CAAAACACCAA-----TT-TTT
* * * ** * *
120306 -TCGA--GGGGATACTCCAACTCTGGTTTTATCGCTAAAACACTAATTTTT
1 CACAATCGGGGATACTCCAACTCCGGTTTTATTTCCAAAACACCAATTTTT
* * *
120354 CCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTC
1 -CACAATCGGGGATACTCCAACTCC-GGTTTTATTTCCAAAACACCAATTTTT
** * *
120406 CTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
1 C-ACAATCGGGGATACTCCAACTCCGGTTTTATTTCC-AAAACACCAATTTTT
*
120459 CACAATCGAGGATACTCCAAC
1 CACAATCGGGGATACTCCAAC
120480 CTCGTTATTT
Statistics
Matches: 213, Mismatches: 50, Indels: 46
0.69 0.16 0.15
Matches are distributed among these distances:
48 3 0.01
49 2 0.01
50 3 0.01
51 32 0.15
52 81 0.38
53 35 0.16
54 26 0.12
55 17 0.08
56 3 0.01
57 6 0.03
58 4 0.02
59 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.32
Consensus pattern (51 bp):
CACAATCGGGGATACTCCAACTCCGGTTTTATTTCCAAAACACCAATTTTT
Found at i:120499 original size:28 final size:28
Alignment explanation
Indices: 120463--120539 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
120453 ATTTTTCACA
* * *
120463 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
120491 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
120519 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
120540 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:120508 original size:212 final size:212
Alignment explanation
Indices: 120141--120535 Score: 616
Period size: 212 Copynumber: 1.9 Consensus size: 212
120131 TTATCAATTC
* *
120141 TCCACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* * *
120206 TACTCTAACTTCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
* *
120271 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTCTGGTTTTATC
131 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACTCTGGTTTTATC
120336 GCTAAAACACTAATTTT
196 GCTAAAACACTAATTTT
* * * *
120353 TCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGAGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
*
120417 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* *
120480 CTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAAC
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAAC
120536 CCCGGCTTTA
Statistics
Matches: 166, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
211 31 0.19
212 101 0.61
213 34 0.20
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (212 bp):
TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACTCTGGTTTTATC
GCTAAAACACTAATTTT
Found at i:120672 original size:77 final size:79
Alignment explanation
Indices: 120493--120693 Score: 230
Period size: 77 Copynumber: 2.6 Consensus size: 79
120483 GTTATTTCAT
* * * *
120493 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGGATTTATTCCCAAAATAT
* * *
120558 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * ** *
120572 TGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAATCCC-GATTT-TTTTC-TAATCA
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGGATTTATTCCCAAAAT-A
120634 TCGATTTCTCACAAC
65 TCGATTTCTCACAAC
* *
120649 CGGGGATACTCCAGCCCCGTTATTTTC-AAGGGAACACTCCAACCC
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGG-ATACTCCAACCC
120694 TGTTATTATC
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
76 8 0.08
77 51 0.49
78 4 0.04
79 41 0.39
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGGATTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:135090 original size:14 final size:14
Alignment explanation
Indices: 135071--135097 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
135061 CAATGTATCA
135071 GAAACGCATGATCT
1 GAAACGCATGATCT
135085 GAAACGCATGATC
1 GAAACGCATGATC
135098 CGAGCCCACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (14 bp):
GAAACGCATGATCT
Found at i:135380 original size:13 final size:12
Alignment explanation
Indices: 135360--135412 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
135350 CGTCCTTTAC
135360 AAAAAAAAACAA
1 AAAAAAAAACAA
135372 AACAAAAAAACCAA
1 AA-AAAAAAA-CAA
* *
135386 GAAAAAATAGCAA
1 -AAAAAAAAACAA
*
135399 AAAAAAAAAGAA
1 AAAAAAAAACAA
135411 AA
1 AA
135413 GGGTCTAGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
12 13 0.39
13 10 0.30
14 8 0.24
15 2 0.06
ACGTcount: A:0.83, C:0.09, G:0.06, T:0.02
Consensus pattern (12 bp):
AAAAAAAAACAA
Done.