Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold75
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1998514
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
File 10 of 12
Found at i:1505082 original size:2 final size:2
Alignment explanation
Indices: 1505069--1505105 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
1505059 ACTAAAAGGA
*
1505069 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1505106 GCAAGTGATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:1505555 original size:18 final size:18
Alignment explanation
Indices: 1505532--1505567 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
1505522 ATATTTGAAA
1505532 TAAATAAAATAA-AATTAT
1 TAAAT-AAATAATAATTAT
1505550 TAAATAAATAATAATTAT
1 TAAATAAATAATAATTAT
1505568 AAAAATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
TAAATAAATAATAATTAT
Found at i:1505570 original size:17 final size:17
Alignment explanation
Indices: 1505531--1505570 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
1505521 CATATTTGAA
1505531 ATAAATAAAATAAAATT
1 ATAAATAAAATAAAATT
1505548 ATTAAAT-AAATAATAATT
1 A-TAAATAAAATAA-AATT
1505566 ATAAA
1 ATAAA
1505571 AATTTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAAATAAAATAAAATT
Found at i:1505954 original size:13 final size:13
Alignment explanation
Indices: 1505938--1505983 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
1505928 AAATCAAAAC
1505938 TTAAA-TTTAAATT
1 TTAAATTTTAAA-T
*
1505951 TTAAATTTTTTAAT
1 TTAAA-TTTTAAAT
1505965 TTAAATTTTAAAT
1 TTAAATTTTAAAT
1505978 TTAAAT
1 TTAAAT
1505984 AAAATATCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 18 0.62
14 6 0.21
15 5 0.17
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTAAATTTTAAAT
Found at i:1506748 original size:19 final size:19
Alignment explanation
Indices: 1506724--1506764 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
1506714 CAGTAATTAT
1506724 ATTTTT-TGTTAATTATTTA
1 ATTTTTATG-TAATTATTTA
*
1506743 ATTTTTATGTAATTTTTTA
1 ATTTTTATGTAATTATTTA
1506762 ATT
1 ATT
1506765 AAATTAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (19 bp):
ATTTTTATGTAATTATTTA
Found at i:1508250 original size:19 final size:19
Alignment explanation
Indices: 1508226--1508270 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
1508216 TGGAAAATAT
1508226 AAAATAAATAA-AACAAA-AC
1 AAAATAAA-AAGAA-AAACAC
1508245 AAAATAAAAAGAAAAACAC
1 AAAATAAAAAGAAAAACAC
1508264 AAAATAA
1 AAAATAA
1508271 TCTTTTAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.80, C:0.09, G:0.02, T:0.09
Consensus pattern (19 bp):
AAAATAAAAAGAAAAACAC
Found at i:1508265 original size:24 final size:26
Alignment explanation
Indices: 1508219--1508267 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
1508209 GTTTACTTGG
*
1508219 AAAATATAAAATAAATAAAACAAAAC
1 AAAATATAAAAGAAATAAAACAAAAC
*
1508245 AAAATA-AAAAGAAA-AACACAAAA
1 AAAATATAAAAGAAATAAAACAAAA
1508268 TAATCTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.38
25 7 0.33
26 6 0.29
ACGTcount: A:0.80, C:0.08, G:0.02, T:0.10
Consensus pattern (26 bp):
AAAATATAAAAGAAATAAAACAAAAC
Found at i:1508326 original size:13 final size:13
Alignment explanation
Indices: 1508304--1508344 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
1508294 CAAAACTTAA
1508304 ATAT-TTATATATT
1 ATATATTATAT-TT
1508317 -TATATTATATTT
1 ATATATTATATTT
1508329 ATATATTAT-TTT
1 ATATATTATATTT
1508341 ATAT
1 ATAT
1508345 TTAAAAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 12 0.46
13 14 0.54
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
ATATATTATATTT
Found at i:1508328 original size:19 final size:18
Alignment explanation
Indices: 1508304--1508347 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
1508294 CAAAACTTAA
1508304 ATATTTATATATTTATATT
1 ATATTTATATA-TTATATT
*
1508323 ATATTTATATATTATTTT
1 ATATTTATATATTATATT
1508341 ATATTTA
1 ATATTTA
1508348 AAAAGTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
ATATTTATATATTATATT
Found at i:1508356 original size:16 final size:17
Alignment explanation
Indices: 1508337--1508368 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
1508327 TTATATATTA
1508337 TTTTATATTTA-AAAAG
1 TTTTATATTTATAAAAG
1508353 TTTTATATTTATAAAA
1 TTTTATATTTATAAAA
1508369 ATTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTTATATTTATAAAAG
Found at i:1509662 original size:17 final size:17
Alignment explanation
Indices: 1509636--1509669 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1509626 TTTTAGGAAA
1509636 TTTTTCTTTTCTTTTTT
1 TTTTTCTTTTCTTTTTT
*
1509653 TTTTTTTTTTCTTTTTT
1 TTTTTCTTTTCTTTTTT
1509670 AGATATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (17 bp):
TTTTTCTTTTCTTTTTT
Found at i:1511310 original size:11 final size:11
Alignment explanation
Indices: 1511289--1511356 Score: 50
Period size: 11 Copynumber: 6.2 Consensus size: 11
1511279 ATATATGATA
1511289 ATTTATATATTT
1 ATTT-TATATTT
1511301 ATTTTATATTT
1 ATTTTATATTT
* *
1511312 A-TATATTTTT
1 ATTTTATATTT
* *
1511322 ATATTATAATT
1 ATTTTATATTT
*
1511333 ATATTTA-ATAT
1 AT-TTTATATTT
*
1511344 ATTTTTTATTT
1 ATTTTATATTT
1511355 AT
1 AT
1511357 ATAGATTTTA
Statistics
Matches: 42, Mismatches: 11, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
10 11 0.26
11 24 0.57
12 7 0.17
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
ATTTTATATTT
Found at i:1511335 original size:19 final size:19
Alignment explanation
Indices: 1511280--1511338 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 19
1511270 TATATATATA
* *
1511280 TATATGATAATTTATATATT
1 TATATTATAA-TTATATTTT
* *
1511300 TATTTTATATTTATATATTTT
1 TATATTATA-AT-TATATTTT
1511321 TATATTATAATTATATTT
1 TATATTATAATTATATTT
1511339 AATATATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
19 7 0.23
20 9 0.29
21 15 0.48
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
TATATTATAATTATATTTT
Found at i:1511359 original size:2 final size:2
Alignment explanation
Indices: 1511239--1511345 Score: 100
Period size: 2 Copynumber: 56.0 Consensus size: 2
1511229 CCATCACATG
1511239 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * *
1511281 AT AT GAT A- AT TT AT AT AT TT AT -T TT AT AT TT AT AT AT TT TT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
1511322 AT AT -T AT A- AT -T AT AT TT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1511346 TTTTTATTTA
Statistics
Matches: 87, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
1 6 0.07
2 79 0.91
3 2 0.02
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (2 bp):
AT
Found at i:1511402 original size:27 final size:27
Alignment explanation
Indices: 1511254--1511402 Score: 89
Period size: 27 Copynumber: 5.5 Consensus size: 27
1511244 TATATATATA
* * *
1511254 TATATATATATATATATATATATA-TATA
1 TATATAT-TTTATATTTATAT-TAGTATT
*
1511282 TATGATAATTTATATATTTATTTTA-TATT
1 TAT-AT-ATTT-TATATTTATATTAGTATT
1511311 TATATATTTT-TATATTATAATTA-TATT
1 TATATATTTTATAT-TTAT-ATTAGTATT
*
1511338 TAATATATTTTTTATTTATA-TAG-ATT
1 T-ATATATTTTATATTTATATTAGTATT
* * *
1511364 T-TAAAATATATATTTATATTATGTATT
1 TATATATTTTATATTTATATTA-GTATT
1511391 TA-ATATTTTATA
1 TATATATTTTATA
1511403 CATATTATAT
Statistics
Matches: 97, Mismatches: 12, Indels: 25
0.72 0.09 0.19
Matches are distributed among these distances:
24 13 0.13
25 5 0.05
26 12 0.12
27 24 0.25
28 18 0.19
29 14 0.14
30 11 0.11
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (27 bp):
TATATATTTTATATTTATATTAGTATT
Found at i:1512542 original size:16 final size:16
Alignment explanation
Indices: 1512517--1512562 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
1512507 CTAATTCAAG
1512517 TTCGGATTCGAGTTTA
1 TTCGGATTCGAGTTTA
* *
1512533 TTCGGGTTCGAGCTCT-
1 TTCGGATTCGAG-TTTA
1512549 TTC-GATTCGAGTTT
1 TTCGGATTCGAGTTT
1512563 TTTCAGGTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 2 0.08
15 7 0.28
16 14 0.56
17 2 0.08
ACGTcount: A:0.13, C:0.17, G:0.26, T:0.43
Consensus pattern (16 bp):
TTCGGATTCGAGTTTA
Found at i:1517469 original size:95 final size:95
Alignment explanation
Indices: 1517341--1517547 Score: 342
Period size: 95 Copynumber: 2.2 Consensus size: 95
1517331 AAAAAAAAAG
* * ** * *
1517341 GGTTGGAGTATCCCTTCGGAGGAATGGGGTTAGAGTGTCCCCGACAATAATATTTTAGGCAAAAA
1 GGTTGGAGTATCCCCTCAGAAAAATGGGGTTAGAATGTCCCCAACAATAATATTTTAGGCAAAAA
1517406 TAGGAAGTATCTTGACAAATTTAAAAACGA
66 TAGGAAGTATCTTGACAAATTTAAAAACGA
* *
1517436 GGTTGGAGTATCCCCTCAGAAAAATGGGGTTAGAATGTCCCTAACAATGATATTTTAGGCAAAAA
1 GGTTGGAGTATCCCCTCAGAAAAATGGGGTTAGAATGTCCCCAACAATAATATTTTAGGCAAAAA
1517501 TAGGAAGTATCTTGACAAATTTAAAAACGA
66 TAGGAAGTATCTTGACAAATTTAAAAACGA
1517531 GGTTGGAGTATCCCCTC
1 GGTTGGAGTATCCCCTC
1517548 TGAAGAATCG
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 104 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.27
Consensus pattern (95 bp):
GGTTGGAGTATCCCCTCAGAAAAATGGGGTTAGAATGTCCCCAACAATAATATTTTAGGCAAAAA
TAGGAAGTATCTTGACAAATTTAAAAACGA
Found at i:1521780 original size:24 final size:23
Alignment explanation
Indices: 1521743--1521788 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
1521733 AAATTGTTGT
*
1521743 CCATTAACAGTTTGGCCTTCTTCA
1 CCATTAACAGTTTGACC-TCTTCA
* *
1521767 CCATTACCATTTTGACCTCTTC
1 CCATTAACAGTTTGACCTCTTC
1521789 CACAACCACC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.20, C:0.33, G:0.09, T:0.39
Consensus pattern (23 bp):
CCATTAACAGTTTGACCTCTTCA
Found at i:1528357 original size:2 final size:2
Alignment explanation
Indices: 1528352--1528379 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1528342 TGTGTATGTG
1528352 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1528380 GGACAGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1528945 original size:22 final size:23
Alignment explanation
Indices: 1528917--1528960 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
1528907 GTTATTTTGG
*
1528917 ATTCGGG-TCAATTGGGTTTAAC
1 ATTCGGGTTAAATTGGGTTTAAC
1528939 ATTCGGGTTAAATTGGGTTTAA
1 ATTCGGGTTAAATTGGGTTTAA
1528961 GTCATAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.39
Consensus pattern (23 bp):
ATTCGGGTTAAATTGGGTTTAAC
Found at i:1528978 original size:19 final size:21
Alignment explanation
Indices: 1528954--1528993 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
1528944 GGTTAAATTG
*
1528954 GGTTTAAGTC-AT-AGGTTTA
1 GGTTTAAATCAATCAGGTTTA
1528973 GGTTTAAATCAATCAGGTTTA
1 GGTTTAAATCAATCAGGTTTA
1528994 ATAGTTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (21 bp):
GGTTTAAATCAATCAGGTTTA
Found at i:1529755 original size:16 final size:16
Alignment explanation
Indices: 1529711--1529762 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
1529701 TGTTTGGATT
1529711 ATTTCGAGTTCAGATC
1 ATTTCGAGTTCAGATC
* *
1529727 ATTTTGAGCTCAGATC
1 ATTTCGAGTTCAGATC
* *
1529743 ATTTCGGGTTCAGATT
1 ATTTCGAGTTCAGATC
1529759 ATTT
1 ATTT
1529763 TTCAGGTTTG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.42
Consensus pattern (16 bp):
ATTTCGAGTTCAGATC
Found at i:1530154 original size:17 final size:17
Alignment explanation
Indices: 1530119--1530164 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
1530109 CAAATATAAA
*
1530119 TTTTAAATATATTATAAT
1 TTTTAAATAT-TTAAAAT
1530137 TATTT-AATATTTAAAAT
1 T-TTTAAATATTTAAAAT
1530154 TTTTAAATATT
1 TTTTAAATATT
1530165 AAATAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 3 0.12
17 13 0.52
18 6 0.24
19 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTTAAATATTTAAAAT
Found at i:1541066 original size:28 final size:30
Alignment explanation
Indices: 1541035--1541094 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
1541025 AAAATGGCAT
** *
1541035 TTATC-TTTTAA-ATTTTTTTAAATATATA
1 TTATCTTTTTAATATTTAATTAAAAATATA
1541063 TTATCTTTTTAATATTTAATTAAAAATATA
1 TTATCTTTTTAATATTTAATTAAAAATATA
1541093 TT
1 TT
1541095 TATATTTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 5 0.19
29 6 0.22
30 16 0.59
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (30 bp):
TTATCTTTTTAATATTTAATTAAAAATATA
Found at i:1541301 original size:11 final size:11
Alignment explanation
Indices: 1541285--1541324 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
1541275 GTATGTTAAA
1541285 TATTTTTAATT
1 TATTTTTAATT
1541296 TATTTTTAATT
1 TATTTTTAATT
*
1541307 TAATTTTATATT
1 TATTTTTA-ATT
*
1541319 AATTTT
1 TATTTT
1541325 AAAATGAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
11 18 0.72
12 7 0.28
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TATTTTTAATT
Found at i:1541539 original size:8 final size:8
Alignment explanation
Indices: 1541513--1541554 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
1541503 AAAAAATATG
1541513 ATTTTTTA
1 ATTTTTTA
*
1541521 TTTTATTTA
1 ATTT-TTTA
1541530 ATTTTTTA
1 ATTTTTTA
*
1541538 ATTTTTAA
1 ATTTTTTA
1541546 ATTTTTTA
1 ATTTTTTA
1541554 A
1 A
1541555 AATAATGATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
ATTTTTTA
Found at i:1545149 original size:129 final size:129
Alignment explanation
Indices: 1544918--1545174 Score: 356
Period size: 129 Copynumber: 2.0 Consensus size: 129
1544908 CAGTTTCTGT
* * * * **
1544918 ATTTATTCATGTGAATGAGTTTGTTCTTGGGATTCTTTCTAATTGGTTCATGGAGTACGTGCAAG
1 ATTTATTCATGTCAATAAGTTTATTCTTGGGATTCTTTCTAATTGGTTCATGAACCACGTGCAAG
** * *
1544983 GCAAGCATTTGTTCTTGGAAAAATTATTTATGCTGCATGTATAGTCTTTGATTTTAACTGGTATG
66 GCAAGCATTTGTTCTCAGAAAAATGATTTATGCTGCATATATAGTC-TTGATTTTAACTGGTATG
* *
1545048 ATTTATTCATG-CAATTAAGTTTATTCTTGGGATTC-TTCTAATTGGTTTATGAACCATGTGCAA
1 ATTTATTCATGTCAA-TAAGTTTATTCTTGGGATTCTTTCTAATTGGTTCATGAACCACGTGCAA
* *
1545111 GGCAAGCATTTGTTCTCAGAAAAATGATTTATGCTGCATATATATTCTTGATTTTAGCTGGTAT
65 GGCAAGCATTTGTTCTCAGAAAAATGATTTATGCTGCATATATAGTCTTGATTTTAACTGGTAT
1545175 TCTCTTGAGA
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
128 16 0.14
129 67 0.60
130 29 0.26
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.43
Consensus pattern (129 bp):
ATTTATTCATGTCAATAAGTTTATTCTTGGGATTCTTTCTAATTGGTTCATGAACCACGTGCAAG
GCAAGCATTTGTTCTCAGAAAAATGATTTATGCTGCATATATAGTCTTGATTTTAACTGGTATG
Found at i:1546886 original size:13 final size:12
Alignment explanation
Indices: 1546868--1546901 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
1546858 TGTATGTTGT
*
1546868 TTTTTTTTTTTA
1 TTTTTTATTTTA
1546880 GTTTTTTATTTTA
1 -TTTTTTATTTTA
1546893 TTTTTTATT
1 TTTTTTATT
1546902 ACAGAACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:1547799 original size:44 final size:45
Alignment explanation
Indices: 1547741--1547826 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
1547731 CAGAATTTGA
*
1547741 ATAAAGATGCTCAAAC-AAAAATAAAAATTAAAAATAAATAATTT
1 ATAAAGATGCTCAAACAAAAAATAAAAATTAAAAAAAAATAATTT
*
1547785 ATAAATATGCTCAAACAAAAAATAAAAATTAAAAAAAAATAA
1 ATAAAGATGCTCAAACAAAAAATAAAAATTAAAAAAAAATAA
1547827 AAATTCATAC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 15 0.38
45 24 0.62
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.22
Consensus pattern (45 bp):
ATAAAGATGCTCAAACAAAAAATAAAAATTAAAAAAAAATAATTT
Found at i:1550005 original size:24 final size:23
Alignment explanation
Indices: 1549960--1550005 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
1549950 TTGAGATCCA
*
1549960 ATCAAAATTCAACTTAAATAAAC
1 ATCAAAATTCAACATAAATAAAC
* *
1549983 ATCAAATTTCCAACATAATTAAA
1 ATCAAAATT-CAACATAAATAAA
1550006 GCACATTCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.28
Consensus pattern (23 bp):
ATCAAAATTCAACATAAATAAAC
Found at i:1554235 original size:19 final size:20
Alignment explanation
Indices: 1554191--1554278 Score: 62
Period size: 22 Copynumber: 4.5 Consensus size: 20
1554181 TTTTTAAAAT
*
1554191 TTAAATTTATTTATTATCGATA
1 TTAAATTTATATATTAT--ATA
1554213 TTAAATTTATATATTAT-TA
1 TTAAATTTATATATTATATA
*
1554232 TTAAAATTTA-A-ATTAAATA
1 TT-AAATTTATATATTATATA
* *
1554251 AT-AA-TT-TATATTAAATA
1 TTAAATTTATATATTATATA
1554268 TTTAAATTTAT
1 -TTAAATTTAT
1554279 TAAAAATTTA
Statistics
Matches: 54, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
16 3 0.06
17 10 0.19
18 5 0.09
19 10 0.19
20 9 0.17
21 1 0.02
22 16 0.30
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (20 bp):
TTAAATTTATATATTATATA
Found at i:1554279 original size:17 final size:17
Alignment explanation
Indices: 1554259--1554294 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
1554249 TAATAATTTA
*
1554259 TATTAAATATTTAAATT
1 TATTAAAAATTTAAATT
1554276 TATTAAAAATTTAAATT
1 TATTAAAAATTTAAATT
1554293 TA
1 TA
1554295 ATAAGTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTAAAAATTTAAATT
Found at i:1554287 original size:30 final size:30
Alignment explanation
Indices: 1554230--1554297 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
1554220 TATATATTAT
*
1554230 TATTAAA-ATTTAAATTAAATAATAATTTA
1 TATTAAATATTTAAATTAAATAAAAATTTA
* *
1554259 TATTAAATATTTAAATTTATTAAAAATTTA
1 TATTAAATATTTAAATTAAATAAAAATTTA
* *
1554289 AATTTAATA
1 TATTAAATA
1554298 AGTGATTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (30 bp):
TATTAAATATTTAAATTAAATAAAAATTTA
Found at i:1554318 original size:47 final size:46
Alignment explanation
Indices: 1554229--1554319 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 46
1554219 TTATATATTA
*
1554229 TTATTAAAATTTAAATTAAATAATAATTTATATTAAATATTTAAAT
1 TTATTAAAATTTAAATTAAATAATAATTAATATTAAATATTTAAAT
* * *
1554275 TTATTAAAAATTTAAATTTAATAAGTGATTAATCTTAAA-ATTTAA
1 TTATT-AAAATTTAAATTAAATAA-TAATTAATATTAAATATTTAA
1554320 GGTACAATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
46 5 0.13
47 23 0.59
48 11 0.28
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (46 bp):
TTATTAAAATTTAAATTAAATAATAATTAATATTAAATATTTAAAT
Found at i:1559408 original size:50 final size:50
Alignment explanation
Indices: 1559268--1559408 Score: 128
Period size: 50 Copynumber: 2.7 Consensus size: 50
1559258 TTTTGAATAG
* * *
1559268 ATTTTTTATTAATTTAAATTGATTAAATTTAAATTAATATTTAATAAATTAAAT
1 ATTTTTTATTAATTTAAA-T-AATAAATATAAA-TAATA-TTAATAAATCAAAT
* * *
1559322 A-TTTTTATTTAAATTT-AATTATAAA-ATATATAAATATTAATATA-CAAAT
1 ATTTTTTA-TT-AATTTAAATAATAAATATAAAT-AATATTAATAAATCAAAT
1559371 ATTTTTTATTAATTATAAATAATAAATATAAATAATAT
1 ATTTTTTATTAATT-TAAATAATAAATATAAATAATAT
1559409 AATTGTACCA
Statistics
Matches: 72, Mismatches: 8, Indels: 18
0.73 0.08 0.18
Matches are distributed among these distances:
48 4 0.06
49 8 0.11
50 27 0.38
51 12 0.17
52 4 0.06
53 7 0.10
54 5 0.07
55 5 0.07
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.49
Consensus pattern (50 bp):
ATTTTTTATTAATTTAAATAATAAATATAAATAATATTAATAAATCAAAT
Found at i:1559774 original size:23 final size:23
Alignment explanation
Indices: 1559729--1559783 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
1559719 TACATATTAG
* **
1559729 TTATAATTTTTTTATGAGTTAAT
1 TTATAATTTTTTTAAGAAATAAT
*
1559752 TTATTATTTTTTTAAGAAATAAT
1 TTATAATTTTTTTAAGAAATAAT
1559775 TGT-TAATTT
1 T-TATAATTT
1559784 GATGTAAAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 25 0.96
24 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (23 bp):
TTATAATTTTTTTAAGAAATAAT
Found at i:1560081 original size:53 final size:53
Alignment explanation
Indices: 1560024--1560131 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
1560014 CCAACGCGTC
*
1560024 ATTTTTGCTTTCATAATTTGTTCTATTATTGAATGTCACATTGATTTATGATT
1 ATTTTTACTTTCATAATTTGTTCTATTATTGAATGTCACATTGATTTATGATT
1560077 ATTTTTACTTTCATAATTTGTTCTATTATTGAATGTCACATTGATTTATGATT
1 ATTTTTACTTTCATAATTTGTTCTATTATTGAATGTCACATTGATTTATGATT
1560130 AT
1 AT
1560132 GAAAGCGAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.26, C:0.09, G:0.10, T:0.55
Consensus pattern (53 bp):
ATTTTTACTTTCATAATTTGTTCTATTATTGAATGTCACATTGATTTATGATT
Found at i:1562741 original size:16 final size:16
Alignment explanation
Indices: 1562722--1562808 Score: 56
Period size: 16 Copynumber: 5.7 Consensus size: 16
1562712 ATCGTTTCAC
1562722 ATTTTAAATTAAAATT
1 ATTTTAAATTAAAATT
*
1562738 ATTTTAGA-T--AATT
1 ATTTTAAATTAAAATT
* * ** *
1562751 ATTATGAATTTGAGTT
1 ATTTTAAATTAAAATT
** *
1562767 ATTTTTTATTTAAATT
1 ATTTTAAATTAAAATT
1562783 ATTTTAAATTAAAATT
1 ATTTTAAATTAAAATT
*
1562799 A-ATTAAATTA
1 ATTTTAAATTA
1562809 TTTAATTTAG
Statistics
Matches: 54, Mismatches: 14, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
13 9 0.17
14 1 0.02
15 9 0.17
16 35 0.65
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.53
Consensus pattern (16 bp):
ATTTTAAATTAAAATT
Found at i:1562912 original size:34 final size:33
Alignment explanation
Indices: 1562845--1562913 Score: 79
Period size: 34 Copynumber: 2.0 Consensus size: 33
1562835 ATTTAAATTA
*
1562845 TTTAAATTTAAATAATTTAAATTAATTTATTAAT
1 TTTAAAATTAAATAATTTAAA-TAATTTATTAAT
1562879 TTTAAAATTAAATTAAATTTAAA-AA-TTATTTAAT
1 TTTAAAATTAAA-T-AATTTAAATAATTTA-TTAAT
1562913 T
1 T
1562914 GAATCAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
33 3 0.10
34 19 0.61
35 1 0.03
36 8 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (33 bp):
TTTAAAATTAAATAATTTAAATAATTTATTAAT
Found at i:1568676 original size:121 final size:121
Alignment explanation
Indices: 1568462--1568704 Score: 477
Period size: 121 Copynumber: 2.0 Consensus size: 121
1568452 TCCAAGTAAT
1568462 ATAGTTTTCGACTACTTTCTTCTCTTGCTTAACCACCCATAATTCAATTGCATAAAGCAATGTTG
1 ATAGTTTTCGACTACTTTCTTCTCTTGCTTAACCACCCATAATTCAATTGCATAAAGCAATGTTG
*
1568527 GCTTTATTGCTATCATGCAGTAGTCTACTTTAGGCTTAAGAGCAATTTACTGTCAC
66 GCTTTAATGCTATCATGCAGTAGTCTACTTTAGGCTTAAGAGCAATTTACTGTCAC
1568583 ATAGTTTTCGACTACTTTCTTCTCTTGCTTAACCACCCATAATTCAATTGCATAAAGCAATGTTG
1 ATAGTTTTCGACTACTTTCTTCTCTTGCTTAACCACCCATAATTCAATTGCATAAAGCAATGTTG
1568648 GCTTTAATGCTATCATGCAGTAGTCTACTTTAGGCTTAAGAGCAATTTACTGTCAC
66 GCTTTAATGCTATCATGCAGTAGTCTACTTTAGGCTTAAGAGCAATTTACTGTCAC
1568704 A
1 A
1568705 CGAGTCAAGA
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
121 121 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.37
Consensus pattern (121 bp):
ATAGTTTTCGACTACTTTCTTCTCTTGCTTAACCACCCATAATTCAATTGCATAAAGCAATGTTG
GCTTTAATGCTATCATGCAGTAGTCTACTTTAGGCTTAAGAGCAATTTACTGTCAC
Found at i:1572501 original size:1 final size:1
Alignment explanation
Indices: 1572495--1572529 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
1572485 AGCCAGTTGC
* *
1572495 TTTTTTTTTTTTTTTTTCTTTTTTTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1572530 AATCTTTGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:1572511 original size:11 final size:11
Alignment explanation
Indices: 1572495--1572529 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
1572485 AGCCAGTTGC
1572495 TTTTTTT-TTT
1 TTTTTTTCTTT
1572505 TTTTTTTCTTT
1 TTTTTTTCTTT
1572516 TTTTTTTCTTT
1 TTTTTTTCTTT
1572527 TTT
1 TTT
1572530 AATCTTTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 7 0.29
11 17 0.71
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:1572517 original size:18 final size:19
Alignment explanation
Indices: 1572494--1572529 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
1572484 CAGCCAGTTG
1572494 CTTTTTTTTTT-TTTTTTT
1 CTTTTTTTTTTCTTTTTTT
1572512 CTTTTTTTTTTCTTTTTT
1 CTTTTTTTTTTCTTTTTT
1572530 AATCTTTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (19 bp):
CTTTTTTTTTTCTTTTTTT
Found at i:1572824 original size:16 final size:16
Alignment explanation
Indices: 1572805--1572838 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1572795 AAAAATTTTC
*
1572805 AAAAAATTATATTTAA
1 AAAAAATAATATTTAA
*
1572821 AAAAAATAATTTTTAA
1 AAAAAATAATATTTAA
1572837 AA
1 AA
1572839 TCAGATTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAAAATAATATTTAA
Found at i:1574751 original size:23 final size:23
Alignment explanation
Indices: 1574721--1574776 Score: 73
Period size: 21 Copynumber: 2.5 Consensus size: 23
1574711 TTTGGAGATA
1574721 TATTGATACATTTAGGCC-AAACG
1 TATTGATACATTT-GGCCAAAACG
*
1574744 TATTGATACA--TGGCCAAAATG
1 TATTGATACATTTGGCCAAAACG
1574765 TATTGATACATT
1 TATTGATACATT
1574777 AGCCTATGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 4 0.14
21 15 0.52
23 10 0.34
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (23 bp):
TATTGATACATTTGGCCAAAACG
Found at i:1576969 original size:240 final size:238
Alignment explanation
Indices: 1576548--1577001 Score: 701
Period size: 240 Copynumber: 1.9 Consensus size: 238
1576538 GGTATTTTCG
* *
1576548 ATAAAAAGGTGAATTTTTGGTTAAAAAATCAAACACTTTATGAAAAAGCTTGAATTTATTATTTT
1 ATAAAAAAGTGAATTTTTGGTTAAAAAATCAAACACTTTATGAAAAAACTTGAATTTATTATTTT
* * *
1576613 AATCCGAGCCTAGTGAGACTCATCATAACTTATGAACCTATTAGGATACTAGTCAAACTCATTTT
66 AATCCGAGCCTAGTAAAACTCATCATAACTTATGAACCTATTAGGATACTAGTCAAACTCATTTC
*
1576678 AAGGCATCTGAATGTCTCAAAAGAGTGGACATAAGGTGAATATAAATTTTTCTGAAGGCTAGAAA
131 AAGGCATCTGAATGTCTCAAAAGAGTGGACATAAGGTGAATATAAATTTTTCTAAAGGCTAGAAA
*
1576743 CAAGGATAGCTTCATGCTACTAGTTAAAATGAGGTTTTTTTAT
196 CAAGGACAGCTTCATGCTACTAGTTAAAATGAGGTTTTTTTAT
* ** * *
1576786 ATAAAAAAGTGAATTTTTTGTTAAAAAATTGAAGACTTTATGAAAAAACTTGAATTTATTTTTTA
1 ATAAAAAAGTGAATTTTTGGTTAAAAAATCAAACACTTTATGAAAAAACTTGAATTTATTATTT-
* * **
1576851 TAATCCGAGTCTAGTAAAACTCATGCATAACTTATGAACCTATTGGGATACTAGTTGAACTCATT
65 TAATCCGAGCCTAGTAAAACTCAT-CATAACTTATGAACCTATTAGGATACTAGTCAAACTCATT
* * * * *
1576916 TCAAGGCATTTGAATGTCTCAAAAGAGTGGACATAGGGTGACTATGAATTTTTCTAAAGGTTAGA
129 TCAAGGCATCTGAATGTCTCAAAAGAGTGGACATAAGGTGAATATAAATTTTTCTAAAGGCTAGA
1576981 AACAAGGACAGCTTCATGCTA
194 AACAAGGACAGCTTCATGCTA
1577002 TTTGGCTTTT
Statistics
Matches: 193, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
238 57 0.30
239 21 0.11
240 115 0.60
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.33
Consensus pattern (238 bp):
ATAAAAAAGTGAATTTTTGGTTAAAAAATCAAACACTTTATGAAAAAACTTGAATTTATTATTTT
AATCCGAGCCTAGTAAAACTCATCATAACTTATGAACCTATTAGGATACTAGTCAAACTCATTTC
AAGGCATCTGAATGTCTCAAAAGAGTGGACATAAGGTGAATATAAATTTTTCTAAAGGCTAGAAA
CAAGGACAGCTTCATGCTACTAGTTAAAATGAGGTTTTTTTAT
Found at i:1578111 original size:67 final size:68
Alignment explanation
Indices: 1577977--1578137 Score: 236
Period size: 67 Copynumber: 2.4 Consensus size: 68
1577967 CAATGGCGAC
*
1577977 AAGAGCAGCTGAGCATAGTACCTAGAGTTTCTACACCACTTACTCTACATGATAGAACCAATAGA
1 AAGAGCAGTTGAGCATAGTACCTAGAGTTTCTACACCACTTACTCTACATGATAGAACCAATAGA
1578042 AAT
66 AAT
* * * * *
1578045 AAGTGCAGTTGAGCATAGTATCTAGAGTTTCTGCACTA-TTACTCTACAT-AGTAGAACCAATGG
1 AAGAGCAGTTGAGCATAGTACCTAGAGTTTCTACACCACTTACTCTACATGA-TAGAACCAATAG
1578108 AAAT
65 AAAT
*
1578112 AAGAGCAGTTGAGTATAGTACCTAGA
1 AAGAGCAGTTGAGCATAGTACCTAGA
1578138 ATTGTCTCCT
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
66 1 0.01
67 49 0.59
68 33 0.40
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (68 bp):
AAGAGCAGTTGAGCATAGTACCTAGAGTTTCTACACCACTTACTCTACATGATAGAACCAATAGA
AAT
Found at i:1585790 original size:34 final size:34
Alignment explanation
Indices: 1585744--1585811 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
1585734 TAAGTGATTG
1585744 AGAGGTTCTATCTTAGCCTTCGAAAAGATAGTGT
1 AGAGGTTCTATCTTAGCCTTCGAAAAGATAGTGT
*
1585778 AGAGGTTTTATCTTAGCCTTCGAAAAGATAGTGT
1 AGAGGTTCTATCTTAGCCTTCGAAAAGATAGTGT
1585812 TGTAAGGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (34 bp):
AGAGGTTCTATCTTAGCCTTCGAAAAGATAGTGT
Found at i:1586240 original size:2 final size:2
Alignment explanation
Indices: 1586233--1586268 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1586223 CATTAGGCTT
1586233 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1586269 GGCCAATTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1588677 original size:13 final size:13
Alignment explanation
Indices: 1588659--1588683 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1588649 CATTTTATGG
1588659 TGTATCGATACAA
1 TGTATCGATACAA
1588672 TGTATCGATACA
1 TGTATCGATACA
1588684 TACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1588699 original size:32 final size:33
Alignment explanation
Indices: 1588636--1588703 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
1588626 CATTACCAGC
**
1588636 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
*
1588669 CAATGTATCGATACATACTGT-GTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
1588701 CAA
1 CAA
1588704 GTTTAGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 14 0.44
33 18 0.56
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACATACTATGGTGTATCGATA
Found at i:1591248 original size:13 final size:13
Alignment explanation
Indices: 1591232--1591268 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
1591222 AATCCCCCTA
* *
1591232 TATCGATATAGTG
1 TATCGATACAATG
1591245 TATCGATACAATG
1 TATCGATACAATG
1591258 TATCGATACAA
1 TATCGATACAA
1591269 AGAATTCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:1600452 original size:14 final size:14
Alignment explanation
Indices: 1600433--1600482 Score: 64
Period size: 15 Copynumber: 3.4 Consensus size: 14
1600423 GGTTCTCAAT
1600433 AAGAAAATAAAAAA
1 AAGAAAATAAAAAA
*
1600447 AAGAAAAAAGAAAAA
1 AAGAAAATA-AAAAA
*
1600462 AAGCAAATAAAAAAA
1 AAGAAAAT-AAAAAA
1600477 AAGAAA
1 AAGAAA
1600483 GATCATCCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 8 0.27
15 21 0.70
16 1 0.03
ACGTcount: A:0.84, C:0.02, G:0.10, T:0.04
Consensus pattern (14 bp):
AAGAAAATAAAAAA
Found at i:1600453 original size:6 final size:7
Alignment explanation
Indices: 1600433--1600482 Score: 50
Period size: 7 Copynumber: 6.9 Consensus size: 7
1600423 GGTTCTCAAT
1600433 AAGAAAA
1 AAGAAAA
1600440 TAA-AAAA
1 -AAGAAAA
1600447 AAGAAAA
1 AAGAAAA
1600454 AAGAAAAA
1 AAG-AAAA
1600462 AAGCAAATA
1 AAG-AAA-A
1600471 AA-AAAA
1 AAGAAAA
1600477 AAGAAA
1 AAGAAA
1600483 GATCATCCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
6 5 0.14
7 17 0.46
8 12 0.32
9 3 0.08
ACGTcount: A:0.84, C:0.02, G:0.10, T:0.04
Consensus pattern (7 bp):
AAGAAAA
Found at i:1606771 original size:37 final size:37
Alignment explanation
Indices: 1606667--1606779 Score: 95
Period size: 38 Copynumber: 3.0 Consensus size: 37
1606657 TTAGAAATTG
* ** * *
1606667 GTTTCAAGTCATGTCACTAATTAAGAATAGTGATTTTT
1 GTTTTAAGTCATACCACTGATTAAGAATAGT-AATTTT
* *
1606705 GTTTTAAGTCATACCACTGGTTAAAAATAGTAATTTT
1 GTTTTAAGTCATACCACTGATTAAGAATAGTAATTTT
* *
1606742 GTTTTAAAGT-GTGCCA-TCGATTAAGAATAGTAACTTTT
1 GTTTT-AAGTCATACCACT-GATTAAGAATAGTAA-TTTT
1606780 ATTTCGATTC
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
36 1 0.02
37 27 0.44
38 33 0.54
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.41
Consensus pattern (37 bp):
GTTTTAAGTCATACCACTGATTAAGAATAGTAATTTT
Found at i:1606963 original size:16 final size:17
Alignment explanation
Indices: 1606925--1606963 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
1606915 CTGATAAACT
1606925 TGATTTCAAAAATAATA
1 TGATTTCAAAAATAATA
*
1606942 TGATTTCAAAATTAATA
1 TGATTTCAAAAATAATA
1606959 T-ATTT
1 TGATTT
1606964 ATTAAATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (17 bp):
TGATTTCAAAAATAATA
Found at i:1612259 original size:6 final size:6
Alignment explanation
Indices: 1612248--1612277 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
1612238 CTTTAATGGG
1612248 TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC
1 TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC
1612278 GATCGCTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (6 bp):
TTTCTC
Found at i:1612644 original size:18 final size:18
Alignment explanation
Indices: 1612621--1612665 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
1612611 TAAAAAAATG
*
1612621 ATATTTTTAACTCAGTCA
1 ATATTTTTAACTCAATCA
*
1612639 ATATTTTAAACTCAATCA
1 ATATTTTTAACTCAATCA
*
1612657 CTATTTTTA
1 ATATTTTTA
1612666 TTTTATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATTTTTAACTCAATCA
Found at i:1612694 original size:20 final size:20
Alignment explanation
Indices: 1612671--1612708 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1612661 TTTTATTTTA
1612671 TTTTTTA-TAATTTTATTAG
1 TTTTTTAGTAATTTTATTAG
*
1612690 TTTTTTAGTATTTTTATTA
1 TTTTTTAGTAATTTTATTA
1612709 ATAAGTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (20 bp):
TTTTTTAGTAATTTTATTAG
Found at i:1613552 original size:28 final size:23
Alignment explanation
Indices: 1613494--1613555 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 23
1613484 TAATTTAAAT
*
1613494 ATTAAATAATATTATAATAATAC
1 ATTACATAATATTATAATAATAC
*
1613517 ATTACATAATATAATATATTAATAC
1 ATTACATAATAT--TATAATAATAC
*
1613542 TATTA-ATCATATTA
1 -ATTACATAATATTA
1613556 CATTGCAAGC
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 13 0.39
25 16 0.48
26 4 0.12
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (23 bp):
ATTACATAATATTATAATAATAC
Found at i:1613553 original size:25 final size:25
Alignment explanation
Indices: 1613494--1613546 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
1613484 TAATTTAAAT
*
1613494 ATTAAATAATAT--TATAATAATAC
1 ATTACATAATATAATATAATAATAC
*
1613517 ATTACATAATATAATATATTAATAC
1 ATTACATAATATAATATAATAATAC
1613542 TATTA
1 -ATTA
1613547 ATCATATTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 11 0.44
25 10 0.40
26 4 0.16
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTACATAATATAATATAATAATAC
Found at i:1614542 original size:20 final size:20
Alignment explanation
Indices: 1614517--1614595 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
1614507 ACTGCCAAGG
1614517 AAATGTATCGATACATTATT
1 AAATGTATCGATACATTATT
*
1614537 AAATGTATTGATACATTATT
1 AAATGTATCGATACATTATT
* **
1614557 AAATGAATCGATACATGCTT
1 AAATGTATCGATACATTATT
*
1614577 ACAATTTTATCGATACATT
1 A-AA-TGTATCGATACATT
1614596 CATGAATTAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
20 36 0.73
21 2 0.04
22 11 0.22
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.39
Consensus pattern (20 bp):
AAATGTATCGATACATTATT
Found at i:1618731 original size:24 final size:24
Alignment explanation
Indices: 1618704--1618751 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
1618694 ATAATTAACC
1618704 ACTCAAATAGTAAACATGTCATGA
1 ACTCAAATAGTAAACATGTCATGA
1618728 ACTCAAATAGTAAACATGTCATGA
1 ACTCAAATAGTAAACATGTCATGA
1618752 TCTAGTCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.25
Consensus pattern (24 bp):
ACTCAAATAGTAAACATGTCATGA
Found at i:1618879 original size:63 final size:63
Alignment explanation
Indices: 1618802--1618929 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
1618792 ATTGTAAAAC
1618802 TTTAATGTGTTATATATATACATATATATATATATATAAACTTAAATTGCAATGAAATATTAA
1 TTTAATGTGTTATATATATACATATATATATATATATAAACTTAAATTGCAATGAAATATTAA
1618865 TTTAATGTGTTATATATATACATATATATATATATATAAACTTAAATTGCAATGAAATATTAA
1 TTTAATGTGTTATATATATACATATATATATATATATAAACTTAAATTGCAATGAAATATTAA
1618928 TT
1 TT
1618930 GGCATTTTTT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.45, C:0.05, G:0.06, T:0.44
Consensus pattern (63 bp):
TTTAATGTGTTATATATATACATATATATATATATATAAACTTAAATTGCAATGAAATATTAA
Found at i:1619520 original size:22 final size:21
Alignment explanation
Indices: 1619475--1619533 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 21
1619465 GAAAGATTGT
* **
1619475 GTATCAATACTTTAAGGTGAA
1 GTATCGATACTTTAAAATGAA
1619496 GTATCGATACTTTAATAATGAA
1 GTATCGATACTTTAA-AATGAA
1619518 GTAAT-GATACTTTAAA
1 GT-ATCGATACTTTAAA
1619534 TTTGGGTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 15 0.45
22 16 0.48
23 2 0.06
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (21 bp):
GTATCGATACTTTAAAATGAA
Found at i:1619864 original size:2 final size:2
Alignment explanation
Indices: 1619857--1619882 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1619847 ATAATCTCTT
1619857 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
1619883 AAACAAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1632098 original size:17 final size:17
Alignment explanation
Indices: 1632078--1632112 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
1632068 AAAAACCAGA
*
1632078 AGAGAAAAAAAATAAAG
1 AGAGAAAAAAAAGAAAG
1632095 AGAGAAAAAAAAGAAAG
1 AGAGAAAAAAAAGAAAG
1632112 A
1 A
1632113 ACGTTCTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (17 bp):
AGAGAAAAAAAAGAAAG
Found at i:1632855 original size:58 final size:58
Alignment explanation
Indices: 1632743--1632855 Score: 147
Period size: 58 Copynumber: 1.9 Consensus size: 58
1632733 CATATCAGGC
* * *
1632743 ACTATTATGTAATTTCATATATTTTAGAATCATTTAATTCATTTTTCATGATTTAGAG
1 ACTATTATGTAATTTCATACATTTTAGAATCATTTAATTCATTTTCCATAATTTAGAG
* * * *
1632801 ACTATTATGTGATTTCATACATTTTAGGATCATTTAAATT-GTTTTCCCTAATTTA
1 ACTATTATGTAATTTCATACATTTTAGAATCATTT-AATTCATTTTCCATAATTTA
1632856 AAAACTTTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
58 43 0.91
59 4 0.09
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.50
Consensus pattern (58 bp):
ACTATTATGTAATTTCATACATTTTAGAATCATTTAATTCATTTTCCATAATTTAGAG
Found at i:1633278 original size:77 final size:75
Alignment explanation
Indices: 1633043--1633307 Score: 202
Period size: 76 Copynumber: 3.5 Consensus size: 75
1633033 AAAGTCTTCA
* * * * *
1633043 TGTTGAAACATGTCCACTAA-GTGTATTTT-GGTAATAGTTCTTTAAAATCGAGTCTAGGGTCAT
1 TGTTGAAACATGTCCATTAAGGT-TATTTTAAGTAATAGTACTTTAAAAT-GAG-CTTGAGTCAT
* *
1633106 GTGAAAATTTTCG
63 GTGGAAACTTTCG
* * * * * * *
1633119 TGTCGAAACATGTCCATTAAAGG-TATTTCAA-TAATAGTACCTTAAAATTAAGTTTAAAATCAT
1 TGTTGAAACATGTCCATT-AAGGTTATTTTAAGTAATAGTACTTTAAAA-TGAGCTT-GAGTCAT
* *
1633182 GTGGGAACCTTT-A
63 GT-GGAAACTTTCG
1633195 TGTTGAAACATGTCCATTAAGGTTATTTTAAGTAAT-GATACTTTAAAACTGAGACTTGAGTCAT
1 TGTTGAAACATGTCCATTAAGGTTATTTTAAGTAATAG-TACTTTAAAA-TGAG-CTTGAGTCAT
1633259 GTGGAAACTTTCG
63 GTGGAAACTTTCG
* * * * *
1633272 TGTTGAAATATATCCATGAAGGGTA-TTTAGGTAATA
1 TGTTGAAACATGTCCATTAAGGTTATTTTAAGTAATA
1633308 TTACATCAAT
Statistics
Matches: 146, Mismatches: 31, Indels: 23
0.73 0.16 0.12
Matches are distributed among these distances:
75 5 0.03
76 85 0.58
77 53 0.36
78 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (75 bp):
TGTTGAAACATGTCCATTAAGGTTATTTTAAGTAATAGTACTTTAAAATGAGCTTGAGTCATGTG
GAAACTTTCG
Found at i:1633344 original size:76 final size:76
Alignment explanation
Indices: 1633092--1633519 Score: 310
Period size: 76 Copynumber: 5.6 Consensus size: 76
1633082 CTTTAAAATC
* * * * * * *
1633092 GAGTCTAGGGTCATGTGAAAATTTTCGTGTCGAAACATGTCCATTAAAGGTATTTCA-ATAATAG
1 GAGTCTAGGGTCATGTGAGAACTTTCATGTCAAAACATATCCATTAAAGGTATTT-AGGTAATAT
* * * *
1633156 TACCTTAAAATT
65 TACATCAATACT
* * *** * ** * *
1633168 AAGTTTAAAATCATGTGGGAACCTTT-ATGTTGAAACATGTCCATT-AAGGTTATTTTAAGTAAT
1 GAGTCTAGGGTCATGTGAGAA-CTTTCATGTCAAAACATATCCATTAAAGG-TA-TTTAGGTAAT
* * *
1633231 GA-TACTTTAAAACT
63 -ATTACATCAATACT
* * * * ** * * *
1633245 GAGACTTGAGTCATGTG-GAAACTTTCGTGTTGAAATATATCCATGAAGGGTATTTAGGTAATAT
1 GAGTCTAGGGTCATGTGAG-AACTTTCATGTCAAAACATATCCATTAAAGGTATTTAGGTAATAT
1633309 TACATCAATACT
65 TACATCAATACT
* *
1633321 GAGTCTAGGGTCATGTGAGAACTTTCATGTCGAAACATATTCATTAAAGGTATTTAGGTAATATT
1 GAGTCTAGGGTCATGTGAGAACTTTCATGTCAAAACATATCCATTAAAGGTATTTAGGTAATATT
1633386 ACATCAATACT
66 ACATCAATACT
* * * ** *
1633397 GAGCCTAGGGTCACGTTAGAACTTTCACATCAAAACATATCCATTAAAGGTATTTAAGTAATATT
1 GAGTCTAGGGTCATGTGAGAACTTTCATGTCAAAACATATCCATTAAAGGTATTTAGGTAATATT
* *
1633462 ACATGAAAAC-
66 ACATCAATACT
* * * * * *
1633472 CATGTCTAGAGTCATGTGAGAACCTTCGTGTCAAAATATATCTATTAA
1 GA-GTCTAGGGTCATGTGAGAACTTTCATGTCAAAACATATCCATTAA
1633520 GGGTCTTTCA
Statistics
Matches: 283, Mismatches: 58, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
75 6 0.02
76 222 0.78
77 51 0.18
78 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.34
Consensus pattern (76 bp):
GAGTCTAGGGTCATGTGAGAACTTTCATGTCAAAACATATCCATTAAAGGTATTTAGGTAATATT
ACATCAATACT
Found at i:1635233 original size:19 final size:17
Alignment explanation
Indices: 1635190--1635233 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
1635180 TTTACTTTTT
*
1635190 AAAATTTTAAATATAAA
1 AAAATATTAAATATAAA
*
1635207 ATAATATTAAGATATACAA
1 AAAATATTAA-ATATA-AA
1635226 AAAATATT
1 AAAATATT
1635234 TATTAATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 5 0.23
19 9 0.41
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAATATTAAATATAAA
Found at i:1635766 original size:27 final size:26
Alignment explanation
Indices: 1635736--1635786 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
1635726 AGAAAAGAGT
* *
1635736 AAAAATCAGTTAAAATTAATTTAATAA
1 AAAAATCAATT-AAATTAAATTAATAA
*
1635763 AAAAATTAATTAAATTAAATTAAT
1 AAAAATCAATTAAATTAAATTAAT
1635787 TTATTTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (26 bp):
AAAAATCAATTAAATTAAATTAATAA
Found at i:1635936 original size:20 final size:21
Alignment explanation
Indices: 1635905--1635947 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
1635895 AATTAATATT
1635905 TAAAATATATTTAATAAAATA
1 TAAAATATATTTAATAAAATA
1635926 TAAAA-ATATTTAATAAAATA
1 TAAAATATATTTAATAAAATA
1635946 TA
1 TA
1635948 TTTAAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
TAAAATATATTTAATAAAATA
Found at i:1643514 original size:3 final size:3
Alignment explanation
Indices: 1643506--1643555 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
1643496 GAGAGGAAAA
1643506 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1643554 AA
1 AA
1643556 AACAAAAGGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:1644833 original size:3 final size:3
Alignment explanation
Indices: 1644827--1644865 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
1644817 CAGGAAGAAG
1644827 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1644866 AAAGAGACCT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:1647301 original size:34 final size:34
Alignment explanation
Indices: 1647258--1647339 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
1647248 GGTTTGGTAA
*
1647258 AAACTACCAAATCACCCATTTAATCAACAATGGT
1 AAACTACCAAATCACCCATTTAATCAACAATGGC
* * * *
1647292 AAACTACCAAATCTCTCATTTAGTCAACAGTGGC
1 AAACTACCAAATCACCCATTTAATCAACAATGGC
* *
1647326 AAACCACTAAATCA
1 AAACTACCAAATCA
1647340 ACAATGGCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.43, C:0.27, G:0.07, T:0.23
Consensus pattern (34 bp):
AAACTACCAAATCACCCATTTAATCAACAATGGC
Found at i:1647347 original size:22 final size:22
Alignment explanation
Indices: 1647315--1647361 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
1647305 TCTCATTTAG
* *
1647315 TCAACAGTGGCAAACCACTAAA
1 TCAACAATGGCAAACCACCAAA
*
1647337 TCAACAATGGCAAACTACCAAA
1 TCAACAATGGCAAACCACCAAA
1647359 TCA
1 TCA
1647362 CCATTTAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.28, G:0.11, T:0.15
Consensus pattern (22 bp):
TCAACAATGGCAAACCACCAAA
Found at i:1653407 original size:10 final size:11
Alignment explanation
Indices: 1653394--1653437 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
1653384 TTTCATATTT
1653394 TTTCTTT-TTC
1 TTTCTTTCTTC
1653404 TTTCTTTCTTC
1 TTTCTTTCTTC
*
1653415 TTCATCTTCCTTC
1 TT--TCTTTCTTC
1653428 TTTCTTTCTT
1 TTTCTTTCTT
1653438 ATCTAACTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
10 7 0.24
11 12 0.41
13 10 0.34
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTCTTTCTTC
Found at i:1654360 original size:19 final size:19
Alignment explanation
Indices: 1654304--1654361 Score: 77
Period size: 18 Copynumber: 3.2 Consensus size: 19
1654294 TTACGTGCAC
1654304 AGTACC-GTATACGTGAAT
1 AGTACCTGTATACGTGAAT
*
1654322 AGTGCCTGTATA--TCGAAT
1 AGTACCTGTATACGT-GAAT
1654340 AGTACCTGTATACGTGAAT
1 AGTACCTGTATACGTGAAT
1654359 AGT
1 AGT
1654362 GCCTCGATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
17 1 0.03
18 20 0.59
19 12 0.35
20 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (19 bp):
AGTACCTGTATACGTGAAT
Found at i:1654378 original size:37 final size:36
Alignment explanation
Indices: 1654304--1654378 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 36
1654294 TTACGTGCAC
* *
1654304 AGTACCGTATACGTGAATAGTGCCTGTATATCGAAT
1 AGTACCGTATACGTGAATAGTGCCTGTATAACCAAT
1654340 AGTACCTGTATACGTGAATAGTGCCTCG-ATAACCAAT
1 AGTACC-GTATACGTGAATAGTGCCT-GTATAACCAAT
1654377 AG
1 AG
1654379 CTCTGATACC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
36 6 0.17
37 28 0.80
38 1 0.03
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (36 bp):
AGTACCGTATACGTGAATAGTGCCTGTATAACCAAT
Found at i:1654701 original size:34 final size:34
Alignment explanation
Indices: 1654663--1654811 Score: 201
Period size: 34 Copynumber: 4.4 Consensus size: 34
1654653 GGTTTGGTAA
1654663 AAACTACCAAATCACCCATTTAATCAACAATGGC
1 AAACTACCAAATCACCCATTTAATCAACAATGGC
* * *
1654697 AAACTGCCAAATC-TCCATTTAGTCAACAATGGC
1 AAACTACCAAATCACCCATTTAATCAACAATGGC
* * *
1654730 AAACCACCAAATTACCTATTTAATCAACAATGGC
1 AAACTACCAAATCACCCATTTAATCAACAATGGC
* * *
1654764 AAACTACCAAATCTCTCATTTAGTCAACAATGGC
1 AAACTACCAAATCACCCATTTAATCAACAATGGC
*
1654798 AAACCACCAAATCA
1 AAACTACCAAATCA
1654812 ACAATGGCAA
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
33 28 0.29
34 69 0.71
ACGTcount: A:0.42, C:0.28, G:0.07, T:0.22
Consensus pattern (34 bp):
AAACTACCAAATCACCCATTTAATCAACAATGGC
Found at i:1654751 original size:67 final size:68
Alignment explanation
Indices: 1654663--1654811 Score: 255
Period size: 67 Copynumber: 2.2 Consensus size: 68
1654653 GGTTTGGTAA
* *
1654663 AAACTACCAAATCACCCATTTAATCAACAATGGCAAACTGCCAAATCTC-CATTTAGTCAACAAT
1 AAACCACCAAATCACCCATTTAATCAACAATGGCAAACTACCAAATCTCTCATTTAGTCAACAAT
1654727 GGC
66 GGC
* *
1654730 AAACCACCAAATTACCTATTTAATCAACAATGGCAAACTACCAAATCTCTCATTTAGTCAACAAT
1 AAACCACCAAATCACCCATTTAATCAACAATGGCAAACTACCAAATCTCTCATTTAGTCAACAAT
1654795 GGC
66 GGC
1654798 AAACCACCAAATCA
1 AAACCACCAAATCA
1654812 ACAATGGCAA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
67 45 0.59
68 31 0.41
ACGTcount: A:0.42, C:0.28, G:0.07, T:0.22
Consensus pattern (68 bp):
AAACCACCAAATCACCCATTTAATCAACAATGGCAAACTACCAAATCTCTCATTTAGTCAACAAT
GGC
Found at i:1654815 original size:22 final size:22
Alignment explanation
Indices: 1654787--1654833 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
1654777 TCTCATTTAG
1654787 TCAACAATGGCAAACCACCAAA
1 TCAACAATGGCAAACCACCAAA
*
1654809 TCAACAATGGCAAACTACCAAA
1 TCAACAATGGCAAACCACCAAA
1654831 TCA
1 TCA
1654834 CCATTTAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.49, C:0.30, G:0.09, T:0.13
Consensus pattern (22 bp):
TCAACAATGGCAAACCACCAAA
Found at i:1658732 original size:57 final size:57
Alignment explanation
Indices: 1658623--1658811 Score: 139
Period size: 57 Copynumber: 3.3 Consensus size: 57
1658613 TATCGTTTGT
* * * * * * * * **
1658623 TATGGCAAAGTGATTTTCCTTATTTTTTTTGCTGTAATCCCTTATGTGATATGTGGA
1 TATGGGAAAGTGATTTCCCATAGTGTTTTAGGTGTAATCCTTTATGCCATATGTGGA
* * * **
1658680 TATGGCGAAA-TGATTTCCCCTAGT-TTTTCATGTGTAATCTTTTATGCCATATGTAAA
1 TATGG-GAAAGTGATTTCCCATAGTGTTTT-AGGTGTAATCCTTTATGCCATATGTGGA
* ** * *
1658737 TATGGTAAAGTGATTTCTTATAGTGTTTTGGGTGTAATCCTTTGTGCCATATGTGGA
1 TATGGGAAAGTGATTTCCCATAGTGTTTTAGGTGTAATCCTTTATGCCATATGTGGA
* **
1658794 TACGACAAAGTGATTTCC
1 TATGGGAAAGTGATTTCC
1658812 TCTGTACATG
Statistics
Matches: 101, Mismatches: 27, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
56 7 0.07
57 87 0.86
58 7 0.07
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (57 bp):
TATGGGAAAGTGATTTCCCATAGTGTTTTAGGTGTAATCCTTTATGCCATATGTGGA
Found at i:1659207 original size:22 final size:20
Alignment explanation
Indices: 1659169--1659208 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
1659159 TTGAGGATTA
1659169 TCATATGTTTGCGTTTGTGT
1 TCATATGTTTGCGTTTGTGT
*
1659189 TCATAATGTCTTGTGTTTGT
1 TCAT-ATGT-TTGCGTTTGT
1659209 TATTTAAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 4 0.24
22 9 0.53
ACGTcount: A:0.12, C:0.10, G:0.23, T:0.55
Consensus pattern (20 bp):
TCATATGTTTGCGTTTGTGT
Found at i:1666442 original size:57 final size:57
Alignment explanation
Indices: 1666292--1666724 Score: 413
Period size: 57 Copynumber: 7.6 Consensus size: 57
1666282 AGATTTTTAA
* * * * * *
1666292 TTCTTAAACTTTTGGTAATGACGAGATAATAATTTTGGATTTTAGCAAATGGTTGAG
1 TTCTTAAGCCTTTGGCAATGGCGAAATAATAATTTTGGACTTTAGCAAATGGTTGAG
* ** * * **
1666349 TT-TTAAACCTTTGGTGATGGTGAGATAATAATTTTGGACCATAGCAAATGGTTGAG
1 TTCTTAAGCCTTTGGCAATGGCGAAATAATAATTTTGGACTTTAGCAAATGGTTGAG
* * *
1666405 TTCTTAAGCCTTTGGCACTGGCCAAATAATAATTTTGGACATTAGCAAATGGTCT-AG
1 TTCTTAAGCCTTTGGCAATGGCGAAATAATAATTTTGGACTTTAGCAAATGGT-TGAG
** ** ** * ** * *
1666462 TTCTCGAGCCTTCAGTGATGACGAAATGGTAATTTTGGACCTTAGCAAATGGTCGAG
1 TTCTTAAGCCTTTGGCAATGGCGAAATAATAATTTTGGACTTTAGCAAATGGTTGAG
* * ** **
1666519 TTCTCAAGCTTTTGGCAATGTTGAAA-AATAATTTTGGACTTTAGCAAATGGTCAAG
1 TTCTTAAGCCTTTGGCAATGGCGAAATAATAATTTTGGACTTTAGCAAATGGTTGAG
* * *
1666575 TTCTCAAGCCTTTGGCAATGGTGAGATAATAATTTTGGACTTTAGCAAATGGTTGAG
1 TTCTTAAGCCTTTGGCAATGGCGAAATAATAATTTTGGACTTTAGCAAATGGTTGAG
* * ** * * **
1666632 TTTTTAAGCTTTTGGCAATGGAAAAATAAAAATTTTGGACTTTAGTAAATGGTCAAG
1 TTCTTAAGCCTTTGGCAATGGCGAAATAATAATTTTGGACTTTAGCAAATGGTTGAG
* * *
1666689 TTCTTAAGCTTTTGGCAATGCCGAGATAATAATTTT
1 TTCTTAAGCCTTTGGCAATGGCGAAATAATAATTTT
1666725 AGAGGCATAA
Statistics
Matches: 310, Mismatches: 62, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
56 98 0.32
57 211 0.68
58 1 0.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (57 bp):
TTCTTAAGCCTTTGGCAATGGCGAAATAATAATTTTGGACTTTAGCAAATGGTTGAG
Found at i:1666608 original size:113 final size:111
Alignment explanation
Indices: 1666292--1666724 Score: 454
Period size: 113 Copynumber: 3.8 Consensus size: 111
1666282 AGATTTTTAA
* * * * ** * *
1666292 TTCTTAAACTTTTGGTAATGACGAGATAATAATTTTGGATTTTAGCAAATGGTTGAGTT-TTAAA
1 TTCTTAAGCTTTTGGCAATG--GA-AAAATAATTTTGGACTTTAGCAAATGGTCAAGTTCTCAAG
** * *
1666356 CCTTTGGTGATGGTGAGATAATAATTTTGGACCATAGCAAATGGTTGAG
63 CCTTTGGCAATGGCGAGATAATAATTTTGGACCTTAGCAAATGGTTGAG
* * * * *
1666405 TTCTTAAGCCTTTGGCACTGGCCAAATAATAATTTTGGACATTAGCAAATGGTCTAGTTCTCGAG
1 TTCTTAAGCTTTTGGCAATGG--AAA-AATAATTTTGGACTTTAGCAAATGGTCAAGTTCTCAAG
** ** * * ** *
1666470 CCTTCAGTGATGACGAAATGGTAATTTTGGACCTTAGCAAATGGTCGAG
63 CCTTTGGCAATGGCGAGATAATAATTTTGGACCTTAGCAAATGGTTGAG
*
1666519 TTCTCAAGCTTTTGGCAATGTTGAAAAATAATTTTGGACTTTAGCAAATGGTCAAGTTCTCAAGC
1 TTCTTAAGCTTTTGGCAATG--GAAAAATAATTTTGGACTTTAGCAAATGGTCAAGTTCTCAAGC
* *
1666584 CTTTGGCAATGGTGAGATAATAATTTTGGACTTTAGCAAATGGTTGAG
64 CTTTGGCAATGGCGAGATAATAATTTTGGACCTTAGCAAATGGTTGAG
* * *
1666632 TTTTTAAGCTTTTGGCAATGGAAAAATAAAAATTTTGGACTTTAGTAAATGGTCAAGTTCTTAAG
1 TTCTTAAGCTTTTGGCAATGGAAAAAT---AATTTTGGACTTTAGCAAATGGTCAAGTTCTCAAG
* *
1666697 CTTTTGGCAATGCCGAGATAATAATTTT
63 CCTTTGGCAATGGCGAGATAATAATTTT
1666725 AGAGGCATAA
Statistics
Matches: 266, Mismatches: 45, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
111 8 0.03
112 1 0.00
113 136 0.51
114 120 0.45
116 1 0.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (111 bp):
TTCTTAAGCTTTTGGCAATGGAAAAATAATTTTGGACTTTAGCAAATGGTCAAGTTCTCAAGCCT
TTGGCAATGGCGAGATAATAATTTTGGACCTTAGCAAATGGTTGAG
Found at i:1666668 original size:170 final size:171
Alignment explanation
Indices: 1666308--1666724 Score: 437
Period size: 170 Copynumber: 2.5 Consensus size: 171
1666298 AACTTTTGGT
* * * * * * **
1666308 AATGACGAGATAATAATTTTGGATTTTAGCAAATGGTTGAGTT-TTAAACCTTTGGTGATGGTGA
1 AATGACAAAATAATAATTTTGGACTTTAGCAAATGGTCGAGTTCTTAAGCTTTTGGCAATGGTGA
* ** * *
1666372 GATAATAATTTTGGACCATAGCAAATGGTTGAGTTCTTAAGCCTTTGGCACTGGCCAAATAATAA
66 GAAAATAATTTTGGACCATAGCAAATGGTCAAGTTCTCAAGCCTTTGGCAATGGCCAAATAATAA
* *
1666437 TTTTGGACATTAGCAAATGGTCTAGTTCTCGAGCCTTCAGT
131 TTTTGGACATTAGCAAATGGTCTAGTTCTCAAGCCTTCAGC
* * ** * * *
1666478 GATGACGAAATGGTAATTTTGGACCTTAGCAAATGGTCGAGTTCTCAAGCTTTTGGCAATGTTGA
1 AATGACAAAATAATAATTTTGGACTTTAGCAAATGGTCGAGTTCTTAAGCTTTTGGCAATGGTGA
** ** *
1666543 -AAAATAATTTTGGACTTTAGCAAATGGTCAAGTTCTCAAGCCTTTGGCAATGGTGAGATAATAA
66 GAAAATAATTTTGGACCATAGCAAATGGTCAAGTTCTCAAGCCTTTGGCAATGGCCAAATAATAA
* * * * **
1666607 TTTTGGACTTTAGCAAATGGT-TGAGTTTTTAAGCTTTTGGC
131 TTTTGGACATTAGCAAATGGTCT-AGTTCTCAAGCCTTCAGC
* * * **
1666648 AATGGA-AAAATAAAAATTTTGGACTTTAGTAAATGGTCAAGTTCTTAAGCTTTTGGCAATGCCG
1 AAT-GACAAAATAATAATTTTGGACTTTAGCAAATGGTCGAGTTCTTAAGCTTTTGGCAATGGTG
*
1666712 AGATAATAATTTT
65 AGAAAATAATTTT
1666725 AGAGGCATAA
Statistics
Matches: 200, Mismatches: 43, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
169 1 0.00
170 172 0.86
171 27 0.14
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (171 bp):
AATGACAAAATAATAATTTTGGACTTTAGCAAATGGTCGAGTTCTTAAGCTTTTGGCAATGGTGA
GAAAATAATTTTGGACCATAGCAAATGGTCAAGTTCTCAAGCCTTTGGCAATGGCCAAATAATAA
TTTTGGACATTAGCAAATGGTCTAGTTCTCAAGCCTTCAGC
Found at i:1667511 original size:13 final size:13
Alignment explanation
Indices: 1667493--1667519 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1667483 ACATTATGCT
1667493 TTGTATCGATACA
1 TTGTATCGATACA
1667506 TTGTATCGATACA
1 TTGTATCGATACA
1667519 T
1 T
1667520 GGACAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1667606 original size:13 final size:13
Alignment explanation
Indices: 1667588--1667637 Score: 58
Period size: 13 Copynumber: 4.3 Consensus size: 13
1667578 TACATAGGAT
1667588 ATTGTATCGATAC
1 ATTGTATCGATAC
1667601 ATTGTATCGATAC
1 ATTGTATCGATAC
1667614 A-TG-AT-G--A-
1 ATTGTATCGATAC
1667621 ATTGTATCGATAC
1 ATTGTATCGATAC
1667634 ATTG
1 ATTG
1667638 CTTATAACGG
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
7 1 0.03
8 3 0.10
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.10
13 18 0.58
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (13 bp):
ATTGTATCGATAC
Found at i:1667613 original size:33 final size:33
Alignment explanation
Indices: 1667569--1667637 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1667559 CTACCACTGT
*
1667569 TTGTATTGATACAT-AGGATATTGTATCGATACA
1 TTGTATCGATACATGAGGA-ATTGTATCGATACA
*
1667602 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGAGGAATTGTATCGATACA
1667635 TTG
1 TTG
1667638 CTTATAACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 30 0.91
34 3 0.09
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (33 bp):
TTGTATCGATACATGAGGAATTGTATCGATACA
Found at i:1669571 original size:64 final size:64
Alignment explanation
Indices: 1669470--1669598 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
1669460 AGAAAAAAGC
1669470 CATGGTAGCAACATGGAGTGATAGCGACACATCCGATGATGATGAAGAAGTCGCAAATCTATGT
1 CATGGTAGCAACATGGAGTGATAGCGACACATCCGATGATGATGAAGAAGTCGCAAATCTATGT
1669534 CATGGTAGCAACATGGAGTGATAGCGACACATCCGATGATGATGAAGAAGTCGCAAATCTATGT
1 CATGGTAGCAACATGGAGTGATAGCGACACATCCGATGATGATGAAGAAGTCGCAAATCTATGT
1669598 C
1 C
1669599 TCATGGCTCA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (64 bp):
CATGGTAGCAACATGGAGTGATAGCGACACATCCGATGATGATGAAGAAGTCGCAAATCTATGT
Found at i:1674044 original size:13 final size:13
Alignment explanation
Indices: 1674026--1674050 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1674016 GGCCAAGACT
1674026 TAGTCCTCACCCC
1 TAGTCCTCACCCC
1674039 TAGTCCTCACCC
1 TAGTCCTCACCC
1674051 TCTCCATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.52, G:0.08, T:0.24
Consensus pattern (13 bp):
TAGTCCTCACCCC
Found at i:1675036 original size:22 final size:22
Alignment explanation
Indices: 1675011--1675052 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
1675001 TTTTTTAAGA
1675011 TTTGACAAAAGGGGAGAAATGC
1 TTTGACAAAAGGGGAGAAATGC
* *
1675033 TTTGATAAAGGGGGAGAAAT
1 TTTGACAAAAGGGGAGAAAT
1675053 ATGTTTATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.05, G:0.33, T:0.21
Consensus pattern (22 bp):
TTTGACAAAAGGGGAGAAATGC
Found at i:1675745 original size:20 final size:20
Alignment explanation
Indices: 1675720--1675773 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
1675710 CTACCACTAT
1675720 TTGTATCGATACAT-AGGACA
1 TTGTATCGATACATGAGGA-A
*
1675740 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGAGGAA
*
1675760 TTATATCGATACAT
1 TTGTATCGATACAT
1675774 TGCTTATAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 28 0.90
21 3 0.10
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATGAGGAA
Found at i:1682085 original size:63 final size:64
Alignment explanation
Indices: 1682009--1682132 Score: 205
Period size: 63 Copynumber: 2.0 Consensus size: 64
1681999 TTTTCAAAGG
* * *
1682009 TTAAGGTGTTGGGCAGACACATGTCTTGCCATAAGTAGGACATCTTTGGCTATTAACGAGAGGT
1 TTAAGGTGTTGGGCAAACACATGTCTTACCATAAGTAGGACACCTTTGGCTATTAACGAGAGGT
*
1682073 TTAAGGTG-TGGGCAAACACATGTCTTACCATGAGTAGGACACCTTTGGCTATTAACGAGA
1 TTAAGGTGTTGGGCAAACACATGTCTTACCATAAGTAGGACACCTTTGGCTATTAACGAGA
1682133 TCTAGCTTGT
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
63 48 0.86
64 8 0.14
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (64 bp):
TTAAGGTGTTGGGCAAACACATGTCTTACCATAAGTAGGACACCTTTGGCTATTAACGAGAGGT
Found at i:1683821 original size:22 final size:21
Alignment explanation
Indices: 1683791--1683831 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
1683781 AAAATTTTTG
*
1683791 GATTGTTTGGGCAAAAATTAA
1 GATTGTTTGAGCAAAAATTAA
*
1683812 GATTGTTTTGAGCTAAAATT
1 GATTG-TTTGAGCAAAAATT
1683832 GAGACCATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.39
Consensus pattern (21 bp):
GATTGTTTGAGCAAAAATTAA
Found at i:1686759 original size:19 final size:19
Alignment explanation
Indices: 1686727--1686764 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
1686717 GTAGCGTAAC
1686727 TCAAGATTGAAAAATCATTT
1 TCAAGATTGAAAAAT-ATTT
*
1686747 TCAA-ATTGTAAAATATTT
1 TCAAGATTGAAAAATATTT
1686765 CCCTTGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 9 0.53
20 4 0.24
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (19 bp):
TCAAGATTGAAAAATATTT
Found at i:1687559 original size:84 final size:85
Alignment explanation
Indices: 1687470--1687657 Score: 252
Period size: 84 Copynumber: 2.2 Consensus size: 85
1687460 AAAATTTTTA
* * *
1687470 TTTTGGGGAAACTCCATCCTTAATATTTTAAGAGGATACTTTAACCTCAACCTTC-AAAAAACTT
1 TTTTGGGGAAACTCCATCCTTAATACTTTAAGAGAATACTCTAACCTCAACCTTCAAAAAAACTT
* *
1687534 AAACTTTTCTTTTGTATAAT
66 AAACTTTTCTATTGCATAAT
* * * *
1687554 TTTTGGGGAAACTCCATCCTTACTCCTTTGAGAGAATACTCTAACCTCAATCTTCAAAAAAACTT
1 TTTTGGGGAAACTCCATCCTTAATACTTTAAGAGAATACTCTAACCTCAACCTTCAAAAAAACTT
* *
1687619 AAATTTTTCTATTGCGTAAT
66 AAACTTTTCTATTGCATAAT
* *
1687639 TTTTGAGAAAACTCCATCC
1 TTTTGGGGAAACTCCATCC
1687658 CTACTTTTTC
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
84 48 0.53
85 42 0.47
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.37
Consensus pattern (85 bp):
TTTTGGGGAAACTCCATCCTTAATACTTTAAGAGAATACTCTAACCTCAACCTTCAAAAAAACTT
AAACTTTTCTATTGCATAAT
Found at i:1687678 original size:85 final size:85
Alignment explanation
Indices: 1687500--1687709 Score: 239
Period size: 85 Copynumber: 2.5 Consensus size: 85
1687490 TAATATTTTA
* * * * * * *
1687500 AGAGGATACTTTAACCTCAACCTTC-AAAAAACTTAAACTTTTCTTTTGTATAATTTTTGGGGAA
1 AGAGGATACTCTAACCTCAATCTTCAAAAAAACTTAAATTTTTCTATTGCATAATTTTTGAGAAA
*
1687564 ACTCCATCCTTACTCCTTTG
66 ACTCCATCCCTACTCCTTTG
* *
1687584 AGAGAATACTCTAACCTCAATCTTCAAAAAAACTTAAATTTTTCTATTGCGTAATTTTTGAGAAA
1 AGAGGATACTCTAACCTCAATCTTCAAAAAAACTTAAATTTTTCTATTGCATAATTTTTGAGAAA
*
1687649 ACTCCATCCCTACT-TTTTCG
66 ACTCCATCCCTACTCCTTT-G
* * *
1687669 AGGGGATACTCTAACC-CTGATCTT-AAAAAAAATTCAAATTT
1 AGAGGATACTCTAACCTC-AATCTTCAAAAAAACTT-AAATTT
1687710 ATCCTCCATA
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
84 35 0.33
85 72 0.67
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (85 bp):
AGAGGATACTCTAACCTCAATCTTCAAAAAAACTTAAATTTTTCTATTGCATAATTTTTGAGAAA
ACTCCATCCCTACTCCTTTG
Found at i:1691857 original size:16 final size:16
Alignment explanation
Indices: 1691836--1691867 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1691826 GAGTTAACCT
1691836 TTCTAATCACAACCAA
1 TTCTAATCACAACCAA
1691852 TTCTAATCACAACCAA
1 TTCTAATCACAACCAA
1691868 CTATCTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (16 bp):
TTCTAATCACAACCAA
Found at i:1700143 original size:13 final size:13
Alignment explanation
Indices: 1700125--1700149 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1700115 TAATTCTTCA
1700125 TGTATCGATACAT
1 TGTATCGATACAT
1700138 TGTATCGATACA
1 TGTATCGATACA
1700150 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1700254 original size:19 final size:19
Alignment explanation
Indices: 1700198--1700306 Score: 97
Period size: 19 Copynumber: 5.9 Consensus size: 19
1700188 ACTGCTAGTT
*
1700198 TCATGTATCGATACAATTA
1 TCATGTATCGATACAATGA
* *
1700217 TGCATGTATCAATATAATGA
1 T-CATGTATCGATACAATGA
1700237 TCATGTATCGATACAATG-
1 TCATGTATCGATACAATGA
*
1700255 T-ATCG-ATACGATTC--TG-
1 TCAT-GTAT-CGATACAATGA
*
1700271 -CATGTATCGATACAAAGA
1 TCATGTATCGATACAATGA
1700289 TCATGTATCGATACAATG
1 TCATGTATCGATACAATG
1700307 TATCGATACA
Statistics
Matches: 72, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
15 6 0.08
16 6 0.08
17 5 0.07
18 7 0.10
19 32 0.44
20 16 0.22
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:1700257 original size:13 final size:13
Alignment explanation
Indices: 1700239--1700263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1700229 TATAATGATC
1700239 ATGTATCGATACA
1 ATGTATCGATACA
1700252 ATGTATCGATAC
1 ATGTATCGATAC
1700264 GATTCTGCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1700278 original size:52 final size:52
Alignment explanation
Indices: 1700200--1700317 Score: 191
Period size: 52 Copynumber: 2.3 Consensus size: 52
1700190 TGCTAGTTTC
* *
1700200 ATGTATCGATACAATTATGCATGTATCAATATAATGATCATGTATCGATACA
1 ATGTATCGATACAATTATGCATGTATCAATACAAAGATCATGTATCGATACA
* * *
1700252 ATGTATCGATACGATTCTGCATGTATCGATACAAAGATCATGTATCGATACA
1 ATGTATCGATACAATTATGCATGTATCAATACAAAGATCATGTATCGATACA
1700304 ATGTATCGATACAA
1 ATGTATCGATACAA
1700318 AGCATAATGT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (52 bp):
ATGTATCGATACAATTATGCATGTATCAATACAAAGATCATGTATCGATACA
Found at i:1700309 original size:13 final size:13
Alignment explanation
Indices: 1700291--1700317 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1700281 TACAAAGATC
1700291 ATGTATCGATACA
1 ATGTATCGATACA
1700304 ATGTATCGATACA
1 ATGTATCGATACA
1700317 A
1 A
1700318 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1700313 original size:32 final size:33
Alignment explanation
Indices: 1700272--1700336 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
1700262 ACGATTCTGC
*
1700272 ATGTATCGATACAAAG-ATCATGTATCGATACA
1 ATGTATCGATACAAAGCATAATGTATCGATACA
1700304 ATGTATCGATACAAAGCATAATGTATCGATACA
1 ATGTATCGATACAAAGCATAATGTATCGATACA
1700337 TCTGGATGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 16 0.52
33 15 0.48
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (33 bp):
ATGTATCGATACAAAGCATAATGTATCGATACA
Found at i:1700328 original size:52 final size:52
Alignment explanation
Indices: 1700200--1700336 Score: 159
Period size: 52 Copynumber: 2.6 Consensus size: 52
1700190 TGCTAGTTTC
*** * * * *
1700200 ATGTATCGATACAATTATGCATGTATCAATATAATGATCATGTATCGATACA
1 ATGTATCGATACAAAGCTGAATGTATCGATACAAAGATCATGTATCGATACA
* ** *
1700252 ATGTATCGATACGATTCTGCATGTATCGATACAAAGATCATGTATCGATACA
1 ATGTATCGATACAAAGCTGAATGTATCGATACAAAGATCATGTATCGATACA
1700304 ATGTATCGATACAAAGCAT-AATGTATCGATACA
1 ATGTATCGATACAAAGC-TGAATGTATCGATACA
1700337 TCTGGATGTT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
52 74 0.99
53 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (52 bp):
ATGTATCGATACAAAGCTGAATGTATCGATACAAAGATCATGTATCGATACA
Found at i:1709160 original size:20 final size:20
Alignment explanation
Indices: 1709126--1709181 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
1709116 ACTGACAGTT
*
1709126 TCATCTATCGATACAATTG-
1 TCATGTATCGATACAATTGA
*
1709145 TGCATGTATTGATACAA-TGA
1 T-CATGTATCGATACAATTGA
1709165 TCATGTATCGATACAAT
1 TCATGTATCGATACAAT
1709182 GTATCGATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (20 bp):
TCATGTATCGATACAATTGA
Found at i:1710053 original size:18 final size:18
Alignment explanation
Indices: 1710030--1710067 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
1710020 ATCCAAGTTT
1710030 TGACCTCTGGATATCAAA
1 TGACCTCTGGATATCAAA
*
1710048 TGACCTTTGGATATCAAA
1 TGACCTCTGGATATCAAA
1710066 TG
1 TG
1710068 GGGTATTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (18 bp):
TGACCTCTGGATATCAAA
Found at i:1712712 original size:20 final size:20
Alignment explanation
Indices: 1712683--1712720 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1712673 TGAAAAAGAT
1712683 AGAATATATCGATACATTAA
1 AGAATATATCGATACATTAA
* *
1712703 AGAATGTATCGATGCATT
1 AGAATATATCGATACATT
1712721 TGGGTAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (20 bp):
AGAATATATCGATACATTAA
Found at i:1717236 original size:36 final size:38
Alignment explanation
Indices: 1717154--1717244 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 38
1717144 ATTACTTTTA
*
1717154 AAATA-TTATATATTTATATAAACTTTAATATATATGTT
1 AAATATTTTTATA-TTATATAAACTTTAATATATATGTT
* *
1717192 AAATATTTTTTTATTATATAAA-TTTTA-ATATAT-TT
1 AAATATTTTTATATTATATAAACTTTAATATATATGTT
*
1717227 ATATAATTTTTATATTAT
1 AAAT-ATTTTTATATTAT
1717245 TTTTATATAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
35 5 0.11
36 18 0.39
37 4 0.09
38 14 0.30
39 5 0.11
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (38 bp):
AAATATTTTTATATTATATAAACTTTAATATATATGTT
Found at i:1717240 original size:11 final size:11
Alignment explanation
Indices: 1717205--1717255 Score: 61
Period size: 11 Copynumber: 4.8 Consensus size: 11
1717195 TATTTTTTTA
*
1717205 TTATATAAATT
1 TTATATAATTT
*
1717216 TTA-AT-ATAT
1 TTATATAATTT
1717225 TTATATAATTT
1 TTATATAATTT
*
1717236 TTATATTATTT
1 TTATATAATTT
1717247 TTATATAAT
1 TTATATAAT
1717256 ATTATATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
9 5 0.15
10 4 0.12
11 24 0.73
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTATATAATTT
Found at i:1717265 original size:29 final size:31
Alignment explanation
Indices: 1717234--1717299 Score: 86
Period size: 29 Copynumber: 2.2 Consensus size: 31
1717224 TTTATATAAT
1717234 TTTTATATT-A-TTTTTATATAATA-TTATA
1 TTTTATATTAATTTTTTATATAATATTTATA
*
1717262 TTTTA-ATTAATTTTTTATATTATATTTATAA
1 TTTTATATTAATTTTTTATATAATATTTAT-A
1717293 TTTTATA
1 TTTTATA
1717300 CCATATAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 3 0.09
28 6 0.19
29 12 0.38
30 4 0.12
31 6 0.19
32 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (31 bp):
TTTTATATTAATTTTTTATATAATATTTATA
Found at i:1720843 original size:15 final size:15
Alignment explanation
Indices: 1720816--1720859 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 15
1720806 AAAAAAATTA
1720816 AAATATAATATATAT
1 AAATATAATATATAT
*
1720831 ATATAT-ATA-ATAT
1 AAATATAATATATAT
1720844 AAAT-TAATATAT-T
1 AAATATAATATATAT
1720857 AAA
1 AAA
1720860 ATTTATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 1 0.04
13 14 0.56
14 5 0.20
15 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AAATATAATATATAT
Found at i:1720867 original size:14 final size:15
Alignment explanation
Indices: 1720818--1720877 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
1720808 AAAAATTAAA
*
1720818 ATATAATATATATATAT
1 ATATAATATA-A-ATTT
*
1720835 ATATAATATAAATTA
1 ATATAATATAAATTT
*
1720850 ATATATTA-AAATTT
1 ATATAATATAAATTT
*
1720864 ATATAAAATAAATT
1 ATATAATATAAATT
1720878 ATAAATTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
14 11 0.31
15 14 0.39
16 1 0.03
17 10 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATAATATAAATTT
Found at i:1723775 original size:29 final size:29
Alignment explanation
Indices: 1723729--1723792 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
1723719 CATGTCCATT
1723729 ATAATTGACAACCATTCTTTCCAAAACAA
1 ATAATTGACAACCATTCTTTCCAAAACAA
* *
1723758 ATAATTGACAGCCTTTCTTTCCAAAACAA
1 ATAATTGACAACCATTCTTTCCAAAACAA
1723787 ATAATT
1 ATAATT
1723793 CCTTGCTTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.42, C:0.22, G:0.05, T:0.31
Consensus pattern (29 bp):
ATAATTGACAACCATTCTTTCCAAAACAA
Found at i:1723796 original size:24 final size:25
Alignment explanation
Indices: 1723743--1723805 Score: 65
Period size: 29 Copynumber: 2.4 Consensus size: 25
1723733 TTGACAACCA
1723743 TTCTTTCCAAAACAAATAATTGACAGCCT
1 TTCTTTCCAAAACAAATAATT---A-CCT
1723772 TTCTTTCCAAAACAAATAATT-CCT
1 TTCTTTCCAAAACAAATAATTACCT
* *
1723796 TGCTTACCAA
1 TTCTTTCCAA
1723806 CTATAAATAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 11 0.34
29 21 0.66
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (25 bp):
TTCTTTCCAAAACAAATAATTACCT
Found at i:1731433 original size:20 final size:21
Alignment explanation
Indices: 1731400--1731470 Score: 56
Period size: 22 Copynumber: 3.4 Consensus size: 21
1731390 TACGTCTTAA
1731400 AATATTTTATATAT-TATTTT
1 AATATTTTATATATATATTTT
**
1731420 AATATTTT-TAATATATATTAA
1 AATATTTTAT-ATATATATTTT
* * * *
1731441 AATTATTTCATAAATAAATTAT
1 AA-TATTTTATATATATATTTT
1731463 AATATTTT
1 AATATTTT
1731471 TTTACAATAT
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
19 1 0.03
20 12 0.30
21 11 0.28
22 15 0.38
23 1 0.03
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (21 bp):
AATATTTTATATATATATTTT
Found at i:1732125 original size:96 final size:96
Alignment explanation
Indices: 1731961--1732145 Score: 307
Period size: 96 Copynumber: 1.9 Consensus size: 96
1731951 ACATCGTGTC
* * * **
1731961 CAGCTTGCTACTCTGCATTATTCTACGTTCAGTTTCACCAGTCCAGCTCAAGGGTAGCAGTCGCA
1 CAGCTTGCTACCCTGCATCATTCCACGTTCACATTCACCAGTCCAGCTCAAGGGTAGCAGTCGCA
1732026 CTAGCAATTGTGAAAACATCACCTTCTAGCT
66 CTAGCAATTGTGAAAACATCACCTTCTAGCT
*
1732057 CAGCTTGGTACCCTGCATCATTCCACGTTCACATTCACCAGTCCAGCTCAAGGGTAGCAGTCGCA
1 CAGCTTGCTACCCTGCATCATTCCACGTTCACATTCACCAGTCCAGCTCAAGGGTAGCAGTCGCA
*
1732122 CTAGCAATTGTGAAAACATTACCT
66 CTAGCAATTGTGAAAACATCACCT
1732146 AACAACTCCG
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 82 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (96 bp):
CAGCTTGCTACCCTGCATCATTCCACGTTCACATTCACCAGTCCAGCTCAAGGGTAGCAGTCGCA
CTAGCAATTGTGAAAACATCACCTTCTAGCT
Done.