Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold753
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6415
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Found at i:1549 original size:471 final size:473
Alignment explanation
Indices: 1--6415 Score: 8935
Period size: 466 Copynumber: 13.7 Consensus size: 473
*
1 ATTTATCCTACGGAAAAGAATGGTGTT-TAGTGCGTAATCACAAAAATGAAAGAAGATTATTACT
1 ATTTATCCTAC-GAAAAGAAT-GTGTTATAGTGCGTAATCAC-AAAATGAATGAAGATTATTACT
*
65 AGAACCC-TTTTTGTCTCATTTGAGGCATAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
63 AGAACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
129 CATTCTTGCGAATCCAAAGCATCAATTTTCGTCTATCCTAAT-AGTTTGACTATGTT-ATAGTGC
128 CATTCTTGCGAATCCAAAGCATCAA-TTTCGTCTATCCTAATGAG-TTGACTATGTTGATAGTGC
192 CTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTT
191 CTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTT
*
257 TGATTCTAAC-AAAACGGTAGAGA-GAAGCCTTTTCTTACAACACCAAAGCATCAATATCATTTA
256 TGATTCTAACAAAAACGGTAGAGAGGAAACCTTTTCTTACAACACCAAAGCATCAATATCATTTA
320 TCCTAATGAAGGGATTGGGTTCTAGTTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAG
321 TCCTAATGAAGGGATTGGGTTC----TTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAG
385 AATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAAGGAAAAATA-GGTAAAGAAATG
382 AATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTT-AAGG-AAAATAGGGTAAAGAAATG
*
449 ATTT-CATGC-AAAGAAATCATCAATACGC
445 ATTTCCATGCAAAAGAAATCATCAATA-TC
* *
477 ATTTATCCAACTGAAAAGATTGT-TTATAGTGGCGTAATCACAAAATGAATGAAGATTATTACTA
1 ATTTATCCTAC-GAAAAGAATGTGTTATAGT-GCGTAATCACAAAATGAATGAAGATTATTACTA
*
541 GAACCCTTTTTGTGTCTCA-TTGAGGCACAAACTTAGACTTTACAAAAATTGGAGTGAAGAAAT-
64 GAACCCTTTTT-TGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
* *
604 CATTCTTGCGAATCTAAAGCTTCAATTTC-T-TGATCCTAATGAGTTTGGACTATGTTGATAGTG
128 CATTCTTGCGAATCCAAAGCATCAATTTCGTCT-ATCCTAATGAG-TT-GACTATGTTGATAGTG
* *
667 CCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTA-TGAAGAGGCAAACT
190 CCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACT
*
731 TTGATTCTAACAAAAACGGTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATCAAATATCATT
255 TTGATTCTAACAAAAACGGTAGAGAGGAAACCTTTTCTTACAACACCAAAGCATC-AATATCATT
796 TATCCTAATGAAGGGATTGGGTTCTTAG-TCC-AATC-TGAAAAGAGTGGAGACAGTTACGAGAA
319 TATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAA
* *
858 TCGATAATTGTCATAAGTTCAGGGATG---GTTT-TTTTATGGAAAATAGGGTAAAGAAATGATT
384 TCGATAATTGTCATAA-TTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATT
* *
919 CCCATGCAAAAGAAAGTCAT-GA-ATC
448 TCCATGCAAAAGAAA-TCATCAATATC
* * * * * *
944 ATTTATCATAACGGAAAGAATGTATTTATAGTGCCTAATCACAAAATTAATGAAGATCGA-TACT
1 ATTTATCCT-ACGAAAAGAATGT-GTTATAGTGCGTAATCACAAAATGAATGAAGAT-TATTACT
* * * *
1008 AGAATCC-TGTTTGTCTCATTTAAGGCATAAACTTAGACTTTACAGAAATTGGAG-GAAGAAATC
63 AGAACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
*
1071 CATTCTTGCGAATCC-AAGCATCAATTTCGTCTATCATAATGAGTTTGACTATGTTGATAGTGCC
128 CATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAG-TTGACTATGTTGATAGTGCC
* *
1135 TAATCCTGAAAAGATTAGGGATGA-TATGACTATTCATGTTTGTCTTATTTAAGAGGC-AAC-TT
192 TAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTTT
* *
1197 GATTCTAACAAAAACGGTAGAG-GCGAAACACTTTTCTTGCGACACCAAAGCATCAAGATCAATC
257 GATTCTAACAAAAACGGTAGAGAG-GAAAC-CTTTTCTTACAACACCAAAGCATC-A-AT--ATC
1261 ATTTATCCTAATGAAGGGA-TGGGTTCTTAG-TCCAAATCTTGAAAAGAGTGGAGACAAGTTACG
316 ATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGAC-AGTTACG
*
1324 AGAATCGATAATTGTCATAATTGAGGGATGAATTTTT-TTTTAAGGAAAATAGGGT-AAGAAATG
380 AGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATG
1387 ATTTCCATGCAAAAGAAATCATCAA-ATC
445 ATTTCCATGCAAAAGAAATCATCAATATC
1415 ATTTATCCTACTGAAAAGAATGTGTTATAGTGCGT-ATCACAAAATGAATGAAGA-TATTACTAG
1 ATTTATCCTAC-GAAAAGAATGTGTTATAGTGCGTAATCACAAAATGAATGAAGATTATTACTAG
*
1478 AACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTAACAGAAATGGGAGTGAAGAAATCC
65 AACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTT-ACAGAAATTGGAGTGAAGAAATCC
*
1543 ATTCTTGCGAA-CCAAAGCATCAATTTCGTCTATCCTAATGGAGTTGACTAGGTTGATAGTGCCC
129 ATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAT-GAGTTGACTATGTTGATAGTG-CC
1607 T-ATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTGTTGTCTTATTTAAGAGCC-AACTT
192 TAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGT-TTGTCTTATTTAAGAGCCAAACTT
*
1670 TGATTCTAACAAAAACGGTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATC-ATAT-ATTTA
256 TGATTCTAACAAAAACGGTAGAGAGGAAACCTTTTCTTACAACACCAAAGCATCAATATCATTTA
*
1733 TCCTAAGGAAGGGATTGGGTTC-TAGTTCC-AATCTTG-AAAGAGTGGAGACCAGTTACGAGAAT
321 TCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGA-CAGTTACGAGAAT
* *
1795 CGATAATTGTCATAATTCAGGGATGAATTTTTTATTTTATGGAAAATAGGGTAAAGAAATGATTC
385 CGATAATTGTCATAATTCAGGGATGAA-TTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTT
*
1860 CCATGC-AAAGAAAGTCATGAATATC
449 CCATGCAAAAGAAA-TCATCAATATC
* * * * * *
1885 ATTTATCATAACGGAAAGAATGTATTTATAGTGCCTAATCACAAAATTAATGAAGATCGA-TACT
1 ATTTATCCT-ACGAAAAGAATGT-GTTATAGTGCGTAATCACAAAATGAATGAAGAT-TATTACT
* * *
1949 AGAATCCTTGTTTGTCCTCATTTAAGGCACAAACTTAGACTTTACCAGAAATTGGAGTGAAGAAA
63 AGAACCCTTTTTTGT-CTCATTTGAGGCACAAACTTAGACTTTA-CAGAAATTGGAGTGAAGAAA
2014 TCCATTC-TGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGAATAGTG
126 TCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTG-ATAGTG
* *
2078 CCTAATCCTGAAAAGATTAGGGA-TAGTATGACTATTCATGTTTGTCTTATTAAAGAGGCAAACT
190 CCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACT
* * *
2142 TTGA-TC-AAC-AAAACAGTAGAG-GCGAAACCTTTTCTTGCGACACC-AAGCATCAATATCATT
255 TTGATTCTAACAAAAACGGTAGAGAG-GAAACCTTTTCTTACAACACCAAAGCATCAATATCATT
* * * *
2202 TATCCTAAAGAAGGGATTTGGGTTC-TAGTTCCAAATCTTGAAAAGAATGGAGATAGTCACGAGA
319 TATCCTAATGAAGGGA-TTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGA
*
2266 ATCGATAA-TGTCAGAA-TCAGGGATGAA-TTTTATTTTAAGGAAAATA-GGTAAAGAAATGATT
383 ATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATT
2327 TCCATGCAAAAGAAAATCATCAATATC
448 TCCATGCAAAAG-AAATCATCAATATC
*
2354 A--TATCCTACGAAAAGAATG-GTTTATAGTGCGTAATCACAAAATGAATGAAGAGTTATTATTA
1 ATTTATCCTACGAAAAGAATGTG-TTATAGTGCGTAATCACAAAATGAATGAAGA-TTATTACTA
*
2416 GAACACTTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
64 GAAC-CCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
* *
2481 CATTCTTGCGAATCCAAAACATCAATTT-GTCTATCCCAATGAGTTGACTATGTTGATAG-GCCT
128 CATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCT
*
2544 AATCCTG-AAAGATGAGGGATTAGTATGACTA-TCATGTTTGTCTTATTTAAGAGCCAAACTTTG
193 AATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTTTG
*
2607 AATTCTAACAAAAAACGGTAGAGAGGAAGCC-TTTCTTACAACACCAAAGCATCAATATCATTTA
258 -ATTCTAAC-AAAAACGGTAGAGAGGAAACCTTTTCTTACAACACCAAAGCATCAATATCATTTA
2671 TCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATC
321 TCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATC
* * *
2736 GATAATTGTCATAATTCAAGGATGAATTTTTATTTTATGGAAAA-AGGGT-AAGAAATGATTCCC
386 GATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTTCC
* *
2799 ATCCAAAAGAAAGTCATTGAATATC
451 ATGCAAAAGAAA-TCA-TCAATATC
* * * * * *
2824 ATTTATCATAACGGACAAGAATGTCTTATAGTGCCTAATCACAAAATTAATGAAG--TA-TCCTA
1 ATTTATCCT-AC-GAAAAGAATGTGTTATAGTGCGTAATCACAAAATGAATGAAGATTATTACTA
* * *
2886 GAAAATCCTTGTTTGTCTCATTTAAAGGCAC-AACTTAGACTTTACAGAAA-T-G-GTGAAGAAA
64 G--AACCCTTTTTTGTCTCATTT-GAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAA
**
2947 TCCATTCTTGCGAATCC--A-CATCAATTTCGTCTATCCTAATGAGTTTGACTCGGGTTGATAGT
126 TCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAG-TTGACT-ATGTTGATAGT
* * * *
3009 GCCTAATCC-GAAAAGATTAGGGATGAGGA-GACTATTCAAGTTTGTCTTATTTAAGAGGCAAAC
189 GCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAAC
* * * *
3072 TTTGATTCTAACCAAAACAGTAGAG-GCGAAACCTGTTCTTTCTTGCGACACCCAAAGCATCAAT
254 TTTGATTCTAACAAAAACGGTAGAGAG-GAAACC---T-TTTCTTACAACA-CCAAAGCATCAAT
*
3136 ATCATTTATCCTAA-GAAGGGATTGGGTTCTTAGTTCC-AATCTT-AAAAGAATGGAGACAGTTA
313 ATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTA
3198 CGAG-ATCGATAATTGTCATAATTCA-GGATGAATTTTTATTTT-AGGAAAATAGGGTAAAGAAA
378 CGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAA
*
3260 TGATTTTCATGC-AAAGAAAATCATCAATATC
443 TGATTTCCATGCAAAAG-AAATCATCAATATC
* * **
3291 ATTTATCCTACTGAAAAGAATGTGTTATACTGCGT-ATCAAAAAATGAATGAAGATTATTGTTAG
1 ATTTATCCTAC-GAAAAGAATGTGTTATAGTGCGTAATCACAAAATGAATGAAGATTATTACTAG
* *
3355 AACACTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGATATTGGAGTGAAGAAATCCA
65 AACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCA
3420 TTCTTGCGAATCCAAAGCATCAATTT-GTCTATCCTAATGA-TTGACTATGTTGATAGTGCCTAA
130 TTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTAA
3483 TCCTGAAAAGATTAGGGATTAGTATGACTATTCATG-TTGTCCTTATTTTATTTAAGAGCCAAAC
195 TCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGT-C-----TTATTTAAGAGCCAAAC
* *
3547 ATTGATTCTAACAAAAACGGTAGAGAAGGAAGCCTTTTCTTACAACACC-AAGCATCAATATCAT
254 TTTGATTCTAACAAAAACGGTAGAG-AGGAAACCTTTTCTTACAACACCAAAGCATCAATATCAT
*
3611 TTATCCTAATGAAGGGATT-GGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAG-TATGAGA
318 TTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGA
3674 ATCGATAATTGTCATAATTCA-GGATGAATTTTTATTTTAAGGAAAATAGGGTAAA-AAATGATT
383 ATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATT
* *
3737 CCCATGCAAAAGAAAGTCATGAATATC
448 TCCATGCAAAAGAAA-TCATCAATATC
* * * * * *
3764 ATTTATCATAACG-GAAGAATGTATTTATAGTGCCTAATCACAAAAT-TATGAAGAGTCGA-TAC
1 ATTTATCCT-ACGAAAAGAATGT-GTTATAGTGCGTAATCACAAAATGAATGAAGA-T-TATTAC
* * * *
3826 TAGAAGCCTTGGTTTGTCTCATTTAAGGCATAAACTTAGACTTTACAGAAATTGGAGTGAAGAAA
62 TAGAACCCTT-TTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAA
*
3891 TCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCATAATGAGGTTGACTATGTTGATAGTG
126 TCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGA-GTTGACTATGTTGATAGTG
*
3956 CCTAATCCTGAAAAGATTAGGGATTAGTAATGACTATTCATGTTT-TCTTATTT-AGAGGCAAAC
190 CCTAATCCTGAAAAGATTAGGGATTAGT-ATGACTATTCATGTTTGTCTTATTTAAGAGCCAAAC
* *
4019 TTTGATTCTAAACAAAAACGGTAGAG-GCG-AACCTTTTCTTGCGACGACCAAAGCATCAATATC
254 TTTGATTCT-AACAAAAACGGTAGAGAG-GAAACCTTTTCTTACAAC-ACCAAAGCATCAATATC
4082 A-TTATCCTAATGAAGGGATTGGGGTTCTTAGTGTCCAAATCTTGAAAAGAGTGGAGACAGTTAC
316 ATTTATCCTAATGAAGGGATT-GGGTTCTTAGT-TCCAAATCTTGAAAAGAGTGGAGACAGTTAC
* *
4146 GAGAATCGATAATTGTCATAATGCAGGGATGAATTTTTATTTTATGGAAAATAGGGT-AAGAAAT
379 GAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAAT
* *
4210 GATTCCCATGCAAAAGAAAGTCATGAATATC
444 GATTTCCATGCAAAAGAAA-TCATCAATATC
* * * * * *
4241 ATTTATCATAACGGAAAGAATGTATTTATAGTGCCTAATCAC-AAATTAATGAAGATCGA-TACT
1 ATTTATCCT-ACGAAAAGAATGT-GTTATAGTGCGTAATCACAAAATGAATGAAGAT-TATTACT
* * *
4304 AGAATCC-TGTTTGTCTCAATTTAAGGCAC-AACTTAGAC-TTACAGAAATTGGAGTGAAGAAAT
63 AGAACCCTTTTTTGTCTC-ATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAAT
*
4366 CCATTCTTGCGAATCC-AAGCATCAATTTCGTCTATCCTAATGAGTTGACTA-GGTGATAGTGCC
127 CCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCC
*
4429 TAATCCTGAAAAGATTA-GGATTAGTATGACTATTCATG-TTGTTCTTATTTAAGAGGCAAACTT
192 TAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTG-TCTTATTTAAGAGCCAAACTT
* * *
4492 TGATTCTAACAAAAAACAGTAGAG-GCGAAACCTTTTCTTGCGACAACCAAAGCATCAATATCAT
256 TGATTCTAAC-AAAAACGGTAGAGAG-GAAACCTTTTCTTACAAC-ACCAAAGCATCAATATCAT
* * * *
4556 GTATCCTAAAGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGACAGTCACGAGA
318 TTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGA
4621 ATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGG-AAATAGGGTAAAGAAATGATT
383 ATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATT
4685 TCCATGCAAAAGAAAATCATC-ATATC
448 TCCATGCAAAAG-AAATCATCAATATC
*
4711 ATTTATCCTACTG-AAAGAATGGTGTTTATAGTGCGTAATCACAAAATGAATGAAGATTATTATT
1 ATTTATCCTAC-GAAAAGAAT-GTG-TTATAGTGCGTAATCACAAAATGAATGAAGATTATTACT
* *
4775 AGTACCTTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
63 AGAACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
* *
4840 CATTCTTGCGAATCCCAAAACAATC-ATTTTGTCTATCC-AATGAGTTGACTATGTTGATAGTGC
128 CATTCTTGCGAAT-CCAAAGC-ATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGC
**
4903 CTAATCCTGAAAAGAGGA-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTT
191 CTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTT
*
4967 TGATTCTAACAAAAACGGTAGAGAGG-AAGCTTTTCTTACAAACACCAAAGCATCAATATCA-TT
256 TGATTCTAACAAAAACGGTAGAGAGGAAACCTTTTCTTAC-AACACCAAAGCATCAATATCATTT
5030 -TCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAAA
320 ATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAG-AA
* * *
5094 TCGATAA-TGTCATAATTCAAGGATGAATTTTTA-TTTATGGAAAATAGGGT-AAGAAATGATTC
384 TCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTT
* *
5156 CCATCCAAAAGAAAGTCATGAATATC
449 CCATGCAAAAGAAA-TCATCAATATC
* * * * * *
5182 ATTTCAT--AACGGAAAGAATGTATTATAGTGCCTAATCACAAAATTAATG-AGATCGA-TACTA
1 ATTT-ATCCTACGAAAAGAATGTGTTATAGTGCGTAATCACAAAATGAATGAAGAT-TATTACTA
* * *
5243 GAATCCTTGTTTGTCTCATTT-AAGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCC
64 GAACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCC
5307 ATTCTTGCGAATCCAAAGCATCAATTTCGTCTAT-CTAATGAGTTGACTATGTTGATAGTGCCTA
129 ATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTA
* *
5371 ATCCTGAAAAGATTAGGGATTAGTATGACTA-TCAAGTTTGTCTTATTTAAGAGGCAAACTTTGA
194 ATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTTTGA
* * * *
5435 TTCTAACCAAAACAGTA-AG-GCGAAACCCTTTTCTTGCGACACCAAAGCATCAATATCA-TTAT
259 TTCTAACAAAAACGGTAGAGAG-GAAA-CCTTTTCTTACAACACCAAAGCATCAATATCATTTAT
* *
5497 CCTAA-GAAGGGATTGGGTTCTTAGTTCCAAATCTTTAAAAGAATGGAGACAGTTACGAGAATCG
322 CCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCG
* * *
5561 ATTAATTGTCATAAGTCAGGGATGAATTTTTTTTTTAAGGAAAATAGGGTAAAGAAATGATTTTC
387 A-TAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTTCC
*
5626 A--CAAAAAAAATCATC-ATATC
451 ATGCAAAAGAAATCATCAATATC
* **
5646 ATTTATCCTACTGAAAAGAATGTGTTTATAGTGCGTAGTCACAAAATGAATGAAGA-TATTGTTA
1 ATTTATCCTAC-GAAAAGAATGTG-TTATAGTGCGTAATCACAAAATGAATGAAGATTATTACT-
* *
5710 AGAACACTTTTTTGTCTCATTTGAGGCACAAAC-TAGACTTTAC-GATATTGGAGTGAAGAAATC
63 AGAACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
* *
5773 CCTTCGTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTA-GTTGATAGTGCCT
128 CATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCT
5837 AATCCTGAAAA-A-TAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTTTG
193 AATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTTTG
*
5900 ATTCTAACAAAAACGGTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATCAATATCATTTATC
258 ATTCTAACAAAAACGGTAGAGAGGAAACCTTTTCTTACAACACCAAAGCATCAATATCATTTATC
* *
5965 CTAATGAA-GGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGCAGATAGTTACGAGAATCGA
323 CTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGA
6029 T-ATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAG-AATGATTTCCAT
388 TAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTTCCAT
6092 GCAAAA-AAATCATCAATATC
453 GCAAAAGAAATCATCAATATC
*
6112 ATTTATCCTACTGAAAAGAATGTGTTTATAGTGCGTAATCACAAAA-GAAAGAAGATTATTACTA
1 ATTTATCCTAC-GAAAAGAATGTG-TTATAGTGCGTAATCACAAAATGAATGAAGATTATTACTA
* *
6176 GAACCCTTTTTTTGTGTCATTTGACGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
64 GAACCC-TTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
6241 CATT-TTGCGAATCC-AAGCATCAATTTCGTCTATCCTAATGAGTTGA--ATGTTGATAGTGCCT
128 CATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCT
6302 -ATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTC-TATTTAAGAGCCAAACTTTG
193 AATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTTTG
* *
6365 ATTCTAAAAAAAAC-GTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATC
258 ATTCTAACAAAAACGGTAGAGAGGAAACCTTTTCTTACAACACCAAAGCATC
Statistics
Matches: 5379, Mismatches: 324, Indels: 484
0.87 0.05 0.08
Matches are distributed among these distances:
462 41 0.01
463 27 0.01
464 114 0.02
465 490 0.09
466 643 0.12
467 525 0.10
468 364 0.07
469 377 0.07
470 323 0.06
471 603 0.11
472 382 0.07
473 376 0.07
474 298 0.06
475 347 0.06
476 206 0.04
477 133 0.02
478 114 0.02
479 14 0.00
480 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (473 bp):
ATTTATCCTACGAAAAGAATGTGTTATAGTGCGTAATCACAAAATGAATGAAGATTATTACTAGA
ACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCAT
TCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTAAT
CCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTTTGATT
CTAACAAAAACGGTAGAGAGGAAACCTTTTCTTACAACACCAAAGCATCAATATCATTTATCCTA
ATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGATAA
TTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTTCCATGCA
AAAGAAATCATCAATATC
Found at i:2329 original size:937 final size:948
Alignment explanation
Indices: 28--6415 Score: 9196
Period size: 937 Copynumber: 6.8 Consensus size: 948
18 GAATGGTGTT
* * * * * *
28 TAGTGCGTAATCACAAAAATGAAAGAAGATTATTACTAGAACCCTT-TTTGTCTCATTTGAGGCA
1 TAGTGCCTAATCAC-AAAATTAATGAAGATGA-TACTAGAATCCTTGTTTGTCTCATTTAAGGCA
*
92 TAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTT
64 CAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAA-TT
157 TCGTCTATCCTAAT-AGTTTGACTATGTT-ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA
128 TCGTCTATCCTAATGAG-TTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA
* *
220 TGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTTTGATTCTAAC-AAAACGGTAGA-GAGAA
192 TGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGGCGAA
* * *
283 GCCTTTTCTTACAACACCAAAGCATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTAGTTT
257 ACCTTTTCTTGCGACACCAAAGCATCAATATCATTTATCCTAATGAAGGGATTGGGTTC----TT
348 AGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATG
318 AGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATG
413 AATTTTTATTTTAAAGGAAAAATA-GGTAAAGAAATGATTT-CATGC-AAAGAAATCATCAATAC
383 AATTTTTATTTT-AAGG-AAAATAGGGTAAAGAAATGATTTCCATGCAAAAGAAATCATCAATA-
* * *
475 GCATTTATCCAACTGAAAAGATTGT-TTATAGTGGCGTAATCACAAAATGAATGAAGATTATTAC
445 TCATTTATCCTACTGAAAAGAATGTGTTATAGT-GCGTAATCACAAAATGAATGAAGATTATTAC
*
539 TAGAACCCTTTTTGTGTCTCA-TTGAGGCACAAACTTAGACTTTACAAAAATTGGAGTGAAGAAA
509 TAGAACCCTTTTT-TGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAA
* *
603 T-CATTCTTGCGAATCTAAAGCTTCAATTTC-T-TGATCCTAATGAGTTTGGACTATGTTGATAG
573 TCCATTCTTGCGAATCCAAAGCATCAATTTCGTCT-ATCCTAATGAG-TT-GACTATGTTGATAG
* *
665 TGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTA-TGAAGAGGCAAA
635 TGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA-GCCAA
729 CTTTGATTCTAACAAAAACGGTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATCAAATATCA
699 CTTTGATTCTAACAAAAACGGTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATC-AATATCA
794 TTTATCCTAATGAAGGGATTGGGTTCTTAG-TCC-AATC-TGAAAAGAGTGGAGACAGTTACGAG
763 TTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAG
* *
856 AATCGATAATTGTCATAAGTTCAGGGATG---GTTT-TTTTATGGAAAATAGGGTAAAGAAATGA
828 AATCGATAATTGTCATAA-TTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGA
917 TTCCCATGCAAAAGAAAGTCATG-A-ATCATTTATCATAACGGAAAGAATGTATTTA
892 TTCCCATGCAAAAGAAAGTCATGAATATCATTTATCATAACGGAAAGAATGTATTTA
*
972 TAGTGCCTAATCACAAAATTAATGAAGATCGATACTAGAATCC-TGTTTGTCTCATTTAAGGCAT
1 TAGTGCCTAATCACAAAATTAATGAAGAT-GATACTAGAATCCTTGTTTGTCTCATTTAAGGCAC
1036 AAACTTAGACTTTACAGAAATTGGAG-GAAGAAATCCATTCTTGCGAATCC-AAGCATCAATTTC
65 AAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTC
* *
1099 GTCTATCATAATGAGTTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATGA-TATG
130 GTCTATCCTAATGAG-TTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATG
1163 ACTATTCATGTTTGTCTTATTTAAGAGGC-AAC-TTGATTCTAACAAAAACGGTAGAGGCGAAAC
194 ACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGGCGAAAC
1226 ACTTTTCTTGCGACACCAAAGCATCAAGATCAATCATTTATCCTAATGAAGGGA-TGGGTTCTTA
259 -CTTTTCTTGCGACACCAAAGCATC-A-AT--ATCATTTATCCTAATGAAGGGATTGGGTTCTTA
*
1290 G-TCCAAATCTTGAAAAGAGTGGAGACAAGTTACGAGAATCGATAATTGTCATAATTGAGGGATG
319 GTTCCAAATCTTGAAAAGAGTGGAGAC-AGTTACGAGAATCGATAATTGTCATAATTCAGGGATG
1354 AATTTTT-TTTTAAGGAAAATAGGGT-AAGAAATGATTTCCATGCAAAAGAAATCATCAA-ATCA
383 AATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTTCCATGCAAAAGAAATCATCAATATCA
1416 TTTATCCTACTGAAAAGAATGTGTTATAGTGCGT-ATCACAAAATGAATGAAGA-TATTACTAGA
448 TTTATCCTACTGAAAAGAATGTGTTATAGTGCGTAATCACAAAATGAATGAAGATTATTACTAGA
*
1479 ACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTAACAGAAATGGGAGTGAAGAAATCCA
513 ACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTT-ACAGAAATTGGAGTGAAGAAATCCA
*
1544 TTCTTGCGAA-CCAAAGCATCAATTTCGTCTATCCTAATGGAGTTGACTAGGTTGATAGTGCCCT
577 TTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAAT-GAGTTGACTATGTTGATAGTG-CCT
1608 -ATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTGTTGTCTTATTTAAGAGCCAACTTTG
640 AATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGT-TTGTCTTATTTAAGAGCCAACTTTG
1672 ATTCTAACAAAAACGGTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATC-ATAT-ATTTATC
704 ATTCTAACAAAAACGGTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATCAATATCATTTATC
*
1735 CTAAGGAAGGGATTGGGTTC-TAGTTCC-AATCTTG-AAAGAGTGGAGACCAGTTACGAGAATCG
769 CTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGA-CAGTTACGAGAATCG
*
1797 ATAATTGTCATAATTCAGGGATGAATTTTTTATTTTATGGAAAATAGGGTAAAGAAATGATTCCC
833 ATAATTGTCATAATTCAGGGATGAA-TTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTCCC
1862 ATGC-AAAGAAAGTCATGAATATCATTTATCATAACGGAAAGAATGTATTTA
897 ATGCAAAAGAAAGTCATGAATATCATTTATCATAACGGAAAGAATGTATTTA
1913 TAGTGCCTAATCACAAAATTAATGAAGATCGATACTAGAATCCTTGTTTGTCCTCATTTAAGGCA
1 TAGTGCCTAATCACAAAATTAATGAAGAT-GATACTAGAATCCTTGTTTGT-CTCATTTAAGGCA
1978 CAAACTTAGACTTTACCAGAAATTGGAGTGAAGAAATCCATTC-TGCGAATCCAAAGCATCAATT
64 CAAACTTAGACTTTA-CAGAAATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATT
2042 TCGTCTATCCTAATGAGTTGACTATGTTGAATAGTGCCTAATCCTGAAAAGATTAGGGA-TAGTA
128 TCGTCTATCCTAATGAGTTGACTATGTTG-ATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA
* *
2106 TGACTATTCATGTTTGTCTTATTAAAGAGGCAAACTTTGA-TC-AAC-AAAACAGTAGAGGCGAA
192 TGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGGCGAA
*
2168 ACCTTTTCTTGCGACACC-AAGCATCAATATCATTTATCCTAAAGAAGGGATTTGGGTTC-TAGT
257 ACCTTTTCTTGCGACACCAAAGCATCAATATCATTTATCCTAATGAAGGGA-TTGGGTTCTTAGT
* * * *
2231 TCCAAATCTTGAAAAGAATGGAGATAGTCACGAGAATCGATAA-TGTCAGAA-TCAGGGATGAA-
321 TCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAAT
2293 TTTTATTTTAAGGAAAATA-GGTAAAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCA--
386 TTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTTCCATGCAAAAG-AAATCATCAATATCATT
*
2355 TATCCTAC-GAAAAGAATG-GTTTATAGTGCGTAATCACAAAATGAATGAAGAGTTATTATTAGA
450 TATCCTACTGAAAAGAATGTG-TTATAGTGCGTAATCACAAAATGAATGAAGA-TTATTACTAGA
*
2418 ACACTTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCA
513 AC-CCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCA
* *
2483 TTCTTGCGAATCCAAAACATCAATTT-GTCTATCCCAATGAGTTGACTATGTTGATAG-GCCTAA
577 TTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTAA
*
2546 TCCTG-AAAGATGAGGGATTAGTATGACTA-TCATGTTTGTCTTATTTAAGAGCCAAACTTTGAA
642 TCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCC-AACTTTG-A
2609 TTCTAACAAAAAACGGTAGAGAGGAAGCC-TTTCTTACAACACCAAAGCATCAATATCATTTATC
705 TTCTAAC-AAAAACGGTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATCAATATCATTTATC
2673 CTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGA
769 CTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGA
* *
2738 TAATTGTCATAATTCAAGGATGAATTTTTATTTTATGGAAAA-AGGGT-AAGAAATGATTCCCAT
834 TAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTCCCAT
* *
2801 CCAAAAGAAAGTCATTGAATATCATTTATCATAACGGACAAGAATGT-CTTA
899 GCAAAAGAAAGTCA-TGAATATCATTTATCATAACGGA-AAGAATGTATTTA
*
2852 TAGTGCCTAATCACAAAATTAATGAAG-T-ATCCTAGAAAATCCTTGTTTGTCTCATTTAAAGGC
1 TAGTGCCTAATCACAAAATTAATGAAGATGATACTAG--AATCCTTGTTTGTCTCATTT-AAGGC
2915 AC-AACTTAGACTTTACAGAAA-T-G-GTGAAGAAATCCATTCTTGCGAATCC--A-CATCAATT
63 ACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATT
** * *
2973 TCGTCTATCCTAATGAGTTTGACTCGGGTTGATAGTGCCTAATCC-GAAAAGATTAGGGATGAGG
128 TCGTCTATCCTAATGAG-TTGACT-ATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGT
* * *
3037 A-GACTATTCAAGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACCAAAACAGTAGAGGCGA
191 ATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGGCGA
3101 AACCTGTTCTTTCTTGCGACACCCAAAGCATCAATATCATTTATCCTAA-GAAGGGATTGGGTTC
256 AACC---T-TTTCTTGCGACA-CCAAAGCATCAATATCATTTATCCTAATGAAGGGATTGGGTTC
*
3165 TTAGTTCC-AATCTT-AAAAGAATGGAGACAGTTACGAG-ATCGATAATTGTCATAATTCA-GGA
316 TTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGATAATTGTCATAATTCAGGGA
*
3226 TGAATTTTTATTTT-AGGAAAATAGGGTAAAGAAATGATTTTCATGC-AAAGAAAATCATCAATA
381 TGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTTCCATGCAAAAG-AAATCATCAATA
* * **
3289 TCATTTATCCTACTGAAAAGAATGTGTTATACTGCGT-ATCAAAAAATGAATGAAGATTATTGTT
445 TCATTTATCCTACTGAAAAGAATGTGTTATAGTGCGTAATCACAAAATGAATGAAGATTATTACT
* *
3353 AGAACACTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGATATTGGAGTGAAGAAATC
510 AGAACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATC
3418 CATTCTTGCGAATCCAAAGCATCAATTT-GTCTATCCTAATGA-TTGACTATGTTGATAGTGCCT
575 CATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCT
3481 AATCCTGAAAAGATTAGGGATTAGTATGACTATTCATG-TTGTCCTTATTTTATTTAAGAGCCAA
640 AATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGT-C-----TTATTTAAGAGCC-A
*
3545 ACATTGATTCTAACAAAAACGGTAGAGAAGGAAGCCTTTTCTTACAACACC-AAGCATCAATATC
698 ACTTTGATTCTAACAAAAACGGTAGAG-AGGAAGCCTTTTCTTACAACACCAAAGCATCAATATC
*
3609 ATTTATCCTAATGAAGGGATT-GGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAG-TATGA
762 ATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGA
3672 GAATCGATAATTGTCATAATTCA-GGATGAATTTTTATTTTAAGGAAAATAGGGTAAA-AAATGA
827 GAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGA
3735 TTCCCATGCAAAAGAAAGTCATGAATATCATTTATCATAACGG-AAGAATGTATTTA
892 TTCCCATGCAAAAGAAAGTCATGAATATCATTTATCATAACGGAAAGAATGTATTTA
*
3791 TAGTGCCTAATCACAAAATT-ATGAAGAGTCGATACTAGAAGCCTTGGTTTGTCTCATTTAAGGC
1 TAGTGCCTAATCACAAAATTAATGAAGA-T-GATACTAGAATCCTT-GTTTGTCTCATTTAAGGC
*
3855 ATAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATT
63 ACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATT
*
3920 TCGTCTATCATAATGAGGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA
128 TCGTCTATCCTAATGA-GTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGT-
3985 ATGACTATTCATGTTT-TCTTATTT-AGAGGCAAACTTTGATTCTAAACAAAAACGGTAGAGGCG
191 ATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCT-AACAAAAACGGTAGAGGCG
4048 -AACCTTTTCTTGCGACGACCAAAGCATCAATATCA-TTATCCTAATGAAGGGATTGGGGTTCTT
255 AAACCTTTTCTTGCGAC-ACCAAAGCATCAATATCATTTATCCTAATGAAGGGATT-GGGTTCTT
*
4111 AGTGTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGATAATTGTCATAATGCAGGGAT
318 AGT-TCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGATAATTGTCATAATTCAGGGAT
* * *
4176 GAATTTTTATTTTATGGAAAATAGGGT-AAGAAATGATTCCCATGCAAAAGAAAGTCATGAATAT
382 GAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTTCCATGCAAAAGAAA-TCATCAATAT
* * * * * *
4240 CATTTATCATAAC-GGAAAGAATGTATTTATAGTGCCTAATCAC-AAATTAATGAAGATCGA-TA
446 CATTTATCCT-ACTGAAAAGAATGT-GTTATAGTGCGTAATCACAAAATGAATGAAGAT-TATTA
* * *
4302 CTAGAATCC-TGTTTGTCTCAATTTAAGGCAC-AACTTAGAC-TTACAGAAATTGGAGTGAAGAA
508 CTAGAACCCTTTTTTGTCTC-ATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAA
*
4364 ATCCATTCTTGCGAATCC-AAGCATCAATTTCGTCTATCCTAATGAGTTGACTA-GGTGATAGTG
572 ATCCATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTG
*
4427 CCTAATCCTGAAAAGATTA-GGATTAGTATGACTATTCATG-TTGTTCTTATTTAAGAGGCAAAC
637 CCTAATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTG-TCTTATTTAAGA-GCCAAC
* * * *
4490 TTTGATTCTAACAAAAAACAGTAGAG-GCGAAACCTTTTCTTGCGACAACCAAAGCATCAATATC
700 TTTGATTCTAAC-AAAAACGGTAGAGAG-GAAGCCTTTTCTTACAAC-ACCAAAGCATCAATATC
* * * *
4554 ATGTATCCTAAAGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAATGGAGACAGTCACGA
762 ATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGA
4619 GAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGG-AAATAGGGTAAAGAAATGA
827 GAATCGATAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGA
* * * * * *
4683 TTTCCATGCAAAAGAAAATCAT-CATATCATTTATCCT-ACTGAAAGAATGGTGTTTA
892 TTCCCATGCAAAAGAAAGTCATGAATATCATTTATCATAACGGAAAGAAT-GTATTTA
* * * * * * *
4739 TAGTGCGTAATCACAAAATGAATGAAGATTATTATTAGTA-CCTTTTTTTGTCTCATTTGAGGCA
1 TAGTGCCTAATCACAAAATTAATGAAGATGA-TACTAGAATCC-TTGTTTGTCTCATTTAAGGCA
*
4803 CAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTCTTGCGAATCCCAAAACAATC-AT
64 CAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTCTTGCGAAT-CCAAAGC-ATCAAT
* **
4867 TTTGTCTATCC-AATGAGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGAGGA-GGATTAGTA
127 TTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTA
*
4930 TGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTTTGATTCTAACAAAAACGGTAGAGAG-G-
192 TGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAG-GCGA
* * *
4993 AAGCTTTTCTTACAAACACCAAAGCATCAATATCA-TT-TCCTAATGAAGGGATTGGGTTCTTAG
256 AACCTTTTCTTGC-GACACCAAAGCATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAG
*
5056 TTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAAATCGATAA-TGTCATAATTCAAGGATGA
320 TTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAG-AATCGATAATTGTCATAATTCAGGGATGA
* * * *
5120 ATTTTTA-TTTATGGAAAATAGGGT-AAGAAATGATTCCCATCCAAAAGAAAGTCATGAATATCA
384 ATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTTCCATGCAAAAGAAA-TCATCAATATCA
* * * * * *
5183 TTTCAT--AAC-GGAAAGAATGTATTATAGTGCCTAATCACAAAATTAATG-AGATCGA-TACTA
448 TTT-ATCCTACTGAAAAGAATGTGTTATAGTGCGTAATCACAAAATGAATGAAGAT-TATTACTA
* * *
5243 GAATCCTTGTTTGTCTCATTT-AAGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCC
511 GAACCCTTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCC
5307 ATTCTTGCGAATCCAAAGCATCAATTTCGTCTAT-CTAATGAGTTGACTATGTTGATAGTGCCTA
576 ATTCTTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTA
* *
5371 ATCCTGAAAAGATTAGGGATTAGTATGACTA-TCAAGTTTGTCTTATTTAAGAGGCAAACTTTGA
641 ATCCTGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA-GCCAACTTTGA
* * * * *
5435 TTCTAACCAAAACAGTA-AG-GCGAAACCCTTTTCTTGCGACACCAAAGCATCAATATCA-TTAT
705 TTCTAACAAAAACGGTAGAGAG-G-AAGCCTTTTCTTACAACACCAAAGCATCAATATCATTTAT
* *
5497 CCTAA-GAAGGGATTGGGTTCTTAGTTCCAAATCTTTAAAAGAATGGAGACAGTTACGAGAATCG
768 CCTAATGAAGGGATTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCG
* * **
5561 ATTAATTGTCATAAGTCAGGGATGAATTTTTTTTTTAAGGAAAATAGGGTAAAGAAATGATTTTC
833 A-TAATTGTCATAATTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTCCC
* * * * *
5626 A--CAAAA-AAAATCAT-CATATCATTTATCCT-ACTGAAAAGAATGTGTTTA
897 ATGCAAAAGAAAGTCATGAATATCATTTATCATAAC-GGAAAGAATGTATTTA
* * * ** * *
5674 TAGTGCGTAGTCACAAAATGAATGAAGAT-ATTGTTAAGAA-CACTTTTTTGTCTCATTTGAGGC
1 TAGTGCCTAATCACAAAATTAATGAAGATGA-TACT-AGAATC-CTTGTTTGTCTCATTTAAGGC
* * *
5737 ACAAAC-TAGACTTTAC-GATATTGGAGTGAAGAAATCCCTTCGTGCGAATCCAAAGCATCAATT
63 ACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATT
5800 TCGTCTATCCTAATGAGTTGACTA-GTTGATAGTGCCTAATCCTGAAAA-A-TAGGGATTAGTAT
128 TCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTAT
*
5862 GACTATTCATGTTTGTCTTATTTAAGAGCCAAACTTTGATTCTAACAAAAACGGTAGAGAG-GAA
193 GACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAG-GCGAA
* * *
5926 GCCTTTTCTTACAACACCAAAGCATCAATATCATTTATCCTAATGAA-GGATTGGGTTCTTAGTT
257 ACCTTTTCTTGCGACACCAAAGCATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTT
* *
5990 CCAAATCTTGAAAAGAGTGCAGATAGTTACGAGAATCGAT-ATTGTCATAATTCAGGGATGAATT
322 CCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATT
6054 TTTATTTTAAGGAAAATAGGGTAAAG-AATGATTTCCATGCAAAA-AAATCATCAATATCATTTA
387 TTTATTTTAAGGAAAATAGGGTAAAGAAATGATTTCCATGCAAAAGAAATCATCAATATCATTTA
*
6117 TCCTACTGAAAAGAATGTGTTTATAGTGCGTAATCACAAAA-GAAAGAAGATTATTACTAGAACC
452 TCCTACTGAAAAGAATGTG-TTATAGTGCGTAATCACAAAATGAATGAAGATTATTACTAGAACC
* *
6181 CTTTTTTTGTGTCATTTGACGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATT-
516 C-TTTTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTC
6245 TTGCGAATCC-AAGCATCAATTTCGTCTATCCTAATGAGTTGA--ATGTTGATAGTGCCT-ATCC
580 TTGCGAATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCC
6306 TGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTC-TATTTAAGAGCCAAACTTTGATTCT
645 TGAAAAGATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCC-AACTTTGATTCT
*
6370 AAAAAAAAC-GTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATC
709 AACAAAAACGGTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATC
Statistics
Matches: 5048, Mismatches: 194, Indels: 418
0.89 0.03 0.07
Matches are distributed among these distances:
929 2 0.00
930 46 0.01
931 272 0.05
932 201 0.04
933 132 0.03
934 101 0.02
935 212 0.04
936 266 0.05
937 471 0.09
938 465 0.09
939 397 0.08
940 431 0.09
941 361 0.07
942 221 0.04
943 258 0.05
944 190 0.04
945 211 0.04
946 148 0.03
947 226 0.04
948 181 0.04
949 141 0.03
950 69 0.01
951 41 0.01
952 5 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (948 bp):
TAGTGCCTAATCACAAAATTAATGAAGATGATACTAGAATCCTTGTTTGTCTCATTTAAGGCACA
AACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTCTTGCGAATCCAAAGCATCAATTTCG
TCTATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTGAAAAGATTAGGGATTAGTATGAC
TATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAACGGTAGAGGCGAAACCT
TTTCTTGCGACACCAAAGCATCAATATCATTTATCCTAATGAAGGGATTGGGTTCTTAGTTCCAA
ATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGATAATTGTCATAATTCAGGGATGAATTTTTA
TTTTAAGGAAAATAGGGTAAAGAAATGATTTCCATGCAAAAGAAATCATCAATATCATTTATCCT
ACTGAAAAGAATGTGTTATAGTGCGTAATCACAAAATGAATGAAGATTATTACTAGAACCCTTTT
TTGTCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGAGTGAAGAAATCCATTCTTGCGA
ATCCAAAGCATCAATTTCGTCTATCCTAATGAGTTGACTATGTTGATAGTGCCTAATCCTGAAAA
GATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGCCAACTTTGATTCTAACAAAA
ACGGTAGAGAGGAAGCCTTTTCTTACAACACCAAAGCATCAATATCATTTATCCTAATGAAGGGA
TTGGGTTCTTAGTTCCAAATCTTGAAAAGAGTGGAGACAGTTACGAGAATCGATAATTGTCATAA
TTCAGGGATGAATTTTTATTTTAAGGAAAATAGGGTAAAGAAATGATTCCCATGCAAAAGAAAGT
CATGAATATCATTTATCATAACGGAAAGAATGTATTTA
Done.