genome.fa.s757.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold757
Parameters: 2 7 7 80 10 50 1000
Length:  59478

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1791--1826	9	4.0	9	92	0	63	44	0	41	13	1.44
1793--1848	18	3.1	18	89	0	76	46	0	37	16	1.47
1793--1833	9	4.6	9	87	0	55	48	0	36	14	1.44
8308--8802	166	3.0	166	81	5	583	33	12	13	40	1.82
9059--9276	120	1.8	118	82	5	278	25	16	20	37	1.94
13499--13570	28	2.6	27	82	4	74	73	11	11	4	1.22
15108--15226	55	2.2	55	84	3	150	34	21	14	30	1.93
15223--15293	36	1.9	37	97	2	135	29	26	19	23	1.98
15235--15355	31	3.7	31	84	5	134	28	23	23	23	1.99
21450--21524	20	3.8	20	78	7	89	40	13	13	33	1.83
21447--21524	40	2.0	39	87	2	111	39	14	12	33	1.84
21942--22111	45	3.7	45	79	6	182	32	17	27	22	1.96
21913--22077	47	3.5	46	79	7	174	32	17	28	21	1.96
21912--22109	92	2.1	93	83	6	242	32	18	27	22	1.97
23768--23886	42	2.8	42	89	0	184	43	2	45	8	1.47
28920--30660	28	59.5	28	81	9	891	23	18	29	28	1.98
28920--30645	96	19.6	84	79	9	757	23	18	29	28	1.98
29202--29241	20	2.0	20	85	0	53	25	15	35	25	1.94
29174--29269	48	2.0	48	87	0	138	21	16	35	26	1.95
29146--29289	76	1.9	76	88	0	216	22	18	32	27	1.97
29304--30357	32	34.4	32	84	5	959	21	19	28	29	1.98
30332--30631	27	10.9	27	90	3	377	27	15	32	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30332--30631	82	3.6	82	86	4	381	27	15	32	25	1.95
30332--30631	55	5.5	55	91	2	401	27	15	32	25	1.95
31989--32034	23	2.0	24	86	4	67	4	13	10	71	1.27
39097--39171	20	3.8	20	76	0	69	40	10	13	36	1.79
39094--39171	40	2.0	39	84	2	102	39	11	12	35	1.80
40116--40232	55	2.1	55	85	4	164	27	23	16	32	1.96
40236--40639	36	11.8	36	75	9	247	31	25	20	22	1.98
40276--40655	98	3.8	98	76	10	361	31	26	20	21	1.98
40238--40620	170	2.3	167	79	8	391	32	25	19	22	1.97
40238--40609	206	1.8	206	87	0	564	32	25	19	22	1.97
40238--40697	206	2.3	206	82	2	554	32	26	18	21	1.97
40677--40859	31	5.7	30	71	13	125	28	28	18	24	1.98
40675--40917	96	2.5	97	78	9	242	29	28	18	24	1.98
40834--40904	37	1.9	36	91	8	117	32	29	16	21	1.95
41067--41407	79	4.3	79	79	4	235	23	24	18	33	1.97
41242--41412	80	2.1	82	86	3	240	22	28	18	30	1.97
41389--41568	80	2.2	80	80	0	198	25	23	18	32	1.97
41539--41794	52	5.0	52	78	4	250	26	22	14	35	1.93
42758--42817	27	2.3	27	88	2	86	31	38	15	15	1.88
44765--44806	21	2.0	21	85	0	57	47	2	42	7	1.43
53039--53073	16	2.2	16	94	0	61	42	8	14	34	1.76
54404--54479	12	6.9	11	75	15	52	39	2	48	9	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54403--54488	24	3.8	24	72	17	85	41	2	45	10	1.51
54394--54512	42	2.8	42	92	0	193	42	2	46	8	1.47

Tables:   1

The End!