genome.fa.s759.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold759
Parameters: 2 7 7 80 10 50 1000
Length:  101184

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469--517	21	2.3	22	83	16	68	38	0	0	61	0.96
475--539	10	6.1	11	69	24	50	40	1	0	58	1.07
478--552	20	3.5	21	72	22	50	42	1	0	56	1.08
1546--1606	23	2.6	23	79	10	61	50	0	0	49	1.00
4793--4838	23	2.0	24	86	4	67	34	2	4	58	1.30
4864--4900	6	6.3	6	93	6	67	35	0	0	64	0.94
4972--5075	40	2.6	40	95	1	181	29	10	6	52	1.61
5119--5163	22	2.0	22	100	0	90	31	4	13	51	1.61
11728--11758	16	1.9	16	93	0	53	35	0	3	61	1.12
14037--14072	16	2.3	15	90	4	54	47	2	2	47	1.31
14808--14855	17	2.7	17	87	12	62	43	0	0	56	0.99
15449--15490	19	2.1	19	86	8	57	61	2	2	33	1.21
15477--15509	14	2.4	14	90	5	50	69	0	0	30	0.88
15455--15514	23	2.8	21	82	12	61	66	0	0	33	0.92
16644--16679	3	12.0	3	100	0	72	0	33	0	66	0.92
17787--17816	15	2.1	14	93	6	51	63	6	0	30	1.20
18499--18545	24	2.0	24	87	8	69	51	2	2	44	1.25
21030--21074	22	2.1	21	88	12	65	42	0	0	57	0.98
21061--21122	27	2.2	28	86	8	83	43	4	0	51	1.23
21475--21507	15	2.2	15	89	10	50	39	0	0	60	0.97
22073--22121	26	1.9	26	84	12	66	51	0	4	44	1.20
22407--22461	28	2.0	28	96	0	101	20	14	12	52	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23152--23202	19	2.6	21	75	15	63	45	0	0	54	0.99
23181--23231	12	4.6	11	79	11	52	50	0	1	47	1.12
23961--24008	18	2.6	21	72	27	54	50	2	0	47	1.12
25814--25849	2	18.0	2	100	0	72	50	0	0	50	1.00
29753--29836	16	5.1	15	78	15	78	35	0	3	60	1.14
29767--29836	32	2.2	32	86	0	95	34	0	4	61	1.16
30847--30904	24	2.5	22	80	5	62	48	0	0	51	1.00
30879--30959	36	2.2	38	91	4	130	50	0	1	48	1.08
34222--34265	23	1.9	23	95	0	79	31	27	18	22	1.97
34840--34874	15	2.4	15	95	4	63	17	20	5	57	1.60
34899--35004	5	21.4	5	89	1	151	19	19	5	54	1.64
36341--36371	16	2.0	15	93	6	53	77	0	0	22	0.77
48871--49482	42	14.6	42	86	1	735	10	33	19	36	1.86
49426--49505	42	1.9	42	84	5	108	11	27	18	42	1.84
50098--50132	15	2.4	15	95	4	63	17	20	5	57	1.60
50160--50239	5	16.0	5	92	0	88	20	20	10	50	1.76
50160--50239	15	5.3	15	87	0	115	20	20	10	50	1.76
50157--50238	10	8.2	10	86	0	101	19	19	8	52	1.71
51575--51605	16	2.0	15	93	6	53	77	3	0	19	0.90
53960--54003	12	3.7	12	81	6	54	47	0	0	52	1.00
54986--55010	10	2.5	10	100	0	50	48	0	12	40	1.40
58400--58653	128	2.0	127	90	0	400	50	9	16	23	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62215--62263	20	2.2	21	86	13	64	51	0	0	48	1.00
63382--63422	21	2.0	21	85	9	57	48	0	9	41	1.36
64356--64397	22	2.0	20	86	13	57	69	0	2	28	1.01
64424--64478	17	3.2	17	82	12	60	47	0	0	52	1.00
64443--64497	16	3.2	18	80	17	55	49	0	0	50	1.00
64896--64980	33	2.5	35	75	17	83	37	1	0	61	1.04
64924--64972	16	3.0	16	75	3	53	42	0	0	57	0.99
66813--66879	22	2.9	24	76	8	59	58	0	0	41	0.98
70436--70479	18	2.4	18	80	0	52	45	0	0	54	0.99
70475--70535	29	2.1	29	84	6	79	55	0	0	44	0.99
71774--71799	13	2.0	13	100	0	52	53	0	0	46	1.00
72142--72201	29	2.1	29	84	6	77	40	1	0	58	1.08
72189--72225	17	2.1	18	90	5	58	56	0	0	43	0.99
73141--73181	19	2.1	20	90	4	66	63	0	0	36	0.95
74664--74702	15	2.6	15	83	0	51	56	0	2	41	1.13
74795--74860	15	4.1	16	73	19	66	60	1	0	37	1.06
75269--75301	17	2.0	17	94	5	59	39	0	0	60	0.97
76233--76280	18	2.7	18	84	9	64	41	0	0	58	0.98
76240--76280	17	2.5	17	88	11	59	39	0	0	60	0.96
76505--76529	5	5.0	5	100	0	50	60	0	0	40	0.97
76517--76555	14	2.8	13	81	11	51	64	0	0	35	0.94
79938--80047	13	8.6	14	68	16	51	43	0	2	53	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79945--80055	11	10.0	11	69	14	50	45	0	1	52	1.11
79950--80104	75	2.1	75	83	9	192	52	0	1	45	1.13
82589--82627	14	2.8	14	100	0	78	28	7	33	30	1.85
86202--86235	14	2.2	16	90	10	54	35	0	0	64	0.94
86525--86563	21	1.9	20	89	5	60	38	0	0	61	0.96
86576--86614	19	2.1	19	85	9	53	64	0	2	33	1.08
86576--86654	32	2.4	34	89	8	119	62	1	1	35	1.12
86686--86727	15	2.8	15	89	7	59	59	0	0	40	0.97
86693--86737	15	3.2	14	87	6	56	62	0	0	37	0.96
86693--86737	13	3.2	14	84	6	56	62	0	0	37	0.96
87320--87357	17	2.2	18	85	4	51	50	0	0	50	1.00
87311--87358	25	2.0	24	83	4	60	50	0	0	50	1.00
88243--88283	17	2.5	17	84	11	50	39	2	0	58	1.11
88505--88538	14	2.6	13	86	13	52	58	2	0	38	1.13
90633--90661	14	2.0	15	93	6	51	34	3	0	62	1.12
91982--92024	19	2.3	19	84	8	52	51	0	0	48	1.00
92023--92047	13	1.9	13	100	0	50	40	0	0	60	0.97
91993--92053	21	2.7	21	77	10	59	42	0	0	57	0.98
92504--92535	3	10.7	3	100	0	64	68	0	0	31	0.90
94307--94331	13	1.9	13	100	0	50	44	0	0	56	0.99
95161--95195	11	3.3	11	88	4	54	8	22	2	65	1.34
95855--96163	50	6.2	50	93	0	510	29	19	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100539--100847	50	6.2	50	92	0	474	30	18	21	30	1.97

Tables:   1

The End!