Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold76
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2182696
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.29
Warning! 286211 characters in sequence are not A, C, G, or T
File 12 of 13
Found at i:2032787 original size:79 final size:77
Alignment explanation
Indices: 2032574--2032813 Score: 293
Period size: 79 Copynumber: 3.1 Consensus size: 77
2032564 TCATTCATGT
* *
2032574 TTTTATTTCTAAAATATCGATTTTCCACCATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGA
1 TTTTATTTCAAAAATA-CGATTTTCCACAATCG-GGATACTCCAACCCCGTTATTTTCGAGGGGA
* * *
2032639 TGCTCCAACCCTGG
64 TACTCCAACCCCGA
* ** * * * *
2032653 TTTTTTTTCAACCAT-CTATTTTTCACAATCGGAGGTACTCCAACCCCGTTATTTTCGAAGGGAT
1 TTTTATTTCAAAAATACGATTTTCCACAATCGG-GATACTCCAACCCCGTTATTTTCGAGGGGAT
*
2032717 ACTCCAACCCCAA
65 ACTCCAACCCCGA
*
2032730 TTTTATTTCAAAAATACCGATTTTCCACAATCGGCGATACTCCAACCCCATTATTTTCGAGGGGA
1 TTTTATTTCAAAAATA-CGATTTTCCACAATCGG-GATACTCCAACCCCGTTATTTTCGAGGGGA
*
2032795 TACTCCAACCTCGA
64 TACTCCAACCCCGA
2032809 TTTTA
1 TTTTA
2032814 CTAACATGTT
Statistics
Matches: 134, Mismatches: 24, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
76 1 0.01
77 63 0.47
79 70 0.52
ACGTcount: A:0.26, C:0.27, G:0.13, T:0.33
Consensus pattern (77 bp):
TTTTATTTCAAAAATACGATTTTCCACAATCGGGATACTCCAACCCCGTTATTTTCGAGGGGATA
CTCCAACCCCGA
Found at i:2037733 original size:52 final size:52
Alignment explanation
Indices: 2037585--2037713 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
2037575 CGAAATATGA
2037585 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
2037637 AAATTTGCTTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
2037689 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
2037714 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:2037740 original size:13 final size:13
Alignment explanation
Indices: 2037722--2037746 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2037712 CAAAGATCAG
2037722 TGTATCGATACAA
1 TGTATCGATACAA
2037735 TGTATCGATACA
1 TGTATCGATACA
2037747 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2037809 original size:13 final size:13
Alignment explanation
Indices: 2037791--2037842 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
2037781 AGCTTCGTAG
2037791 CGATACATTGTAT
1 CGATACATTGTAT
2037804 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
2037823 CGATACATTGTAT
1 CGATACATTGTAT
2037836 CGATACA
1 CGATACA
2037843 ATTCGTTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:2039355 original size:78 final size:79
Alignment explanation
Indices: 2039261--2039442 Score: 177
Period size: 78 Copynumber: 2.3 Consensus size: 79
2039251 GAGACCATGG
* * * ** * * **
2039261 CTTTTTAACTTCAGTTTCATATCTTTCATTGAAACTGAATTTGTTAGGTTTACTTTTGTACC-TC
1 CTTTTTAAGTTTAGTTTCATACCTTTCATCAAAACAGAATCTGTTAGGTTTACTTTCATACCTTC
*
2039325 TATCATGATCAAGC
66 TATCAAGATCAAGC
* ** * * *
2039339 CTTTTTGAGTTTAGTTTTGTACCTTTCATCAAAACAGAGTCTGTTAGGTTTAGTTTCATACCTTT
1 CTTTTTAAGTTTAGTTTCATACCTTTCATCAAAACAGAATCTGTTAGGTTTACTTTCATACCTTC
* *
2039404 TATTAAGATCGAGC
66 TATCAAGATCAAGC
* *
2039418 TTTTTTAAGTTTAGTTTCATGCCTT
1 CTTTTTAAGTTTAGTTTCATACCTT
2039443 CCATAGAAAT
Statistics
Matches: 80, Mismatches: 23, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
78 48 0.60
79 32 0.40
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.47
Consensus pattern (79 bp):
CTTTTTAAGTTTAGTTTCATACCTTTCATCAAAACAGAATCTGTTAGGTTTACTTTCATACCTTC
TATCAAGATCAAGC
Found at i:2040773 original size:41 final size:41
Alignment explanation
Indices: 2040724--2040809 Score: 163
Period size: 41 Copynumber: 2.1 Consensus size: 41
2040714 GCTAGTTAAA
2040724 AAAATCTAAAGTACGAGAATTATTATTAAATTCTAAAAATC
1 AAAATCTAAAGTACGAGAATTATTATTAAATTCTAAAAATC
*
2040765 AAAATCTAAAGTACGAGAATTATTATTAAATTTTAAAAATC
1 AAAATCTAAAGTACGAGAATTATTATTAAATTCTAAAAATC
2040806 AAAA
1 AAAA
2040810 CCAATTTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.53, C:0.08, G:0.07, T:0.31
Consensus pattern (41 bp):
AAAATCTAAAGTACGAGAATTATTATTAAATTCTAAAAATC
Found at i:2042094 original size:41 final size:41
Alignment explanation
Indices: 2042045--2042130 Score: 163
Period size: 41 Copynumber: 2.1 Consensus size: 41
2042035 GTCAATTAAA
2042045 AAAATCTAAAGTACAAGAATTATTATTAAATTCTAAAAATC
1 AAAATCTAAAGTACAAGAATTATTATTAAATTCTAAAAATC
*
2042086 AAAATCTAAAGTACGAGAATTATTATTAAATTCTAAAAATC
1 AAAATCTAAAGTACAAGAATTATTATTAAATTCTAAAAATC
2042127 AAAA
1 AAAA
2042131 CCAATTTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (41 bp):
AAAATCTAAAGTACAAGAATTATTATTAAATTCTAAAAATC
Found at i:2043416 original size:41 final size:41
Alignment explanation
Indices: 2043371--2043450 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
2043361 GTTAAAAAAA
*
2043371 TAAAGTACGAGAATTATTATTAAATTCTAAAAATCAAAATC
1 TAAAGTACGAGAATTATTATTAAATTATAAAAATCAAAATC
*
2043412 TAAAGTACGAGAATTGTTATTAAATTATAAAAATCAAAA
1 TAAAGTACGAGAATTATTATTAAATTATAAAAATCAAAA
2043451 CCAATTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.31
Consensus pattern (41 bp):
TAAAGTACGAGAATTATTATTAAATTATAAAAATCAAAATC
Found at i:2049158 original size:22 final size:22
Alignment explanation
Indices: 2049103--2049158 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
2049093 TTCATAAGGG
*
2049103 AAAGCCAAAAAAAATGAAAAAA
1 AAAGGCAAAAAAAATGAAAAAA
*
2049125 AAAGAG-AGAAAAAAAAGAAAAAGA
1 AAAG-GCA-AAAAAAATGAAAAA-A
2049149 AAAGGCAAAA
1 AAAGGCAAAA
2049159 GTAAAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
22 5 0.18
23 17 0.61
24 6 0.21
ACGTcount: A:0.77, C:0.05, G:0.16, T:0.02
Consensus pattern (22 bp):
AAAGGCAAAAAAAATGAAAAAA
Found at i:2055462 original size:8 final size:8
Alignment explanation
Indices: 2055449--2055575 Score: 68
Period size: 8 Copynumber: 15.6 Consensus size: 8
2055439 TTTGATAATA
2055449 TATATATT
1 TATATATT
2055457 TATATATAT
1 TATATAT-T
2055466 TAATATATT
1 T-ATATATT
*
2055475 TTTATATT
1 TATATATT
*
2055483 TTTATATT
1 TATATATT
2055491 T-TATA-T
1 TATATATT
2055497 T-T-TATT
1 TATATATT
* * *
2055503 TAAAAAAT
1 TATATATT
2055511 TATATATT
1 TATATATT
2055519 TATATAAATTT
1 TATAT--A-TT
2055530 TAATATATT
1 T-ATATATT
*
2055539 AATA-ATT
1 TATATATT
*
2055546 TATAT-TA
1 TATATATT
2055553 TATAATTATT
1 TAT-A-TATT
*
2055563 AATATATT
1 TATATATT
2055571 TATAT
1 TATAT
2055576 TATATTTATA
Statistics
Matches: 93, Mismatches: 13, Indels: 26
0.70 0.10 0.20
Matches are distributed among these distances:
5 2 0.02
6 5 0.05
7 14 0.15
8 46 0.49
9 8 0.09
10 11 0.12
11 3 0.03
12 4 0.04
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TATATATT
Found at i:2055473 original size:20 final size:20
Alignment explanation
Indices: 2055448--2055591 Score: 71
Period size: 20 Copynumber: 7.5 Consensus size: 20
2055438 ATTTGATAAT
2055448 ATATATATTTATATATATTA
1 ATATATATTTATATATATTA
2055468 ATATAT-TTT-TATAT-TT-
1 ATATATATTTATATATATTA
* *
2055484 TTATAT-TTTATATTTTATTTA
1 ATATATATTTATA-TATA-TTA
*
2055505 A-A-A-AATTATATAT-TT-
1 ATATATATTTATATATATTA
*
2055520 ATATAAATTT-TAATATATTA
1 ATATATATTTAT-ATATATTA
*
2055540 ATAATTTATATTATATA-ATTA
1 AT-ATATAT-TTATATATATTA
* *
2055561 TTAATATATTTATATTATATTT
1 AT-ATATATTTATA-TATATTA
2055583 ATAT-TATTT
1 ATATATATTT
2055592 TTAAAATAAT
Statistics
Matches: 95, Mismatches: 12, Indels: 34
0.67 0.09 0.24
Matches are distributed among these distances:
15 1 0.01
16 11 0.12
17 6 0.06
18 16 0.17
19 11 0.12
20 21 0.22
21 19 0.20
22 9 0.09
23 1 0.01
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
ATATATATTTATATATATTA
Found at i:2055494 original size:15 final size:16
Alignment explanation
Indices: 2055469--2055499 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
2055459 TATATATTAA
2055469 TATATTTTTATATTTT
1 TATATTTTTATATTTT
2055485 TATA-TTTTATATTTT
1 TATATTTTTATATTTT
2055500 ATTTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TATATTTTTATATTTT
Found at i:2055545 original size:17 final size:18
Alignment explanation
Indices: 2055512--2055574 Score: 57
Period size: 19 Copynumber: 3.7 Consensus size: 18
2055502 TTAAAAAATT
2055512 ATATATTTATATAAATTTTA
1 ATATA-TTATAT-AATTTTA
2055532 ATATATTA-ATAA--TT-
1 ATATATTATATAATTTTA
2055546 -TATATTATATAATTATTA
1 ATATATTATATAATT-TTA
2055564 ATATATT-TATA
1 ATATATTATATA
2055575 TTATATTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 7 0.19
14 4 0.11
15 2 0.05
17 4 0.11
18 6 0.16
19 9 0.24
20 5 0.14
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATATATTATATAATTTTA
Found at i:2055558 original size:25 final size:26
Alignment explanation
Indices: 2055512--2055588 Score: 88
Period size: 25 Copynumber: 3.0 Consensus size: 26
2055502 TTAAAAAATT
* *
2055512 ATATATTTATATAAATTTTAATATATTA
1 ATATATTTATAT-TA-TATAATATATTA
2055540 ATA-ATTTATATTATATAAT-TATTA
1 ATATATTTATATTATATAATATATTA
*
2055564 ATATATTTATATTATAT-TTATATTA
1 ATATATTTATATTATATAATATATTA
2055589 TTTTTAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
24 9 0.20
25 23 0.52
26 1 0.02
27 8 0.18
28 3 0.07
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
ATATATTTATATTATATAATATATTA
Found at i:2055579 original size:11 final size:11
Alignment explanation
Indices: 2055533--2055594 Score: 61
Period size: 11 Copynumber: 5.2 Consensus size: 11
2055523 TAAATTTTAA
2055533 TATATTAATAATT
1 TATATT-AT-ATT
2055546 TATATTATATAAT
1 TATATTATAT--T
*
2055559 TATTAATATATT
1 TA-TATTATATT
2055571 TATATTATATT
1 TATATTATATT
*
2055582 TATATTATTTT
1 TATATTATATT
2055593 TA
1 TA
2055595 AAATAATTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
11 22 0.51
12 5 0.12
13 9 0.21
14 7 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATTATATT
Found at i:2055840 original size:17 final size:19
Alignment explanation
Indices: 2055810--2055845 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
2055800 AAATATTATA
2055810 TTTATATTATATTATTTTT
1 TTTATATTATATTATTTTT
2055829 TTTAT-TTA-ATTATTTTT
1 TTTATATTATATTATTTTT
2055846 ATATTACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 3 0.18
19 5 0.29
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTATATTATATTATTTTT
Found at i:2056771 original size:22 final size:21
Alignment explanation
Indices: 2056738--2056800 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
2056728 TAATTTTCAC
* *
2056738 AAAAAAATATAAATAAGTCTA
1 AAAAAAAAATAAATAAGTATA
2056759 AATAAAAAAATAAATAAAGTATA
1 AA-AAAAAAATAAAT-AAGTATA
2056782 AAAAATAATAAT-AATAAGT
1 AAAAA-AA-AATAAATAAGT
2056801 GTTTTTCGAG
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
21 2 0.06
22 18 0.50
23 13 0.36
24 3 0.08
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.24
Consensus pattern (21 bp):
AAAAAAAAATAAATAAGTATA
Found at i:2056778 original size:23 final size:23
Alignment explanation
Indices: 2056739--2056800 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
2056729 AATTTTCACA
*
2056739 AAAAAATATAAATAAGTCTAAAT
1 AAAAAATATAAATAAGTATAAAT
2056762 AAAAAA-ATAAATAAAGTATAAA-
1 AAAAAATATAAAT-AAGTATAAAT
*
2056784 AAATAATA-ATAATAAGT
1 AAAAAATATA-AATAAGT
2056801 GTTTTTCGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
22 16 0.47
23 18 0.53
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (23 bp):
AAAAAATATAAATAAGTATAAAT
Found at i:2057205 original size:13 final size:13
Alignment explanation
Indices: 2057187--2057212 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2057177 CATTATTCCA
2057187 TGTATCGATACAT
1 TGTATCGATACAT
2057200 TGTATCGATACAT
1 TGTATCGATACAT
2057213 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2059756 original size:79 final size:79
Alignment explanation
Indices: 2059667--2059978 Score: 323
Period size: 79 Copynumber: 3.9 Consensus size: 79
2059657 TTAATCATCA
* * * *
2059667 GGGATGCTCCAACCTCGTTATTTCCGAGGGGATACTCCAACTCCTGCTTTATTCTTAAAATATTG
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCCGTTTTATTCTTAAAATATTG
2059732 ATTTCTCATAATCG
66 ATTTCTCATAATCG
* * *
2059746 GGGATACTCCAACCTCGTTATTTCCGAAGGGATACTCCAAC-CCCGGTTTTATT-TCCAAAATAT
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCC-GTTTTATTCT-TAAAATAT
* **
2059809 TGATTTCTCGTAATTA
64 TGATTTCTCATAATCG
*
2059825 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAA-TCCCGATTTTATTTCCT--AATCA
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCCG-TTTTA-TTCTTAAAAT-A
* * *
2059887 TCGATTTTTCATAACCG
63 TTGATTTCTCATAATCG
*** * *
2059904 GGGATACTCCAACCCCGTTATTTTTAAGGGGATACCCCAAC-CCCGTTATTA-TCTCCAAAATAT
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCCGTT-TTATTCT-TAAAATAT
*
2059967 TAAATTTCTCAT
64 T-GATTTCTCAT
2059979 CGGGACATAT
Statistics
Matches: 193, Mismatches: 27, Indels: 25
0.79 0.11 0.10
Matches are distributed among these distances:
77 2 0.01
78 9 0.05
79 169 0.88
80 13 0.07
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.34
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCCGTTTTATTCTTAAAATATTG
ATTTCTCATAATCG
Found at i:2059961 original size:158 final size:158
Alignment explanation
Indices: 2059666--2059976 Score: 407
Period size: 158 Copynumber: 2.0 Consensus size: 158
2059656 GTTAATCATC
* * * * *
2059666 AGGGATGCTCCAACCTCGTTATTTCCGAGGGGATACTCCAACTCCTGCTTTATTCTTAAAATATT
1 AGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCCGCTTTATTCCT-AAATATC
* * *
2059731 GATTTCTCATAATCGGGGATACTCCAACCTCGTTATTTCCGAAGGGATACTCCAACCCCGGTTTT
65 GATTTCTCATAACCGGGGATACTCCAACCCCGTTATTTCCGAAGGGATACCCCAACCCCGGTTTT
* *
2059796 ATTTCCAAAATATT-GATTTCTCGTAATT
130 ATCTCCAAAATATTAAATTTCTCGTAATT
*
2059824 AGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAA-TCCCGATTTTATTTCCT-AATCA
1 AGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCCG-CTTTA-TTCCTAAAT-A
* **
2059887 TCGATTTTTCATAACCGGGGATACTCCAACCCCGTTATTT-TTAAGGGGATACCCCAACCCC-GT
63 TCGATTTCTCATAACCGGGGATACTCCAACCCCGTTATTTCCGAA-GGGATACCCCAACCCCGGT
2059950 TATTATCTCCAAAATATTAAATTTCTC
127 T-TTATCTCCAAAATATTAAATTTCTC
2059977 ATCGGGACAT
Statistics
Matches: 133, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
157 12 0.09
158 110 0.83
159 11 0.08
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (158 bp):
AGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCCGCTTTATTCCTAAATATCG
ATTTCTCATAACCGGGGATACTCCAACCCCGTTATTTCCGAAGGGATACCCCAACCCCGGTTTTA
TCTCCAAAATATTAAATTTCTCGTAATT
Found at i:2063906 original size:17 final size:19
Alignment explanation
Indices: 2063874--2063908 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
2063864 ATGATTAACA
2063874 AAAAAATATAATATTACTT
1 AAAAAATATAATATTACTT
2063893 AAAAAAT-TAA-ATTACT
1 AAAAAATATAATATTACT
2063909 AATGTAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAAATATAATATTACTT
Found at i:2064232 original size:22 final size:23
Alignment explanation
Indices: 2064183--2064239 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
2064173 TTTAATATTT
* *
2064183 TTATGTATTTATGTCATATTTATA
1 TTATGT-TTTATATCATATATATA
2064207 TTAT-TTTTATATCATATCATAT-
1 TTATGTTTTATATCATAT-ATATA
2064229 TTATGTTTTAT
1 TTATGTTTTAT
2064240 TTTAATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 15 0.52
23 10 0.34
24 4 0.14
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.61
Consensus pattern (23 bp):
TTATGTTTTATATCATATATATA
Found at i:2064454 original size:32 final size:33
Alignment explanation
Indices: 2064408--2064473 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
2064398 AATATTTTTT
*
2064408 TTATATAAAATTTAATATATTAA-AAATTTATA
1 TTATATAAAATTTAAAATATTAATAAATTTATA
* *
2064440 TTATATAAATTTTAAAATATTAATACATTTATA
1 TTATATAAAATTTAAAATATTAATAAATTTATA
2064473 T
1 T
2064474 ATTCATATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 21 0.70
33 9 0.30
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (33 bp):
TTATATAAAATTTAAAATATTAATAAATTTATA
Found at i:2068944 original size:52 final size:51
Alignment explanation
Indices: 2068866--2069014 Score: 235
Period size: 52 Copynumber: 2.9 Consensus size: 51
2068856 CGAAATATGA
2068866 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* *
2068918 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
**
2068970 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
2069015 ATGTATCGAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 85 0.96
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:2069021 original size:13 final size:13
Alignment explanation
Indices: 2069003--2069027 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2068993 CAAAGATCAG
2069003 TGTATCGATACAA
1 TGTATCGATACAA
2069016 TGTATCGATACA
1 TGTATCGATACA
2069028 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2069107 original size:13 final size:13
Alignment explanation
Indices: 2069089--2069113 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2069079 ACAAAAAAAA
2069089 TGTATCGATACAT
1 TGTATCGATACAT
2069102 TGTATCGATACA
1 TGTATCGATACA
2069114 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2070677 original size:379 final size:377
Alignment explanation
Indices: 2069968--2070702 Score: 1445
Period size: 377 Copynumber: 1.9 Consensus size: 377
2069958 GTATTTAGCG
2069968 ATCTAAGGTTTAAATCAATATTGATCATGGGTTTTACAACTCTTTGTGGGGCTCTATCATTTGGT
1 ATCTAAGGTTTAAATCAATATTGATCATGGGTTTTACAACTCTTTGTGGGGCTCTATCATTTGGT
2070033 ATCAAAGCTTAGGCTCCAAATCAAGTTTTACCCTATCCTTTTCCATTTTAATTATTTAAGTTATT
66 ATCAAAGCTTAGGCTCCAAATCAAGTTTTACCCTATCCTTTTCCATTTTAATTATTTAAGTTATT
2070098 CCATCTTTCATAAAAAAAAAAAATTTGTTTCATCTATTCTTTGTTCTTATTTTTGTGTTTTGCAT
131 CCATCTTTCAT-AAAAAAAAAAATTTGTTTCATCTATTCTTTGTTCTTATTTTTGTGTTTTGCAT
2070163 CTCTTCATGATCTTTTGTTACTTCCTTTATTTTGTTCAACATTGGTTTAATTATGTTCATCTAGT
195 CTCTTCATGATCTTTTGTTACTTCCTTTATTTTGTTCAACATTGGTTTAATTATGTTCATCTAGT
2070228 TGTTGTTGTTTATGTTTTTGTTACCAAATAGTTAAAAAAATTGAACAAAAGAAGTTAGAACATTA
260 TGTTGTTGTTTATGTTTTTGTTACCAAATAGTTAAAAAAATTGAACAAAAGAAGTTAGAACATT-
2070293 AAAAAAAAAAACTGTTTGCTAATCTTTCATAAAATTCAACAAAACTGTTTGCTA
324 AAAAAAAAAAACTGTTTGCTAATCTTTCATAAAATTCAACAAAACTGTTTGCTA
2070347 ATCTAAGGTTTAAATCAATATTGATCATGGGTTTTACAACTCTTTGTGGGGCTCTATCATTTGGT
1 ATCTAAGGTTTAAATCAATATTGATCATGGGTTTTACAACTCTTTGTGGGGCTCTATCATTTGGT
2070412 ATCAAAGCTTAGGCTCCAAATCAAGTTTTACCCTATCCTTTTCCATTTTAATTATTTAAGTTATT
66 ATCAAAGCTTAGGCTCCAAATCAAGTTTTACCCTATCCTTTTCCATTTTAATTATTTAAGTTATT
2070477 CCATCTTTCAT-AAAAAAAAAATTTGTTTCATCTATTCTTTGTTCTTATTTTTGTGTTTTGCATC
131 CCATCTTTCATAAAAAAAAAAATTTGTTTCATCTATTCTTTGTTCTTATTTTTGTGTTTTGCATC
2070541 TCTTCATGATCTTTTGTTACTTCCTTTATTTTGTTCAACATTGGTTTAATTATGTTCATCTAGTT
196 TCTTCATGATCTTTTGTTACTTCCTTTATTTTGTTCAACATTGGTTTAATTATGTTCATCTAGTT
2070606 GTTGTTGTTTATGTTTTTGTTACCAAATAGTTAAAAAAATTGAACAAAAGAAGTTAGAACATTAA
261 GTTGTTGTTTATGTTTTTGTTACCAAATAGTTAAAAAAATTGAACAAAAGAAGTTAGAACATTAA
2070671 AAAAAAAAACTGTTTGCTAATCTTTCATAAAA
326 AAAAAAAAACTGTTTGCTAATCTTTCATAAAA
2070703 AACTAGTCAT
Statistics
Matches: 356, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
376 34 0.10
377 181 0.51
379 141 0.40
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (377 bp):
ATCTAAGGTTTAAATCAATATTGATCATGGGTTTTACAACTCTTTGTGGGGCTCTATCATTTGGT
ATCAAAGCTTAGGCTCCAAATCAAGTTTTACCCTATCCTTTTCCATTTTAATTATTTAAGTTATT
CCATCTTTCATAAAAAAAAAAATTTGTTTCATCTATTCTTTGTTCTTATTTTTGTGTTTTGCATC
TCTTCATGATCTTTTGTTACTTCCTTTATTTTGTTCAACATTGGTTTAATTATGTTCATCTAGTT
GTTGTTGTTTATGTTTTTGTTACCAAATAGTTAAAAAAATTGAACAAAAGAAGTTAGAACATTAA
AAAAAAAAACTGTTTGCTAATCTTTCATAAAATTCAACAAAACTGTTTGCTA
Found at i:2071137 original size:18 final size:18
Alignment explanation
Indices: 2071114--2071151 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
2071104 TGAGTGAAAC
*
2071114 ATTTGTTGTTTGACATTA
1 ATTTGTTGTGTGACATTA
2071132 ATTTGTTGTGTGACATTA
1 ATTTGTTGTGTGACATTA
2071150 AT
1 AT
2071152 CTGAAGGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.05, G:0.18, T:0.53
Consensus pattern (18 bp):
ATTTGTTGTGTGACATTA
Found at i:2076750 original size:52 final size:52
Alignment explanation
Indices: 2076672--2076800 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
2076662 TGAAATATGA
2076672 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATAAATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATAAATCTGGGC
* * *
2076724 AAATTTGCCTGTATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATAAATCTGGGC
*
2076776 AAATTTTCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
2076801 AAGATCAATG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATAAATCTGGGC
Found at i:2076813 original size:52 final size:51
Alignment explanation
Indices: 2076672--2076820 Score: 176
Period size: 52 Copynumber: 2.9 Consensus size: 51
2076662 TGAAATATGA
* *
2076672 AAATTTGCCTGCATGTATCGATAC-ATTTCATAGTGTATCGATAAATCTGGGC
1 AAATTTGCCTGCATGTATCGATACAATATCA-A-TGTATCGATACATCTGGGC
* * *
2076724 AAATTTGCCTGTATGTATCGATACATTTTAT-AGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA--ATATCAATGTATCGATACATCTGGGC
* *
2076776 AAATTTTCCTGCATGTATCGATACAAAGATCAATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATAC-AATATCAATGTATCGATACA
2076821 ATATATCGAT
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
51 2 0.02
52 76 0.93
53 1 0.01
54 1 0.01
55 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACAATATCAATGTATCGATACATCTGGGC
Found at i:2076902 original size:19 final size:20
Alignment explanation
Indices: 2076878--2076928 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
2076868 GCTTACATTA
2076878 TATCGATACAAAAC-ATATG
1 TATCGATACAAAACTATATG
* *
2076897 TATCGATACAACACTTTATG
1 TATCGATACAAAACTATATG
*
2076917 TATCAATACAAA
1 TATCGATACAAA
2076929 TCGTTGAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (20 bp):
TATCGATACAAAACTATATG
Found at i:2077845 original size:22 final size:22
Alignment explanation
Indices: 2077795--2077843 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
2077785 TGTTTTTCTA
2077795 ATTTTTCTACTTATTTTCTCCT
1 ATTTTTCTACTTATTTTCTCCT
2077817 ATTTTTCT-CTT-TTTTCTCTCT
1 ATTTTTCTACTTATTTTCTC-CT
*
2077838 CTTTTT
1 ATTTTT
2077844 TCAGCTGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 7 0.28
21 10 0.40
22 8 0.32
ACGTcount: A:0.08, C:0.22, G:0.00, T:0.69
Consensus pattern (22 bp):
ATTTTTCTACTTATTTTCTCCT
Found at i:2078125 original size:14 final size:13
Alignment explanation
Indices: 2078106--2078150 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 13
2078096 GGTGAATGAC
2078106 TAAATAAAATAAAA
1 TAAAT-AAATAAAA
2078120 TAAATAAATAAAAA
1 TAAATAAAT-AAAA
2078134 TAAATTAAA-AAAA
1 TAAA-TAAATAAAA
2078147 TAAA
1 TAAA
2078151 AGGCTGAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 12 0.41
14 13 0.45
15 4 0.14
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (13 bp):
TAAATAAATAAAA
Found at i:2078135 original size:19 final size:19
Alignment explanation
Indices: 2078106--2078151 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
2078096 GGTGAATGAC
2078106 TAAAT-AAAATAAAATAAA
1 TAAATAAAAATAAAATAAA
*
2078124 TAAATAAAAATAAATTAAA
1 TAAATAAAAATAAAATAAA
*
2078143 AAAATAAAA
1 TAAATAAAA
2078152 GGCTGAAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (19 bp):
TAAATAAAAATAAAATAAA
Found at i:2078144 original size:11 final size:10
Alignment explanation
Indices: 2078106--2078151 Score: 53
Period size: 9 Copynumber: 4.9 Consensus size: 10
2078096 GGTGAATGAC
2078106 TAAAT-AAAA
1 TAAATAAAAA
*
2078115 TAAA-ATAAA
1 TAAATAAAAA
2078124 TAAATAAAAA
1 TAAATAAAAA
*
2078134 TAAATTAAAA
1 TAAATAAAAA
2078144 -AAATAAAA
1 TAAATAAAA
2078152 GGCTGAAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 18 0.58
10 13 0.42
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:2078732 original size:165 final size:164
Alignment explanation
Indices: 2078374--2079401 Score: 1195
Period size: 166 Copynumber: 6.2 Consensus size: 164
2078364 TTAAATCGAA
* * * * *
2078374 AAAAAT-TCCTCCGAAAAAATTTATGGAGTAGAAAACTCAATTTTTCGGAGAAAGGAG-ATTTTA
1 AAAAATCTCCT-CGAAAAAATTTACGGAGTAGAAAACTC-ATATTTCGAAAAAAGGAGAATTTCA
* * **
2078437 AGGAAAAAAATTCAAAATTCATGTAAATGAATGAATTTTTGAAAACTGAATTAATAAAAAATAAA
64 AGG-AAAAAATTCAAAATTTATGGAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAA
2078502 TAATAATATTTGATGAATTTTAAAAATC-AAAACCAAG
128 TAATAATATTTGATGAATTTTAAAAA-CAAAAACCAAG
* * * * * *
2078539 AAAAATCTCCCCAAAAAAAATTACGGAGTAGAAAAATTCATATTTTGAAAAAAGGAGAATTTAAA
1 AAAAATCTCCTCGAAAAAATTTACGGAGTAG-AAAACTCATATTTCGAAAAAAGGAGAATTTCAA
* * *
2078604 GG-AAAAATTCAAAATTTATGGAAATGAAAGAATTTTTGAAAATTGAATTAATCTGAAATAAATA
65 GGAAAAAATTCAAAATTTATGGAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAATA
* * *
2078668 ACAATATTTGATGAATTCTAAAAACAAAAAACCATG
130 ATAATATTTGATGAATTTTAAAAAC-AAAAACCAAG
* * * *
2078704 AAAAATCTGCTCGAAAAAATTTACGGAGTAGAAAACTAAGTATTTTGAAAAAA-GAGGAGTTTCA
1 AAAAATCTCCTCGAAAAAATTTACGGAGTAGAAAACTCA-TATTTCGAAAAAAGGA-GAATTTCA
* *
2078768 AGGAAAAAATT--TAATTTATGGAAATGAATGAATTTTTGAAAACAGAATTAATATGAAATAAAT
64 AGGAAAAAATTCAAAATTTATGGAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAAT
* * *
2078831 AATAGTATTTTATGAATTTTAAAAATGAAAAACCAAG
129 AATAATATTTGATGAATTTTAAAAA-CAAAAACCAAG
* * *
2078868 AAAAATAC-CCTTGAAAAAAATTACGGAGTAGAAAACTCTGTATTTCGAAAAAAAGG-GAATTTC
1 AAAAAT-CTCCTCGAAAAAATTTACGGAGTAGAAAACTC-ATATTTCG-AAAAAAGGAGAATTTC
* * * * *
2078931 AAGG-AAAAATTTAAAATTTATGAAAATCAATGAATTTTTGAAAACTGAATTAATACGAAATAGA
63 AAGGAAAAAATTCAAAATTTATGGAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAA
* * *
2078995 TAATAATATTTGATAAATCTTAAAGATA-AAAAACCGAG
128 TAATAATATTTGATGAATTTTAAA-A-ACAAAAACCAAG
* * * *
2079033 AAAAAGTCTCC-CGAAAAAATTTATGGAGTAGAAAACTCCGTATTTCGAAAAAAAGAAAATTTCA
1 AAAAA-TCTCCTCGAAAAAATTTACGGAGTAGAAAACT-CATATTTCGAAAAAAGGAGAATTTCA
*
2079097 AGGAAAAAATT-AAAATTTATAGAAATGAATGAAATTTTTGAAAACTGAATTAATATGAAATAAA
64 AGGAAAAAATTCAAAATTTATGGAAATGAATG-AATTTTTGAAAACTGAATTAATATGAAATAAA
2079161 TAATAATATTTGATGAATTTTAAAAATCAAAAACCAAG
128 TAATAATATTTGATGAATTTTAAAAA-CAAAAACCAAG
* * * * * * *
2079199 AAAAATCCCCTTGAAAAAATTTACGAAGTAGAAAACTCCGTATTTCGGAAAAAGAAAAATTTCAA
1 AAAAATCTCCTCGAAAAAATTTACGGAGTAGAAAACT-CATATTTCGAAAAAAGGAGAATTTCAA
* * *
2079264 GAAAAAAATTCAAAATTTATAGAAATGAATGAATTTTTGAAAAGTGAATTAATATGAAATAAATA
65 GGAAAAAATTCAAAATTTATGGAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAATA
* *
2079329 ATAATATTTGATTAATTTTAAAAATTAAAAA-CAATG
130 ATAATATTTGATGAATTTTAAAAA-CAAAAACCAA-G
* ** *
2079365 AAAAATC-CTTCTGAAAAAATTTATAGAGAAGAAAACT
1 AAAAATCTCCTC-GAAAAAATTTACGGAGTAGAAAACT
2079402 TCGTAATTGG
Statistics
Matches: 747, Mismatches: 87, Indels: 57
0.84 0.10 0.06
Matches are distributed among these distances:
163 8 0.01
164 218 0.29
165 249 0.33
166 251 0.34
167 21 0.03
ACGTcount: A:0.52, C:0.08, G:0.13, T:0.28
Consensus pattern (164 bp):
AAAAATCTCCTCGAAAAAATTTACGGAGTAGAAAACTCATATTTCGAAAAAAGGAGAATTTCAAG
GAAAAAATTCAAAATTTATGGAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAATAA
TAATATTTGATGAATTTTAAAAACAAAAACCAAG
Found at i:2079465 original size:166 final size:162
Alignment explanation
Indices: 2078374--2079415 Score: 1121
Period size: 165 Copynumber: 6.3 Consensus size: 162
2078364 TTAAATCGAA
* ** * * * * * *
2078374 AAAAATTCCTCC-GAAAAAATTTATGGAGTAGAAAACTCAATTTTTCGGAGAAAGGAGATTTTAA
1 AAAAA-TCCTCCTGAAAAAATTTACGGAGTAGAAAACTCCGTATTTCGAAAAAAGAAAATTTCAA
* * **
2078438 GGAAAAAAATTCAAAATTCATGTAAATGAATGAATTTTTGAAAACTGAATTAATAAAAAATAAAT
65 GG-AAAAAATT--AAATTTAT-AAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAAT
*
2078503 AATAATATTTGATGAATTTTAAAAAT-CAAAACCAAG
126 AATAATATTTGATGAATTTTAAAAATAAAAAACCAAG
** * * * * * * *
2078539 AAAAAT-CTCCCCAAAAAAAATTACGGAGTAGAAAAATTCATATTTTGAAAAAAGGAGAATTTAA
1 AAAAATCCT-CCTGAAAAAATTTACGGAGTAGAAAACTCCGTATTTCGAAAAAA-GAAAATTTCA
* * * *
2078603 AGG-AAAAATTCAAAATTTATGGAAATGAAAGAATTTTTGAAAATTGAATTAATCTGAAATAAAT
64 AGGAAAAAATT--AAATTTAT-AAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAAT
* * * *
2078667 AACAATATTTGATGAATTCTAAAAACAAAAAACCATG
126 AATAATATTTGATGAATTTTAAAAATAAAAAACCAAG
* ** * * *
2078704 AAAAAT-CTGCTCGAAAAAATTTACGGAGTAGAAAACTAAGTATTTTGAAAAAAGAGGAGTTTCA
1 AAAAATCCTCCT-GAAAAAATTTACGGAGTAGAAAACTCCGTATTTCGAAAAAAGA-AAATTTCA
* * *
2078768 AGGAAAAAATTTAATTTATGGAAATGAATGAATTTTTGAAAACAGAATTAATATGAAATAAATAA
64 AGGAAAAAATTAAATTTAT-AAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAATAA
* * *
2078833 TAGTATTTTATGAATTTTAAAAATGAAAAACCAAG
128 TAATATTTGATGAATTTTAAAAATAAAAAACCAAG
* * * **
2078868 AAAAATACC-CTTGAAAAAAATTACGGAGTAGAAAACTCTGTATTTCGAAAAAAAGGGAATTTCA
1 AAAAAT-CCTCCTGAAAAAATTTACGGAGTAGAAAACTCCGTATTTCG-AAAAAAGAAAATTTCA
* * * *
2078932 AGGAAAAATTTAAAATTTATGAAAATCAATGAATTTTTGAAAACTGAATTAATACGAAATAGATA
64 AGGAAAAAATT-AAATTTAT-AAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAATA
* * * *
2078997 ATAATATTTGATAAATCTTAAAGATAAAAAACCGAG
127 ATAATATTTGATGAATTTTAAAAATAAAAAACCAAG
* *
2079033 AAAAAGT-CTCCCGAAAAAATTTATGGAGTAGAAAACTCCGTATTTCGAAAAAAAGAAAATTTCA
1 AAAAA-TCCTCCTGAAAAAATTTACGGAGTAGAAAACTCCGTATTTCG-AAAAAAGAAAATTTCA
2079097 AGGAAAAAATTAAAATTTATAGAAATGAATGAAATTTTTGAAAACTGAATTAATATGAAATAAAT
64 AGGAAAAAATT-AAATTTATA-AAATGAATG-AATTTTTGAAAACTGAATTAATATGAAATAAAT
*
2079162 AATAATATTTGATGAATTTTAAAAATCAAAAACCAAG
126 AATAATATTTGATGAATTTTAAAAATAAAAAACCAAG
* *
2079199 AAAAATCC-CCTTGAAAAAATTTACGAAGTAGAAAACTCCGTATTTCGGAAAAAGAAAAATTTCA
1 AAAAATCCTCC-TGAAAAAATTTACGGAGTAGAAAACTCCGTATTTCGAAAAAAG-AAAATTTCA
* *
2079263 AGAAAAAAATTCAAAATTTATAGAAATGAATGAATTTTTGAAAAGTGAATTAATATGAAATAAAT
64 AGGAAAAAATT--AAATTTATA-AAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAAT
* *
2079328 AATAATATTTGATTAATTTTAAAAATTAAAAA-CAATG
126 AATAATATTTGATGAATTTTAAAAATAAAAAACCAA-G
* ** * * * *
2079365 AAAAATCCTTCTGAAAAAATTTATAGAGAAGAAAACTTCGTAATTGGAAAA
1 AAAAATCCTCCTGAAAAAATTTACGGAGTAGAAAACTCCGTATTTCGAAAA
2079416 CATGAAAAAT
Statistics
Matches: 753, Mismatches: 103, Indels: 41
0.84 0.11 0.05
Matches are distributed among these distances:
163 2 0.00
164 216 0.29
165 272 0.36
166 242 0.32
167 21 0.03
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.28
Consensus pattern (162 bp):
AAAAATCCTCCTGAAAAAATTTACGGAGTAGAAAACTCCGTATTTCGAAAAAAGAAAATTTCAAG
GAAAAAATTAAATTTATAAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAATAATAA
TATTTGATGAATTTTAAAAATAAAAAACCAAG
Found at i:2080518 original size:43 final size:43
Alignment explanation
Indices: 2080470--2080600 Score: 142
Period size: 43 Copynumber: 3.1 Consensus size: 43
2080460 GATAGGTCAT
*
2080470 CAAGGGGATAAGAGGTTTACCAAGGACTAAGCTGACAGGTAAA
1 CAAGGGGATAAGAGGTTTACCGAGGACTAAGCTGACAGGTAAA
* * * *
2080513 TAA-GGGATGAAG-GG-TTACCCGAGGACTAAGCTGACAAGTCAC
1 CAAGGGGAT-AAGAGGTTTA-CCGAGGACTAAGCTGACAGGTAAA
* * * *
2080555 CGAGGGGATAAGAGGTTTATCGAGGACTGAGCCGACAGGTAAA
1 CAAGGGGATAAGAGGTTTACCGAGGACTAAGCTGACAGGTAAA
2080598 CAA
1 CAA
2080601 TGAGATAAAA
Statistics
Matches: 69, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
41 3 0.04
42 31 0.45
43 32 0.46
44 3 0.04
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (43 bp):
CAAGGGGATAAGAGGTTTACCGAGGACTAAGCTGACAGGTAAA
Found at i:2080926 original size:89 final size:89
Alignment explanation
Indices: 2080762--2081227 Score: 659
Period size: 89 Copynumber: 5.2 Consensus size: 89
2080752 CAAATTGGAA
* * * *
2080762 GGTGGTAACCATACGTCAAATCAAAATGGAAAGAATTTGACTAGGGTGGTTACCATACGTTC-GA
1 GGTGGTAACCATACGTCAAATCAAAATAGAAAGAATCTGACCAGGGTGGTAACCATACG-TCAGA
* * *
2080826 CTTGAAATGAGAAAAATTTCG-CCAG
65 CCTGAAATGAGAAGAGTTT-GACCAG
* *
2080851 GGTGGTAACCATATGTCAAATCAAAATAGAAAGAATCTGACGAGGGTGGTAACCATACGTCAGAC
1 GGTGGTAACCATACGTCAAATCAAAATAGAAAGAATCTGACCAGGGTGGTAACCATACGTCAGAC
2080916 CT-AAACTGAGAAGAGTTTTGACCAG
66 CTGAAA-TGAGAAGAG-TTTGACCAG
* *
2080941 GGTGGTAACCATACGTCAAATCAAAATGGAAAGAATCTGACCAGGGTGGTAACCATACGTCAAAC
1 GGTGGTAACCATACGTCAAATCAAAATAGAAAGAATCTGACCAGGGTGGTAACCATACGTCAGAC
* *
2081006 CTGAAATAAGAAGAGTCTGACCAG
66 CTGAAATGAGAAGAGTTTGACCAG
* * *
2081030 GGTGGTAACCATACATCAAATCAAAATAGAAAGAATCTAACCAGGGTGGTAACTATACGTCAGAC
1 GGTGGTAACCATACGTCAAATCAAAATAGAAAGAATCTGACCAGGGTGGTAACCATACGTCAGAC
2081095 CTGAAATGAGAAGAGTTTGACCAG
66 CTGAAATGAGAAGAGTTTGACCAG
* * * *
2081119 GGTGGTAACCATACGTTAAATTAAAATAGAAAGAATCTAACCATGGTGGTAACCATACGTCAGAC
1 GGTGGTAACCATACGTCAAATCAAAATAGAAAGAATCTGACCAGGGTGGTAACCATACGTCAGAC
* *
2081184 CTAAAATGAGAAGAGTTTGACCAA
66 CTGAAATGAGAAGAGTTTGACCAG
* *
2081208 GGCGGTAACCATATGTCAAA
1 GGTGGTAACCATACGTCAAA
2081228 CAGAAAGGAA
Statistics
Matches: 341, Mismatches: 31, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
88 5 0.01
89 255 0.75
90 78 0.23
91 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (89 bp):
GGTGGTAACCATACGTCAAATCAAAATAGAAAGAATCTGACCAGGGTGGTAACCATACGTCAGAC
CTGAAATGAGAAGAGTTTGACCAG
Found at i:2081062 original size:179 final size:178
Alignment explanation
Indices: 2080762--2081220 Score: 663
Period size: 179 Copynumber: 2.6 Consensus size: 178
2080752 CAAATTGGAA
* * *
2080762 GGTGGTAACCATACGTCAAATCAAAATGGAAAGAATTTGACTAGGGTGGTTACCATACGTTC-GA
1 GGTGGTAACCATACGTCAAATCAAAATGGAAAGAATCTGACCAGGGTGGTAACCATACG-TCAGA
* * * ** *
2080826 CTTGAAATGAGAAAAATTTCG-CCAGGGTGGTAACCATATGTCAAATCAAAATAGAAAGAATCTG
65 CCTGAAATGAGAAGAGTTT-GACCAGGGTGGTAACCATACATCAAATCAAAATAGAAAGAATCTA
*
2080890 ACGAGGGTGGTAACCATACGTCAGACCT-AAACTGAGAAGAGTTTTGACCAG
129 ACCAGGGTGGTAACCATACGTCAGACCTGAAA-TGAGAAGAG-TTTGACCAG
*
2080941 GGTGGTAACCATACGTCAAATCAAAATGGAAAGAATCTGACCAGGGTGGTAACCATACGTCAAAC
1 GGTGGTAACCATACGTCAAATCAAAATGGAAAGAATCTGACCAGGGTGGTAACCATACGTCAGAC
* *
2081006 CTGAAATAAGAAGAGTCTGACCAGGGTGGTAACCATACATCAAATCAAAATAGAAAGAATCTAAC
66 CTGAAATGAGAAGAGTTTGACCAGGGTGGTAACCATACATCAAATCAAAATAGAAAGAATCTAAC
*
2081071 CAGGGTGGTAACTATACGTCAGACCTGAAATGAGAAGAGTTTGACCAG
131 CAGGGTGGTAACCATACGTCAGACCTGAAATGAGAAGAGTTTGACCAG
* * * * *
2081119 GGTGGTAACCATACGTTAAATTAAAATAGAAAGAATCTAACCATGGTGGTAACCATACGTCAGAC
1 GGTGGTAACCATACGTCAAATCAAAATGGAAAGAATCTGACCAGGGTGGTAACCATACGTCAGAC
* * *
2081184 CTAAAATGAGAAGAGTTTGACCAAGGCGGTAACCATA
66 CTGAAATGAGAAGAGTTTGACCAGGGTGGTAACCATA
2081221 TGTCAAACAG
Statistics
Matches: 252, Mismatches: 25, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
178 103 0.41
179 146 0.58
180 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (178 bp):
GGTGGTAACCATACGTCAAATCAAAATGGAAAGAATCTGACCAGGGTGGTAACCATACGTCAGAC
CTGAAATGAGAAGAGTTTGACCAGGGTGGTAACCATACATCAAATCAAAATAGAAAGAATCTAAC
CAGGGTGGTAACCATACGTCAGACCTGAAATGAGAAGAGTTTGACCAG
Found at i:2082300 original size:20 final size:20
Alignment explanation
Indices: 2082275--2082326 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
2082265 GTATCGATAC
**
2082275 AATGTATCGATACATGACTA
1 AATGTATCGATACATGAAAA
*
2082295 AATGTATCGATACTTGAAAA
1 AATGTATCGATACATGAAAA
2082315 AATGTATCGATA
1 AATGTATCGATA
2082327 GAAGTCATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATGAAAA
Found at i:2082398 original size:13 final size:13
Alignment explanation
Indices: 2082380--2082405 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2082370 ACACACAATA
2082380 TGTATCGATACAT
1 TGTATCGATACAT
2082393 TGTATCGATACAT
1 TGTATCGATACAT
2082406 CACAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2082416 original size:33 final size:32
Alignment explanation
Indices: 2082360--2082427 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 32
2082350 GTAGCTAAAT
*
2082360 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
2082392 TTGTATCGATACATCACAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
2082425 TTG
1 TTG
2082428 GCTTGTAACG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 13 0.38
33 21 0.62
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:2084826 original size:23 final size:22
Alignment explanation
Indices: 2084796--2084865 Score: 113
Period size: 22 Copynumber: 3.1 Consensus size: 22
2084786 CAAATTATAA
* *
2084796 CTCCCCTTTAATAAAAAATTTT
1 CTCCCCCTTAATAAAAATTTTT
2084818 CTCCCCCTTAATAAAAATTTTTT
1 CTCCCCCTTAATAAAAA-TTTTT
2084841 CTCCCCCTTAATAAAAATTTTT
1 CTCCCCCTTAATAAAAATTTTT
2084863 CTC
1 CTC
2084866 TTAAAAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
22 24 0.53
23 21 0.47
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.41
Consensus pattern (22 bp):
CTCCCCCTTAATAAAAATTTTT
Found at i:2086742 original size:19 final size:20
Alignment explanation
Indices: 2086698--2086751 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
2086688 CTGCCAGTTT
**
2086698 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
2086718 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
2086737 CATGTATCGATACAA
1 CATGTATCGATACAA
2086752 AGCATAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:2086763 original size:20 final size:19
Alignment explanation
Indices: 2086698--2086766 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 19
2086688 CTGCCAGTTT
* **
2086698 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-AGAA
*
2086718 CATGTATCGATACAATGAA
1 CATGTATCGATACAAAGAA
2086737 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAAAG-A-A
2086758 -ATGTATCGA
1 CATGTATCGA
2086767 GACATCTGGG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
19 18 0.41
20 25 0.57
21 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAAAGAA
Found at i:2087434 original size:37 final size:38
Alignment explanation
Indices: 2087326--2087431 Score: 139
Period size: 38 Copynumber: 2.8 Consensus size: 38
2087316 AGGCTCTCAT
*
2087326 TAAAAAA--ATTTTCCAT-AAAAAATTTCTCCCCCTTGA
1 TAAAAAATTATTTT-CATAAAAAAATTTCTCCCCTTTGA
2087362 TAAAAAATTATTTTCATAAAAAAATTTCTCCCCTTTGA
1 TAAAAAATTATTTTCATAAAAAAATTTCTCCCCTTTGA
* *
2087400 TAAAAATTTATTTTCA-AAACAATATTTCTCCC
1 TAAAAAATTATTTTCATAAA-AAAATTTCTCCC
2087432 TTTTTCTGTT
Statistics
Matches: 63, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
36 7 0.11
37 6 0.10
38 50 0.79
ACGTcount: A:0.42, C:0.19, G:0.02, T:0.38
Consensus pattern (38 bp):
TAAAAAATTATTTTCATAAAAAAATTTCTCCCCTTTGA
Found at i:2092960 original size:13 final size:13
Alignment explanation
Indices: 2092942--2092967 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2092932 CAATTTTTTG
2092942 TGTATCGATACAT
1 TGTATCGATACAT
2092955 TGTATCGATACAT
1 TGTATCGATACAT
2092968 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2096487 original size:20 final size:20
Alignment explanation
Indices: 2096462--2096518 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
2096452 GTTTAAAGCA
*
2096462 ATGTATCGATACAATT-TATC
1 ATGTATCGATACAATTGT-CC
*
2096482 ATGTATCGATACAGTTGTCC
1 ATGTATCGATACAATTGTCC
2096502 ATGTATCGATAC-ATTGT
1 ATGTATCGATACAATTGT
2096519 ATCGATACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.12
20 28 0.85
21 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACAATTGTCC
Found at i:2096521 original size:13 final size:13
Alignment explanation
Indices: 2096502--2096532 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2096492 ACAGTTGTCC
2096502 ATGTATCGATACA
1 ATGTATCGATACA
*
2096515 TTGTATCGATACA
1 ATGTATCGATACA
2096528 ATGTA
1 ATGTA
2096533 CCATTTATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2096525 original size:33 final size:33
Alignment explanation
Indices: 2096483--2096547 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
2096473 CAATTTATCA
*
2096483 TGTATCGATACAGTTGT-CCATGTATCGATACAT
1 TGTATCGATACA-ATGTACCATGTATCGATACAT
*
2096516 TGTATCGATACAATGTACCATTTATCGATACA
1 TGTATCGATACAATGTACCATGTATCGATACA
2096548 AACAGTGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 3 0.10
33 26 0.90
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGTATCGATACAT
Found at i:2096616 original size:13 final size:13
Alignment explanation
Indices: 2096598--2096626 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
2096588 ACAGTTGTCC
2096598 ATGTATCGATACA
1 ATGTATCGATACA
2096611 ATGTATCGATACA
1 ATGTATCGATACA
2096624 ATG
1 ATG
2096627 AACATGTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2099058 original size:14 final size:14
Alignment explanation
Indices: 2099039--2099065 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2099029 TATATTTTGC
2099039 TTGATTGATGAAGT
1 TTGATTGATGAAGT
2099053 TTGATTGATGAAG
1 TTGATTGATGAAG
2099066 ATCTCGTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.41
Consensus pattern (14 bp):
TTGATTGATGAAGT
Found at i:2101971 original size:19 final size:19
Alignment explanation
Indices: 2101947--2102028 Score: 113
Period size: 19 Copynumber: 4.6 Consensus size: 19
2101937 ATTGATACAA
2101947 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
2101966 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
2101985 TGTATCGATAC--AA----
1 TGTATCGATACATAAGTGT
*
2101998 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTGT
2102017 TGTATCGATACA
1 TGTATCGATACA
2102029 ATGTATCGCT
Statistics
Matches: 57, Mismatches: 0, Indels: 12
0.83 0.00 0.17
Matches are distributed among these distances:
13 11 0.19
15 2 0.04
17 2 0.04
19 42 0.74
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:2102002 original size:32 final size:32
Alignment explanation
Indices: 2101966--2102036 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
2101956 ACATAAGTGT
2101966 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
2101998 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
2102030 TGTATCG
1 TGTATCG
2102037 CTATGAAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:2102003 original size:13 final size:13
Alignment explanation
Indices: 2101985--2102009 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2101975 ACATAAGTGT
2101985 TGTATCGATACAA
1 TGTATCGATACAA
2101998 TGTATCGATACA
1 TGTATCGATACA
2102010 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2110915 original size:13 final size:13
Alignment explanation
Indices: 2110897--2110921 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2110887 CAAAGATCAG
2110897 TGTATCGATACAA
1 TGTATCGATACAA
2110910 TGTATCGATACA
1 TGTATCGATACA
2110922 TTTAAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2110991 original size:19 final size:18
Alignment explanation
Indices: 2110964--2111061 Score: 81
Period size: 19 Copynumber: 5.8 Consensus size: 18
2110954 TAGCTTACAT
*
2110964 TGTAGCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
2110983 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
2110996 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
2111015 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
2111028 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
2111048 TGTATCGATACAAA
1 TGTATCGATACAAA
2111062 TCGTTGAAAT
Statistics
Matches: 65, Mismatches: 1, Indels: 26
0.71 0.01 0.28
Matches are distributed among these distances:
13 22 0.34
14 2 0.03
16 4 0.06
18 1 0.02
19 23 0.35
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:2110997 original size:32 final size:32
Alignment explanation
Indices: 2110959--2111059 Score: 175
Period size: 32 Copynumber: 3.1 Consensus size: 32
2110949 GGCAGTAGCT
* *
2110959 TACATTGTAGCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
2110991 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
2111023 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACAC-TTATGTATCGA
2111056 TACA
1 TACA
2111060 AATCGTTGAA
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 51 0.77
33 15 0.23
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.34
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:2111001 original size:13 final size:13
Alignment explanation
Indices: 2110983--2111039 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
2110973 ACAAAACTTA
2110983 TGTATCGATACAT
1 TGTATCGATACAT
2110996 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
2111014 ATGTATCGATACAT
1 -TGTATCGATACAT
2111028 TGTATCGATACA
1 TGTATCGATACA
2111040 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2111902 original size:67 final size:68
Alignment explanation
Indices: 2111780--2111906 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
2111770 ATTGGGTTTT
* * *
2111780 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
2111845 AGA
66 AGA
* * * *
2111848 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
2111907 GAAAAAAGGA
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:2111940 original size:56 final size:52
Alignment explanation
Indices: 2111856--2112839 Score: 706
Period size: 43 Copynumber: 20.9 Consensus size: 52
2111846 GAAAAGTGAT
* * * * * *
2111856 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-G--A
* * * *
2111911 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
*
2111964 AAAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112007 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---A
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * * *
2112056 GAAGGTACCAATATGCTGATTCAATGCCAGTTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
2112099 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGAT-GA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112150 CAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G-
1 -AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112201 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112243 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTA-CTTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112292 -AAGGTGCTAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TGG-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112336 --AGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGAC-T-----TGG-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
2112379 --AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112427 -ATGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112469 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
*
2112519 -AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TGG-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
2112563 --AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112611 -ATGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112653 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112703 -AAGGTACCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TGG-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* * *
2112747 --AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
* *
2112795 -AAGGTGCCAATATGCTGATTCAAGGCGAGCGATATTGGACTTAAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
2112840 AGGGTTGCCA
Statistics
Matches: 781, Mismatches: 81, Indels: 140
0.78 0.08 0.14
Matches are distributed among these distances:
42 6 0.01
43 331 0.42
44 10 0.01
46 1 0.00
48 40 0.05
49 268 0.34
51 1 0.00
52 77 0.10
53 6 0.01
55 5 0.01
56 36 0.05
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGA
Found at i:2112025 original size:43 final size:43
Alignment explanation
Indices: 2111964--2112839 Score: 863
Period size: 43 Copynumber: 19.1 Consensus size: 43
2111954 TAAAGATGGA
* *
2111964 AAAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2112007 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * * *
2112050 AAAGAAGAAGGTACCAATATGCTGATTCAATGCCAGTTATATTGGACTT
1 -----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* *
2112099 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
* * *
2112148 GACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2112194 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2112243 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTA-CTTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
2112285 AAAGATGAAGGTGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
** *
2112334 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
** *
2112377 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2112420 AAAAATGATGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 --AAA-G--G-TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2112469 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* *
2112512 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
** *
2112561 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2112604 AAAAATGATGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 --AAA-G--G-TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
2112653 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
2112696 AAAGATGAAGGTACCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
** *
2112745 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
2112788 AAAAATGAAGGTGCCAATATGCTGATTCAAGGCGAGCGATATTGGACTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
2112837 AAA
1 AAA
2112840 AGGGTTGCCA
Statistics
Matches: 708, Mismatches: 70, Indels: 110
0.80 0.08 0.12
Matches are distributed among these distances:
42 8 0.01
43 334 0.47
44 4 0.01
45 4 0.01
46 6 0.01
47 10 0.01
48 32 0.05
49 272 0.38
51 1 0.00
52 37 0.05
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:2112103 original size:92 final size:92
Alignment explanation
Indices: 2111911--2112839 Score: 1208
Period size: 92 Copynumber: 10.0 Consensus size: 92
2111901 AGATGAGAAA
* * *
2111911 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---AGAAGGTGCCAAT
* *
2111976 ATGCTGATTCAAGGCGAGCTATATTGGACTT
62 ATGCTGATTCAAGGCCAGCGATATTGGACTT
*
2112007 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTACCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
* **
2112072 TGATTCAATGCCAGTTATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * *
2112099 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGACAAAGGCGCCAATA
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA--A-GAAGGTGCCAATA
2112164 TGCTGATTCAAGGCCAGCGATATTGGACTT
63 TGCTGATTCAAGGCCAGCGATATTGGACTT
* *
2112194 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-----A-AAGGTGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCA
*
2112253 ATGTGCTGATTCAAGGCCAGC--TACTTGGACTT
60 ATATGCTGATTCAAGGCCAGCGATA-TTGGACTT
* * * *
2112285 AAAGATGAAGGTGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGTGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCA
*
2112344 ATGTGCTGATTCAAGGCCAGCGATATTGGACTT
60 ATATGCTGATTCAAGGCCAGCGATATTGGACTT
** * *
2112377 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA-AATGATGATGCCAATATG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAA-GAAGGTGCCAATATG
*
2112441 CTGATTCAAGGCCAGCTATATTGGACTT
65 CTGATTCAAGGCCAGCGATATTGGACTT
*
2112469 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
2112534 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
** * *
2112561 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA-AATGATGATGCCAATATG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAA-GAAGGTGCCAATATG
*
2112625 CTGATTCAAGGCCAGCTATATTGGACTT
65 CTGATTCAAGGCCAGCGATATTGGACTT
* *
2112653 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTACCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
2112718 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
**
2112745 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA-AATGAAGGTGCCAATATG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAA-GAAGGTGCCAATATG
*
2112809 CTGATTCAAGGCGAGCGATATTGGACTT
65 CTGATTCAAGGCCAGCGATATTGGACTT
2112837 AAA
1 AAA
2112840 AGGGTTGCCA
Statistics
Matches: 752, Mismatches: 56, Indels: 54
0.87 0.06 0.06
Matches are distributed among these distances:
86 37 0.05
90 2 0.00
91 87 0.12
92 496 0.66
93 4 0.01
94 2 0.00
95 78 0.10
96 5 0.01
99 1 0.00
101 40 0.05
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:2112268 original size:21 final size:21
Alignment explanation
Indices: 2112201--2112268 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
2112191 CTTAAAGATG
2112201 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
* * *
2112222 AAGGCCAGCGATAT-TG--GACTTA
1 AAGG--TGCCA-ATGTGCTGA-TTC
2112244 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
2112265 AAGG
1 AAGG
2112269 CCAGCTACTT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 12 0.35
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (21 bp):
AAGGTGCCAATGTGCTGATTC
Found at i:2112559 original size:184 final size:184
Alignment explanation
Indices: 2111911--2112839 Score: 1337
Period size: 184 Copynumber: 5.0 Consensus size: 184
2111901 AGATGAGAAA
* *
2111911 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
* * **
2111976 ATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
62 ATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTAC
* * * *
2112041 ATTGGACTTAAAGAA-GAAGGTACCAATATGCTGATTCAATGCCAGTTATATTGGACTT
127 ATTGGACTTAAA-AATGAAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
2112099 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGACAAAGGCGCCAATA
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG---AAGGTGCCAATA
2112164 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCA
63 TGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGTGCCAATGTGCTGATTCAAGGCCA
* * * *
2112229 GCGATATTGGACTT--AAA-G--G-TGCCAATGTGCTGATTCAAGGCCAGCTA-CTTGGACTT
122 GCTACATTGGACTTAAAAATGAAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * * *
2112285 AAAGATGAAGGTGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGTGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
*
2112344 ATGTGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCT
60 ATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCT
*
2112409 ACATTGGACTTAAAAATGATGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
125 ACATTGGACTTAAAAATGAAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
2112469 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
2112534 TGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
66 TGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
*
2112599 GACTTAAAAATGATGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
131 GACTTAAAAATGAAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
2112653 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTACCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
2112718 TGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
66 TGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
* * *
2112783 GACTTAAAAATGAAGGTGCCAATATGCTGATTCAAGGCGAGCGATATTGGACTT
131 GACTTAAAAATGAAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
2112837 AAA
1 AAA
2112840 AGGGTTGCCA
Statistics
Matches: 679, Mismatches: 36, Indels: 56
0.88 0.05 0.07
Matches are distributed among these distances:
177 39 0.06
178 39 0.06
179 3 0.00
180 3 0.00
181 1 0.00
182 1 0.00
183 67 0.10
184 322 0.47
186 9 0.01
187 106 0.16
188 6 0.01
189 1 0.00
190 4 0.01
191 1 0.00
192 38 0.06
193 39 0.06
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (184 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
GACTTAAAAATGAAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:2112880 original size:32 final size:32
Alignment explanation
Indices: 2112835--2112941 Score: 155
Period size: 32 Copynumber: 3.4 Consensus size: 32
2112825 GATATTGGAC
2112835 TTAA-AAGGGTTGCCACCGACTTGTGTGGGCT
1 TTAAGAAGGGTTGCCACCGACTTGTGTGGGCT
* *
2112866 TTAAGAAGGGTTGCCATCGACTTGTCTGGGCT
1 TTAAGAAGGGTTGCCACCGACTTGTGTGGGCT
* *
2112898 TT-AGAGGGGATTGCCACCAACTTGTGTGGGCT
1 TTAAGAAGGG-TTGCCACCGACTTGTGTGGGCT
2112930 TTAAGAAGGGTT
1 TTAAGAAGGGTT
2112942 AAAGATGCCA
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
31 10 0.15
32 50 0.76
33 6 0.09
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.30
Consensus pattern (32 bp):
TTAAGAAGGGTTGCCACCGACTTGTGTGGGCT
Found at i:2113204 original size:99 final size:99
Alignment explanation
Indices: 2112942--2113279 Score: 452
Period size: 97 Copynumber: 3.4 Consensus size: 99
2112932 AAGAAGGGTT
* * ** *
2112942 AAAGATGCCACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCATGAAGTTGTGGACTTTAAACGG
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGG
2113007 GAAAAAGGAGTGCCACAGAGTTGTGGGCTTTGAAAA
66 GAAAAA-GAGTGCCACAGAGTTGTGGGCTTT-AAAA
* * * * * *
2113043 GAAGGTGTCATGGAGTCGTGGACTTAAAAGGAACAA---GCCACAGGGTTGTGGACTTTAAAAGG
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGG
* *
2113105 GAAAAAGAGTGCCACGGAATTGTGGGCTTTAAAA
66 GAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAA
*
2113139 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGG
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGG
*
2113204 GAAAAAGAGTGCCACAGAGTTGTGAGCTTT--AA
66 GAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAA
* * *
2113236 AAGGGTGCCACGAAGTTGTGGACTTAGAAGGAAAAAGAGTGCCA
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAACAAG-GTGCCA
2113280 TAGAGTTGTG
Statistics
Matches: 208, Mismatches: 25, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
96 36 0.17
97 57 0.27
98 33 0.16
99 52 0.25
101 30 0.14
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (99 bp):
AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGG
GAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAA
Found at i:2113285 original size:62 final size:62
Alignment explanation
Indices: 2113175--2113360 Score: 268
Period size: 61 Copynumber: 3.0 Consensus size: 62
2113165 AAAGGAACAA
* * *
2113175 GGTGCCACGGGGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGAGCTTTAAAAG
1 GGTGCCACGGAGTTGTGGAC-TTAGAA-GGAAAAAGAGTGCCATAGAGTTGTGAGCTTTAAAAG
* * *
2113239 GGTGCCACGAAGTTGTGGACTTAGAAGGAAAAAGAGTGCCATAGAGTTGTGGGC-TTAAACG
1 GGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCATAGAGTTGTGAGCTTTAAAAG
*
2113300 GGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCATGGAGTTGT-AGGCTTTAAAA
1 GGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCATAGAGTTGTGA-GCTTTAAAA
2113361 AGGAAAAAGA
Statistics
Matches: 110, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
61 56 0.51
62 31 0.28
63 5 0.05
64 18 0.16
ACGTcount: A:0.31, C:0.12, G:0.34, T:0.22
Consensus pattern (62 bp):
GGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCATAGAGTTGTGAGCTTTAAAAG
Found at i:2113291 original size:161 final size:164
Alignment explanation
Indices: 2113087--2113461 Score: 473
Period size: 161 Copynumber: 2.3 Consensus size: 164
2113077 AAGCCACAGG
* *
2113087 GTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAATTGTGGGCTTTAAAAAAAGGTGCCACGG
1 GTTGTGGACTTTAAAA-GGAAAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAAAAGGTGCCACGG
* * *
2113152 AGTTGTGGACTTAAAAGGAACAAG-GTGCCACGGGGTTGT-GGACTTTAAAAGGGAAAAAGAGTG
65 AGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTAGG-CTTTAAAAAGGAAAAAGA-TG
2113215 CCACAGAGTTGTGAG-CTTT-AAAAG-GGTGCCACGAA
128 CCACAGAGTTGTG-GCCTTTGAAAAGAGGTGCCACGAA
* * **
2113250 GTTGTGGAC-TTAGAAGGAAAAAGAGTGCCATAGAGTTGTGGGC-TT--AAACGGGTGCCACGGA
1 GTTGTGGACTTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAAAAGGTGCCACGGA
* *
2113311 GTTGTGGACTTAGAAGGAAAAAGAGTGCCATGGAGTTGTAGGCTTTAAAAAGGAAAAAGATGCCA
66 GTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTAGGCTTTAAAAAGGAAAAAGATGCCA
*
2113376 CAGAGTTGTGGCCTTTGAAAAGAAGGTGCCACGGA
131 CAGAGTTGTGGCCTTTGAAAAG-AGGTGCCACGAA
* * * * * *
2113411 GTCGTGGGCTTTAAAAAGAAGAAG-GTGCCATGGAGTCGTGGACTTTAAAAA
1 GTTGTGGACTTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAA
2113462 GGTATTTGAA
Statistics
Matches: 182, Mismatches: 20, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
157 1 0.01
158 54 0.30
159 35 0.19
160 4 0.02
161 58 0.32
162 18 0.10
163 9 0.05
164 3 0.02
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (164 bp):
GTTGTGGACTTTAAAAGGAAAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAAAAGGTGCCACGGA
GTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTAGGCTTTAAAAAGGAAAAAGATGCCA
CAGAGTTGTGGCCTTTGAAAAGAGGTGCCACGAA
Found at i:2113328 original size:158 final size:164
Alignment explanation
Indices: 2113087--2113426 Score: 446
Period size: 158 Copynumber: 2.1 Consensus size: 164
2113077 AAGCCACAGG
*
2113087 GTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAATTGTGGGCTTTAAAAAAAGGTGCCACGG
1 GTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAATTGTGGGCTTT-AAAAAAGGTGCCACGG
* * *
2113152 AGTTGTGGACTTAAAAGGAACAAG-GTGCCACGGGGTTGT-GGACTTTAAAAGGGAAAAAGAGTG
65 AGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTAGG-CTTTAAAAAGGAAAAAGA-TG
2113215 CCACAGAGTTGTGAG-CTTT-AAAAG-GGTGCCACGAA
128 CCACAGAGTTGTG-GCCTTTGAAAAGAGGTGCCACGAA
* * * **
2113250 GTTGTGGAC-TTAGAA-GGAAAAAGAGTGCCATAGAGTTGTGGGC-TT-AAACGGGTGCCACGGA
1 GTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAATTGTGGGCTTTAAAAAAGGTGCCACGGA
* *
2113311 GTTGTGGACTTAGAAGGAAAAAGAGTGCCATGGAGTTGTAGGCTTTAAAAAGGAAAAAGATGCCA
66 GTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTAGGCTTTAAAAAGGAAAAAGATGCCA
*
2113376 CAGAGTTGTGGCCTTTGAAAAGAAGGTGCCACGGA
131 CAGAGTTGTGGCCTTTGAAAAG-AGGTGCCACGAA
* *
2113411 GTCGTGGGCTTTAAAA
1 GTTGTGGACTTTAAAA
2113427 AGAAGAAGGT
Statistics
Matches: 155, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
157 1 0.01
158 54 0.35
159 35 0.23
160 4 0.03
161 42 0.27
162 10 0.06
163 9 0.06
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (164 bp):
GTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAATTGTGGGCTTTAAAAAAGGTGCCACGGA
GTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTAGGCTTTAAAAAGGAAAAAGATGCCA
CAGAGTTGTGGCCTTTGAAAAGAGGTGCCACGAA
Found at i:2113421 original size:66 final size:68
Alignment explanation
Indices: 2113302--2113455 Score: 170
Period size: 66 Copynumber: 2.3 Consensus size: 68
2113292 CTTAAACGGG
* * *
2113302 TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCATGGAGTTGTAGGCTTTAAAAAGGAAA
1 TGCCACAGAGTTGTGGACTTAGAA-GAAAAAGAGTGCCACGGAGTCGTAGGCTTTAAAAAGGAAA
2113367 AAGA
65 AAGA
* * * * *
2113371 TGCCACAGAGTTGTGGCCTTTGAA-AAGAAG-GTGCCACGGAGTCGTGGGCTTTAAAAA-GAAGA
1 TGCCACAGAGTTGTGGACTTAGAAGAAAAAGAGTGCCACGGAGTCGTAGGCTTTAAAAAGGAAAA
*
2113433 AGG
66 AGA
** *
2113436 TGCCATGGAGTCGTGGACTT
1 TGCCACAGAGTTGTGGACTT
2113456 TAAAAAGGTA
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
65 22 0.31
66 24 0.33
67 5 0.07
69 21 0.29
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.21
Consensus pattern (68 bp):
TGCCACAGAGTTGTGGACTTAGAAGAAAAAGAGTGCCACGGAGTCGTAGGCTTTAAAAAGGAAAA
AGA
Found at i:2113438 original size:34 final size:34
Alignment explanation
Indices: 2113300--2113462 Score: 156
Period size: 34 Copynumber: 4.9 Consensus size: 34
2113290 GGCTTAAACG
* *
2113300 GGTGCCACGGAGTTGTGGAC-TTAGAAGGAAAAA
1 GGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAA
*
2113333 GAGTGCCATGGAGTTGTAGG-CTTTAAAAAGGAAAAA
1 G-GTGCCACGGAGTTGT-GGACTTTAAAAA-GAAAAA
* * * *
2113369 GATGCCACAGAGTTGTGGCCTTTGAAAAG---AA
1 GGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAA
* * *
2113400 GGTGCCACGGAGTCGTGGGCTTTAAAAAGAAGAA
1 GGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAA
* *
2113434 GGTGCCATGGAGTCGTGGACTTTAAAAAG
1 GGTGCCACGGAGTTGTGGACTTTAAAAAG
2113463 GTATTTGAAG
Statistics
Matches: 108, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
31 26 0.24
33 1 0.01
34 47 0.44
35 27 0.25
36 7 0.06
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (34 bp):
GGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAA
Found at i:2113439 original size:100 final size:97
Alignment explanation
Indices: 2113263--2113463 Score: 246
Period size: 100 Copynumber: 2.0 Consensus size: 97
2113253 GTGGACTTAG
* * * * * *
2113263 AAGGAAAAAGAGTGCCATAGAGTTGTGGGCTTAAACGGGTGCCACGGAGTTGTGGACTTAGAAGG
1 AAGGAAAAAGAGTGCCACAGAGTTGTGGCCTTAAAAGGGTGCCACGGAGTCGTGGACTTAAAAAG
*
2113328 AAAAAGAGTGCCATGGAGTTGTAGG-CTTTAAA
66 AAAAAGAGTGCCATGGAGTCGT-GGACTTTAAA
*
2113360 AAGGAAAAAGA-TGCCACAGAGTTGTGGCCTTTGAAAAGAAGGTGCCACGGAGTCGTGGGCTTTA
1 AAGGAAAAAGAGTGCCACAGAGTTGTGGCC-TT-AAAAG--GGTGCCACGGAGTCGTGGAC-TTA
*
2113424 AAAAGAAGAAG-GTGCCATGGAGTCGTGGACTTTAAA
61 AAAAGAAAAAGAGTGCCATGGAGTCGTGGACTTTAAA
2113460 AAGG
1 AAGG
2113464 TATTTGAAGA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
96 16 0.18
97 13 0.15
98 4 0.04
99 2 0.02
100 43 0.48
101 11 0.12
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.20
Consensus pattern (97 bp):
AAGGAAAAAGAGTGCCACAGAGTTGTGGCCTTAAAAGGGTGCCACGGAGTCGTGGACTTAAAAAG
AAAAAGAGTGCCATGGAGTCGTGGACTTTAAA
Found at i:2114454 original size:17 final size:16
Alignment explanation
Indices: 2114415--2114466 Score: 65
Period size: 15 Copynumber: 3.4 Consensus size: 16
2114405 CCTCTCTTCT
2114415 TTTTTTG-TTTGTTTC
1 TTTTTTGTTTTGTTTC
* *
2114430 TTCTTT-TTTT-TTCC
1 TTTTTTGTTTTGTTTC
2114444 TTTTTTGTTTTGTTTC
1 TTTTTTGTTTTGTTTC
2114460 TTTTTTG
1 TTTTTTG
2114467 GAAAAGAACA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 8 0.27
15 12 0.40
16 10 0.33
ACGTcount: A:0.00, C:0.10, G:0.10, T:0.81
Consensus pattern (16 bp):
TTTTTTGTTTTGTTTC
Found at i:2114730 original size:14 final size:14
Alignment explanation
Indices: 2114711--2114738 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2114701 ACCTTTTTTC
2114711 TGTTTTTTTTGTTT
1 TGTTTTTTTTGTTT
2114725 TGTTTTTTTTGTTT
1 TGTTTTTTTTGTTT
2114739 ACTTTTGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (14 bp):
TGTTTTTTTTGTTT
Found at i:2117692 original size:20 final size:20
Alignment explanation
Indices: 2117667--2117740 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
2117657 TCATACCCTG
2117667 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
2117687 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
2117707 ATGT-TCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
*
2117726 ATGTATCAATACATT
1 ATGTATCGATACATT
2117741 ATGTCTTTTT
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
19 13 0.31
20 29 0.69
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:2117728 original size:39 final size:39
Alignment explanation
Indices: 2117667--2117743 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
2117657 TCATACCCTG
* * *
2117667 ATGTATCGATACATTTTTCAATGTATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATGTATCAATACAT-TATGA
*
2117707 ATGT-TCGATATATTCTACAATGTATCAATACATTATG
1 ATGTATCGATACATTCTACAATGTATCAATACATTATG
2117744 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 4 0.12
39 25 0.76
40 4 0.12
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATGTATCAATACATTATGA
Found at i:2118676 original size:22 final size:22
Alignment explanation
Indices: 2118650--2118705 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
2118640 AGCCTTTGAC
2118650 CATGCATTTTTTTATTATGTTT
1 CATGCATTTTTTTATTATGTTT
2118672 CATGCATTTTTTTATTATGTTT
1 CATGCATTTTTTTATTATGTTT
2118694 CATG--TTTTTTTA
1 CATGCATTTTTTTA
2118706 ACATGTCCAG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 8 0.24
22 26 0.76
ACGTcount: A:0.18, C:0.09, G:0.09, T:0.64
Consensus pattern (22 bp):
CATGCATTTTTTTATTATGTTT
Found at i:2125183 original size:20 final size:20
Alignment explanation
Indices: 2125160--2125232 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
2125150 ACAATTGAAA
2125160 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2125180 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2125201 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
*
2125221 GTATCAATACAT
1 GTATCGATACAT
2125233 AAAAAAGATG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
20 27 0.63
21 16 0.37
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2125204 original size:21 final size:21
Alignment explanation
Indices: 2125178--2125253 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
2125168 ACATGTTGCA
2125178 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2125199 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
* *
2125219 ATGTATCAATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
2125240 ATGTATCGATACAT
1 ATGTATCGATACAT
2125254 TTCTTGGCAG
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
20 14 0.33
21 29 0.67
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2125210 original size:41 final size:41
Alignment explanation
Indices: 2125160--2125253 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
2125150 ACAATTGAAA
* *
2125160 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCAATACATAAAAAAGAT
2125201 GTATCGATACATGTTGCAATGTATCAATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCAATACATAAAAAAGAT
2125242 GTATCGATACAT
1 GTATCGATACAT
2125254 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCAATACATAAAAAAGAT
Found at i:2125310 original size:13 final size:13
Alignment explanation
Indices: 2125292--2125317 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2125282 TACAGCAAGT
2125292 ATGTATCGATACA
1 ATGTATCGATACA
2125305 ATGTATCGATACA
1 ATGTATCGATACA
2125318 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2129399 original size:15 final size:15
Alignment explanation
Indices: 2129379--2129409 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2129369 TAAAAATCTC
*
2129379 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
2129394 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
2129409 C
1 C
2129410 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:2130248 original size:20 final size:20
Alignment explanation
Indices: 2130169--2130248 Score: 88
Period size: 20 Copynumber: 3.8 Consensus size: 20
2130159 AATGTCCAAA
*
2130169 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
*
2130189 GTGTATCGATACATTTGGAAATTCT
1 ATGTATCGATACATTT-----TTCT
2130214 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
2130234 TTGTATCGATACATT
1 ATGTATCGATACATT
2130249 GTATCGATAC
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
20 32 0.63
25 19 0.37
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:2130252 original size:13 final size:13
Alignment explanation
Indices: 2130234--2130272 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
2130224 ACATTTTTCT
2130234 TTGTATCGATACA
1 TTGTATCGATACA
2130247 TTGTATCGATACA
1 TTGTATCGATACA
* *
2130260 CTGTATCAATACA
1 TTGTATCGATACA
2130273 GGGTGTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2132749 original size:20 final size:20
Alignment explanation
Indices: 2132726--2132798 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2132716 ACAATTGAAA
2132726 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2132746 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2132767 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2132787 GTATCGATACAT
1 GTATCGATACAT
2132799 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2132770 original size:21 final size:21
Alignment explanation
Indices: 2132744--2132819 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
2132734 ACATGTTGCA
2132744 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2132765 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2132785 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
2132806 ATGTATCGATACAT
1 ATGTATCGATACAT
2132820 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2132777 original size:41 final size:41
Alignment explanation
Indices: 2132726--2132819 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
2132716 ACAATTGAAA
*
2132726 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2132767 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2132808 GTATCGATACAT
1 GTATCGATACAT
2132820 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2132876 original size:13 final size:13
Alignment explanation
Indices: 2132858--2132883 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2132848 TACAGCAAGT
2132858 ATGTATCGATACA
1 ATGTATCGATACA
2132871 ATGTATCGATACA
1 ATGTATCGATACA
2132884 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2140541 original size:12 final size:11
Alignment explanation
Indices: 2140524--2140584 Score: 61
Period size: 11 Copynumber: 5.2 Consensus size: 11
2140514 TTTTACACCC
2140524 AAAAAACAACAA
1 AAAAAACAA-AA
2140536 AAAAAATCAAAAA
1 AAAAAA-C-AAAA
2140549 AAAAAACAAAA
1 AAAAAACAAAA
2140560 AAAAAA-AAGAA
1 AAAAAACAA-AA
*
2140571 AAAATAGCAAAA
1 AAAA-AACAAAA
2140583 AA
1 AA
2140585 TAGAAGGGTC
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
10 2 0.05
11 16 0.37
12 12 0.28
13 11 0.26
14 2 0.05
ACGTcount: A:0.85, C:0.08, G:0.03, T:0.03
Consensus pattern (11 bp):
AAAAAACAAAA
Found at i:2140550 original size:13 final size:12
Alignment explanation
Indices: 2140524--2140584 Score: 70
Period size: 12 Copynumber: 5.1 Consensus size: 12
2140514 TTTTACACCC
2140524 AAAAAACAACAAA
1 AAAAAACAA-AAA
*
2140537 AAAAATCAAAAA
1 AAAAAACAAAAA
2140549 AAAAAACAAAAA
1 AAAAAACAAAAA
*
2140561 AAAAAA-AGAAA
1 AAAAAACAAAAA
* *
2140572 AAATAGCAAAAA
1 AAAAAACAAAAA
2140584 A
1 A
2140585 TAGAAGGGTC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
11 8 0.20
12 25 0.61
13 8 0.20
ACGTcount: A:0.85, C:0.08, G:0.03, T:0.03
Consensus pattern (12 bp):
AAAAAACAAAAA
Found at i:2140572 original size:22 final size:23
Alignment explanation
Indices: 2140524--2140584 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
2140514 TTTTACACCC
*
2140524 AAAAAACAACAAAAAAAATCAAA
1 AAAAAACAACAAAAAAAATAAAA
2140547 AAAAAA-AACAAAAAAAA-AAAA
1 AAAAAACAACAAAAAAAATAAAA
* *
2140568 GAAAAAATAGCAAAAAA
1 -AAAAAACAACAAAAAA
2140585 TAGAAGGGTC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 3 0.09
22 17 0.50
23 14 0.41
ACGTcount: A:0.85, C:0.08, G:0.03, T:0.03
Consensus pattern (23 bp):
AAAAAACAACAAAAAAAATAAAA
Found at i:2140572 original size:25 final size:25
Alignment explanation
Indices: 2140524--2140574 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
2140514 TTTTACACCC
* *
2140524 AAAAAACAACAAAAAAAATCAAAAA
1 AAAAAACAAAAAAAAAAAACAAAAA
*
2140549 AAAAAACAAAAAAAAAAAAGAAAAA
1 AAAAAACAAAAAAAAAAAACAAAAA
2140574 A
1 A
2140575 TAGCAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.88, C:0.08, G:0.02, T:0.02
Consensus pattern (25 bp):
AAAAAACAAAAAAAAAAAACAAAAA
Found at i:2141846 original size:29 final size:29
Alignment explanation
Indices: 2141804--2142548 Score: 937
Period size: 28 Copynumber: 25.9 Consensus size: 29
2141794 AATGTTCATC
2141804 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
2141833 CCTTTCAAAGCCCACAAATCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
2141862 CTTTTCAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
2141890 CCTTTCAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* * *
2141918 CCTTTCAAAGCCCACAAATCAGTGGTATT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
2141947 CTTTTCAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
2141975 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
2142004 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
2142033 CTTTTCAAAGCCCACAAATCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* * *
2142062 CTTTTCAAAGCCCATAAGTTAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
2142090 CCATTCAAAGCCCACAAGTTAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
2142119 CCTTTCAAAGCCCACAAGTCAGTGGCATT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* * *
2142148 CTTTTCAAAGCCCACAAATCAGTGACACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
2142177 CTTTTCAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
2142205 CCTTTCAAAGCCCACAAGTTAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
2142233 CCTTTCAGAGCCCATAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
2142261 CTTTTCGAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* * * *
2142289 CATTGCGAAGCCCACAATTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
2142318 -CTTTTAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
2142345 CTTTTTAAAGCCCACACAAGTCAGTGGCACT
1 CCTTTCAAAG-CC-CACAAGTCAGTGGCACT
* * *
2142376 CCTTTTAAAGCTCACGTAAGTCAGTGGTAC-
1 CCTTTCAAAGCCCAC--AAGTCAGTGGCACT
*
2142406 CTTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
2142435 -CTTTTAAAGCCCACAAGTCAGTGGTA-T
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
2142462 CCTTTCAAAGCCCACGAA-TTAGTGGCA-T
1 CCTTTCAAAGCCCAC-AAGTCAGTGGCACT
*
2142490 TCTTTCAAAGCCCACGCAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCA--CAAGTCAGTGGCACT
* *
2142520 CCTTTTAAAGCCCATGCAAGTCAATGGCA
1 CCTTTCAAAGCCCA--CAAGTCAGTGGCA
2142549 ACCCTTTTCA
Statistics
Matches: 633, Mismatches: 66, Indels: 33
0.86 0.09 0.05
Matches are distributed among these distances:
27 1 0.00
28 303 0.48
29 245 0.39
30 63 0.10
31 21 0.03
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (29 bp):
CCTTTCAAAGCCCACAAGTCAGTGGCACT
Found at i:2142097 original size:86 final size:85
Alignment explanation
Indices: 2141806--2142560 Score: 939
Period size: 86 Copynumber: 8.8 Consensus size: 85
2141796 TGTTCATCCC
*
2141806 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAATCAGTGGCACTCTTTTCAAA
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAA
*
2141871 GCCCACAAGTCAGTGGCACCC
65 GCCCACAAGTCAGTGGCACCT
* * *
2141892 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAATCAGTGGTATTCTTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAG
*
2141957 CCCACAAGTCAGTGGCACCC
66 CCCACAAGTCAGTGGCACCT
2141977 TTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAA
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAA
*
2142042 GCCCACAAATCAGTGGCACTCT
65 GCCCACAAGTCAGTGGCAC-CT
* * * * *
2142064 TTTCAAAGCCCATAAGTTAGTGGCACCCATTCAAAGCCCACAAGTTAGTGGCACTCCTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAG
*
2142129 CCCACAAGTCAGTGGCATTCT
66 CCCACAAGTCAGTGGCA-CCT
* * * *
2142150 TTTCAAAGCCCACAAATCAGTGACACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAA
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAA
* *
2142214 GCCCACAAGTTAGTGGCACCC
65 GCCCACAAGTCAGTGGCACCT
* * * * * * *
2142235 TTTCAGAGCCCATAAGTCAGTGGCACCTTTTCGAAGCCCACAAGTCAGTGGCAC-CATTGCGAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAG
*
2142299 CCCACAATTCAGTGGCACTCT
66 CCCACAAGTCAGTGGCAC-CT
* *
2142320 TTT-AAAGCCCACAAGTCAGTGGCACCTTTTTAAAGCCCACACAAGTCAGTGGCACTCCTTTT-A
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG-CC-CACAAGTCAGTGGCACT-CTTTTCA
* *
2142383 AAGCTCACGTAAGTCAGTGGTACCT
63 AAGCCCAC--AAGTCAGTGGCACCT
* * * *
2142408 TTTCAAAGCCCACAAGTCAGTGGCACTCTTTTAAAGCCCACAAGTCAGTGGTA-TCCTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAG
* *
2142472 CCCACGAA-TTAGTGGCA-TT
66 CCCAC-AAGTCAGTGGCACCT
* * *
2142491 CTTTCAAAGCCCACGCAAGTCAGTGGCACCCTTTTAAAGCCCATGCAAGTCAATGGCAACCCTTT
1 -TTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCA--CAAGTCAGTGGC-ACTCTTT
2142556 TCAAA
60 TCAAA
2142561 TCACCACTGT
Statistics
Matches: 590, Mismatches: 59, Indels: 36
0.86 0.09 0.05
Matches are distributed among these distances:
83 1 0.00
84 97 0.16
85 118 0.20
86 233 0.39
87 71 0.12
88 20 0.03
89 42 0.07
90 8 0.01
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (85 bp):
TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAG
CCCACAAGTCAGTGGCACCT
Found at i:2143099 original size:20 final size:20
Alignment explanation
Indices: 2143074--2143148 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
2143064 TCATACCCTG
2143074 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
2143094 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
2143114 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
2143134 ATGTATCGATACATT
1 ATGTATCGATACATT
2143149 ATGTCTTTTT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:2143136 original size:40 final size:39
Alignment explanation
Indices: 2143074--2143151 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
2143064 TCATACCCTG
* *
2143074 ATGTATCGATACATTTTTCAATGTATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATGTATCGATACAT-TATGA
*
2143114 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATGTATCGATACATTATG
2143152 TCTTTTTACC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATGTATCGATACATTATGA
Found at i:2144098 original size:23 final size:23
Alignment explanation
Indices: 2144059--2144116 Score: 95
Period size: 22 Copynumber: 2.7 Consensus size: 23
2144049 AGCCTTTGAC
2144059 CATGCATTTTTTT-ATTATGTTT
1 CATGCATTTTTTTAATTATGTTT
2144081 CATGCATTTTTTTAATTATGTTT
1 CATGCATTTTTTTAATTATGTTT
2144104 CATG--TTTTTTTAA
1 CATGCATTTTTTTAA
2144117 CATGTCCAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
21 9 0.26
22 13 0.37
23 13 0.37
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.62
Consensus pattern (23 bp):
CATGCATTTTTTTAATTATGTTT
Found at i:2150574 original size:19 final size:18
Alignment explanation
Indices: 2150550--2150647 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
2150540 TAGCTTACAT
2150550 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
2150569 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
2150582 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
2150601 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
2150614 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
2150634 TGTATCGATACAAA
1 TGTATCGATACAAA
2150648 TCGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:2150586 original size:32 final size:32
Alignment explanation
Indices: 2150545--2150645 Score: 184
Period size: 32 Copynumber: 3.1 Consensus size: 32
2150535 GGTAGTAGCT
*
2150545 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
2150577 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
2150609 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACAC-TTATGTATCGA
2150642 TACA
1 TACA
2150646 AATCGTTGAA
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
32 52 0.78
33 15 0.22
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.35
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:2150587 original size:13 final size:13
Alignment explanation
Indices: 2150569--2150625 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
2150559 ACAAAACTTA
2150569 TGTATCGATACAT
1 TGTATCGATACAT
2150582 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
2150600 ATGTATCGATACAT
1 -TGTATCGATACAT
2150614 TGTATCGATACA
1 TGTATCGATACA
2150626 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2152282 original size:19 final size:19
Alignment explanation
Indices: 2152259--2152333 Score: 89
Period size: 18 Copynumber: 3.8 Consensus size: 19
2152249 CCAAAAATGC
2152259 AAACACAAAAAAAAAACAA
1 AAACACAAAAAAAAAACAA
*
2152278 CAACAC-AAAAAAAAACAA
1 AAACACAAAAAAAAAACAA
*
2152296 AAAAACAAAAACAAAAACAAA
1 AAACACAAAAA-AAAAAC-AA
2152317 AAACTACACAAAAAAAA
1 AAAC-ACA-AAAAAAAA
2152334 GGAAGAGAGC
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
18 16 0.34
19 9 0.19
20 6 0.13
21 5 0.11
22 7 0.15
23 4 0.09
ACGTcount: A:0.81, C:0.17, G:0.00, T:0.01
Consensus pattern (19 bp):
AAACACAAAAAAAAAACAA
Found at i:2152308 original size:26 final size:27
Alignment explanation
Indices: 2152268--2152320 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
2152258 CAAACACAAA
* *
2152268 AAAAAAACAACAACACAAA-AAAAAAC
1 AAAAAAACAAAAACAAAAACAAAAAAC
2152294 AAAAAAACAAAAACAAAAACAAAAAAC
1 AAAAAAACAAAAACAAAAACAAAAAAC
2152321 TACACAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (27 bp):
AAAAAAACAAAAACAAAAACAAAAAAC
Found at i:2152328 original size:32 final size:29
Alignment explanation
Indices: 2152259--2152333 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 29
2152249 CCAAAAATGC
*
2152259 AAACACAAAAAAAAAACAACAACACAAAA
1 AAACACAAAAAAAAAACAACAAAACAAAA
*
2152288 AAAAACAAAAAAACAAA-AACAAAAACAAAA
1 AAACACAAAAAAA-AAACAAC-AAAACAAAA
2152318 AACTACACAAAAAAAA
1 AA--ACACAAAAAAAA
2152334 GGAAGAGAGC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
29 15 0.38
30 13 0.33
31 1 0.03
32 10 0.26
ACGTcount: A:0.81, C:0.17, G:0.00, T:0.01
Consensus pattern (29 bp):
AAACACAAAAAAAAAACAACAAAACAAAA
Found at i:2153790 original size:35 final size:36
Alignment explanation
Indices: 2153744--2153847 Score: 158
Period size: 35 Copynumber: 2.9 Consensus size: 36
2153734 TCCGTGGCAT
2153744 CCTTTTAAAGTCCACAACTCCGTGGCACTCTTTTT-
1 CCTTTTAAAGTCCACAACTCCGTGGCACTCTTTTTC
* * *
2153779 CTTTTTAAAGTCCCCAACTTCGTGGCACTCTTTTTC
1 CCTTTTAAAGTCCACAACTCCGTGGCACTCTTTTTC
*
2153815 CCTTTT-AAGTCCACAACTCCGTGGCACCCTTTT
1 CCTTTTAAAGTCCACAACTCCGTGGCACTCTTTT
2153848 AAGTCCACAA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
35 56 0.92
36 5 0.08
ACGTcount: A:0.18, C:0.33, G:0.12, T:0.38
Consensus pattern (36 bp):
CCTTTTAAAGTCCACAACTCCGTGGCACTCTTTTTC
Found at i:2153803 original size:63 final size:65
Alignment explanation
Indices: 2153653--2153847 Score: 193
Period size: 63 Copynumber: 3.0 Consensus size: 65
2153643 GGCAATCTCC
* * *
2153653 TTTTAAAGTCCACGAC-TCAGTGGCATCTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTC
1 TTTTAAAGTCCCCAACTTC-GTGGCATCTCTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTC
2153717 T
65 T
* * *
2153718 TTTCAAAG-CCCACAACTCCGTGGCATC-CTT-TT-AAAGTCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGTCCC-CAACTTCGTGGCATCTCTTCTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT
2153779 CT
64 CT
* ** * *
2153781 TTTTAAAGTCCCCAACTTCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCTT
1 TTTTAAAGTCCCCAACTTCGTGGCA-TC-TCTT--CTTCAAAGCCCACAACTCCGTGGCACCTTT
2153846 TT
62 TT
2153848 AAGTCCACAA
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
62 21 0.19
63 29 0.27
64 9 0.08
65 18 0.17
66 3 0.03
69 7 0.06
70 21 0.19
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (65 bp):
TTTTAAAGTCCCCAACTTCGTGGCATCTCTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
Found at i:2153844 original size:27 final size:27
Alignment explanation
Indices: 2153814--2153867 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
2153804 CACTCTTTTT
2153814 CCCTTTTAAGTCCACAACTCCGTGGCA
1 CCCTTTTAAGTCCACAACTCCGTGGCA
2153841 CCCTTTTAAGTCCACAACTCCGTGGCA
1 CCCTTTTAAGTCCACAACTCCGTGGCA
2153868 TCTTTCTCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.37, G:0.15, T:0.26
Consensus pattern (27 bp):
CCCTTTTAAGTCCACAACTCCGTGGCA
Found at i:2153902 original size:98 final size:93
Alignment explanation
Indices: 2153624--2153908 Score: 310
Period size: 98 Copynumber: 2.9 Consensus size: 93
2153614 AAATACCTTC
* * * *
2153624 TTAAAGTCCACGACTCAGTGGCAATCTCCTTTTAAAGTCCACGACTCAGTGGCATCTTTTC--TT
1 TTAAAGTCCACAACTCCGTGGC-A-C-CCTTTTAAAGTCCACAACTCCGTGGCATCTTTTCTTTT
2153687 CAAAGCCCACAACTCCGTGGCACCTTTTTCTT
63 CAAAGCCCACAACT-CGTGGCACCTTTTTCTT
* *
2153719 TTCAAAGCCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCCGTGGCACTCTTTTTCTTTT
1 TT-AAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCA-TC-TTTTCTTTT
*
2153784 TAAAGTCCC-CAACTTCGTGGCACTCTTTTTCCCTT
63 CAAAG-CCCACAAC-TCGTGGCAC-CTTTTT--CTT
2153819 TT-AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCATCTTTCTCCTTTTC
1 TTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCATCTTT-T-CTTTTC
*
2153882 AAAAGCCCACAAGTCAGTGGCAACCTT
64 -AAAGCCCACAACTC-GTGGC-ACCTT
2153909 CAAAGGCCCA
Statistics
Matches: 163, Mismatches: 11, Indels: 29
0.80 0.05 0.14
Matches are distributed among these distances:
93 25 0.15
94 2 0.01
95 11 0.07
96 20 0.12
97 48 0.29
98 50 0.31
99 2 0.01
100 5 0.03
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (93 bp):
TTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCATCTTTTCTTTTCAA
AGCCCACAACTCGTGGCACCTTTTTCTT
Found at i:2153903 original size:63 final size:63
Alignment explanation
Indices: 2153781--2153908 Score: 145
Period size: 63 Copynumber: 2.0 Consensus size: 63
2153771 CTCTTTTTCT
* * * * * *
2153781 TTTTAAAGTCCCCAACTTCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAAGTCCACAACTCCGTGGCACTCTTTCTCCCTTTTAAGCCCACAACTCAGTGGCAACC
*
2153844 TTTT-AAGTCCACAACTCCGTGGCA-TCTTTCT-CCTTTTCAAAAGCCCACAAGTCAGTGGCAAC
1 TTTTAAAGTCCACAACTCCGTGGCACTCTTTCTCCCTTTT---AAGCCCACAACTCAGTGGCAAC
2153906 C
63 C
2153907 TT
1 TT
2153909 CAAAGGCCCA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
60 6 0.11
61 6 0.11
62 18 0.33
63 25 0.45
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.32
Consensus pattern (63 bp):
TTTTAAAGTCCACAACTCCGTGGCACTCTTTCTCCCTTTTAAGCCCACAACTCAGTGGCAACC
Found at i:2154000 original size:49 final size:49
Alignment explanation
Indices: 2153940--2154763 Score: 812
Period size: 52 Copynumber: 16.8 Consensus size: 49
2153930 GGCATCTTCT
* * *
2153940 TTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * * *
2153989 TTTAAGACCAATGTTGCTGGCCTTGAATCTGCACATTGGCA-C-----C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* *
2154032 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACC-TTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* *
2154080 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCA-C-----C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
*
2154123 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * *
2154171 TTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCA-C-----C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* *
2154214 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCATTATCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC
* * * * *
2154266 TTTAAGTCCAGTGTCGTTGGCCTTGAATCAACATATTGGCGCCTTCGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-ATC
* *
2154318 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
*
2154367 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-ATC
* * * * * *
2154419 TTTAAGTCCAATGTCACTAGTCC-CGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCT-GGCCTTGAATCAGCATATTGGCACCTTTATC
*
2154468 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCATCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-ATC
* * * * * *
2154520 TTTAAGTCCAATGTCACTGG-TTCTGAATCAGCACAGTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCT-TGAATCAGCATATTGGCACCTTTATC
* *
2154569 TTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAGTGGCACCTTCATCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-ATC
* * * *
2154621 TTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* **
2154670 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCGTCTTCGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-ATC
** * *
2154722 TTTAA-TACCCAATGCCGTTGGCCTTGAATCAACATATTGGCA
1 TTTAAGT--CCAATATCGCTGGCCTTGAATCAGCATATTGGCA
2154764 TTCTTCTCAT
Statistics
Matches: 654, Mismatches: 83, Indels: 72
0.81 0.10 0.09
Matches are distributed among these distances:
43 114 0.17
44 3 0.00
47 2 0.00
48 81 0.12
49 202 0.31
50 1 0.00
51 4 0.01
52 216 0.33
53 31 0.05
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
Found at i:2154053 original size:43 final size:43
Alignment explanation
Indices: 2153940--2154411 Score: 359
Period size: 43 Copynumber: 10.0 Consensus size: 43
2153930 GGCATCTTCT
* *
2153940 TTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C-----C
* * * *
2153989 TTTAAGACCAATGTTGCTGGCCTTGAATCTGCACATTGGCACC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* *
2154032 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGTC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C----C
*
2154080 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
*
2154123 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C----C
* * *
2154171 TTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* *
2154214 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCATTATCATC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATT-G-G-C---A-C--C
* * * * * *
2154266 TTTAAGTCCAGTGTCGTTGGCCTTGAATCAACATATTGGCGCCTTCGTCATC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATT---G-----G-CACC
* *
2154318 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA----C--C
* *
2154367 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
2154410 TT
1 TT
2154412 CGTCATCTTT
Statistics
Matches: 356, Mismatches: 36, Indels: 68
0.77 0.08 0.15
Matches are distributed among these distances:
43 116 0.33
44 4 0.01
45 2 0.01
46 1 0.00
47 2 0.01
48 78 0.22
49 77 0.22
50 1 0.00
52 70 0.20
54 1 0.00
55 1 0.00
58 3 0.01
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (43 bp):
TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
Found at i:2154124 original size:21 final size:21
Alignment explanation
Indices: 2154100--2154168 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
2154090 ATGTCGCTGG
2154100 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
*
2154121 CCTTTAAGTC--CAATATCGCTGG--
1 CCTTGAA-TCAGC-ATAT---TGGCA
2154143 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
2154164 CCTTG
1 CCTTG
2154169 TCTTTAAGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 18
0.65 0.04 0.32
Matches are distributed among these distances:
19 3 0.08
20 1 0.03
21 17 0.46
22 12 0.32
23 1 0.03
24 3 0.08
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:2154158 original size:22 final size:22
Alignment explanation
Indices: 2154093--2154158 Score: 52
Period size: 22 Copynumber: 3.0 Consensus size: 22
2154083 AAGACCAATG
2154093 TCGCTGGCCTTGAATCAGCATA
1 TCGCTGGCCTTGAATCAGCATA
*
2154115 T---TGGCACCTTTAAGTC--CAATA
1 TCGCTGG--CCTTGAA-TCAGC-ATA
2154136 TCGCTGGCCTTGAATCAGCATA
1 TCGCTGGCCTTGAATCAGCATA
2154158 T
1 T
2154159 TGGCACCTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 18
0.62 0.04 0.34
Matches are distributed among these distances:
19 3 0.09
20 1 0.03
21 12 0.36
22 13 0.39
23 1 0.03
24 3 0.09
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (22 bp):
TCGCTGGCCTTGAATCAGCATA
Found at i:2154405 original size:101 final size:101
Alignment explanation
Indices: 2154213--2154763 Score: 775
Period size: 101 Copynumber: 5.4 Consensus size: 101
2154203 ACATTGGCAC
* * * * *
2154213 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCATTATCATCTTTAAGTCCAGT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAGTCCAAT
* * *
2154278 GTCGTTGGCCTTGAATCAACATATTGGCGCCTTCGTCAT
63 ATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
*
2154317 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
2154382 GCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
* * *
2154418 CTTTAAGTCCAATGTCACTAGTCC-CGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATAT
1 CTTTAAGTCCAATGTCGCT-GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATAT
*
2154482 CGCTGGCCTTGAATCAGCATATTGGCGCCTTCATCAT
65 CGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
* * *
2154519 CTTTAAGTCCAATGTCACTGG-TTCTGAATCAGCACAGTGGCACCTTCATCTTTAAGTCCAATAT
1 CTTTAAGTCCAATGTCGCTGGCCT-TGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATAT
* * * *
2154583 TGCTGGCCTTGAATCAGCATAGTGGCACCTTCATCAT
65 CGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
*
2154620 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
* *
2154685 GCTAGCCTTGAATCAGCATATTGGCGTCTTCGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
* * * *
2154721 CTTTAA-TACCCAATGCCGTTGGCCTTGAATCAACATATTGGCA
1 CTTTAAGT--CCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
2154764 TTCTTCTCAT
Statistics
Matches: 409, Mismatches: 32, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
100 2 0.00
101 330 0.81
102 36 0.09
104 41 0.10
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (101 bp):
CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
GCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
Found at i:2154521 original size:202 final size:193
Alignment explanation
Indices: 2153940--2154763 Score: 911
Period size: 202 Copynumber: 4.2 Consensus size: 193
2153930 GGCATCTTCT
* * * ** * *
2153940 TTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTTG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATATCG
* *
2154005 CTGGCCTTGAATCTGCACATTGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTG
66 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATTG
* * *
2154070 GCACCTT-GTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATT-G-G----CA-C--C
131 GCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCATCATC
* * *
2154123 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATATCG
* *
2154187 TTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTG
66 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATTG
* * * * * *
2154252 GCGCCATTATCATCTTTAAGTCCAGTGTCGTTGGCCTTGAATCAACATATTGGCGCCTTCGTCAT
131 GCACC--T-TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCATCAT
2154317 C
193 C
*
2154318 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATATCG
* * * * * * *
2154383 CTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCACTAGTCC-CGAAT
66 CTGGCCTTGAATCAGCACATT---G-----G-CACCTTTAAGTCCAATATC-GTTGGCCTTGAAT
2154447 CAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCT
121 CAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCT
2154512 TCATCATC
186 TCATCATC
* * * * * *
2154520 TTTAAGTCCAATGTCACTGG-TTCTGAATCAGCACAGTGGCACCTTCATCTTTAAGTCCAATATT
1 TTTAAGTCCAATGTCGCTGGCCT-TGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATATC
* * *
2154584 GCTGGCCTTGAATCAGCATAGTGGCACCTTCATCATCTTTAAGTCCAATGTCGTTGGCCTTGAAT
65 GCTGGCCTTGAATCAGCACATTGG------CA-C--CTTTAAGTCCAATATCGTTGGCCTTGAAT
* *
2154649 CAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCGTCT
121 CAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCT
*
2154714 TCGTCATC
186 TCATCATC
* * *
2154722 TTTAA-TACCCAATGCCGTTGGCCTTGAATCAACATATTGGCA
1 TTTAAGT--CCAATGTCGCTGGCCTTGAATCAGCATATTGGCA
2154764 TTCTTCTCAT
Statistics
Matches: 552, Mismatches: 52, Indels: 54
0.84 0.08 0.08
Matches are distributed among these distances:
182 85 0.15
183 43 0.08
184 1 0.00
185 1 0.00
186 35 0.06
187 1 0.00
188 1 0.00
192 1 0.00
193 1 0.00
194 1 0.00
195 45 0.08
196 35 0.06
199 5 0.01
201 6 0.01
202 225 0.41
203 26 0.05
204 2 0.00
205 34 0.06
206 4 0.01
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (193 bp):
TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATATCG
CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATTG
GCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCATCATC
Found at i:2155443 original size:21 final size:20
Alignment explanation
Indices: 2155413--2155451 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
2155403 CACATTTTTG
2155413 TCTAAATGTATCGATACATT
1 TCTAAATGTATCGATACATT
2155433 TCTAGAATGTATCGATACA
1 TCTA-AATGTATCGATACA
2155452 AGGTCCCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (20 bp):
TCTAAATGTATCGATACATT
Found at i:2155512 original size:19 final size:18
Alignment explanation
Indices: 2155487--2155551 Score: 68
Period size: 19 Copynumber: 3.8 Consensus size: 18
2155477 ATTTCAACAA
2155487 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
*
2155505 TGTTGTATTGATAC--AA-
1 T-TTGTATCGATACATAAG
2155521 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
2155537 TTTTGTATCGATACA
1 -TTTGTATCGATACA
2155552 ATGTATCACT
Statistics
Matches: 38, Mismatches: 2, Indels: 13
0.72 0.04 0.25
Matches are distributed among these distances:
13 10 0.26
15 2 0.05
17 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:2155526 original size:32 final size:32
Alignment explanation
Indices: 2155489--2155558 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
2155479 TTCAACAATT
*
2155489 TGTATCGATACATAAGTGTTGTATTGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
2155521 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
2155553 TGTATC
1 TGTATC
2155559 ACTACGAAGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Done.