genome.fa.s760.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold760
Parameters: 2 7 7 80 10 50 1000
Length:  42546

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15--53	1	39.0	1	94	0	69	97	0	2	0	0.17
51--4583	508	8.9	508	94	0	7728	28	23	19	28	1.98
5686--5742	30	1.9	30	100	0	114	24	26	19	29	1.98
5718--6490	70	12.0	61	73	15	337	20	32	12	33	1.91
5772--6327	70	7.9	69	79	14	506	20	33	12	33	1.90
6050--6413	87	4.0	87	80	11	449	20	33	12	33	1.90
6161--6327	34	4.9	34	87	6	239	20	34	11	32	1.90
5955--6517	191	2.9	189	90	6	854	20	32	12	34	1.90
5834--6542	261	2.8	251	82	13	861	20	33	11	33	1.89
6025--6483	121	3.9	120	71	16	415	20	33	12	33	1.90
6354--6522	34	4.9	33	86	10	232	20	32	12	34	1.90
6195--6483	158	1.8	157	93	0	497	20	33	12	33	1.90
6336--6522	71	2.7	70	90	6	281	19	33	12	34	1.90
6357--6575	104	2.1	103	81	9	250	22	35	12	29	1.91
6596--7218	49	12.9	49	85	5	815	25	25	17	31	1.97
6591--7218	98	6.5	98	92	3	906	25	25	17	31	1.97
6887--7161	43	6.0	43	84	11	334	25	25	18	30	1.98
7222--7348	67	1.9	68	85	1	175	24	25	12	37	1.90
8130--8196	33	2.0	33	88	0	98	34	11	13	40	1.81
8150--8174	13	1.9	13	100	0	50	36	16	16	32	1.90
8237--8261	13	1.9	13	100	0	50	32	16	16	36	1.90
8270--8399	52	2.5	52	90	3	192	33	18	16	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9356--9388	17	1.9	17	100	0	66	36	39	0	24	1.56
12356--12381	13	2.0	13	100	0	52	30	15	15	38	1.88
14897--14935	13	3.0	13	96	0	69	35	15	17	30	1.91
14921--14999	20	3.7	20	78	15	77	44	15	15	25	1.85
18848--18892	21	2.1	21	84	8	56	22	20	4	53	1.63
21100--21125	13	2.0	13	100	0	52	30	15	15	38	1.88
23641--23679	13	3.0	13	96	0	69	35	15	17	30	1.91
23665--23743	20	3.7	20	78	15	77	44	15	15	25	1.85
27592--27636	21	2.1	21	84	8	56	22	20	4	53	1.63
29852--29877	13	2.0	13	100	0	52	30	15	15	38	1.88
33213--33252	13	3.0	13	89	7	62	30	17	15	37	1.90
35741--35804	32	2.0	33	84	9	87	40	15	15	28	1.88
41878--41953	20	3.7	20	69	19	66	25	17	14	43	1.86
41940--41978	13	3.0	13	96	0	69	30	17	15	35	1.91

Tables:   1

The End!