genome.fa.s771.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold771
Parameters: 2 7 7 80 10 50 1000
Length:  63697

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797--2166	81	4.7	78	74	9	293	35	15	21	27	1.94
5227--5732	61	8.3	62	82	5	514	30	18	25	26	1.98
5224--5732	123	4.2	123	82	4	575	30	18	24	26	1.98
6702--6778	21	3.5	21	79	13	75	0	9	7	83	0.82
6729--6782	20	2.9	18	80	17	58	0	1	12	85	0.69
6741--6780	10	4.0	10	84	9	55	0	0	12	87	0.54
16868--16898	4	7.8	4	100	0	62	77	0	0	22	0.77
18898--19273	79	4.8	79	76	9	318	35	12	22	29	1.91
18934--19274	158	2.2	158	79	8	365	37	12	21	28	1.90
19229--19302	28	2.6	28	85	8	114	33	21	21	22	1.97
19151--19363	107	2.0	106	81	9	247	35	15	22	26	1.94
22698--22876	35	5.1	35	89	2	234	23	21	9	45	1.80
22698--23484	105	7.6	105	78	8	702	23	21	11	43	1.85
22698--22911	35	6.1	35	84	4	216	24	21	9	45	1.81
22753--23072	161	2.0	161	80	4	369	23	22	11	43	1.85
22698--23116	231	1.8	231	85	0	595	23	21	10	43	1.84
22928--23484	35	15.9	35	83	2	541	23	22	12	42	1.86
27435--27555	52	2.3	52	97	0	224	28	18	18	34	1.94
27435--27575	52	2.7	51	90	4	212	30	17	18	33	1.94
27564--27588	13	1.9	13	100	0	50	36	16	16	32	1.90
27653--27677	13	1.9	13	100	0	50	32	16	16	36	1.90
27631--27697	33	2.0	33	88	0	98	40	13	11	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28586--29256	166	4.1	162	80	6	660	32	8	7	51	1.61
28585--29256	331	2.0	326	81	7	786	32	8	7	51	1.61
30984--31754	156	4.9	155	75	8	591	25	14	19	40	1.90
34671--34705	17	2.1	17	94	0	61	45	2	0	51	1.16
34712--34755	24	1.9	24	86	9	65	65	0	0	34	0.93
34767--34858	41	2.2	43	79	15	102	55	3	0	41	1.16
34698--34848	72	2.1	73	80	9	170	54	1	0	43	1.16
35232--35275	2	22.0	2	100	0	88	50	0	0	50	1.00
35848--35883	3	12.0	3	100	0	72	33	0	0	66	0.92
36263--36292	15	2.0	15	100	0	60	46	0	0	53	1.00
37119--37387	133	2.0	135	88	2	400	43	8	3	44	1.51
40103--40177	33	2.2	35	83	9	93	50	1	4	44	1.29
40637--40675	18	2.2	18	100	0	78	15	10	33	41	1.81
46319--46344	4	6.5	4	100	0	52	50	23	0	26	1.50
46309--46365	8	7.2	8	84	2	53	49	14	0	36	1.43
46323--46361	12	3.2	12	85	0	51	48	15	0	35	1.45
46935--46979	20	2.2	20	92	0	72	31	2	6	60	1.35
47508--47546	19	2.1	18	85	4	51	53	2	0	43	1.14
47834--47914	29	2.7	29	84	7	92	55	0	1	43	1.07
47877--47947	24	3.0	23	77	6	79	60	0	1	38	1.06
47867--47939	24	3.0	25	80	8	71	63	0	1	35	1.04
48022--48057	6	6.0	6	96	0	54	55	27	16	0	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55644--55671	2	14.0	2	100	0	56	50	0	50	0	1.00
58681--58725	22	2.0	22	83	8	56	44	4	0	51	1.21
58722--58746	12	2.1	12	100	0	50	68	0	0	32	0.90

Tables:   1

The End!