Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold773
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28215
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:4198 original size:19 final size:19
Alignment explanation
Indices: 4155--4209 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
4145 TGCCAGTTTT
**
4155 ATGTATCGATACAATTGTGC
1 ATGTATCGATACAA-TGAAC
4175 ATGTATCGATACAATGAAC
1 ATGTATCGATACAATGAAC
*
4194 ATGTATTGATACAATG
1 ATGTATCGATACAATG
4210 TATCGATACA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (19 bp):
ATGTATCGATACAATGAAC
Found at i:5092 original size:166 final size:166
Alignment explanation
Indices: 4815--5285 Score: 490
Period size: 166 Copynumber: 2.8 Consensus size: 166
4805 CGAGAGGACT
** * * *** * *
4815 TGAAAAGTTTTAAAAACATCTATATCCATATGGAAGGCCATAGGAATAATAGAAATCTAAAGAAA
1 TGAAAAGTTTTAAAAATTTCTATACCCTTACAAAAGACCATAGGAATAATAGAAATTTAAAGAAA
* * * * *
4880 ATGACTAAGTTGATGATTTTTCTTCTAAAATCTAAATTTTCTATTTAGTCCCTAAACTTTTGAAA
66 ATGACTAAGATGATGATTTTTCTTTTAAAAACTAAACTTGCTATTTAGTCCCTAAACTTTTGAAA
* *
4945 ATTTCATTTCATACTCAATGAAAAACCAAAAAG-ATA
131 ATTTCATTTCATACCCAATGAAAAACC-AAAAGCACA
** *
4981 TGAAAAGTTTTAAAAAATTT-TATACCCCTT-TGAAAGACTATAGGAATAATAGAAATTTAAAGA
1 TGAAAAGTTTT-AAAAATTTCTATA-CCCTTACAAAAGACCATAGGAATAATAGAAATTTAAAGA
* * * *
5044 AAATGACTAAGATAGCT-ATTTTTCTTTTAAAACCTAAACTTGCTATTTAGTCCATTAACTTTTG
64 AAATGACTAAGAT-GATGATTTTTCTTTTAAAAACTAAACTTGCTATTTAGTCCCTAAACTTTTG
* * * *
5108 AAAATTTCATTTCATACCCGATGGAAAACCGAGAGCACA
128 AAAATTTCATTTCATACCCAATGAAAAACCAAAAGCACA
* * *
5147 TGAAAAGTTTTAAAAATTTCTATACCCTTACAAAAGGCCATAGGAATAATAAAAATCTT-TA-AA
1 TGAAAAGTTTTAAAAATTTCTATACCCTTACAAAAGACCATAGGAATAATAGAAAT-TTAAAGAA
* ** * *
5210 AAT-ACCTAAAATGATGATTTCACCTTTAAAAACTAAAACTTGCTATTTAATCCCTAAACTTTT-
65 AATGA-CTAAGATGATGATTTTTCTTTTAAAAACT-AAACTTGCTATTTAGTCCCTAAACTTTTG
*
5273 AAATATTTTATTT
128 AAA-ATTTCATTT
5286 TAGTCCCTAG
Statistics
Matches: 256, Mismatches: 38, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
164 3 0.01
165 44 0.17
166 196 0.77
167 13 0.05
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (166 bp):
TGAAAAGTTTTAAAAATTTCTATACCCTTACAAAAGACCATAGGAATAATAGAAATTTAAAGAAA
ATGACTAAGATGATGATTTTTCTTTTAAAAACTAAACTTGCTATTTAGTCCCTAAACTTTTGAAA
ATTTCATTTCATACCCAATGAAAAACCAAAAGCACA
Found at i:15490 original size:17 final size:18
Alignment explanation
Indices: 15468--15508 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
15458 AAGGTATTGC
15468 TTTAATTTT-CTAAAATT
1 TTTAATTTTACTAAAATT
*
15485 TTTAATTTTATTAAAATT
1 TTTAATTTTACTAAAATT
*
15503 ATTAAT
1 TTTAAT
15509 GCATAAACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTAATTTTACTAAAATT
Found at i:16332 original size:57 final size:57
Alignment explanation
Indices: 16263--16377 Score: 205
Period size: 57 Copynumber: 2.0 Consensus size: 57
16253 GGAAATGACC
16263 ACTTTGACCTAAAATACTAGGTCTTT-CTAATGGTCCCTAAACTTTTCTAAATTTGCA
1 ACTTTGACCTAAAATACTAGGT-TTTCCTAATGGTCCCTAAACTTTTCTAAATTTGCA
*
16320 ACTTTGACCTAAAATGCTAGGTTTTCCTAATGGTCCCTAAACTTTTCTAAATTTGCA
1 ACTTTGACCTAAAATACTAGGTTTTCCTAATGGTCCCTAAACTTTTCTAAATTTGCA
16377 A
1 A
16378 ATTAGTCCCT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
56 3 0.05
57 53 0.95
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (57 bp):
ACTTTGACCTAAAATACTAGGTTTTCCTAATGGTCCCTAAACTTTTCTAAATTTGCA
Found at i:17565 original size:19 final size:19
Alignment explanation
Indices: 17510--17565 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
17500 GTAAAAATCC
* *
17510 AAAATTAAAAT-TAAAAAT
1 AAAATTAAAATGAAAAAAA
* * *
17528 TAAATTAAAATTAACAAAA
1 AAAATTAAAATGAAAAAAA
*
17547 AAAATTGAAATGAAAAAAA
1 AAAATTAAAATGAAAAAAA
17566 TAAGATCACA
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 10 0.34
19 19 0.66
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (19 bp):
AAAATTAAAATGAAAAAAA
Found at i:18868 original size:65 final size:65
Alignment explanation
Indices: 18759--19043 Score: 216
Period size: 65 Copynumber: 4.4 Consensus size: 65
18749 ACTAGGGTGG
** * * *
18759 AACCTAAGTTGAAAAGGCATTGGCCAGTACAAAACCATATGAACCAACTAAAGATGGCCAAGGCG
1 AACCTAAGTCAAAAAGG-GTTGGCTAGGACAAAACCATATGAACCAACTAAAGATGGCCAAGGCG
18824 A
65 A
* * * * *** * **
18825 AACCCAAGTCGAAAAGGGTTGGCTAGGACAAAACCATACGAACCAAATTTGGATGACCAAGATGA
1 AACCTAAGTCAAAAAGGGTTGGCTAGGACAAAACCATATGAACCAACTAAAGATGGCCAAGGCGA
* ** ** *
18890 AACCTAAGTCAAAAAGGGTTGG-TCAAGATGAAACCATATGAACCAACTTTAGATGG-CTAGAGC
1 AACCTAAGTCAAAAAGGGTTGGCT-AGGACAAAACCATATGAACCAACTAAAGATGGCCAAG-GC
*
18953 AA
64 GA
* * * ** ** *
18955 AACCTGAGTCAAAAAAGGGTTGGTTGGGATGAAACCATATGAACCAACTAAAGATGG-CAACACA
1 AACCTAAGTC-AAAAAGGGTTGGCTAGGACAAAACCATATGAACCAACTAAAGATGGCCAAGGCG
19019 A
65 A
* *
19020 AACTTAAGTCGAAAAAAGGTTGGC
1 AACCTAAGTC-AAAAAGGGTTGGC
19044 CAAGATGAAA
Statistics
Matches: 176, Mismatches: 39, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
64 4 0.02
65 114 0.65
66 57 0.32
67 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.17
Consensus pattern (65 bp):
AACCTAAGTCAAAAAGGGTTGGCTAGGACAAAACCATATGAACCAACTAAAGATGGCCAAGGCGA
Found at i:18992 original size:66 final size:65
Alignment explanation
Indices: 18790--19067 Score: 222
Period size: 65 Copynumber: 4.3 Consensus size: 65
18780 GGCCAGTACA
** * * * *
18790 AAACCATATGAACCAACTAAAGATGGCCAAGGCGAAACCCAAGTC-GAAAAGGGTTGG-CTAGGA
1 AAACCATATGAACCAACTAAAGATGG-CAACACAAAACCTAAGTCAAAAAAGGGTTGGTC-AAGA
**
18853 CA
64 TG
* * *** * * **
18855 AAACCATACGAACCAAATTTGGATGACCAAGATGAAACCTAAGTC-AAAAAGGGTTGGTCAAGAT
1 AAACCATATGAACCAACTAAAGATG-GCAACACAAAACCTAAGTCAAAAAAGGGTTGGTCAAGAT
18919 G
65 G
** * * * ***
18920 AAACCATATGAACCAACTTTAGATGGCTAGAGCAAAACCTGAGTCAAAAAAGGGTTGGTTGGGAT
1 AAACCATATGAACCAACTAAAGATGGCAACA-CAAAACCTAAGTCAAAAAAGGGTTGGTCAAGAT
18985 G
65 G
* *
18986 AAACCATATGAACCAACTAAAGATGGCAACACAAAACTTAAGTCGAAAAAA-GGTTGGCCAAGAT
1 AAACCATATGAACCAACTAAAGATGGCAACACAAAACCTAAGTC-AAAAAAGGGTTGGTCAAGAT
19050 G
65 G
* *
19051 AAACCTTTTGAACCAAC
1 AAACCATATGAACCAAC
19068 ATTGGTATCC
Statistics
Matches: 172, Mismatches: 36, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
64 4 0.02
65 117 0.68
66 51 0.30
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.17
Consensus pattern (65 bp):
AAACCATATGAACCAACTAAAGATGGCAACACAAAACCTAAGTCAAAAAAGGGTTGGTCAAGATG
Found at i:19204 original size:65 final size:66
Alignment explanation
Indices: 19082--19210 Score: 156
Period size: 65 Copynumber: 2.0 Consensus size: 66
19072 GTATCCAAGG
* *
19082 TGGAACCTAAGTCGAAAAAGGATTGACTAGGATGGAACCATACAAATCAACTAAGGGTGACTAGA
1 TGGAACCTAAGTCGAAAAAGGATTGACTAGGATGAAACCATACAAATCAACTAAGGGTAACTAGA
19147 A
66 A
* * * * *
19148 TGGAACTTAAGTTG-AAAAGGGTTGACTAGGGTGAAACCATA-ATAGTCAA-TAGAGGGTAACTA
1 TGGAACCTAAGTCGAAAAAGGATTGACTAGGATGAAACCATACA-AATCAACTA-AGGGTAACTA
19210 G
64 G
19211 GATGAAATCT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
64 3 0.06
65 39 0.72
66 12 0.22
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.21
Consensus pattern (66 bp):
TGGAACCTAAGTCGAAAAAGGATTGACTAGGATGAAACCATACAAATCAACTAAGGGTAACTAGA
A
Found at i:19591 original size:55 final size:56
Alignment explanation
Indices: 19457--19788 Score: 342
Period size: 55 Copynumber: 5.9 Consensus size: 56
19447 GACGCCTTTT
* * * *
19457 CTTTT-AAAGCCCACCCGAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATGCTTTTT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA--C---TC
*
19516 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCCCAAAGAGCAGGAC-C
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACTC
* * * * * *
19571 CTTTTCGAAGCCCACACAAGTTGGTGTCA-TTTTTCAGTCCCCAAAGAGTAGGACAC
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT-AGTCCTCAAAGAGCAGGACTC
*
19627 C-TTTCAAAGCCCACACAAGTTGGTGGCA--TTTTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT--AGTCCTCAAAGAGCAGGACTC
* * *
19682 CTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCACGA-TGC
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACT-C
* * * *
19737 C-TTTCAAAGCCCACACGAGTTGGTGGCACTTTTTACTCCTCAATGAGCAGGA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
19789 TACACTTTAT
Statistics
Matches: 239, Mismatches: 24, Indels: 24
0.83 0.08 0.08
Matches are distributed among these distances:
54 10 0.04
55 174 0.73
56 4 0.02
57 3 0.01
59 6 0.03
60 23 0.10
61 19 0.08
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (56 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACTC
Found at i:20546 original size:21 final size:21
Alignment explanation
Indices: 20520--20596 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
20510 AAATTATCCA
20520 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
* *
20541 AATGTATCGATACTTTTGTGG
1 AATGTATCGATACATTTGTAG
* *
20562 AATGTATCGATACA-TTCTACA
1 AATGTATCGATACATTTGTA-G
20583 AATGTATCGATACA
1 AATGTATCGATACA
20597 GGGTCCCAAC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
20 3 0.06
21 46 0.94
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:20670 original size:32 final size:32
Alignment explanation
Indices: 20634--20696 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
20624 TTCAACATTT
*
20634 TGTATCGATACACAAGTTTTGTATCGATACAA
1 TGTATCGATACACAAGTATTGTATCGATACAA
* *
20666 TGTATCGATATATAAGTATTGTATCGATACA
1 TGTATCGATACACAAGTATTGTATCGATACA
20697 TAATTAGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACACAAGTATTGTATCGATACAA
Found at i:23153 original size:51 final size:53
Alignment explanation
Indices: 23089--23429 Score: 208
Period size: 52 Copynumber: 6.5 Consensus size: 53
23079 AGTTTCTCAA
* * * *
23089 TTCTCCACAATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
* *
23140 TT-TTCTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
* * * *** * * *
23194 TTCTTCACAATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTAT-TTC-CAAAAACACCAAT
** ** * * * *
23247 CCCGTT-A-TTTCGAGGGGATACTCCAACCCCGGTTTTA--TCGCTAAAACACTAAT
1 TTC-TTCACAATC--GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAAT
* * *
23300 TT-TTCCACAATCGGGGATACTCCAA-TCCCGGTTTTATTTTC-AAAACGCCAATT
1 TTCTT-CACAATCGGGGATACTCCAACT-CCGATTTTATTTCCAAAAACACCAA-T
* *
23353 TTCCTT--TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAAT
1 TT-CTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
*
23405 TT-TTCACAATCGAGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
23430 CTCGTTATTT
Statistics
Matches: 221, Mismatches: 44, Indels: 49
0.70 0.14 0.16
Matches are distributed among these distances:
50 4 0.02
51 35 0.16
52 85 0.38
53 43 0.19
54 46 0.21
55 5 0.02
56 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:23233 original size:27 final size:25
Alignment explanation
Indices: 23203--23286 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 25
23193 TTTCTTCACA
23203 ATCGGGGATACTCCAACCCCGTTAAT
1 ATCGGGGATACTCCAACCCCGTT-AT
23229 CATCGGGGATACTCCAACCCCGTTAT
1 -ATCGGGGATACTCCAACCCCGTTAT
* *
23255 TTCGAGGGGATACTCCAACCCCGGTTTT
1 ATC--GGGGATACTCCAACCCC-GTTAT
23283 ATCG
1 ATCG
23287 CTAAAACACT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.04
26 3 0.06
27 40 0.78
28 6 0.12
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (25 bp):
ATCGGGGATACTCCAACCCCGTTAT
Found at i:23312 original size:106 final size:105
Alignment explanation
Indices: 23152--23494 Score: 322
Period size: 108 Copynumber: 3.2 Consensus size: 105
23142 TTCTATAATC
* *
23152 GGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACCCCGATTTTA-TTCC-AAAAACACCAATTT-TTCACAATCGGGGATACTCC
23217 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCGA
63 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCGA
* * *
23260 GGGGATACTCCAACCCCGGTTTTA-TCGCTAAAACACTAATTTTTCCACAATCGGGGATACTCCA
1 GGGGATACTCCAACCCCGATTTTATTC-CAAAAACACCAATTTTT-CACAATCGGGGATACTCCA
* * ** * * * ** * *
23324 ATCCCGGTTTTATTTTC---AAAACGCCAATTTTCCTTTA-ATC--
64 A-CCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATTTCGA
* * *
23364 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTA-TTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
* * *
23429 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
65 CCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTA-TTTCGA
*
23472 GGGGATACTCCAATCCCGATTTT
1 GGGGATACTCCAACCCCGATTTT
23495 TTTTTCTTCT
Statistics
Matches: 181, Mismatches: 38, Indels: 32
0.72 0.15 0.13
Matches are distributed among these distances:
102 2 0.01
103 6 0.03
104 46 0.25
105 23 0.13
106 46 0.25
107 10 0.06
108 48 0.27
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (105 bp):
GGGGATACTCCAACCCCGATTTTATTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCGA
Found at i:23449 original size:28 final size:28
Alignment explanation
Indices: 23413--23489 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
23403 ATTTTTCACA
* * *
23413 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
23441 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*** *
23469 CGAGGGGATACTCCAATCCCG
1 ATCGGGGATACTCCAACCCCG
23490 ATTTTTTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:23456 original size:211 final size:212
Alignment explanation
Indices: 23092--23494 Score: 634
Period size: 211 Copynumber: 1.9 Consensus size: 212
23082 TTCTCAATTC
* *
23092 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* *
23157 TACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
* *
23222 CGTTAATCATCGGGGATACTCCAACCCCGTTA-TTTCGAGGGGATACTCCAACCCCGGTTTTATC
131 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGATTTTATC
23286 GCTAAAACACTAATTTT
196 GCTAAAACACTAATTTT
* * *
23303 TCCACAATCGGGGATACTCCAA-TCCCGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGGGGATACTCCAACT-CCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
*
23367 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* * *
23430 CTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAATCCCGATTTT
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGATTTT
23495 TTTTTCTTCT
Statistics
Matches: 175, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
210 29 0.17
211 85 0.49
212 61 0.35
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (212 bp):
TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGATTTTATC
GCTAAAACACTAATTTT
Done.