genome.fa.s775.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold775
Parameters: 2 7 7 80 10 50 1000
Length:  75633

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5104--5683	310	1.9	310	90	1	921	35	13	17	33	1.89
9115--9183	33	2.1	32	82	12	79	46	10	10	33	1.71
16141--16174	17	2.0	17	94	0	59	29	2	17	50	1.61
16340--16471	57	2.3	58	79	11	148	31	9	13	45	1.76
19162--19401	76	3.3	73	77	6	218	32	20	13	34	1.91
19672--19986	165	1.9	166	83	5	406	43	15	11	29	1.82
20014--20098	41	2.1	41	95	0	152	48	8	15	28	1.73
21896--21966	24	2.9	25	72	8	65	35	1	2	60	1.20
21880--21938	14	3.9	14	77	14	64	38	0	0	61	0.96
21877--21937	31	1.9	33	93	6	108	40	0	0	59	0.98
25123--25176	20	2.6	21	88	5	83	40	9	16	33	1.80
25123--25196	21	3.6	20	80	12	80	39	10	17	32	1.84
25232--25371	52	2.7	52	77	2	147	31	12	12	44	1.78
27808--27908	27	3.7	27	89	0	139	24	24	19	30	1.98
30462--30535	32	2.3	32	92	0	121	36	14	14	33	1.88
30460--30522	19	3.6	19	70	24	66	36	12	15	34	1.86
31525--31565	20	2.0	21	86	13	59	17	14	19	48	1.81
35309--35358	17	3.0	17	76	5	57	32	12	4	52	1.57
36182--36244	33	1.9	32	87	12	92	33	12	19	34	1.89
44625--44686	22	2.5	24	77	15	65	43	12	9	33	1.76
45145--45203	19	3.1	18	78	9	55	81	1	13	3	0.90
45163--45204	14	2.8	15	82	17	52	80	0	14	4	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45147--45204	10	5.9	10	74	9	57	82	1	12	3	0.86
45586--45650	23	2.8	23	75	13	62	52	0	0	47	1.00
45697--45749	25	2.1	26	92	3	90	26	13	41	18	1.87
48867--48913	2	23.5	2	100	0	94	0	48	0	51	1.00
48913--48947	2	17.5	2	100	0	70	48	0	0	51	1.00
57375--57406	16	2.0	16	93	0	55	40	6	21	31	1.78
63262--63287	13	2.0	13	100	0	52	38	15	15	30	1.88
63244--63307	33	2.0	32	87	9	94	40	17	14	28	1.88
65320--65528	104	2.0	104	90	1	330	29	26	14	30	1.95
66329--66371	21	2.1	20	86	4	59	60	0	0	39	0.97
66324--66371	20	2.4	21	80	13	57	60	0	0	39	0.97
67067--67132	27	2.4	27	78	14	73	46	6	10	36	1.63
67179--67299	54	2.2	54	83	2	163	45	5	10	38	1.63
67208--67296	27	3.3	27	72	7	83	43	4	13	38	1.64
67659--67847	36	5.3	35	73	12	109	43	15	12	28	1.84
67766--67866	36	2.8	36	83	8	134	47	11	12	27	1.77
68058--68157	37	2.7	37	78	10	105	44	11	14	31	1.79
68111--68234	62	2.0	61	82	13	148	41	8	15	34	1.78
69294--69375	28	2.9	28	83	7	96	25	17	32	24	1.96
69355--69526	52	3.3	51	78	7	186	32	11	25	30	1.90
69513--69584	27	2.6	27	86	2	90	20	20	34	23	1.96
69302--69685	211	1.8	211	88	2	592	30	12	27	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71746--71819	20	3.7	20	81	3	103	35	13	20	31	1.91
71764--71839	21	3.7	21	82	3	109	40	11	18	28	1.86
71746--71839	41	2.3	41	100	0	188	38	12	19	29	1.89
71878--71903	13	2.0	13	100	0	52	38	15	15	30	1.88
71860--71923	32	2.0	33	87	3	94	42	14	15	28	1.86
74410--74477	19	3.9	19	76	21	76	35	10	14	39	1.80
74412--74474	32	2.0	32	93	0	108	34	11	15	38	1.83
74431--74455	13	1.9	13	100	0	50	36	16	16	32	1.90
74516--74541	13	2.0	13	100	0	52	30	15	15	38	1.88
74497--74562	33	2.0	32	88	2	96	25	15	16	42	1.87

Tables:   1

The End!