genome.fa.s777.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold777
Parameters: 2 7 7 80 10 50 1000
Length:  39870

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1213	60	20.9	60	81	9	1280	25	30	19	25	1.98
1935--2010	21	3.6	21	82	7	91	35	11	15	36	1.85
2048--2140	19	4.8	19	96	4	161	36	10	15	37	1.82
3092--3433	52	6.6	51	79	7	332	30	25	10	33	1.90
3098--3433	105	3.2	104	81	6	340	30	25	11	32	1.90
3054--3433	157	2.4	157	93	2	631	30	25	11	33	1.91
3421--3492	28	2.6	28	86	0	90	22	33	19	25	1.97
3446--3649	78	2.6	78	79	2	212	24	29	16	29	1.97
4986--5114	52	2.5	52	93	0	222	30	18	16	34	1.93
5123--5147	13	1.9	13	100	0	50	36	16	16	32	1.90
5226--5250	13	1.9	13	100	0	50	32	16	16	36	1.90
5777--5831	29	1.9	29	85	10	78	47	5	5	41	1.49
10280--10370	19	4.7	19	80	13	78	30	17	14	37	1.90
10417--10445	13	2.2	13	100	0	58	41	17	13	27	1.87
10401--10465	33	2.0	33	90	6	105	38	13	18	29	1.89
11916--11950	15	2.3	15	95	0	61	42	0	28	28	1.56
13366--13418	22	2.4	22	90	0	88	39	15	7	37	1.75
15034--15235	79	2.6	79	80	4	203	30	15	28	25	1.96
15250--15586	52	6.4	52	68	17	178	30	12	26	30	1.92
15406--15476	27	2.6	27	86	2	88	22	19	32	25	1.98
15136--15528	107	3.7	106	71	11	318	30	13	26	28	1.95
15143--15588	212	2.1	212	85	5	607	31	13	26	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17943--17968	13	2.0	13	100	0	52	38	15	15	30	1.88
17922--17988	33	2.0	33	88	0	98	43	16	14	25	1.86
18008--18075	19	3.9	18	75	23	74	39	14	10	35	1.80
18030--18054	13	1.9	13	100	0	50	32	16	16	36	1.90
18011--18073	32	2.0	32	93	0	108	38	15	11	34	1.83
18131--18187	21	2.7	21	97	0	105	36	19	10	33	1.86
18191--18225	18	1.9	18	100	0	70	11	2	0	85	0.69
18193--18229	19	1.9	19	100	0	74	10	5	0	83	0.79
18910--19409	55	8.9	55	88	4	623	24	20	28	26	1.99
18958--19438	229	2.1	226	87	5	702	24	20	28	27	1.99
25708--25784	28	2.8	28	85	0	91	23	20	33	22	1.97
25629--25833	107	1.9	108	80	3	243	29	15	28	26	1.96
25768--26106	52	6.4	52	65	18	153	31	12	25	30	1.92
25924--25990	27	2.4	27	87	2	89	22	19	32	25	1.97
25983--26111	51	2.4	51	77	12	134	33	9	24	33	1.87
28475--28500	13	2.0	13	100	0	52	38	15	15	30	1.88
28454--28520	33	2.0	33	88	0	98	43	16	14	25	1.86
28540--28607	19	3.9	18	76	23	83	38	14	11	35	1.83
28562--28586	13	1.9	13	100	0	50	32	16	16	36	1.90
28543--28605	32	2.0	32	96	0	117	36	15	12	34	1.86
31939--31968	13	2.4	12	94	5	51	30	0	0	70	0.88
31989--32047	29	2.1	28	84	9	75	50	0	1	47	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33001--33094	49	1.9	49	83	12	122	46	1	1	51	1.15
35359--35390	14	2.3	14	100	0	64	53	6	0	40	1.26
36351--36380	16	1.9	15	93	6	51	70	0	0	30	0.88
36969--37038	20	3.5	20	64	14	54	52	1	0	45	1.09
36951--37033	40	2.1	39	82	8	107	49	1	0	49	1.08
37332--37387	7	8.1	7	78	4	51	21	25	10	42	1.85
37448--37495	25	1.9	26	87	8	73	39	2	2	56	1.23
37485--37541	25	2.3	26	82	14	75	33	0	1	64	1.04
37485--37542	11	5.3	11	76	15	66	34	0	1	63	1.04
38264--38299	17	2.1	18	89	5	56	47	0	0	52	1.00
38805--38852	21	2.4	20	83	10	62	54	0	0	45	0.99
38809--38845	14	2.6	14	82	0	56	59	0	0	40	0.97
38841--38879	14	2.8	14	85	11	53	41	0	0	58	0.98
39482--39523	18	2.3	18	84	8	50	45	2	11	40	1.54

Tables:   1

The End!