Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold779
Parameters: 2 7 7 80 10 50 1000
Length:  64621

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
136--185
16
3.1
16
88
2
64
52
2
0
46
1.12
4275--4325
21
2.6
19
77
14
59
52
0
1
45
1.12
7617--7641
2
12.5
2
100
0
50
48
0
0
52
1.00
7868--8009
49
2.9
50
77
6
146
55
4
2
37
1.34
7868--8006
16
8.4
16
74
7
109
55
4
2
37
1.35
7934--8006
33
2.2
32
88
7
110
58
2
1
36
1.21
10922--10963
21
2.0
20
86
9
57
35
4
0
59
1.19
14094--14173
36
2.2
36
84
4
99
52
3
2
41
1.33
14810--14848
17
2.2
19
86
9
55
58
2
0
38
1.12
14886--14926
17
2.4
18
80
12
50
70
0
0
29
0.87
15515--15560
20
2.4
19
82
14
58
56
0
0
43
0.99
16261--16308
21
2.3
20
80
19
55
47
2
0
50
1.12
16862--16974
35
3.5
32
79
8
86
42
0
0
55
1.12
16862--16930
30
2.2
31
82
5
77
43
1
1
53
1.18
16898--16973
35
2.2
35
87
0
107
42
0
0
57
0.98
18582--18623
16
2.4
19
84
11
54
33
2
2
61
1.21
18582--18614
15
2.1
16
88
5
50
27
3
3
66
1.21
25107--25153
20
2.4
20
89
10
71
46
0
0
53
1.00
33298--33335
19
2.0
19
85
10
51
57
0
5
36
1.21
35986--36014
15
1.9
15
100
0
58
44
6
13
34
1.71
40128--40167
20
2.0
21
95
5
73
57
0
0
42
0.98
40134--40176
20
2.2
20
83
8
52
60
0
4
34
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40192--40232
20
2.1
19
86
4
55
53
2
0
43
1.13
43855--43901
22
2.1
22
100
0
94
38
4
31
25
1.75
46737--46861
63
2.0
64
87
3
180
52
24
8
13
1.69
48351--48617
138
1.9
137
90
0
426
43
18
15
21
1.87
49544--49585
16
2.7
16
85
3
50
59
4
0
35
1.19
58601--58673
31
2.3
33
79
9
89
47
0
0
52
1.00
58618--58681
28
2.3
28
78
13
69
50
0
0
50
1.00
60067--60105
2
19.5
2
100
0
78
48
0
0
51
1.00
60500--60524
5
5.0
5
100
0
50
60
40
0
0
0.97
61288--61312
2
12.5
2
100
0
50
52
0
0
48
1.00
62288--62312
2
12.5
2
100
0
50
0
48
0
52
1.00
62312--62341
2
14.5
2
93
6
51
46
0
3
50
1.18
63037--63066
6
5.0
6
100
0
60
16
16
33
33
1.92
63274--63307
17
2.0
17
88
0
50
58
0
2
38
1.13
63332--63364
3
11.0
3
100
0
66
33
0
0
66
0.92
63949--63987
2
20.0
2
84
5
53
48
0
5
46
1.24

Tables:   1

The End!