genome.fa.s780.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold780
Parameters: 2 7 7 80 10 50 1000
Length:  177408

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3313--3338	8	3.2	8	100	0	52	15	0	23	61	1.33
3689--3729	22	2.0	20	86	13	57	31	21	4	41	1.74
5881--5931	20	2.5	20	87	0	66	35	15	15	33	1.90
5935--5985	20	2.5	21	83	3	68	41	15	13	29	1.86
10253--10277	13	1.9	13	100	0	50	36	16	16	32	1.90
10235--10298	32	2.0	33	87	3	94	39	15	14	31	1.87
17889--17935	21	2.2	22	88	7	71	38	8	6	46	1.60
19517--19583	33	2.0	33	88	0	98	34	11	13	40	1.81
19537--19561	13	1.9	13	100	0	50	36	16	16	32	1.90
19625--19649	13	1.9	13	100	0	50	32	16	16	36	1.90
19658--19778	52	2.3	52	94	0	215	35	18	17	28	1.93
23057--23086	8	3.8	8	95	0	51	33	0	16	50	1.46
24246--24293	19	2.5	19	80	6	53	66	6	0	27	1.15
26082--26184	51	2.0	51	96	0	188	46	6	16	30	1.73
26290--26520	80	2.9	79	77	7	216	34	11	25	29	1.90
28773--28908	51	2.6	52	85	1	184	41	10	17	30	1.83
29318--29374	16	3.6	15	80	4	51	40	17	10	31	1.84
29334--29376	16	2.7	16	82	7	52	41	18	9	30	1.82
29397--29478	32	2.6	32	80	3	94	32	10	14	41	1.81
29397--29491	16	5.9	16	74	4	75	32	9	15	42	1.80
29379--29521	48	3.0	48	81	2	135	32	9	14	42	1.79
37924--38098	79	2.2	79	85	4	228	33	14	24	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38054--38126	28	2.6	30	83	14	93	28	21	27	21	1.99
40644--40669	13	2.0	13	100	0	52	38	15	15	30	1.88
40656--40697	21	2.0	21	95	0	75	28	21	9	40	1.84
40722--40784	19	3.7	18	76	24	73	36	17	12	33	1.88
40715--40786	32	2.2	32	97	0	135	36	16	12	34	1.87
40741--40765	13	1.9	13	100	0	50	32	16	16	36	1.90
40844--40882	21	1.9	20	89	5	60	30	10	20	38	1.86
41598--41664	35	1.9	35	90	0	107	28	17	17	35	1.93
45595--45633	13	3.0	13	92	0	60	35	12	17	33	1.88
44864--47125	795	2.8	795	98	0	4380	30	13	27	29	1.94
46390--46428	13	3.0	13	92	0	60	35	12	17	33	1.88
47521--47545	13	1.9	13	100	0	50	32	16	16	36	1.90
55631--55655	13	1.9	13	100	0	50	32	16	16	36	1.90
55611--55678	33	2.1	33	89	8	104	36	16	14	32	1.89
59961--60003	22	2.0	22	90	4	70	30	18	0	51	1.47
61955--61994	20	2.0	21	90	5	64	32	10	15	42	1.79
66853--66885	15	2.1	16	88	11	50	12	15	18	54	1.71
76947--77148	64	3.1	62	80	10	203	32	13	12	41	1.82
77732--77777	24	1.9	24	90	0	74	54	13	15	17	1.71
80732--80774	17	2.5	17	82	10	52	2	2	13	81	0.89
81844--81897	19	2.8	20	85	2	83	37	12	18	31	1.89
82502--82548	19	2.3	20	85	10	69	46	23	2	27	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82509--82548	19	2.1	19	95	0	71	42	25	2	30	1.68
90770--90794	13	1.9	13	100	0	50	32	16	16	36	1.90
91703--91767	33	2.0	33	84	6	87	36	16	12	33	1.87
92214--92458	120	2.0	120	93	0	418	35	15	13	35	1.87
94483--94509	13	2.1	13	100	0	54	40	14	14	29	1.86
97824--97849	13	2.0	13	100	0	52	38	15	15	30	1.88
97887--97976	13	6.0	13	69	26	54	35	16	13	34	1.88
97901--97963	19	3.7	18	72	24	64	38	17	11	33	1.85
97805--97978	32	5.4	32	75	10	158	35	16	14	33	1.89
98627--98879	39	5.9	39	71	15	130	29	20	24	25	1.99
98625--99027	93	4.5	90	85	3	467	30	18	24	27	1.98
98843--99022	50	3.7	50	74	10	194	30	15	26	28	1.95
99049--99375	28	11.5	29	81	8	363	20	17	30	31	1.95
99095--99377	57	5.0	56	85	8	351	21	17	30	30	1.96
99095--99377	86	3.3	85	92	2	435	21	17	30	30	1.96
100810--100915	1	106.0	1	67	0	59	0	9	6	83	0.79
100810--100917	14	7.6	13	77	14	90	0	9	7	83	0.82
100810--100892	28	3.1	26	86	10	105	0	6	8	85	0.74
100821--100899	38	2.1	38	95	4	142	0	8	6	84	0.76
100810--100892	26	3.2	26	83	14	109	0	6	8	85	0.74
100835--100915	38	2.2	37	86	6	110	0	12	3	83	0.76
108213--108279	37	1.9	35	88	11	102	29	25	11	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108716--108743	13	2.2	13	100	0	56	39	17	14	28	1.89
108732--108782	20	2.6	20	87	3	68	27	13	19	39	1.90
109442--109494	20	2.6	21	87	3	72	39	13	16	30	1.87
109533--109558	13	2.0	13	100	0	52	38	15	15	30	1.88
111777--111821	22	2.1	21	84	8	56	55	4	17	22	1.60
113624--113654	15	2.1	15	93	0	53	48	16	22	12	1.80
115669--115748	20	3.8	20	75	15	79	26	15	15	43	1.85
115734--115772	13	3.0	13	96	0	69	30	17	15	35	1.91
115893--115939	21	2.3	21	79	20	55	34	19	4	42	1.70
115895--115937	20	2.2	19	84	16	52	32	18	4	44	1.71
118295--118320	13	2.0	13	100	0	52	38	15	15	30	1.88
123304--123370	36	1.9	35	85	11	93	29	26	11	31	1.92
123830--123886	13	3.9	13	76	24	60	33	15	17	33	1.92
123843--123924	19	4.6	19	78	17	104	29	13	19	37	1.90
123807--123903	32	3.0	32	92	1	158	30	13	18	37	1.89
126757--126795	16	2.4	16	95	0	69	17	25	28	28	1.98
127769--127793	13	1.9	13	100	0	50	36	16	16	32	1.90
127844--127906	33	1.9	33	90	6	101	34	11	17	36	1.85
135773--136374	53	11.4	52	78	13	511	38	1	4	54	1.33
135957--136052	44	2.1	46	83	9	126	35	2	5	57	1.33
135773--136562	160	5.1	153	75	15	570	38	2	4	54	1.33
135904--136212	98	3.0	99	79	14	326	38	1	4	55	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135773--136374	107	5.7	104	77	15	451	38	1	4	54	1.33
136353--136563	47	4.5	46	75	17	161	39	1	4	54	1.31
138082--138119	2	19.0	2	100	0	76	50	0	0	50	1.00
138374--138406	13	2.4	14	80	10	50	63	0	3	33	1.10
138546--138592	16	2.9	17	76	20	55	55	0	0	44	0.99
144519--144546	13	2.2	13	100	0	56	35	14	17	32	1.90
144584--144649	19	3.8	19	77	22	90	36	18	12	33	1.88
144605--144629	13	1.9	13	100	0	50	32	16	16	36	1.90
144586--144648	32	2.0	32	100	0	126	34	19	12	33	1.89
145063--145297	97	2.4	96	82	2	265	27	29	12	30	1.93
150227--150296	20	3.4	20	84	4	77	37	14	7	41	1.73
152110--152143	17	2.0	17	88	11	52	35	2	5	55	1.39
152877--152913	2	18.5	2	100	0	74	51	0	0	48	1.00
152986--153024	2	19.5	2	100	0	78	51	0	0	48	1.00
154682--154727	17	2.8	17	83	3	58	67	8	2	21	1.29
162738--162768	2	15.5	2	100	0	62	48	0	0	51	1.00
167739--167769	5	6.2	5	92	0	53	54	0	3	41	1.16
168075--168130	21	2.8	20	76	10	62	42	0	1	55	1.10
168115--168164	25	1.9	26	84	8	66	40	0	0	60	0.97
169880--169941	12	4.8	13	76	20	51	16	11	8	64	1.48
171002--171057	20	2.8	19	89	5	76	37	16	17	28	1.91
171109--171173	34	2.0	33	90	6	105	46	15	12	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175221--175251	15	2.1	15	93	0	53	48	16	22	12	1.80
177331--177381	13	3.9	13	97	0	93	35	17	15	31	1.92

Tables:   1

The End!