genome.fa.s781.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold781
Parameters: 2 7 7 80 10 50 1000
Length:  114877

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2100--2338	113	2.1	116	81	3	288	23	15	12	48	1.79
2100--2338	58	4.2	56	81	6	257	23	15	12	48	1.79
2199--2350	55	2.7	56	79	7	130	24	15	13	46	1.81
2326--2494	58	2.9	58	84	4	153	26	11	20	42	1.85
2386--2477	29	3.2	29	66	22	75	25	9	19	45	1.81
2352--2535	58	3.2	57	85	3	224	26	10	19	43	1.83
6218--6262	23	2.0	23	83	12	58	24	6	17	51	1.70
7242--7284	20	2.2	20	95	0	77	6	13	11	67	1.41
7253--7301	10	4.8	10	80	5	62	2	16	10	71	1.22
7586--7652	19	3.8	19	70	24	56	41	16	13	28	1.86
8283--8352	21	3.0	23	82	14	90	34	30	4	31	1.77
12949--13034	43	2.0	43	97	0	163	25	19	16	38	1.92
14360--14398	10	3.9	10	82	0	51	2	15	10	71	1.23
14658--14728	20	3.6	19	73	7	63	40	14	14	30	1.85
18364--18409	20	2.3	20	92	7	76	36	15	17	30	1.91
18370--18431	20	2.9	22	82	15	69	32	14	19	33	1.92
19270--19399	13	7.7	19	70	30	107	34	12	17	35	1.87
19271--19404	32	4.1	33	98	0	245	35	11	17	35	1.87
19291--19432	65	2.2	65	83	7	173	36	14	16	32	1.89
19442--19466	13	1.9	13	100	0	50	32	16	16	36	1.90
19475--19603	52	2.5	52	97	0	240	35	17	18	28	1.93
26434--26479	9	4.9	9	81	7	56	82	15	0	2	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27066--27124	31	2.0	29	83	6	73	38	25	5	30	1.77
27780--27932	66	2.3	64	83	8	175	21	33	14	30	1.93
27811--28277	100	4.7	99	76	11	471	20	34	13	31	1.92
27907--28064	28	5.1	28	66	22	86	21	33	13	31	1.92
27966--28267	36	9.0	35	76	14	218	19	34	13	32	1.91
27907--28095	64	3.0	63	90	3	281	21	34	13	30	1.92
28115--28276	31	5.0	31	77	12	148	18	34	14	32	1.91
27811--28277	131	3.6	128	76	13	404	20	34	13	31	1.92
28268--28393	32	3.9	33	91	3	211	29	34	19	17	1.94
28393--28865	49	9.8	49	79	9	487	25	25	17	31	1.97
28393--28763	92	4.0	92	93	1	636	25	26	17	30	1.97
28668--29054	52	7.1	53	76	14	261	24	24	14	36	1.93
28820--28946	67	1.9	68	86	1	184	23	25	12	38	1.90
28887--29034	53	2.8	52	82	4	172	25	23	16	34	1.95
28668--29161	227	2.2	224	85	5	649	23	24	15	36	1.94
33106--33156	2	25.5	2	100	0	102	49	0	0	50	1.00
33640--33699	22	2.6	22	80	15	59	36	0	1	61	1.06
36279--36573	143	2.1	143	99	0	581	38	6	7	47	1.58
36860--36915	17	3.4	17	70	9	53	25	7	7	60	1.48
41242--41271	2	15.0	2	100	0	60	50	0	50	0	1.00
42656--43376	359	2.0	359	99	0	1433	39	13	19	27	1.89
44481--44512	16	2.0	16	93	0	55	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45247--45289	21	2.0	22	90	4	70	58	0	4	37	1.19
46449--46486	16	2.4	16	86	8	51	44	26	15	13	1.83
46570--46615	25	1.9	23	82	8	56	43	2	4	50	1.34
53616--53691	12	6.9	11	81	15	79	39	0	47	13	1.42
53636--53696	9	7.1	9	74	10	65	42	0	44	13	1.43
53606--53723	42	2.8	42	92	1	184	43	0	44	11	1.45
53618--53705	12	7.9	12	77	15	59	42	0	44	13	1.44
61662--61686	13	1.9	13	100	0	50	36	16	16	32	1.90
61749--61773	13	1.9	13	100	0	50	32	16	16	36	1.90
61782--61962	52	3.5	52	98	0	344	34	19	17	28	1.95
66093--66119	10	2.7	10	100	0	54	0	0	22	77	0.76
75815--75962	1	148.0	1	79	0	125	87	7	3	2	0.73
75823--75958	26	4.9	27	83	13	138	86	7	3	2	0.75
77404--77872	30	15.9	29	77	9	353	29	28	17	24	1.97
77464--77516	27	2.0	27	92	0	88	33	33	16	15	1.90
77400--77841	58	7.5	57	74	10	277	29	28	16	24	1.97
77400--77871	88	5.4	88	79	9	392	29	29	16	24	1.97
77877--77966	43	2.1	43	91	0	144	26	25	17	30	1.98
77920--78057	52	2.6	53	82	3	161	23	25	16	34	1.96
78905--78929	13	1.9	13	100	0	50	36	16	16	32	1.90
78992--79016	13	1.9	13	100	0	50	32	16	16	36	1.90
79025--79205	52	3.5	52	98	0	344	34	19	17	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86802--86860	1	59.0	1	79	0	55	88	10	1	0	0.60
86803--86860	9	6.6	9	84	6	66	87	10	1	0	0.60
86802--86860	20	3.1	18	83	13	73	88	10	1	0	0.60
86802--86860	19	3.0	19	87	5	82	88	10	1	0	0.60
86802--86860	30	2.0	30	86	6	84	88	10	1	0	0.60
87937--88980	61	17.1	62	83	4	1180	25	26	19	29	1.98
87912--88980	62	17.6	61	83	4	1156	25	26	19	28	1.99
87909--88963	123	8.7	123	83	4	1143	25	26	19	28	1.99
89093--89235	42	3.3	41	77	13	126	23	23	9	44	1.82
89916--89967	20	2.6	20	90	0	77	30	17	9	42	1.81
92306--92479	50	3.5	49	86	5	226	25	17	13	42	1.87
92421--92796	79	4.7	79	80	5	330	27	22	14	35	1.93
92421--92796	158	2.4	157	77	8	368	27	22	14	35	1.93
96631--96661	13	2.4	13	94	0	53	35	12	16	35	1.87
96611--96677	33	2.0	33	88	11	102	32	17	13	35	1.89
97292--97366	17	4.1	17	74	24	64	30	30	1	37	1.66
97309--97376	22	3.3	22	73	26	85	26	33	0	39	1.57
97292--97377	39	2.2	39	95	4	156	27	33	1	37	1.65
99129--99157	13	2.2	13	100	0	58	41	17	13	27	1.87
105374--105429	19	2.8	20	81	8	69	37	17	12	32	1.88
105415--105441	13	2.1	13	100	0	54	40	14	14	29	1.86
105396--105460	33	2.0	32	87	3	94	41	16	15	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109155--109367	20	9.7	20	67	19	113	41	12	16	29	1.85
109155--109378	91	2.5	90	89	3	337	41	12	16	28	1.85

Tables:   1

The End!