Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold785
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21409
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:2895 original size:1 final size:1
Alignment explanation
Indices: 2889--2950 Score: 52
Period size: 1 Copynumber: 62.0 Consensus size: 1
2879 ACCTTCTCTT
** * * * * * *
2889 AAAAAAAAAAGCAAAAAAAAAAACAAAAAAAAAACAAAACAAAGAAAAAGAGAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2951 TCTGCTTAAG
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.87, C:0.06, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:2906 original size:12 final size:11
Alignment explanation
Indices: 2889--2927 Score: 60
Period size: 11 Copynumber: 3.4 Consensus size: 11
2879 ACCTTCTCTT
2889 AAAAAAAAAAGC
1 AAAAAAAAAA-C
2901 AAAAAAAAAAAC
1 -AAAAAAAAAAC
2913 AAAAAAAAAAC
1 AAAAAAAAAAC
2924 AAAA
1 AAAA
2928 CAAAGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 15 0.58
12 1 0.04
13 10 0.38
ACGTcount: A:0.90, C:0.08, G:0.03, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:2907 original size:13 final size:12
Alignment explanation
Indices: 2889--2949 Score: 63
Period size: 12 Copynumber: 4.9 Consensus size: 12
2879 ACCTTCTCTT
*
2889 AAAAAAAAAAGC
1 AAAAAAAAAAAC
2901 AAAAAAAAAAAC
1 AAAAAAAAAAAC
2913 -AAAAAAAAAAC
1 AAAAAAAAAAAC
2924 AAAACAAAGAAAA-
1 AAAA-AAA-AAAAC
2937 AGAGAAAAAAAAA
1 A-A-AAAAAAAAA
2950 ATCTGCTTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
11 11 0.26
12 14 0.33
13 8 0.19
14 8 0.19
15 2 0.05
ACGTcount: A:0.87, C:0.07, G:0.07, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:2921 original size:28 final size:28
Alignment explanation
Indices: 2889--2950 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
2879 ACCTTCTCTT
*
2889 AAAAAAA-AAAGCAAAAAAAAAAACAAA
1 AAAAAAACAAAACAAAAAAAAAAACAAA
* * *
2916 AAAAAAACAAAACAAAGAAAAAGAGAAA
1 AAAAAAACAAAACAAAAAAAAAAACAAA
2944 AAAAAAA
1 AAAAAAA
2951 TCTGCTTAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 7 0.23
28 23 0.77
ACGTcount: A:0.87, C:0.06, G:0.06, T:0.00
Consensus pattern (28 bp):
AAAAAAACAAAACAAAAAAAAAAACAAA
Found at i:4012 original size:55 final size:55
Alignment explanation
Indices: 3946--5039 Score: 1438
Period size: 55 Copynumber: 19.6 Consensus size: 55
3936 TGCTTTTTCT
3946 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
*
4001 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
* * * * * *
4056 TTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAAAGCAGGATGCTTTTTCT
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--C----ACC
*
4117 TTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACACC
*
4172 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
* * *
4227 TTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
* * * * * *
4282 TTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCATGATGCTTTTTCT
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--C----ACC
4343 TTTCAAAGCCCACACAAGTTGGTGGCA--TT-CAGTCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
* *
4395 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTTAAAGAGTA-GACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
4449 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
*
4504 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
* * * *
4559 TTTTAAAGCTCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
* * * * * *
4614 TTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCATGATGCTTTTTCT
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--C----ACC
4675 TTTCAAAGCCCACACAAGTTGGTGGCA--TT-CAGTCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
* *
4727 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTTAAAGAGTA-GACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
4781 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
* * * * * *
4836 TTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAACAGGATGCTTTTTTCT
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--C-----ACC
* *
4898 TTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCCCAAAGAGCAGGACACC
1 TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACACC
* *
4953 TCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGCC
1 T-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACACC
*
5008 TTTCAAAGCCCACACGAGTTGGTGGCACTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCA-TTTT
5040 TACTCCTCAA
Statistics
Matches: 933, Mismatches: 68, Indels: 76
0.87 0.06 0.07
Matches are distributed among these distances:
52 56 0.06
54 113 0.12
55 569 0.61
56 4 0.00
57 4 0.00
58 36 0.04
59 5 0.01
60 1 0.00
61 96 0.10
62 46 0.05
63 3 0.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (55 bp):
TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
Found at i:4195 original size:171 final size:165
Alignment explanation
Indices: 3910--5039 Score: 1458
Period size: 171 Copynumber: 6.7 Consensus size: 165
3900 CTTCTCCTTC
**
3910 CATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATT
1 CATTTTTCAGTCCTCAAAGAGCAGGA--C---ACCTTTTCAAAGCCCACACAAGTTGGTGGCATT
3975 TTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCT
61 TT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCT
*
4040 CAAAGAGCAGGACACCTTTTAAAGCCCACACAGGTTGGTGG
125 CAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGG
* ** *
4081 CATTTTTCAGTCCTCAAAAAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
1 CATTTTTCAGTCCTCAAAGAGCAGGA--C---ACCTTTTCAAAGCCCACACAAGTTGGTGGCA-T
4146 TTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCT
60 TTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCT
*
4211 CAAAGAGCAGGACACCTTTTAAAGCCCACACAGGTTGGTGG
125 CAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGG
*
4252 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTT-AAAGCCCACACAGGTTGGTGGCATTTTTCA
1 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCA
* * * *
4316 GTCCTCAAAGAGCATGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA--TT-CAGTCC
65 GTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCC
*
4378 TCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGG
124 TCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGG
* * *
4420 CATTTTCCAGTCCTTAAAGAGTA-GACACC-TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCA
1 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CA
4483 GTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAG
65 GTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAG
* *
4548 AGCAGGACACCTTTTAAAGCTCACACAGGTTGGTGG
130 AGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGG
*
4584 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTT-AAAGCCCACACAGGTTGGTGGCATTTTTCA
1 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCA
* * * *
4648 GTCCTCAAAGAGCATGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA--TT-CAGTCC
65 GTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCC
*
4710 TCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGG
124 TCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGG
* * *
4752 CATTTTCCAGTCCTTAAAGAGTA-GACACC-TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCA
1 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CA
* * * *
4815 GTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAG
65 GTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAG
* **
4880 AACAGGATGCTTTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
130 AGCAGGA--C----ACCTTTT-AAAGCCCACACAAGTTGGTGG
** * * *
4923 CACCTTTCAGTCCCCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTCA
1 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCA
* *
4987 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTT
65 GTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTT
5040 TACTCCTCAA
Statistics
Matches: 861, Mismatches: 61, Indels: 72
0.87 0.06 0.07
Matches are distributed among these distances:
161 54 0.06
163 4 0.00
164 82 0.10
165 91 0.11
166 27 0.03
167 94 0.11
168 129 0.15
169 5 0.01
170 4 0.00
171 284 0.33
172 78 0.09
173 9 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (165 bp):
CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAG
TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGA
GCAGGACACCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:4257 original size:27 final size:27
Alignment explanation
Indices: 4227--4312 Score: 64
Period size: 27 Copynumber: 3.1 Consensus size: 27
4217 GCAGGACACC
4227 TTTTAAAGCCCACACAGGTTGGTGGCA
1 TTTTAAAGCCCACACAGGTTGGTGGCA
** * * * ** *** *
4254 TTTTTCAGTCCTCAAAGAGCAGGACACC
1 TTTTAAAGCCCACACAG-GTTGGTGGCA
4282 TTTTAAAGCCCACACAGGTTGGTGGCA
1 TTTTAAAGCCCACACAGGTTGGTGGCA
4309 TTTT
1 TTTT
4313 TCAGTCCTCA
Statistics
Matches: 36, Mismatches: 22, Indels: 2
0.60 0.37 0.03
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (27 bp):
TTTTAAAGCCCACACAGGTTGGTGGCA
Found at i:4526 original size:332 final size:332
Alignment explanation
Indices: 3910--5000 Score: 1620
Period size: 332 Copynumber: 3.2 Consensus size: 332
3900 CTTCTCCTTC
**
3910 CATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATT
1 CATTTTTCAGTCCTCAAAGAGCAGGA--C---ACCTTTT-AAAGCCCACACAAGTTGGTGGCATT
* * * *
3975 TTCCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
60 TTTCAGTCCTCAAAGAGCATGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA--TT-C
* * * * *
4034 AATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAA
122 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTTAAA
* * * * *
4099 AAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAG
187 GAGTA-GA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAG
4163 CAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCT
244 CAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCT
4228 TTTAAAGCCCACACAGGTTGGTGG
309 TTTAAAGCCCACACAGGTTGGTGG
*
4252 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAG
1 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAG
4317 TCCTCAAAGAGCATGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTCAGTCCTCAA
66 TCCTCAAAGAGCATGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTCAGTCCTCAA
4382 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTTAAAGAGTAGACA
131 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTTAAAGAGTAGACA
4447 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAG
196 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAG
*
4512 CCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCTCACACAGG
261 CCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAGG
4577 TTGGTGG
326 TTGGTGG
*
4584 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAG
1 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAG
4649 TCCTCAAAGAGCATGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTCAGTCCTCAA
66 TCCTCAAAGAGCATGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTCAGTCCTCAA
4714 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTTAAAGAGTAGACA
131 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTTAAAGAGTAGACA
*
4779 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAG
196 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAG
* * * * **
4844 CCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAACAGGATGCTTTTTTCTTTTCAAAGCCC
261 CCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGA--C----ACCTTTT-AAAGCCC
*
4909 ACACAAGTTGGTGG
319 ACACAGGTTGGTGG
** * * **
4923 CACCTTTCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAG
1 CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAG
4988 TCCTCAAAGAGCA
66 TCCTCAAAGAGCA
5001 GGACGCCTTT
Statistics
Matches: 701, Mismatches: 34, Indels: 31
0.92 0.04 0.04
Matches are distributed among these distances:
331 3 0.00
332 428 0.61
334 1 0.00
336 45 0.06
337 5 0.01
338 8 0.01
339 154 0.22
340 3 0.00
342 54 0.08
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (332 bp):
CATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAG
TCCTCAAAGAGCATGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTCAGTCCTCAA
AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTTAAAGAGTAGACA
CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAG
CCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAGG
TTGGTGG
Found at i:4527 original size:277 final size:275
Alignment explanation
Indices: 3946--5039 Score: 1546
Period size: 277 Copynumber: 3.9 Consensus size: 275
3936 TGCTTTTTCT
*
3946 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCC
* * * *
4011 CACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAGGTT
66 CACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTT
* * *
4076 GGTGGCATTTTTCAGTCCTCAAAAAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTG
131 GGTGGCA--TTTCAGTCCTCAAAGAGCAGGA-GC---TACCTTTCAAAGCCCACACAAGTTGGTG
4141 GCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCA
190 GCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCA
*
4206 ATCCTCAAAGAGCAGGACACC
255 GTCCTCAAAGAGCAGGACACC
* * *
4227 TTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCC
* **
4292 CACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCATGATGCTTTTTCTTTTCAAAGCCCACA
66 CACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGA--C---ACCTTTT-AAAGCCCACA
4357 CAAGTTGGTGGCA-TTCAGTCCTCAAAGAGCAGGA-C-ACCTTTCAAAGCCCACACAAGTTGGTG
125 CAAGTTGGTGGCATTTCAGTCCTCAAAGAGCAGGAGCTACCTTTCAAAGCCCACACAAGTTGGTG
* * *
4419 GCA-TTTTCCAGTCCTTAAAGAGTA-GACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
190 GCACCTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
4482 AGTCCTCAAAGAGCAGGACACC
254 AGTCCTCAAAGAGCAGGACACC
* *
4504 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCT
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCC
*
4569 CACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAGGTT
66 CACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTT
* * *
4634 GGTGGCATTTTTCAGTCCTCAAAGAGCATGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTG
131 GGTGGCA--TTTCAGTCCTCAAAGAGCAGGA-GC---TACCTTTCAAAGCCCACACAAGTTGGTG
4699 GCA---TTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCA
190 GCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCA
* *
4761 GTCCTTAAAGAGTA-GACACC
255 GTCCTCAAAGAGCAGGACACC
4781 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCC
* **
4846 CACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAACAGGATGCTTTTTTCTTTTCAAAGCCCAC
66 CACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGA--C----ACCTTTT-AAAGCCCAC
*
4911 ACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGA-C-ACCTCTT-AAAGCCCACACAAGTT
124 ACAAGTTGGTGGCA--TTTCAGTCCTCAAAGAGCAGGAGCTACCT-TTCAAAGCCCACACAAGTT
* *
4973 GGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTT
186 GGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TT
5038 TT
250 TT
5040 TACTCCTCAA
Statistics
Matches: 736, Mismatches: 48, Indels: 57
0.88 0.06 0.07
Matches are distributed among these distances:
271 22 0.03
272 5 0.01
274 20 0.03
275 1 0.00
276 1 0.00
277 286 0.39
278 121 0.16
279 3 0.00
280 28 0.04
281 148 0.20
282 6 0.01
283 6 0.01
284 62 0.08
286 5 0.01
287 22 0.03
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (275 bp):
TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCC
CACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTT
GGTGGCATTTCAGTCCTCAAAGAGCAGGAGCTACCTTTCAAAGCCCACACAAGTTGGTGGCACCT
TTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTC
AAAGAGCAGGACACC
Found at i:4982 original size:29 final size:28
Alignment explanation
Indices: 4902--4984 Score: 75
Period size: 27 Copynumber: 3.0 Consensus size: 28
4892 TTTTCTTTTC
4902 AAAGCCCACACAAGTTGGTGGCACCTTT
1 AAAGCCCACACAAGTTGGTGGCACCTTT
* * **
4930 -CAGTCCC-CA-AAG-AGCAGGACACCTCTT
1 AAAG-CCCACACAAGTTGGTGG-CACCT-TT
4957 AAAGCCCACACAAGTTGGTGGCACCTTT
1 AAAGCCCACACAAGTTGGTGGCACCTTT
4985 CAGTCCTCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
25 3 0.08
26 8 0.20
27 9 0.22
28 9 0.22
29 8 0.20
30 3 0.08
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.19
Consensus pattern (28 bp):
AAAGCCCACACAAGTTGGTGGCACCTTT
Found at i:4987 original size:117 final size:117
Alignment explanation
Indices: 4781--5038 Score: 370
Period size: 117 Copynumber: 2.3 Consensus size: 117
4771 AGTAGACACC
* * *
4781 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCC
* **
4846 CACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAACAGGATGCTTTTTTCT
66 CACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAACAGGATGCTTTTTTCT
4898 TTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCCCAAAGAGCAGGACACCTCTTAAAGC
1 TTTCAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCCCAAAGAGCAGGACACCTCTTAAAGC
* *
4962 CCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGC------C-
65 CCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAACAGGATGCTTTTTTCT
*
5008 TTTCAAAGCCCACACGAGTTGGTGGCACTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACTTT
5039 TTACTCCTCA
Statistics
Matches: 131, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
109 4 0.03
110 26 0.20
111 1 0.01
117 97 0.74
118 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (117 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCC
CACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAACAGGATGCTTTTTTCT
Found at i:5850 original size:19 final size:19
Alignment explanation
Indices: 5826--5893 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
5816 AATTCAACGA
5826 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
5845 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
5860 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
5877 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
5894 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:5864 original size:32 final size:32
Alignment explanation
Indices: 5828--5890 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
5818 TTCAACGATT
*
5828 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
5860 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
5891 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:5865 original size:13 final size:13
Alignment explanation
Indices: 5847--5871 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5837 ACATAAGTTT
5847 TGTATCGATACAA
1 TGTATCGATACAA
5860 TGTATCGATACA
1 TGTATCGATACA
5872 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:5951 original size:13 final size:13
Alignment explanation
Indices: 5933--5958 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5923 CATTTTTCTG
5933 TGTATCGATACAT
1 TGTATCGATACAT
5946 TGTATCGATACAT
1 TGTATCGATACAT
5959 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5955 original size:33 final size:33
Alignment explanation
Indices: 5913--5979 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
5903 GCCAAGGAAA
***
5913 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
5946 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
5979 T
1 T
5980 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:8377 original size:51 final size:53
Alignment explanation
Indices: 8308--8649 Score: 214
Period size: 52 Copynumber: 6.5 Consensus size: 53
8298 AGTTTATCAA
* * * * *
8308 TTCTCCACAATCGAGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
* *
8359 TT-TTCTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
* * * *** * *
8413 TTCTTCACAATCGGGGATACTCCAAC-CCCA-TTAATCATCGGGGATACTCCAACCCCGT
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTAT-TTC-CAAAAACACCAA-----T
* * *
8471 TAT-TTC-CGA--GGGGATACTCCAACTCCGATTTTA--TCGCTAAAACACTAAT
1 T-TCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAAT
* * *
8520 TT-TTCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTC-AAAACGCCAATT
1 TTCTT-CACAATCGGGGATACTCCAACTCC-GATTTTATTTCCAAAAACACCAA-T
* *
8573 TTCCTT--TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAAT
1 TT-CTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
*
8625 TT-TTCACAATCGAGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
8650 CTCGTTATTT
Statistics
Matches: 224, Mismatches: 38, Indels: 57
0.70 0.12 0.18
Matches are distributed among these distances:
48 3 0.01
49 3 0.01
50 6 0.03
51 35 0.16
52 78 0.35
53 36 0.16
54 30 0.13
55 19 0.08
56 3 0.01
57 5 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:8492 original size:28 final size:27
Alignment explanation
Indices: 8425--8493 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
8415 CTTCACAATC
**
8425 GGGGATACTCCAACCCCATTAATCATC
1 GGGGATACTCCAACCCCATTAATCAGA
* * *
8452 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCATTA-ATCAGA
8480 GGGGATACTCCAAC
1 GGGGATACTCCAAC
8494 TCCGATTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (27 bp):
GGGGATACTCCAACCCCATTAATCAGA
Found at i:8633 original size:104 final size:103
Alignment explanation
Indices: 8313--8648 Score: 306
Period size: 104 Copynumber: 3.2 Consensus size: 103
8303 ATCAATTCTC
* * *
8313 CACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTT-CTATAATCGGGGAT
1 CACAATCGAGGATACTCCAA-TCCGATTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
*
8377 ACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTT
65 ACTCCAACTCCGATTTTATTTCC-AAAAACACCAATTT-TT
* * * * ** * * * ** * *
8418 CACAATCGGGGATACTCCAACCCCA-TTAATCATCGGGGATACTCCAA--CCCCGTTATTTCCGA
1 CACAATCGAGGATACTCCAATCCGATTTTATTTTC---AAAACACCAATTTTCCTTTA-AT-C--
* *
8480 GGGGATACTCCAACTCCGATTTTA--TCGCTAAAACACTAATTTTT
59 GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAATTTTT
* * *
8524 CCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGA
1 -CACAATCGAGGATACTCCAATCC-GATTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGA
*
8589 TACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
64 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
8629 CACAATCGAGGATACTCCAA
1 CACAATCGAGGATACTCCAA
8649 CCTCGTTATT
Statistics
Matches: 179, Mismatches: 36, Indels: 33
0.72 0.15 0.13
Matches are distributed among these distances:
103 6 0.03
104 46 0.26
105 35 0.20
106 19 0.11
107 38 0.21
108 6 0.03
109 29 0.16
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.32
Consensus pattern (103 bp):
CACAATCGAGGATACTCCAATCCGATTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
Found at i:8669 original size:28 final size:28
Alignment explanation
Indices: 8633--8709 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
8623 ATTTTTCACA
* * *
8633 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
8661 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
8689 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
8710 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:8678 original size:212 final size:212
Alignment explanation
Indices: 8311--8705 Score: 625
Period size: 212 Copynumber: 1.9 Consensus size: 212
8301 TTATCAATTC
* *
8311 TCCACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* *
8376 TACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
*
8441 CATTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCGATTTTATC
131 CATTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACTCCGATTTTATC
8506 GCTAAAACACTAATTTT
196 GCTAAAACACTAATTTT
* * * *
8523 TCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGAGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
*
8587 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* * *
8650 CTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAAC
129 CCCATTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAAC
8706 CCCGGCTTTA
Statistics
Matches: 167, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
211 30 0.18
212 102 0.61
213 35 0.21
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (212 bp):
TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CATTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACTCCGATTTTATC
GCTAAAACACTAATTTT
Found at i:8775 original size:106 final size:107
Alignment explanation
Indices: 8371--8782 Score: 304
Period size: 107 Copynumber: 3.9 Consensus size: 107
8361 TTCTATAATC
* * * * *
8371 GGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACCCCGACTTTATTTCC-AAAAATACCAATTTC-TCACAATCGAGGATACTCC
* * * *
8436 AACCCCATTAATCATCGGGGATACTCCAACCCCGTTATTTCCGA
64 AACCCCGTTATTTATCGGGGATACTCCAACCCCGTTACTTCCGA
* * * * * * *
8480 GGGGATACTCCAACTCCGA-TTT-TATCGCTAAAACACTAATTTTTCCACAATCGGGGATACTCC
1 GGGGATACTCCAACCCCGACTTTATTTC-CAAAAATACCAATTTCT-CACAATCGAGGATACTCC
* * * ***** * * ** * *
8543 AATCCTGGT-TTTATTTTCAAAACGCCAATTTTCCTTTA-AT-C--
64 AACCCCGTTATTTATCGGGGATACTCCAA--CCCCGTTACTTCCGA
* * *
8584 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
*
8649 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
66 CCCCGTTATTT-ATCGGGGATACTCCAACCCCGTTACTTCCGA
* * *** * *
8692 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTG-GGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
8755 CCCCGTTATTT-TCGAAGGGATACTCCAA
66 CCCCGTTATTTATCG--GGGATACTCCAA
8783 TCCTGATTTT
Statistics
Matches: 236, Mismatches: 53, Indels: 31
0.74 0.17 0.10
Matches are distributed among these distances:
104 49 0.21
105 21 0.09
106 58 0.25
107 60 0.25
108 30 0.13
109 18 0.08
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
CCCCGTTATTTATCGGGGATACTCCAACCCCGTTACTTCCGA
Found at i:8825 original size:78 final size:77
Alignment explanation
Indices: 8663--8865 Score: 212
Period size: 78 Copynumber: 2.6 Consensus size: 77
8653 GTTATTTCAT
* * * * *
8663 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAA-CCCTGATTTATTCCCAAAATAT
* *
8728 TGATTTCTCATAA
65 CGATTTCTCACAA
** * * ** *
8741 TTGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAATCCTGATTTTTTTTC-TAATCAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCTGATTTATTCCCAAAAT-AT
8805 CGATTTCTCACAA
65 CGATTTCTCACAA
* *
8818 CCGGGGATACTCCAGCCCCGTTATTTTC-AAGGGAACACTCCAACCCTG
1 -CGGGGATACTCCAACCCCGTTATTTTCGAAGGG-ATACTCCAACCCTG
8866 TTATTATCTC
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
76 3 0.03
77 27 0.26
78 73 0.71
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (77 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCTGATTTATTCCCAAAATATC
GATTTCTCACAA
Found at i:11344 original size:170 final size:170
Alignment explanation
Indices: 11149--11472 Score: 456
Period size: 170 Copynumber: 1.9 Consensus size: 170
11139 GAAGTAGGCA
* * * *
11149 TTCTATGTTAAGTCCACCCTAGTTGGTTAGGTGAAAGACTAGTAGAGTCAATAGTTTAGTTGCCT
1 TTCTATGTTAAGTCCACCCTAGTTGGTTAGGTAAAAGACCAATAGAGTCAACAGTTTAGTTGCCT
11214 ATTAAGTCCT-TTTCATTTGGTTATGTGGAACAT-TAGTGAAGTAGGCATGTTAGTTCGCTTTAG
66 ATTAAGT-CTATTTCATTTGGTTATGTGGAACATCTA-TGAAGTAGGCATGTTAGTTCGCTTTAG
* *
11277 CTGGTTAA-ATAGAAGACTAGTAAAGTCATCAACTTTTTAATT
129 CTGGTTAAGA-AAAAGACCAGTAAAGTCATCAACTTTTTAATT
* ** * *
11319 TTCTATTTTAAGTCCACTTTAGTTGGTTAGGTAAAAGACCAATAGAGTTAGCAGTTTAGTTGCCT
1 TTCTATGTTAAGTCCACCCTAGTTGGTTAGGTAAAAGACCAATAGAGTCAACAGTTTAGTTGCCT
* * * * *
11384 GTTAAGTCTATTTTATTTGGTTATGTGGAAGATCTATGAAGTAGGCATGTTTGTTCGCTTTAGTT
66 ATTAAGTCTATTTCATTTGGTTATGTGGAACATCTATGAAGTAGGCATGTTAGTTCGCTTTAGCT
11449 GGTTAAGAAAAAGACCAGTAAAGT
131 GGTTAAGAAAAAGACCAGTAAAGT
11473 TGATGCCTTT
Statistics
Matches: 135, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
169 2 0.01
170 130 0.96
171 3 0.02
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (170 bp):
TTCTATGTTAAGTCCACCCTAGTTGGTTAGGTAAAAGACCAATAGAGTCAACAGTTTAGTTGCCT
ATTAAGTCTATTTCATTTGGTTATGTGGAACATCTATGAAGTAGGCATGTTAGTTCGCTTTAGCT
GGTTAAGAAAAAGACCAGTAAAGTCATCAACTTTTTAATT
Found at i:11520 original size:170 final size:169
Alignment explanation
Indices: 11149--11520 Score: 428
Period size: 170 Copynumber: 2.2 Consensus size: 169
11139 GAAGTAGGCA
* * * * * * * *
11149 TTCTATGTTAAGTCCACCCTAGTTGGTTAGGTGAAAGACTAGTAGAGTCAATAGTTTAGTTGCCT
1 TTCTATCTTAAGCCCACTCTAGTTAGTTAGGTAAAAGACCAATAGAGTCAACAGTTTAGTTGCCT
11214 ATTAAGTCCTTTTCATTTGGTTATGTGGAACATTAGTGAAGTAGGCATGTTAGTTCGCTTTAGCT
66 ATTAAGTCCTTTTCATTTGGTTATGTGGAACATTAGTGAAGTAGGCATGTTAGTTCGCTTTAGCT
* *
11279 GGTTAAATAGAAGACTAGTAAAGTCATCAACTTTTTAATT
131 GGTTAAATAAAAGACCAGTAAAGTCATC-ACTTTTTAATT
* * * * * *
11319 TTCTATTTTAAGTCCACTTTAGTTGGTTAGGTAAAAGACCAATAGAGTTAGCAGTTTAGTTGCCT
1 TTCTATCTTAAGCCCACTCTAGTTAGTTAGGTAAAAGACCAATAGAGTCAACAGTTTAGTTGCCT
* * * *
11384 GTTAAGT-CTATTTTATTTGGTTATGTGGAAGATCTA-TGAAGTAGGCATGTTTGTTCGCTTTAG
66 ATTAAGTCCT-TTTCATTTGGTTATGTGGAACAT-TAGTGAAGTAGGCATGTTAGTTCGCTTTAG
* *
11447 TTGGTTAAGA-AAAAGACCAGTAAAGTTGATGC-CTTTTTAATT
129 CTGGTTAA-ATAAAAGACCAGTAAAG-TCAT-CACTTTTTAATT
* * * *
11489 TTTTCTCTTATGCCCACTCTATTTAGTTAGGT
1 TTCTATCTTAAGCCCACTCTAGTTAGTTAGGT
11521 GGAAAATGGT
Statistics
Matches: 172, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
169 2 0.01
170 163 0.95
171 6 0.03
172 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.40
Consensus pattern (169 bp):
TTCTATCTTAAGCCCACTCTAGTTAGTTAGGTAAAAGACCAATAGAGTCAACAGTTTAGTTGCCT
ATTAAGTCCTTTTCATTTGGTTATGTGGAACATTAGTGAAGTAGGCATGTTAGTTCGCTTTAGCT
GGTTAAATAAAAGACCAGTAAAGTCATCACTTTTTAATT
Found at i:12843 original size:9 final size:9
Alignment explanation
Indices: 12831--12855 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
12821 TATATACTTT
12831 ATATTTTAG
1 ATATTTTAG
12840 ATATTTTAG
1 ATATTTTAG
12849 ATATTTT
1 ATATTTT
12856 CTTAGATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (9 bp):
ATATTTTAG
Found at i:18497 original size:28 final size:27
Alignment explanation
Indices: 18466--18537 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 27
18456 ATTGAAAATA
* *
18466 GGGTTGGAGTATTCCCTCAGAAATGATG
1 GGGTTGGAGTA-TCCCTCAGAAATAAAG
*
18494 GGGTTGGAGTATCCCTTCATAAATAAAG
1 GGGTTGGAGTATCCC-TCAGAAATAAAG
18522 GGGTTGGAGTATCCCT
1 GGGTTGGAGTATCCCT
18538 GAGATGAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 5 0.12
28 35 0.88
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (27 bp):
GGGTTGGAGTATCCCTCAGAAATAAAG
Found at i:18553 original size:107 final size:107
Alignment explanation
Indices: 18415--18615 Score: 280
Period size: 107 Copynumber: 1.9 Consensus size: 107
18405 GTAAAAGTCC
* * * * *
18415 GGGTTAGAGTATTCCGAGATGAAAAAATTTAATATTTTGTAATTGAAAATAG-GGTTGGAGTATT
1 GGGTTAGAGTATCCCGAGATGAAAAAATTTAATATTTTGGAAATAAAAAT-GCGGTTGGAGTATC
* * *
18479 CCCTCAGAAATGATGGGGTTGGAGTATCCCTTCATAAATAAAG
65 CCCTCAGAAATAACGGGGTTGAAGTATCCCTTCATAAATAAAG
* *
18522 GGGTTGGAGTATCCCTGAGATG-AAAATTTTAATATTTTGGAAATAAAAATGCGGTTGGAGTATC
1 GGGTTAGAGTATCCC-GAGATGAAAAAATTTAATATTTTGGAAATAAAAATGCGGTTGGAGTATC
18586 CCCTCAGAAATAACGGGGTTGAAGTATCCC
65 CCCTCAGAAATAACGGGGTTGAAGTATCCC
18616 CGTGATGAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
106 1 0.01
107 75 0.91
108 6 0.07
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.30
Consensus pattern (107 bp):
GGGTTAGAGTATCCCGAGATGAAAAAATTTAATATTTTGGAAATAAAAATGCGGTTGGAGTATCC
CCTCAGAAATAACGGGGTTGAAGTATCCCTTCATAAATAAAG
Found at i:18583 original size:79 final size:77
Alignment explanation
Indices: 18495--18745 Score: 324
Period size: 79 Copynumber: 3.2 Consensus size: 77
18485 GAAATGATGG
*
18495 GGTTGGAGTATCCCTTCATAAATAAAGGGGTTGGAGTATCCCTGAGATGAAAATTTTAATATTTT
1 GGTTGGAGTATCCC-TCA-AAATAAAGGGGTTGGAGTATCCCCGAGATGAAAATTTTAATATTTT
*
18560 GGAAATAAAAATGC
64 GGAAATAAAAATGA
* * * *
18574 GGTTGGAGTATCCCCTCAGAAATAACGGGGTTGAAGTATCCCCGTGATGAAAATTTAAATATTTT
1 GGTTGGAGTAT-CCCTCA-AAATAAAGGGGTTGGAGTATCCCCGAGATGAAAATTTTAATATTTT
*
18639 GGAAATAAAAATGG
64 GGAAATAAAAATGA
* *
18653 GGTTGGAGTATTCCCTCGAAAATAACA-GGATTGGAGTATCCCCGAGATGAAAATTTTAATTTTT
1 GGTTGGAGTA-TCCCTC-AAAATAA-AGGGGTTGGAGTATCCCCGAGATGAAAATTTTAATATTT
* *
18717 TAGAAATAAAAACGA
63 TGGAAATAAAAATGA
*
18732 GGTTAGAGTATCCC
1 GGTTGGAGTATCCC
18746 CGATAGTGAA
Statistics
Matches: 151, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.03
79 142 0.94
80 5 0.03
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.29
Consensus pattern (77 bp):
GGTTGGAGTATCCCTCAAAATAAAGGGGTTGGAGTATCCCCGAGATGAAAATTTTAATATTTTGG
AAATAAAAATGA
Found at i:18784 original size:53 final size:51
Alignment explanation
Indices: 18686--18795 Score: 157
Period size: 53 Copynumber: 2.1 Consensus size: 51
18676 AACAGGATTG
* **
18686 GAGTATCCCCGAGATGAAAATTTTAATTTTTTAGAAATAAAAACGAGGTTA
1 GAGTATCCCCGAGATGAAAATTTTAATATAATAGAAATAAAAACGAGGTTA
* *
18737 GAGTATCCCCGATAGTGAAAATTTTGATATAATAGCAAATAAAAACGAGGTTA
1 GAGTATCCCCGAGA-TGAAAATTTTAATATAATAG-AAATAAAAACGAGGTTA
18790 GAGTAT
1 GAGTAT
18796 TCCATAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
51 13 0.25
52 16 0.31
53 23 0.44
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (51 bp):
GAGTATCCCCGAGATGAAAATTTTAATATAATAGAAATAAAAACGAGGTTA
Found at i:18794 original size:132 final size:130
Alignment explanation
Indices: 18641--19011 Score: 402
Period size: 132 Copynumber: 2.8 Consensus size: 130
18631 AATATTTTGG
* * * *
18641 AAATAAAAATGGGGTTGGAGTATTCCCTCGAAAATAACAGGATTGGAGTATCCCCGAGATGAAAA
1 AAATAAAAA-GAGGTTGGAGTATTCCCT-AAAAATAACGGGGTTGGAGTATCCCCGAGATGAAAA
* * * *
18706 TTTTAATTTTTTAGAAATAAAAACGAGGTTAGAGTATCCCCGATAGTGAAAATTTTGATATAATA
64 TTTTAATATTTTAGAAATAAAAATGGGGTTAGAGTATCCCCGATAGTGAAAAATTTGATATAATA
18771 GC
129 GC
* * * **
18773 AAATAAAAACGAGGTTAGAGTATTCCATAAAAAATAACGGGGTTGGAGTATCCTCGAGACAAAAA
1 AAATAAAAA-GAGGTTGGAGTATTCCCT-AAAAATAACGGGGTTGGAGTATCCCCGAGATGAAAA
** * *
18838 AATTAATATTTTAGAAATAAAAATGGGGTT-GAAGTATCCCCGATGGTGAAAAATTTGATATTAT
64 TTTTAATATTTTAGAAATAAAAATGGGGTTAG-AGTATCCCCGATAGTGAAAAATTTGATATAAT
*
18902 AGG
128 AGC
* * * * * * *
18905 AAGTAAAAATAGGGTTGGAGTATCCCCTTAGAAATGATGGGGTTGGAGTATCCCCGATAGTGAAA
1 AAATAAAAAGA-GGTTGGAGTATTCCC-TAAAAATAACGGGGTTGGAGTATCCCCGAGA-TGAAA
* * **
18970 ATTTTGATATTTTGGAAGCAAAAATGGGGTTAGAGTATCCCC
63 ATTTTAATATTTTAGAAATAAAAATGGGGTTAGAGTATCCCC
19012 TCGAAAATGA
Statistics
Matches: 196, Mismatches: 38, Indels: 9
0.81 0.16 0.04
Matches are distributed among these distances:
131 2 0.01
132 155 0.79
133 38 0.19
134 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.28
Consensus pattern (130 bp):
AAATAAAAAGAGGTTGGAGTATTCCCTAAAAATAACGGGGTTGGAGTATCCCCGAGATGAAAATT
TTAATATTTTAGAAATAAAAATGGGGTTAGAGTATCCCCGATAGTGAAAAATTTGATATAATAGC
Found at i:18868 original size:51 final size:53
Alignment explanation
Indices: 18811--18931 Score: 138
Period size: 53 Copynumber: 2.3 Consensus size: 53
18801 AAAAAATAAC
* *
18811 GGGGTTGGAGTATCCTCGA-GACAAAAAAATTAATATTTTA-GAAATAAAAAT
1 GGGGTTGGAGTATCCCCGATGACAAAAAAATTAATATTATAGGAAATAAAAAT
* *** * * *
18862 GGGGTTGAAGTATCCCCGATGGTGAAAAATTTGATATTATAGGAAGTAAAAAT
1 GGGGTTGGAGTATCCCCGATGACAAAAAAATTAATATTATAGGAAATAAAAAT
*
18915 AGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
18932 TTAGAAATGA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
51 17 0.30
52 15 0.26
53 25 0.44
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (53 bp):
GGGGTTGGAGTATCCCCGATGACAAAAAAATTAATATTATAGGAAATAAAAAT
Found at i:18955 original size:81 final size:80
Alignment explanation
Indices: 18860--19012 Score: 234
Period size: 81 Copynumber: 1.9 Consensus size: 80
18850 AGAAATAAAA
* * *
18860 ATGGGGTTGAAGTATCCCCGATGGTGAAAAATTTGATATTATAGGAAGTAAAAATAGGGTTGGAG
1 ATGGGGTTGAAGTATCCCCGATAGTGAAAAATTTGATATT-TAGGAAGCAAAAATAGGGTTAGAG
18925 TATCCCCTTAGAAATG
65 TATCCCCTTAGAAATG
* * * *
18941 ATGGGGTTGGAGTATCCCCGATAGTGAAAATTTTGATATTTTGGAAGCAAAAATGGGGTTAGAGT
1 ATGGGGTTGAAGTATCCCCGATAGTGAAAAATTTGATATTTAGGAAGCAAAAATAGGGTTAGAGT
19006 ATCCCCT
66 ATCCCCT
19013 CGAAAATGAC
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 28 0.43
81 37 0.57
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.29
Consensus pattern (80 bp):
ATGGGGTTGAAGTATCCCCGATAGTGAAAAATTTGATATTTAGGAAGCAAAAATAGGGTTAGAGT
ATCCCCTTAGAAATG
Found at i:19020 original size:80 final size:81
Alignment explanation
Indices: 18860--19053 Score: 234
Period size: 80 Copynumber: 2.4 Consensus size: 81
18850 AGAAATAAAA
* * * * *
18860 ATGGGGTTGAAGTATCCCCGATGGTGAAAAATTTGATATTATAGGAAGTAAAAATAGGGTTGGAG
1 ATGGGGTTGGAGTATCCCCGATAGTGAAAATTTTGATATTATAGGAAGCAAAAATAGGGTTAGAG
*
18925 TATCCCCTTAGAAATG
66 TATCCCCTGAGAAATG
* *
18941 ATGGGGTTGGAGTATCCCCGATAGTGAAAATTTTGATATT-TTGGAAGCAAAAATGGGGTTAGAG
1 ATGGGGTTGGAGTATCCCCGATAGTGAAAATTTTGATATTATAGGAAGCAAAAATAGGGTTAGAG
19005 TATCCCCTCGA-AAATG
66 TATCCCCT-GAGAAATG
** * *
19021 ACAGGGTTGGAGCATCCTC-A-AGGTGAAAATTTT
1 ATGGGGTTGGAGTATCCCCGATA-GTGAAAATTTT
19054 TACGTTTTGA
Statistics
Matches: 99, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
78 1 0.01
79 12 0.12
80 48 0.48
81 38 0.38
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.28
Consensus pattern (81 bp):
ATGGGGTTGGAGTATCCCCGATAGTGAAAATTTTGATATTATAGGAAGCAAAAATAGGGTTAGAG
TATCCCCTGAGAAATG
Found at i:19830 original size:32 final size:32
Alignment explanation
Indices: 19794--20142 Score: 689
Period size: 32 Copynumber: 10.9 Consensus size: 32
19784 GTCAACGATT
*
19794 TGTATCGATATATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
19826 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
19858 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
19890 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
19922 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
19954 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
19986 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
20018 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
20050 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
20082 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
20114 TGTATCGATACATAAGTGTTGTATCGATA
1 TGTATCGATACATAAGTGTTGTATCGATA
20143 GATAAGAAGC
Statistics
Matches: 316, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 316 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:20206 original size:13 final size:13
Alignment explanation
Indices: 20188--20212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20178 ATTACTCAAA
20188 TGTATCGATACAT
1 TGTATCGATACAT
20201 TGTATCGATACA
1 TGTATCGATACA
20213 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:20265 original size:52 final size:52
Alignment explanation
Indices: 20221--20346 Score: 243
Period size: 52 Copynumber: 2.4 Consensus size: 52
20211 CACTGATCTT
20221 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
20273 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
20325 TGTTTCGATACATGCAGGCAAA
1 TGTATCGATACATGCAGGCAAA
20347 ATTTCATATT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Done.