Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold786
Parameters: 2 7 7 80 10 50 1000
Length:  60707

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2822--2846
2
12.5
2
100
0
50
52
0
0
48
1.00
3664--3712
25
2.0
25
84
8
64
51
2
2
44
1.24
3979--4037
23
2.6
24
87
12
81
61
1
0
37
1.07
4472--4500
11
2.5
12
88
11
51
62
0
0
37
0.96
4989--5037
20
2.5
20
82
0
62
36
4
48
10
1.56
5113--5181
28
2.6
27
80
15
72
44
23
7
24
1.78
7065--7110
21
2.1
22
84
4
58
19
30
19
30
1.97
7299--7392
21
4.5
21
91
2
136
32
12
18
36
1.88
7485--7549
33
2.0
33
87
0
94
27
15
13
43
1.85
9885--10226
52
6.5
53
71
15
210
30
26
11
32
1.92
9999--10074
27
2.8
28
85
2
100
26
34
18
21
1.96
10210--10286
28
2.7
30
86
7
108
23
31
19
25
1.98
9888--10283
212
1.9
212
90
5
640
29
26
12
31
1.93
13846--13894
20
2.5
20
82
0
62
36
4
48
10
1.56
15805--15835
4
7.8
4
92
0
53
54
19
0
25
1.44
16864--16906
19
2.3
18
76
4
50
25
23
11
39
1.88
21219--21243
12
2.1
12
100
0
50
56
0
0
44
0.99
22012--22050
18
2.2
18
90
4
62
51
23
15
10
1.73
23861--23903
21
2.0
21
100
0
86
48
23
18
9
1.76
24226--24251
13
2.0
13
100
0
52
38
30
7
23
1.83
24407--24468
22
2.9
22
85
9
83
29
1
0
69
0.98
24431--24476
15
2.9
16
78
12
51
26
0
0
73
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24408--24476
22
3.2
22
78
19
74
28
1
0
69
0.97
25554--25582
14
2.1
14
93
6
51
41
24
3
31
1.71
33263--33295
16
2.1
16
94
0
57
0
9
6
84
0.76
35986--36054
13
5.1
14
68
16
56
42
2
0
55
1.15
35986--36049
26
2.4
26
75
12
67
40
3
0
56
1.15
36062--36114
25
2.1
26
89
10
83
62
0
0
37
0.96
36031--36115
22
3.9
22
77
7
75
57
0
0
42
0.98
37707--37749
4
10.8
4
89
0
68
55
18
0
25
1.42
38779--38821
19
2.3
18
76
4
50
25
23
11
39
1.88
43141--43165
12
2.1
12
100
0
50
56
0
0
44
0.99
43933--43971
18
2.2
18
90
4
62
51
23
15
10
1.73
44574--44657
42
2.0
42
95
0
150
27
29
17
25
1.98
45746--45790
21
2.1
21
100
0
90
48
24
17
8
1.75
48182--48237
22
2.5
23
94
2
96
60
8
12
17
1.57
49117--49191
20
3.8
20
78
3
71
40
10
13
36
1.79
49114--49191
40
2.0
39
84
2
102
39
11
12
35
1.80
49798--49859
22
2.9
22
85
9
83
29
1
0
69
0.98

Tables:   1

The End!