genome.fa.s787.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold787
Parameters: 2 7 7 80 10 50 1000
Length:  120158

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1801--1836	13	2.8	13	91	4	56	30	13	16	38	1.88
1969--2009	22	2.0	20	86	13	57	31	21	4	41	1.74
2271--2322	20	2.4	21	84	9	61	19	48	26	5	1.71
4356--4406	20	2.6	20	87	3	68	39	19	13	27	1.90
6840--8962	476	4.5	477	83	3	2536	36	14	18	30	1.91
9124--10348	629	1.9	627	85	3	1690	35	14	18	31	1.91
9822--10830	473	2.1	473	84	4	1293	36	13	19	30	1.90
9678--10830	474	2.4	472	81	5	1330	37	13	18	30	1.90
10638--10983	158	2.2	158	82	3	412	36	14	19	28	1.92
13502--15316	158	11.5	156	68	13	569	37	14	17	30	1.90
12824--14198	476	2.9	472	85	2	1788	36	14	18	30	1.91
14033--14402	156	2.4	158	79	5	365	38	16	15	29	1.90
14149--15690	474	3.3	468	84	4	1907	36	15	17	30	1.91
14149--15905	474	3.7	462	80	6	1619	36	15	17	30	1.91
15122--16315	625	1.9	625	83	4	1544	34	15	18	30	1.93
15752--25561	476	20.4	476	72	11	5483	36	14	18	30	1.91
20793--21305	266	1.9	265	82	3	638	38	14	17	29	1.89
21501--24139	159	16.7	159	67	11	706	35	14	19	30	1.91
21884--22718	158	5.3	158	71	9	482	35	14	19	30	1.92
21501--22718	634	1.9	633	86	1	1724	35	14	19	31	1.91
23381--24040	158	4.2	158	67	13	368	36	13	19	30	1.90
25350--25731	157	2.4	156	83	5	464	37	15	16	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24878--26173	632	2.0	635	85	3	1716	36	15	18	30	1.91
25513--26787	477	2.7	473	84	4	1579	36	14	18	31	1.91
26612--26946	159	2.1	159	84	1	420	36	14	17	31	1.91
26661--26988	159	2.1	159	80	3	356	36	14	18	30	1.91
27098--27391	157	1.9	155	83	5	378	35	15	19	30	1.92
27252--28949	455	3.7	460	78	10	1669	35	14	18	30	1.91
30157--31458	474	2.7	474	86	2	1803	35	14	19	30	1.92
30801--33051	158	14.2	158	68	12	725	35	14	19	30	1.92
31004--33051	797	2.6	797	96	0	3764	34	14	19	31	1.92
32517--34724	476	4.7	475	76	9	1659	35	14	18	30	1.92
35118--35143	13	2.0	13	100	0	52	38	15	15	30	1.88
35100--35163	32	2.0	33	87	3	94	40	17	14	28	1.88
37618--37651	17	2.0	17	100	0	68	52	17	5	23	1.66
43897--43922	13	2.0	13	100	0	52	38	15	15	30	1.88
43879--43942	32	2.0	33	87	3	94	40	17	14	28	1.88
44837--45016	91	2.0	91	84	4	238	32	16	18	31	1.94
44710--45160	248	1.8	248	92	0	760	34	16	18	30	1.93
44928--45882	157	6.1	157	75	8	689	35	16	18	29	1.93
44924--46182	628	2.0	630	89	1	1945	35	15	18	30	1.92
46178--47307	477	2.4	475	86	2	1565	35	15	18	30	1.92
47272--49842	475	5.4	474	87	2	3341	35	15	18	30	1.92
46178--50481	158	27.2	156	66	13	948	35	15	18	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53001--53026	12	2.2	12	100	0	52	46	23	15	15	1.83
53448--74269	476	43.4	476	85	5	26707	36	14	20	28	1.92
53448--120146	951	69.9	951	84	5	64428	36	14	20	28	1.92
62317--62962	159	4.1	158	64	12	377	35	13	21	28	1.91
73512--75015	759	2.0	759	91	1	2433	36	14	20	28	1.92
74271--75980	475	3.6	475	92	1	2701	36	14	20	28	1.92
75222--76739	759	2.0	759	90	1	2389	36	14	20	28	1.92
75981--78042	476	4.3	476	91	1	3310	36	14	20	28	1.92
77237--78829	794	2.0	795	94	0	2778	37	13	20	29	1.91
78031--120146	475	88.3	475	88	3	57700	36	14	20	28	1.92

Tables:   1

The End!