Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold79
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4189514
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 5041 characters in sequence are not A, C, G, or T
File 1 of 26
Found at i:4317 original size:14 final size:14
Alignment explanation
Indices: 4298--4325 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
4288 ATTTTTATGA
4298 GTTTTTCATTTTTT
1 GTTTTTCATTTTTT
4312 GTTTTTCATTTTTT
1 GTTTTTCATTTTTT
4326 TCATTGAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.79
Consensus pattern (14 bp):
GTTTTTCATTTTTT
Found at i:5723 original size:20 final size:20
Alignment explanation
Indices: 5700--5824 Score: 97
Period size: 20 Copynumber: 5.7 Consensus size: 20
5690 AAGTACCTAG
*
5700 ATGTATTGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
5720 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
5740 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
*
5760 ATGTATCGTTACATTCTGTCTTTTTACCTA
1 ATGTATCGATACA-------TTTTT--C-A
5790 GATGTATCGATACATTTTTCA
1 -ATGTATCGATACATTTTTCA
5811 ATGTATCGATACAT
1 ATGTATCGATACAT
5825 CTAGTTAAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
20 58 0.70
21 1 0.01
22 1 0.01
24 5 0.06
27 4 0.05
29 1 0.01
30 1 0.01
31 12 0.14
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:14411 original size:33 final size:32
Alignment explanation
Indices: 14365--14432 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
14355 CGTTACAAGC
**
14365 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATACTAT-GTGTATCGATA
* *
14398 CAATGTATTGATACATACTGTGTGTATCGATA
1 CAATGTATCGATACATACTATGTGTATCGATA
14430 CAA
1 CAA
14433 GTTTGGCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 14 0.45
33 17 0.55
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (32 bp):
CAATGTATCGATACATACTATGTGTATCGATA
Found at i:14521 original size:13 final size:13
Alignment explanation
Indices: 14503--14527 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14493 ACATTTGGTC
14503 ATGTATCGATACA
1 ATGTATCGATACA
14516 ATGTATCGATAC
1 ATGTATCGATAC
14528 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:16847 original size:20 final size:21
Alignment explanation
Indices: 16818--16858 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
16808 TGTTTTTAGT
16818 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
16837 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
16859 AAGAATTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:23201 original size:13 final size:13
Alignment explanation
Indices: 23183--23207 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23173 CATTTTATGG
23183 TGTATCGATACAA
1 TGTATCGATACAA
23196 TGTATCGATACA
1 TGTATCGATACA
23208 TACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:23207 original size:33 final size:32
Alignment explanation
Indices: 23160--23227 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
23150 CGTTACAAGC
**
23160 CAATATATCGATACATTTTATGGTGTATCGATA
1 CAATATATCGATACATACTAT-GTGTATCGATA
* *
23193 CAATGTATCGATACATACTGTGTGTATCGATA
1 CAATATATCGATACATACTATGTGTATCGATA
23225 CAA
1 CAA
23228 GTTTGGCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 14 0.45
33 17 0.55
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATATATCGATACATACTATGTGTATCGATA
Found at i:23316 original size:13 final size:13
Alignment explanation
Indices: 23298--23322 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23288 ACATTTGGTC
23298 ATGTATCGATACA
1 ATGTATCGATACA
23311 ATGTATCGATAC
1 ATGTATCGATAC
23323 TGTGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:28909 original size:13 final size:13
Alignment explanation
Indices: 28891--28915 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28881 ATAATGCACA
28891 GTATCGATACATT
1 GTATCGATACATT
28904 GTATCGATACAT
1 GTATCGATACAT
28916 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:28912 original size:33 final size:32
Alignment explanation
Indices: 28870--28932 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
28860 CACCTTCAGA
*
28870 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAA-CCACAGTATCGATACAT
* *
28903 TGTATCGATACATGACCACTGTATCGATAC
1 TGTATCGATACATAACCACAGTATCGATAC
28933 TTGCAAAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (32 bp):
TGTATCGATACATAACCACAGTATCGATACAT
Found at i:37702 original size:13 final size:13
Alignment explanation
Indices: 37684--37708 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37674 ATAATGCACA
37684 GTATCGATACATT
1 GTATCGATACATT
37697 GTATCGATACAT
1 GTATCGATACAT
37709 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:37705 original size:33 final size:32
Alignment explanation
Indices: 37663--37725 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
37653 CACCTTCAGA
*
37663 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAA-CCACAGTATCGATACAT
* *
37696 TGTATCGATACATGACCACTGTATCGATAC
1 TGTATCGATACATAACCACAGTATCGATAC
37726 TTGCAAAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (32 bp):
TGTATCGATACATAACCACAGTATCGATACAT
Found at i:37826 original size:13 final size:13
Alignment explanation
Indices: 37808--37834 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37798 ACATACAAGA
37808 TGTATCGATACAT
1 TGTATCGATACAT
37821 TGTATCGATACAT
1 TGTATCGATACAT
37834 T
1 T
37835 ATCAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:37853 original size:34 final size:32
Alignment explanation
Indices: 37788--37856 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
37778 CCTTAACTGT
*
37788 TTGTATCGATACATACAAGATGTATCGATACA
1 TTGTATCGATACATACAAGATGTATCAATACA
37820 TTGTATCGATACATTATCAA-ATTGTATCAATACA
1 TTGTATCGATACA-TA-CAAGA-TGTATCAATACA
37854 TTG
1 TTG
37857 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
32 13 0.39
33 3 0.09
34 17 0.52
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (32 bp):
TTGTATCGATACATACAAGATGTATCAATACA
Found at i:43349 original size:32 final size:28
Alignment explanation
Indices: 43297--43361 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 28
43287 GGAGAGGTTA
*
43297 TTTTA-GAAATAAAAAAGGGGAGAGATAT
1 TTTTAGGAAATAAAAAAGGGGAGAAAT-T
43325 TTTTAGGAAATAACAAAAAGGGGGAGAAATT
1 TTTTAGGAAAT-A-AAAAA-GGGGAGAAATT
43356 TTTTAG
1 TTTTAG
43362 TGTTTAAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 5 0.16
29 5 0.16
30 1 0.03
31 12 0.38
32 9 0.28
ACGTcount: A:0.46, C:0.02, G:0.25, T:0.28
Consensus pattern (28 bp):
TTTTAGGAAATAAAAAAGGGGAGAAATT
Found at i:43357 original size:29 final size:28
Alignment explanation
Indices: 43287--43357 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 28
43277 TTTTATAGAA
* *
43287 GGAGAGGTTATTTTAGAAATAAAAAAGG
1 GGAGAGATAATTTTAGAAATAAAAAAGG
*
43315 GGAGAGATATTTTTAGGAAATAACAAAAAGG
1 GGAGAGATAATTTTA-GAAAT-A-AAAAAGG
43346 GG-GAGA-AATTTT
1 GGAGAGATAATTTT
43358 TTAGTGTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 12 0.33
29 10 0.28
30 5 0.14
31 9 0.25
ACGTcount: A:0.45, C:0.01, G:0.28, T:0.25
Consensus pattern (28 bp):
GGAGAGATAATTTTAGAAATAAAAAAGG
Found at i:43899 original size:21 final size:20
Alignment explanation
Indices: 43859--43897 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
43849 TTAAGTATAA
43859 ATATTTTTCAAGTATTAAATC
1 ATATTTTTCAAG-ATTAAATC
43880 ATATGTTTTCAA-ATTAAA
1 ATAT-TTTTCAAGATTAAA
43898 ATAACTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 4 0.24
22 7 0.41
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (20 bp):
ATATTTTTCAAGATTAAATC
Found at i:46683 original size:21 final size:21
Alignment explanation
Indices: 46659--46698 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
46649 TATTTTTTTC
46659 AATTTTATTTATGAATTTTAT
1 AATTTTATTTATGAATTTTAT
* *
46680 AATTTTATTTTTTAATTTT
1 AATTTTATTTATGAATTTT
46699 TATCAATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (21 bp):
AATTTTATTTATGAATTTTAT
Found at i:49572 original size:38 final size:38
Alignment explanation
Indices: 49519--49591 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
49509 TTTTGCAAGA
* *
49519 AGGTGATTTCTTACATATAGAAGAAATGAAAGGAGAAT
1 AGGTGATTCCGTACATATAGAAGAAATGAAAGGAGAAT
* **
49557 AGGTGATTCCGTACATATGGAAGGGATGAAAGGAG
1 AGGTGATTCCGTACATATAGAAGAAATGAAAGGAG
49592 TTTAAGGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (38 bp):
AGGTGATTCCGTACATATAGAAGAAATGAAAGGAGAAT
Found at i:53019 original size:5 final size:5
Alignment explanation
Indices: 53009--53039 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
52999 GCTTTCAAAG
*
53009 AGAAA AGAAA AGAAC AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A
53040 AAATCTTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.77, C:0.03, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:53198 original size:3 final size:3
Alignment explanation
Indices: 53190--53222 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
53180 GTGTGTGTAT
53190 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
53223 GGTTTTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:53632 original size:2 final size:2
Alignment explanation
Indices: 53625--53653 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
53615 GTTCTGTTAT
53625 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
53654 CATTTTTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:54017 original size:2 final size:2
Alignment explanation
Indices: 54006--54041 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
53996 TTGTTTAGGA
54006 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
54042 AGATAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:55077 original size:24 final size:27
Alignment explanation
Indices: 55032--55086 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
55022 TTGTAAAGAA
*
55032 ATAAAATTGTAAAATAATTTAA-ATTT
1 ATAAAATTGTAAAATAAATTAACATTT
55058 ATAAAA-T-TAAAATAAATTAACCATTT
1 ATAAAATTGTAAAATAAATTAA-CATTT
55084 ATA
1 ATA
55087 TTATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 12 0.46
25 1 0.04
26 13 0.50
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (27 bp):
ATAAAATTGTAAAATAAATTAACATTT
Found at i:59643 original size:11 final size:11
Alignment explanation
Indices: 59619--59656 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
59609 TATATTTTTT
59619 ATTATTTTATA
1 ATTATTTTATA
59630 ATTATGTTTA-A
1 ATTAT-TTTATA
59641 ATTATTTTATA
1 ATTATTTTATA
*
59652 TTTAT
1 ATTAT
59657 ATAAATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 4 0.17
11 16 0.67
12 4 0.17
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (11 bp):
ATTATTTTATA
Found at i:59678 original size:18 final size:17
Alignment explanation
Indices: 59657--59715 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
59647 TTATATTTAT
59657 ATAAATTTAAATATATTA
1 ATAAATTTAAA-ATATTA
59675 AT-AA-TT--AATATTA
1 ATAAATTTAAAATATTA
59688 TATAAATTTTAAAATATTA
1 -ATAAA-TTTAAAATATTA
*
59707 ATATATTTA
1 ATAAATTTA
59716 TATCGTATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
13 6 0.18
14 3 0.09
15 2 0.06
16 2 0.06
17 8 0.24
18 6 0.18
19 7 0.21
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATAAATTTAAAATATTA
Found at i:59689 original size:32 final size:33
Alignment explanation
Indices: 59653--59718 Score: 100
Period size: 32 Copynumber: 2.0 Consensus size: 33
59643 TATTTTATAT
59653 TTATATAAA-TTTAAATATATTAATA-ATTAATA
1 TTATATAAATTTTAAA-ATATTAATATATTAATA
*
59685 TTATATAAATTTTAAAATATTAATATATTTATA
1 TTATATAAATTTTAAAATATTAATATATTAATA
59718 T
1 T
59719 CGTATTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
32 18 0.58
33 13 0.42
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (33 bp):
TTATATAAATTTTAAAATATTAATATATTAATA
Found at i:60069 original size:60 final size:58
Alignment explanation
Indices: 59956--60072 Score: 164
Period size: 60 Copynumber: 2.0 Consensus size: 58
59946 TCTGGTGAAG
* * *
59956 TCCAAAAGCTATGATTATATGCCAAAAAGTGAATTAGTAGTGCTGTTTTTCAATTAAA
1 TCCAAAAGCAATGATTATATGCCAAAAAGTGAATTAGTAGTGCGGTGTTTCAATTAAA
*
60014 TCCAAAAGCAATTGATTATAT-CCGAAAAAGTTGAATTAGTTGTGCGGTGTTTCAATTAA
1 TCCAAAAGCAA-TGATTATATGCC-AAAAAG-TGAATTAGTAGTGCGGTGTTTCAATTAA
60073 GTTGAGCAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
58 12 0.23
59 15 0.29
60 25 0.48
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (58 bp):
TCCAAAAGCAATGATTATATGCCAAAAAGTGAATTAGTAGTGCGGTGTTTCAATTAAA
Found at i:60284 original size:14 final size:14
Alignment explanation
Indices: 60265--60384 Score: 50
Period size: 14 Copynumber: 8.1 Consensus size: 14
60255 AATAATTTTA
60265 AATAAAATATTAAT
1 AATAAAATATTAAT
60279 AATAAAATAATTAA-
1 AATAAAAT-ATTAAT
*
60293 AATATAAT-TTAA-
1 AATAAAATATTAAT
* * *
60305 AAGATAATATTAAC
1 AATAAAATATTAAT
*
60319 AA-AATAATATAAATTT
1 AATAA-AATATTAA--T
*
60335 AATTAAATATATAAAT
1 AA-TAAA-ATATTAAT
60351 ATATTAAAATTTATATAAT
1 A-A-TAAAA--TAT-TAAT
*
60370 ATTAAAATATTAAT
1 AATAAAATATTAAT
60384 A
1 A
60385 TATTAGTATA
Statistics
Matches: 86, Mismatches: 7, Indels: 26
0.72 0.06 0.22
Matches are distributed among these distances:
12 11 0.13
13 5 0.06
14 29 0.34
15 8 0.09
16 5 0.06
17 12 0.14
18 12 0.14
19 4 0.05
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.38
Consensus pattern (14 bp):
AATAAAATATTAAT
Found at i:60388 original size:8 final size:8
Alignment explanation
Indices: 60340--60398 Score: 57
Period size: 8 Copynumber: 7.2 Consensus size: 8
60330 AATTTAATTA
*
60340 AATATATA
1 AATATATT
60348 AATATATT
1 AATATATT
*
60356 AAAAT-TT
1 AATATATT
60363 ATATAATATT
1 A-AT-ATATT
*
60373 AAAATATT
1 AATATATT
60381 AATATATT
1 AATATATT
*
60389 AGTATATT
1 AATATATT
60397 AA
1 AA
60399 AATTTATAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
7 3 0.07
8 32 0.78
9 3 0.07
10 3 0.07
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (8 bp):
AATATATT
Found at i:60395 original size:41 final size:40
Alignment explanation
Indices: 60340--60420 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 40
60330 AATTTAATTA
*
60340 AATATATAAATATATTAAAATTTATATAATATTAAAATATT
1 AATATATAAATATATTAAAATTTATA-AAAATTAAAATATT
* * *
60381 AATATATTAGTATATTAAAATTTATAAAAATTATAATATT
1 AATATATAAATATATTAAAATTTATAAAAATTAAAATATT
60421 TTAAAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 12 0.33
41 24 0.67
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (40 bp):
AATATATAAATATATTAAAATTTATAAAAATTAAAATATT
Found at i:60419 original size:24 final size:24
Alignment explanation
Indices: 60335--60420 Score: 70
Period size: 24 Copynumber: 3.5 Consensus size: 24
60325 ATATAAATTT
60335 AATTA-AATATATAAATATATTAAAA
1 AATTATAATAT-TAAA-ATATTAAAA
** *
60360 TTTATATAATATTAAAATATTAATA
1 AAT-TATAATATTAAAATATTAAAA
*
60385 TATTAGT-ATATTAAAAT-TTATAAA
1 AATTA-TAATATTAAAATATTA-AAA
60409 AATTATAATATT
1 AATTATAATATT
60421 TTAAAATAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
23 4 0.08
24 23 0.46
25 12 0.24
26 6 0.12
27 5 0.10
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (24 bp):
AATTATAATATTAAAATATTAAAA
Found at i:64491 original size:18 final size:19
Alignment explanation
Indices: 64458--64495 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
64448 GAAATTTCTC
*
64458 GAGAAAATACAAAAAGAAA
1 GAGAAAATAAAAAAAGAAA
64477 GAGAAAA-AAAAAAAGAAA
1 GAGAAAATAAAAAAAGAAA
64495 G
1 G
64496 TGTTTAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (19 bp):
GAGAAAATAAAAAAAGAAA
Found at i:65555 original size:28 final size:28
Alignment explanation
Indices: 65523--65617 Score: 81
Period size: 28 Copynumber: 3.4 Consensus size: 28
65513 ATTATCTTAT
*
65523 ATTTTATATAATATTTTTATATAATTAA
1 ATTTTATATAATAATTTTATATAATTAA
* * * *
65551 ATTTTAAAT-TTAAATTTA-ATTATTAA
1 ATTTTATATAATAATTTTATATAATTAA
*
65577 ATATTTTTA-AATAAATTTTAT-TAATTATA
1 AT-TTTATATAAT-AATTTTATATAATTA-A
65606 ATTTTATATAAT
1 ATTTTATATAAT
65618 TAAAAATTTT
Statistics
Matches: 50, Mismatches: 11, Indels: 11
0.69 0.15 0.15
Matches are distributed among these distances:
26 9 0.18
27 11 0.22
28 24 0.48
29 6 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
ATTTTATATAATAATTTTATATAATTAA
Found at i:65609 original size:27 final size:27
Alignment explanation
Indices: 65537--65621 Score: 77
Period size: 27 Copynumber: 3.0 Consensus size: 27
65527 TATATAATAT
65537 TTTTATATAATTAAA-TTTTAAATTTAAA
1 TTTTAT-TAATTAAATTTTTAAA-TTAAA
*
65565 TTTAATT-ATTAAATATTTTTAAA-TAAA
1 TTTTATTAATT-AA-ATTTTTAAATTAAA
65592 TTTTATTAATTATAATTTTATATAATTAAA
1 TTTTATTAATTA-AATTTT-TA-AATTAAA
65622 AATTTTATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
26 3 0.06
27 19 0.40
28 12 0.26
29 9 0.19
30 4 0.09
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
TTTTATTAATTAAATTTTTAAATTAAA
Found at i:65627 original size:17 final size:16
Alignment explanation
Indices: 65537--65630 Score: 66
Period size: 13 Copynumber: 6.4 Consensus size: 16
65527 TATATAATAT
65537 TTTTATATAATT-AAA
1 TTTTATATAATTAAAA
*
65552 -TTT-TA-AATTTAAA
1 TTTTATATAATTAAAA
*
65565 -TTTA-ATTATTAAATA
1 TTTTATATAATTAAA-A
65580 TTTT-TA-AA-T-AAA
1 TTTTATATAATTAAAA
*
65592 TTTTAT-TAATTATAA
1 TTTTATATAATTAAAA
65607 TTTTATATAATTAAAAA
1 TTTTATATAATT-AAAA
65624 TTTTATA
1 TTTTATA
65631 ATATAAGGAC
Statistics
Matches: 62, Mismatches: 5, Indels: 22
0.70 0.06 0.25
Matches are distributed among these distances:
12 9 0.15
13 14 0.23
14 10 0.16
15 10 0.16
16 9 0.15
17 10 0.16
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TTTTATATAATTAAAA
Found at i:65630 original size:15 final size:15
Alignment explanation
Indices: 65589--65632 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
65579 ATTTTTAAAT
*
65589 AAATTTTATTAATTAT
1 AAATTTTA-TAATTAA
*
65605 AATTTTATATAATTAA
1 AAATTT-TATAATTAA
65621 AAATTTTATAAT
1 AAATTTTATAAT
65633 ATAAGGACGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 6 0.25
16 16 0.67
17 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
AAATTTTATAATTAA
Found at i:66814 original size:18 final size:19
Alignment explanation
Indices: 66788--66825 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
66778 ATTATATATC
66788 TTATATTTTAAAT-TATTT
1 TTATATTTTAAATATATTT
*
66806 TTATTTTTTAAATATATTT
1 TTATATTTTAAATATATTT
66825 T
1 T
66826 AAAAAGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATATTTTAAATATATTT
Found at i:66826 original size:18 final size:18
Alignment explanation
Indices: 66781--66826 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
66771 AAAAATTATT
*
66781 ATATATCTTATATTTTAA
1 ATATATTTTATATTTTAA
*
66799 AT-TATTTTTATTTTTTAA
1 ATATA-TTTTATATTTTAA
66817 ATATATTTTA
1 ATATATTTTA
66827 AAAAGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 2 0.08
18 20 0.83
19 2 0.08
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
ATATATTTTATATTTTAA
Found at i:67844 original size:31 final size:31
Alignment explanation
Indices: 67772--67844 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 31
67762 ATTTAATTTG
*
67772 TTTAATTTTTTATAAATTTTGATATATTTAA
1 TTTAATTTTTTATAAACTTTGATATATTTAA
* * * * *
67803 ATCAAATTTTTATATTACTTTGA-ATATTTAT
1 TTTAATTTTTTATA-AACTTTGATATATTTAA
67834 TTTAATTTTTT
1 TTTAATTTTTT
67845 CTTATCTTAT
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
31 26 0.81
32 6 0.19
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (31 bp):
TTTAATTTTTTATAAACTTTGATATATTTAA
Found at i:71979 original size:6 final size:6
Alignment explanation
Indices: 71965--71997 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
71955 TGGGCTCTCA
*
71965 TCATAT TCATCT TCATCT TCATCT TCATCT TCA
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCA
71998 CCGTCATTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.21, C:0.30, G:0.00, T:0.48
Consensus pattern (6 bp):
TCATCT
Found at i:72011 original size:18 final size:18
Alignment explanation
Indices: 71965--72004 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
71955 TGGGCTCTCA
* * *
71965 TCATATTCATCTTCATCT
1 TCATCTTCATCTTCACCG
71983 TCATCTTCATCTTCACCG
1 TCATCTTCATCTTCACCG
72001 TCAT
1 TCAT
72005 TGTCATCCTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.20, C:0.33, G:0.03, T:0.45
Consensus pattern (18 bp):
TCATCTTCATCTTCACCG
Found at i:76631 original size:18 final size:18
Alignment explanation
Indices: 76575--76634 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 18
76565 TTCTCTCATT
*
76575 GATACATTTGTGGT-GGAG
1 GATACATTTGAGGTAGG-G
* *
76593 GATAAATTTGAGG-A--T
1 GATACATTTGAGGTAGGG
76608 GATACATTTGAGGTAGGG
1 GATACATTTGAGGTAGGG
76626 GATACATTT
1 GATACATTT
76635 ATGGTAGAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 12 0.36
16 1 0.03
18 20 0.61
ACGTcount: A:0.30, C:0.05, G:0.32, T:0.33
Consensus pattern (18 bp):
GATACATTTGAGGTAGGG
Found at i:80249 original size:3 final size:3
Alignment explanation
Indices: 80243--80273 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
80233 TATGTATTAT
80243 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
80274 AATCTAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:80294 original size:18 final size:19
Alignment explanation
Indices: 80243--80292 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
80233 TATGTATTAT
80243 ATAATAATAATAATAA--TA
1 ATAATAATAATAA-AATCTA
80261 ATAATAATAATAAAATCTA
1 ATAATAATAATAAAATCTA
80280 AT-ATAAT-ATAAAA
1 ATAATAATAATAAAA
80293 ATTTATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.27
18 18 0.60
19 4 0.13
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAATAATAATAAAATCTA
Found at i:80593 original size:6 final size:6
Alignment explanation
Indices: 80567--80644 Score: 54
Period size: 6 Copynumber: 13.0 Consensus size: 6
80557 TTTAATTATT
* * * *
80567 TAAAT- TAAAAA T-AATA AAAATA TAAATA TCAAA-A TAAATA TTATTA
1 TAAATA TAAATA TAAATA TAAATA TAAATA T-AAATA TAAATA TAAATA
* *
80613 TAAATC CAAATA TAAATTA TAAATAA TAAATA
1 TAAATA TAAATA TAAA-TA TAAAT-A TAAATA
80645 ATATATAATA
Statistics
Matches: 55, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
5 10 0.18
6 30 0.55
7 15 0.27
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (6 bp):
TAAATA
Found at i:80825 original size:14 final size:14
Alignment explanation
Indices: 80808--80841 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
80798 AGAAAATAAT
80808 AAAATTATTTACAA
1 AAAATTATTTACAA
*
80822 AAAA-TATTTATAA
1 AAAATTATTTACAA
80835 AAAATTA
1 AAAATTA
80842 ATAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (14 bp):
AAAATTATTTACAA
Found at i:80836 original size:12 final size:12
Alignment explanation
Indices: 80806--80871 Score: 62
Period size: 12 Copynumber: 5.5 Consensus size: 12
80796 ATAGAAAATA
*
80806 ATAAAATTATTT
1 ATAAAAATATTT
*
80818 ACAAAAAATATTT
1 A-TAAAAATATTT
*
80831 ATAAAAA-ATTA
1 ATAAAAATATTT
*
80842 ATAAAATTATTT
1 ATAAAAATATTT
* *
80854 ATAAAAAAATTA
1 ATAAAAATATTT
80866 ATAAAA
1 ATAAAA
80872 TTTTATTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
11 9 0.21
12 24 0.56
13 10 0.23
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAAAAATATTT
Found at i:80839 original size:35 final size:36
Alignment explanation
Indices: 80774--80871 Score: 119
Period size: 36 Copynumber: 2.7 Consensus size: 36
80764 CCTATCACTG
*
80774 TTATTTATAAAAAAAGTAATTTATAGAAAA-TAATAAAA
1 TTATTTA-AAAAAAA-T-ATTTATAAAAAATTAATAAAA
*
80812 TTATTTACAAAAAATATTTATAAAAAATTAATAAAA
1 TTATTTAAAAAAAATATTTATAAAAAATTAATAAAA
* *
80848 TTATTTATAAAAAA-ATTAATAAAA
1 TTATTTAAAAAAAATATTTATAAAA
80872 TTTTATTTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
35 20 0.36
36 22 0.40
37 6 0.11
38 7 0.13
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (36 bp):
TTATTTAAAAAAAATATTTATAAAAAATTAATAAAA
Found at i:80860 original size:24 final size:23
Alignment explanation
Indices: 80821--80891 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 23
80811 ATTATTTACA
*
80821 AAAAATATTTATAAAAAATTAAT
1 AAAATTATTTATAAAAAATTAAT
80844 AAAATTATTTATAAAAAAATTAAT
1 AAAATTATTTAT-AAAAAATTAAT
* *
80868 AAAATTTTATTTTTAAAAATTTAA
1 AAAA--TTATTTATAAAAAATTAA
80892 AAATTAATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
23 11 0.26
24 15 0.36
25 9 0.21
26 7 0.17
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
AAAATTATTTATAAAAAATTAAT
Found at i:80901 original size:22 final size:23
Alignment explanation
Indices: 80858--80901 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
80848 TTATTTATAA
* *
80858 AAAAATTAATAAAATTTTATTTTT
1 AAAAATT-ATAAAAATTAATTTTT
80882 AAAAATT-TAAAAATTAATTT
1 AAAAATTATAAAAATTAATTT
80902 CTTCGGCCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 11 0.61
24 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AAAAATTATAAAAATTAATTTTT
Found at i:82406 original size:3 final size:3
Alignment explanation
Indices: 82398--82432 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
82388 TTTAAATCAG
82398 AAT AAT AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
82433 TCAATCTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:82411 original size:17 final size:17
Alignment explanation
Indices: 82391--82431 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
82381 GTCACTGTTT
*
82391 AAATCAGAATAATAATA
1 AAATAAGAATAATAATA
*
82408 AAATAATAATAATAATA
1 AAATAAGAATAATAATA
82425 ATAATAA
1 A-AATAA
82432 TTCAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (17 bp):
AAATAAGAATAATAATA
Found at i:82850 original size:2 final size:2
Alignment explanation
Indices: 82843--82879 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
82833 ACACTGGTAA
82843 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82880 ATTACAAGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:92280 original size:20 final size:19
Alignment explanation
Indices: 92235--92281 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 19
92225 AAAAGGTGTA
92235 TTTGGATTGAATGATGCAT
1 TTTGGATTGAATGATGCAT
92254 TGGTTGGA-TGAAATGATGCACT
1 T--TTGGATTG-AATGATGCA-T
92276 TTTGGA
1 TTTGGA
92282 AGGAAAGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 7 0.29
21 14 0.58
22 2 0.08
ACGTcount: A:0.26, C:0.06, G:0.30, T:0.38
Consensus pattern (19 bp):
TTTGGATTGAATGATGCAT
Found at i:99306 original size:22 final size:21
Alignment explanation
Indices: 99275--99330 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
99265 TTATTCAATT
* * *
99275 TTTAAATTTTTATATATTTATA
1 TTTAATTTTTTAAAAATTTA-A
99297 TTTAATTTTTTAAAAAATTTAA
1 TTTAATTTTTT-AAAAATTTAA
99319 TTT-ATTTTTTAA
1 TTTAATTTTTTAA
99331 TTTAATTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 2 0.07
21 7 0.23
22 14 0.47
23 7 0.23
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTAATTTTTTAAAAATTTAA
Found at i:101100 original size:60 final size:59
Alignment explanation
Indices: 100983--101101 Score: 159
Period size: 60 Copynumber: 2.0 Consensus size: 59
100973 GTATGAAATA
* * * * *
100983 TTTAAATTTTAAATAAAATTAAATCTAAAATAATTAAATGCATGATTCATTATAATTAT
1 TTTAAAATTTAAATAAAATCAAATCTAAAATAATCAAATGCATCATTCATTACAATTAT
*
101042 TTTAAAATTTAAATCAAAGTCAAATCTAAAATAATCAAATGCATCATTC-TTGACAATTAT
1 TTTAAAATTTAAAT-AAAATCAAATCTAAAATAATCAAATGCATCATTCATT-ACAATTAT
101102 CCAAGAAAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
59 15 0.29
60 37 0.71
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (59 bp):
TTTAAAATTTAAATAAAATCAAATCTAAAATAATCAAATGCATCATTCATTACAATTAT
Found at i:103439 original size:13 final size:13
Alignment explanation
Indices: 103421--103445 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103411 ATATAAAGAA
103421 AGAAAAAAAAAAG
1 AGAAAAAAAAAAG
103434 AGAAAAAAAAAA
1 AGAAAAAAAAAA
103446 CGATGTTCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AGAAAAAAAAAAG
Found at i:105564 original size:58 final size:57
Alignment explanation
Indices: 105492--105660 Score: 189
Period size: 58 Copynumber: 2.9 Consensus size: 57
105482 ATCTCTAAGT
* * *
105492 ATTTTAGGGTTATTTAGATTATTTTACATAATTTAAAGACCATTTAGCAATTTCATGC
1 ATTTTA-GGTTATTTAGATTATTTTACATAATCTAAAGAACATTTAGTAATTTCATGC
* * * * *
105550 ATTTTAGGACTATTTAGGTTATTTTATATAATCTAGAA-AACATTTGGTTATTTCATGC
1 ATTTTAGG-TTATTTAGATTATTTTACATAATCTA-AAGAACATTTAGTAATTTCATGC
* *
105608 ATTTTAGGTTCATTTAGATTATTTTATC-TAATCTAGAGATCATTTAGTAATTT
1 ATTTTAGGTT-ATTTAGATTATTTTA-CATAATCTAAAGAACATTTAGTAATTT
105661 TTATGTATGT
Statistics
Matches: 91, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
57 4 0.04
58 85 0.93
59 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.47
Consensus pattern (57 bp):
ATTTTAGGTTATTTAGATTATTTTACATAATCTAAAGAACATTTAGTAATTTCATGC
Found at i:107210 original size:14 final size:15
Alignment explanation
Indices: 107176--107210 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
107166 TTTCACATAT
107176 TTTTCATTTCATGCA
1 TTTTCATTTCATGCA
107191 TTTTCATTTCATGC-
1 TTTTCATTTCATGCA
107205 TTTTCA
1 TTTTCA
107211 CGTAACATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (15 bp):
TTTTCATTTCATGCA
Found at i:107251 original size:5 final size:5
Alignment explanation
Indices: 107235--107366 Score: 138
Period size: 5 Copynumber: 26.4 Consensus size: 5
107225 CATGCATAAT
* * * * * *
107235 TTTCA TTGCA TTTCA TTTCA TTTCA TTGCA TTGCT TTTCA TTGCA TTGCA
1 TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA
* * * * *
107285 TTTCA TTACA TTGCA TTTCA TTTCA TTTCA TTGCA TTTCA TTGCA TTGCA
1 TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA
* * *
107335 TTTCA TTGCA TTGCA TTTCA TTTCA TTGCA TT
1 TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TT
107367 GGTTTCATGC
Statistics
Matches: 109, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 109 1.00
ACGTcount: A:0.20, C:0.20, G:0.09, T:0.52
Consensus pattern (5 bp):
TTTCA
Found at i:107255 original size:15 final size:15
Alignment explanation
Indices: 107238--107366 Score: 159
Period size: 15 Copynumber: 8.6 Consensus size: 15
107228 GCATAATTTT
*
107238 CATTGCATTTCATTT
1 CATTGCATTTCATTG
* *
107253 CATTTCATTGCATTG
1 CATTGCATTTCATTG
* * *
107268 CTTTTCATTGCATTG
1 CATTGCATTTCATTG
* *
107283 CATTTCATTACATTG
1 CATTGCATTTCATTG
* *
107298 CATTTCATTTCATTT
1 CATTGCATTTCATTG
107313 CATTGCATTTCATTG
1 CATTGCATTTCATTG
107328 CATTGCATTTCATTG
1 CATTGCATTTCATTG
*
107343 CATTGCATTTCATTT
1 CATTGCATTTCATTG
107358 CATTGCATT
1 CATTGCATT
107367 GGTTTCATGC
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 103 1.00
ACGTcount: A:0.20, C:0.20, G:0.09, T:0.50
Consensus pattern (15 bp):
CATTGCATTTCATTG
Found at i:107260 original size:20 final size:20
Alignment explanation
Indices: 107235--107367 Score: 167
Period size: 20 Copynumber: 6.7 Consensus size: 20
107225 CATGCATAAT
*
107235 TTTCATTGCATTTCATTTCA
1 TTTCATTGCATTGCATTTCA
*
107255 TTTCATTGCATTGCTTTTCA
1 TTTCATTGCATTGCATTTCA
* * *
107275 TTGCATTGCATTTCATTACA
1 TTTCATTGCATTGCATTTCA
* * *
107295 TTGCATTTCATTTCATTTCA
1 TTTCATTGCATTGCATTTCA
* * *
107315 TTGCATTTCATTGCATTGCA
1 TTTCATTGCATTGCATTTCA
107335 TTTCATTGCATTGCATTTCA
1 TTTCATTGCATTGCATTTCA
107355 TTTCATTGCATTG
1 TTTCATTGCATTG
107368 GTTTCATGCA
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 100 1.00
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.51
Consensus pattern (20 bp):
TTTCATTGCATTGCATTTCA
Found at i:108140 original size:16 final size:17
Alignment explanation
Indices: 108112--108150 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
108102 AATTTCATGC
108112 TATTTTTGCTTGTT-TT
1 TATTTTTGCTTGTTATT
108128 TATTGTTTG-TTGTTATT
1 TATT-TTTGCTTGTTATT
108145 TATTTT
1 TATTTT
108151 CCAATTGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.10, C:0.03, G:0.13, T:0.74
Consensus pattern (17 bp):
TATTTTTGCTTGTTATT
Found at i:108650 original size:16 final size:16
Alignment explanation
Indices: 108620--108650 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
108610 TTTTTCCATA
*
108620 AAAATAATAACAAAAT
1 AAAATAATAAAAAAAT
108636 AAAATAATAAAAAAA
1 AAAATAATAAAAAAA
108651 ATCTTTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAATAATAAAAAAAT
Found at i:113666 original size:28 final size:28
Alignment explanation
Indices: 113626--113692 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
113616 AAAATCGGGA
** *
113626 TTGGAGTATCCCCTCGGAAGTAAC-AGGG
1 TTGGAGTATCCCCGAGGAAATAACGA-GG
*
113654 TTGGAGTATCCCCGATGAAATAACGAGG
1 TTGGAGTATCCCCGAGGAAATAACGAGG
113682 TTGGAGTATCC
1 TTGGAGTATCC
113693 TCGATTGTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 33 0.97
29 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (28 bp):
TTGGAGTATCCCCGAGGAAATAACGAGG
Found at i:113743 original size:52 final size:51
Alignment explanation
Indices: 113681--113850 Score: 157
Period size: 52 Copynumber: 3.3 Consensus size: 51
113671 AAATAACGAG
*
113681 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAA-CGGA
** * ** * *
113733 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAACGGA
* * * *
113784 GATTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAACCGGG
1 G-TTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAA-CGGA
113837 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
113851 TCGGAAACAA
Statistics
Matches: 94, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
51 4 0.04
52 74 0.79
53 16 0.17
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAACGGA
Found at i:113897 original size:27 final size:27
Alignment explanation
Indices: 113833--113905 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
113823 GCGATAAAAC
113833 CGGGGTTGGAGTATCCCCTCGGAAACAA
1 CGGGGTTGGAGTAT-CCCTCGGAAACAA
*
113861 CGGGGTTGGAGTATCCC-C-GAAGATTAA
1 CGGGGTTGGAGTATCCCTCGGAA-A-CAA
113888 CGGGGTTGGAGTATCCCT
1 CGGGGTTGGAGTATCCCT
113906 GATTGTGAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
25 3 0.07
26 2 0.05
27 22 0.54
28 14 0.34
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.22
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCTCGGAAACAA
Found at i:116352 original size:13 final size:13
Alignment explanation
Indices: 116334--116359 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
116324 ACAAAGATCC
116334 ATGTATCGATACA
1 ATGTATCGATACA
116347 ATGTATCGATACA
1 ATGTATCGATACA
116360 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:116355 original size:33 final size:33
Alignment explanation
Indices: 116313--116379 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
116303 AAAATTTCCA
***
116313 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
116346 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
116379 A
1 A
116380 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:116423 original size:19 final size:19
Alignment explanation
Indices: 116399--116466 Score: 94
Period size: 19 Copynumber: 3.9 Consensus size: 19
116389 CAGTAGCTAA
116399 TTATGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
116418 TTATGTATCGATAC---A-
1 TTATGTATCGATACAAAAC
116433 -T-TGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
116450 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
116467 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 1 0.02
19 28 0.65
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.34
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:116439 original size:13 final size:13
Alignment explanation
Indices: 116421--116445 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
116411 ACAAAACTTA
116421 TGTATCGATACAT
1 TGTATCGATACAT
116434 TGTATCGATACA
1 TGTATCGATACA
116446 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:116443 original size:32 final size:32
Alignment explanation
Indices: 116402--116464 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
116392 TAGCTAATTA
116402 TGTATCGATACAAAACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
116434 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
116465 AATTGTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:116631 original size:19 final size:19
Alignment explanation
Indices: 116607--116674 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
116597 AATTCAACAA
116607 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
116626 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
116641 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
116658 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
116675 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:116645 original size:32 final size:32
Alignment explanation
Indices: 116609--116671 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
116599 TTCAACAATT
*
116609 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
116641 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
116672 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:116646 original size:13 final size:13
Alignment explanation
Indices: 116628--116652 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
116618 ACATAAGTTT
116628 TGTATCGATACAA
1 TGTATCGATACAA
116641 TGTATCGATACA
1 TGTATCGATACA
116653 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:116732 original size:13 final size:13
Alignment explanation
Indices: 116714--116739 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
116704 CATTTTTCTG
116714 TGTATCGATACAT
1 TGTATCGATACAT
116727 TGTATCGATACAT
1 TGTATCGATACAT
116740 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:116736 original size:33 final size:33
Alignment explanation
Indices: 116694--116760 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
116684 GCCAAGGAAA
***
116694 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
116727 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
116760 T
1 T
116761 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:119323 original size:51 final size:51
Alignment explanation
Indices: 119260--119484 Score: 141
Period size: 52 Copynumber: 4.3 Consensus size: 51
119250 TTATTTCCGA
* * * * *
119260 GGGGATACTCCAACCTCGACTTTATTTCCAAAATATTGATTTTT-CATAATC
1 GGGGATACTCCAACC-CGACTTTATTGCCAAAACACTAATTTTTCCACAATC
* ** *
119311 GGGGATATTCCAATCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAA-CCCGACTTTATTGCCAAAACACTAATTTTTCCACAATC
** * ** * * **
119363 GGGGATACTCCAACCCTGGTTTTGTTTTCGAAACACCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACCC-GACTTTATTGCCAAAACACTAATTTTTCC-ACAATC
* * * *
119415 GAGGATACTCCAACTCCGATTTTATTTCCAAAAAACATCAATTTCTT-CACAATC
1 GGGGATACTCCAAC-CCGACTTTATTGCCAAAACAC-T-AATTT-TTCCACAATC
* *
119469 GGGGACATTCCAACCC
1 GGGGATACTCCAACCC
119485 CGTTAATCAT
Statistics
Matches: 135, Mismatches: 30, Indels: 16
0.75 0.17 0.09
Matches are distributed among these distances:
51 42 0.31
52 67 0.50
53 4 0.03
54 17 0.13
55 3 0.02
56 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACCCGACTTTATTGCCAAAACACTAATTTTTCCACAATC
Found at i:119397 original size:52 final size:51
Alignment explanation
Indices: 119298--119693 Score: 150
Period size: 52 Copynumber: 7.6 Consensus size: 51
119288 CAAAATATTG
* *
119298 ATTTTT-CATAATCGGGGATATTCCAATCCCGGTTTTATTGCTAAAACACTA
1 ATTTTTCCATAATCGGGGATACTCCAA-CCCGGTTTTATTGCTAAAACACCA
* * * *
119349 ATTTTTCCACAATCGGGGATACTCCAACCCTGGTTTTGTT-TTCGAAACACCA
1 ATTTTTCCATAATCGGGGATACTCCAACCC-GGTTTTATTGCT-AAAACACCA
* * * * * *
119401 A-TTTTCCTTTAATCGAGGATACTCCAACTCCGATTTTATTTCCAAAAAACATCA
1 ATTTTTCC-ATAATCGGGGATACTCCAAC-CCGGTTTTA-TTGC-TAAAACACCA
* * * * * * *** * *
119455 ATTTCTT-CACAATCGGGGACATTCCAACCCCGTTAATCATCGGGGATACTCCA
1 ATTT-TTCCATAATCGGGGATACTCCAACCCGGTT--TTATTGCTAAAACACCA
* ** * * * ***
119508 ACCCCGTTATTTCC--GA--GGGGATACTCCAACCTCGACTTTATTTCCAAAATATTG
1 A-----TT-TTTCCATAATCGGGGATACTCCAACC-CGGTTTTATTGCTAAAACACCA
*
119562 ATTTTT-CATAATCGGGGATACTCCAACCCCGGTTTTATT-TTCAAAACACCA
1 ATTTTTCCATAATCGGGGATACTCCAA-CCCGGTTTTATTGCT-AAAACACCA
* * * * *
119613 A-TTTTCCTTTAATCGGGGATACTCCAACACCGATTTTATTTCCAAAAATACCA
1 ATTTTTCC-ATAATCGGGGATACTCCAAC-CCGGTTTTA-TTGCTAAAACACCA
* *
119666 ATTTTT-CACAATCGAGGATACTCCAACC
1 ATTTTTCCATAATCGGGGATACTCCAACC
119694 TCGTTATTTC
Statistics
Matches: 247, Mismatches: 66, Indels: 64
0.66 0.18 0.17
Matches are distributed among these distances:
47 1 0.00
48 3 0.01
49 3 0.01
50 4 0.02
51 46 0.19
52 101 0.41
53 26 0.11
54 34 0.14
55 18 0.07
56 4 0.02
57 1 0.00
58 4 0.02
59 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.33
Consensus pattern (51 bp):
ATTTTTCCATAATCGGGGATACTCCAACCCGGTTTTATTGCTAAAACACCA
Found at i:119577 original size:212 final size:212
Alignment explanation
Indices: 119349--119749 Score: 628
Period size: 212 Copynumber: 1.9 Consensus size: 212
119339 TAAAACACTA
* * *
119349 ATTTTTCCACAATCGGGGATACTCCAACCCTGGTTTTGTTTTCGAAACACCAATTTTCCTTTAAT
1 ATTTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAAT
* * *
119414 CGAGGATACTCCAACTCCGATTTTATTTCCAAAAA-ACATCAATTTCTTCACAATCGGGGACATT
66 CGAGGATACTCCAACACCGATTTTATTTCCAAAAATAC--CAATTT-TTCACAATCGAGGACACT
* * *
119478 CCAACCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCG
128 CCAACCCCGTTATATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCTCG
119542 ACTTTATTTCCAAAATATTG
193 ACTTTATTTCCAAAATATTG
*
119562 ATTTTT-CATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAAT
1 ATTTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAAT
* *
119626 CGGGGATACTCCAACACCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCA
66 CGAGGATACTCCAACACCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGACACTCCA
* *
119691 ACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACC
131 ACCCCGTTATATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACC
119750 CCGTTATTTT
Statistics
Matches: 172, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
210 26 0.15
211 51 0.30
212 87 0.51
213 8 0.05
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (212 bp):
ATTTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAAT
CGAGGATACTCCAACACCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGACACTCCA
ACCCCGTTATATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCTCGACT
TTATTTCCAAAATATTG
Found at i:119583 original size:51 final size:51
Alignment explanation
Indices: 119524--119696 Score: 204
Period size: 52 Copynumber: 3.4 Consensus size: 51
119514 TTATTTCCGA
* ***
119524 GGGGATACTCCAACCTCGACTTTATTTCCAAAATATTGATTTTTCATAATC
1 GGGGATACTCCAACCTCGATTTTATTTCCAAAATACCAATTTTTCATAATC
* * * * * *
119575 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATC
1 GGGGATACTCCAACCTCGATTTTATTTCCAAAATACCAATTTTTC-ATAATC
*
119627 GGGGATACTCCAACAC-CGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAAC-CTCGATTTTATTTCC-AAAATACCAATTTTTCATAATC
*
119679 GAGGATACTCCAACCTCG
1 GGGGATACTCCAACCTCG
119697 TTATTTCATC
Statistics
Matches: 101, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
51 37 0.37
52 49 0.49
53 15 0.15
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCTCGATTTTATTTCCAAAATACCAATTTTTCATAATC
Found at i:119629 original size:264 final size:262
Alignment explanation
Indices: 119091--119692 Score: 906
Period size: 264 Copynumber: 2.3 Consensus size: 262
119081 TTCTCAATTC
* * * *
119091 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAGACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACACCGATTTTATTTTCAA-ACACCAATTTTCTATAATCGAGGA
* *
119156 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCTAACCC
65 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGACACTCCAACCC
*
119221 CGTTGATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGACTTTATT
130 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGACTTTATT
* * *
119286 TCCAAAATATTGATTTTTCATAATCGGGGATATTCCAATCCCGGTTTTATTGCTAAAACACTAAT
195 TCCAAAATATTGATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACCAAT
119351 TTT
260 TTT
* * *
119354 TCCACAATCGGGGATACTCCAAC-CCTGGTTTTGTTTTCGAAACACCAATTTTCCTTTAATCGAG
1 TCCACAATCGGGGATACTCCAACACC-GATTTTATTTTC-AAACACCAATTTT-CTATAATCGAG
* *
119418 GATACTCCAACTCCGATTTTATTTCCAAAAAACATCAATTTCTTCACAATCGGGGACATTCCAAC
63 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGACACTCCAAC
119483 CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGACTTTA
128 CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGACTTTA
*
119548 TTTCCAAAATATTGATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATT-TTCAAAACACC
193 TTTCCAAAATATTGATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCT-AAAACACC
119612 AA-TTT
257 AATTTT
** * * *
119617 TCCTTTAATCGGGGATACTCCAACACCGATTTTATTTCCAAAAATACCAATTTT-TCACAATCGA
1 TCC-ACAATCGGGGATACTCCAACACCGATTTTATTTTC--AAACACCAATTTTCT-ATAATCGA
119681 GGATACTCCAAC
62 GGATACTCCAAC
119693 CTCGTTATTT
Statistics
Matches: 307, Mismatches: 24, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
262 2 0.01
263 50 0.16
264 241 0.79
265 14 0.05
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (262 bp):
TCCACAATCGGGGATACTCCAACACCGATTTTATTTTCAAACACCAATTTTCTATAATCGAGGAT
ACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGACACTCCAACCCC
GTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGACTTTATTT
CCAAAATATTGATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACCAATT
TT
Found at i:119712 original size:28 final size:28
Alignment explanation
Indices: 119676--119758 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
119666 ATTTTTCACA
* *
119676 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
*
119704 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
*
119732 --CGAGGGAACACTCCAACCCCGTTATTT
1 ATCG-GGG-ATACTCCAACCCCGTTATTT
119759 TCTTCAAAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.04
27 3 0.06
28 43 0.90
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.27
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:120761 original size:21 final size:21
Alignment explanation
Indices: 120737--120793 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
120727 CATTTGTAGG
*
120737 ATGTATCGATATATTCCACAA
1 ATGTATCGATACATTCCACAA
*
120758 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
120779 ATGTATCGATACATT
1 ATGTATCGATACATT
120794 TGGCTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.35
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:121628 original size:55 final size:55
Alignment explanation
Indices: 121544--122494 Score: 1417
Period size: 55 Copynumber: 17.3 Consensus size: 55
121534 AAAGTGTATT
* * *
121544 CTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTC
1 CTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
* *
121599 CTGCTTTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTC
*
121654 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
121709 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
* *
121764 CTGCTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGGC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
* *
121819 CTGCTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTGTGAAAGGTGTC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
121874 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
*
121929 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAATGTGTC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
121984 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
* * **
122039 CTGCTCTTCGGGGACT-GAAGGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGGAA-AATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTC
* *
122094 CTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTATGTGGGCTTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTC
*
122149 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
* * *
122204 CTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTGTC
1 CTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
*
122259 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
* ** *
122314 CTGCTCTTTGGGGACT-GAAGGGTGCCACCAACTTATGTGGGCTTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGGAA-AATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTC
*
122369 CTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTC
* *
122424 CTGCTCTTTGAGGAC-CGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTC
122479 CTGCTCTTTGAGGACT
1 CTGCTCTTTGAGGACT
122495 AAAAAGCGGA
Statistics
Matches: 837, Mismatches: 43, Indels: 31
0.92 0.05 0.03
Matches are distributed among these distances:
54 16 0.02
55 806 0.96
56 15 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (55 bp):
CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
Found at i:121894 original size:27 final size:27
Alignment explanation
Indices: 121864--121949 Score: 68
Period size: 27 Copynumber: 3.1 Consensus size: 27
121854 TGTGGGCTGT
121864 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
* ** * * * *
121891 GAAA-ATG-CCACCAACTTGTGTGGGCTTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGAC-TG
121919 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
121946 GAAA
1 GAAA
121950 ATGCCACCAA
Statistics
Matches: 40, Mismatches: 14, Indels: 10
0.62 0.22 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.12
27 14 0.35
28 10 0.25
29 5 0.12
30 3 0.08
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (27 bp):
GAAAGGTGTCCTGCTCTTTGAGGACTG
Found at i:122215 original size:26 final size:26
Alignment explanation
Indices: 122186--122268 Score: 60
Period size: 26 Copynumber: 3.1 Consensus size: 26
122176 CCAACTTGGG
122186 TGGGCTTTGAAAGGTGTCCTGCTCTT
1 TGGGCTTTGAAAGGTGTCCTGCTCTT
*** ** *
122212 TGGGGACTGAAAGGTG-CCACCAACTTGT
1 TGGGCTTTGAAAGGTGTCCTGC-TC-T-T
*
122240 GTGGGCTTTGAGAGGTGTCCTGCTCTT
1 -TGGGCTTTGAAAGGTGTCCTGCTCTT
122267 TG
1 TG
122269 AGGACTGGAA
Statistics
Matches: 39, Mismatches: 13, Indels: 10
0.63 0.21 0.16
Matches are distributed among these distances:
25 3 0.08
26 16 0.41
27 2 0.05
28 2 0.05
29 13 0.33
30 3 0.08
ACGTcount: A:0.14, C:0.19, G:0.34, T:0.33
Consensus pattern (26 bp):
TGGGCTTTGAAAGGTGTCCTGCTCTT
Found at i:122391 original size:26 final size:26
Alignment explanation
Indices: 122362--122447 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
122352 GGGCTTTAAG
122362 AGGTGTCCTGCTCTTTGAGGACTGAA
1 AGGTGTCCTGCTCTTTGAGGACTGAA
** * * * *
122388 AGGTG-CCACCAACTTGTGTGGGCTTTAA
1 AGGTGTCCTGC-TCTT-TGAGGAC-TGAA
*
122416 GAGGTGTCCTGCTCTTTGAGGACCGAA
1 -AGGTGTCCTGCTCTTTGAGGACTGAA
122443 AGGTG
1 AGGTG
122448 CCACCAACTT
Statistics
Matches: 42, Mismatches: 13, Indels: 10
0.65 0.20 0.15
Matches are distributed among these distances:
25 3 0.07
26 13 0.31
27 7 0.17
28 8 0.19
29 8 0.19
30 3 0.07
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.28
Consensus pattern (26 bp):
AGGTGTCCTGCTCTTTGAGGACTGAA
Found at i:123505 original size:24 final size:25
Alignment explanation
Indices: 123478--123525 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
123468 CTTTTCTCTC
*
123478 TTTTTCTTTGTTTTG-TTTTTTTTG
1 TTTTTCTTTCTTTTGCTTTTTTTTG
*
123502 TTTTTTTTTCTTTTGCTTTTTTTT
1 TTTTTCTTTCTTTTGCTTTTTTTT
123526 TTGAAGAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.85
Consensus pattern (25 bp):
TTTTTCTTTCTTTTGCTTTTTTTTG
Found at i:123515 original size:15 final size:15
Alignment explanation
Indices: 123462--123526 Score: 71
Period size: 14 Copynumber: 4.4 Consensus size: 15
123452 CTTAAGTAGG
* *
123462 TTTTTTCTTTTCTCT
1 TTTTTTCTTTTGTTT
*
123477 CTTTTTC-TTTGTTT
1 TTTTTTCTTTTGTTT
*
123491 TGTTTT-TTTTGTTT
1 TTTTTTCTTTTGTTT
123505 TTTTTTCTTTTGCTTT
1 TTTTTTCTTTTG-TTT
123521 TTTTTT
1 TTTTTT
123527 TGAAGAGAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
14 21 0.51
15 11 0.27
16 9 0.22
ACGTcount: A:0.00, C:0.11, G:0.06, T:0.83
Consensus pattern (15 bp):
TTTTTTCTTTTGTTT
Found at i:136050 original size:28 final size:28
Alignment explanation
Indices: 136010--136081 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
136000 GAAAAAAAAT
* ** *
136010 CGGGATTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
136038 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
136066 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
136082 TCGATTGTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:136132 original size:52 final size:50
Alignment explanation
Indices: 136070--136239 Score: 144
Period size: 52 Copynumber: 3.3 Consensus size: 50
136060 AAATAACGAG
* * * * *
136070 GTTGGAGTATCCTCGATTGTGAAAAATTGATATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTG-GAGTTTTGAAAATAAAA-CCGA
** * *
136122 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGAGTTTTGAAAATAAAACCGA
* * ** *
136173 GATTGGAGTATCCCCGATTGTGAAAAAATTAGTGTTTT-AGCGATAAAACCGGG
1 G-TTGGAGTATCCCCGATTGTG-AAAAATTGGAGTTTTGA-AAATAAAACC-GA
136226 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
136240 TCGAAAACAA
Statistics
Matches: 96, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
51 6 0.06
52 80 0.83
53 10 0.10
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGAGTTTTGAAAATAAAACCGA
Found at i:136286 original size:27 final size:27
Alignment explanation
Indices: 136222--136323 Score: 161
Period size: 27 Copynumber: 3.7 Consensus size: 27
136212 GCGATAAAAC
**
136222 CGGGGTTGGAGTATCCCCTCGAA-AACAA
1 CGGGGTTGGAGTAT-CCC-CGAAGATTAA
136250 CGGGGTTGGAGTATCCCCGAAGATTAA
1 CGGGGTTGGAGTATCCCCGAAGATTAA
136277 CGGGGTTGGAGTATCCCCGAAGATTAA
1 CGGGGTTGGAGTATCCCCGAAGATTAA
136304 CGGGGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
136324 TTGTGAAGAA
Statistics
Matches: 71, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
26 4 0.06
27 53 0.75
28 14 0.20
ACGTcount: A:0.25, C:0.22, G:0.33, T:0.21
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGAAGATTAA
Found at i:138768 original size:13 final size:13
Alignment explanation
Indices: 138750--138775 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
138740 ACAAAGATCC
138750 ATGTATCGATACA
1 ATGTATCGATACA
138763 ATGTATCGATACA
1 ATGTATCGATACA
138776 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:138771 original size:33 final size:33
Alignment explanation
Indices: 138729--138795 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
138719 AAAATTTTCA
***
138729 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
138762 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
138795 A
1 A
138796 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:138839 original size:19 final size:19
Alignment explanation
Indices: 138815--138869 Score: 101
Period size: 19 Copynumber: 2.9 Consensus size: 19
138805 CAGTAGCTAA
*
138815 TTATGTATCGATACAATAC
1 TTATGTATCGATACAAAAC
138834 TTATGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
138853 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
138870 TTGTTGAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:138949 original size:21 final size:21
Alignment explanation
Indices: 138925--138981 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
138915 CATTTGTAGG
138925 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
138946 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
138967 ATGTATCGATACATT
1 ATGTATCGATACATT
138982 TGGATAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:145788 original size:13 final size:13
Alignment explanation
Indices: 145770--145808 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
145760 GATAAAGTGT
145770 TTGAAAAAAAAAA
1 TTGAAAAAAAAAA
145783 TTGAAAAAAAAAA
1 TTGAAAAAAAAAA
*
145796 AT-AAATAAAAAAA
1 TTGAAA-AAAAAAA
145809 AAAATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 3 0.12
13 21 0.88
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (13 bp):
TTGAAAAAAAAAA
Found at i:145810 original size:14 final size:14
Alignment explanation
Indices: 145773--145817 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
145763 AAAGTGTTTG
*
145773 AAAAAAAAAATTGA
1 AAAAAAAAAATTAA
*
145787 AAAAAAAAAATAAATA
1 AAAAAAAAAAT-TA-A
145803 AAAAAAAAAATTAA
1 AAAAAAAAAATTAA
145817 A
1 A
145818 TGTATCGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 13 0.50
15 1 0.04
16 12 0.46
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.13
Consensus pattern (14 bp):
AAAAAAAAAATTAA
Found at i:145817 original size:17 final size:16
Alignment explanation
Indices: 145773--145818 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
145763 AAAGTGTTTG
*
145773 AAAAAAAA-AATTGAAA
1 AAAAAAAATAAAT-AAA
145789 AAAAAAAATAAATAAA
1 AAAAAAAATAAATAAA
145805 AAAAAAAATTAAAT
1 AAAAAAAA-TAAAT
145819 GTATCGATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 19 0.70
17 8 0.30
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (16 bp):
AAAAAAAATAAATAAA
Found at i:145842 original size:21 final size:21
Alignment explanation
Indices: 145816--145872 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
145806 AAAAAAATTA
145816 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
145837 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
145858 AATGTATCGATACAT
1 AATGTATCGATACAT
145873 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:145952 original size:19 final size:19
Alignment explanation
Indices: 145928--145995 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
145918 AATTCAACAA
145928 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
145947 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
145962 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
145979 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
145996 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:145967 original size:13 final size:13
Alignment explanation
Indices: 145949--145973 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
145939 ACATAAGTTT
145949 TGTATCGATACAA
1 TGTATCGATACAA
145962 TGTATCGATACA
1 TGTATCGATACA
145974 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:145971 original size:32 final size:32
Alignment explanation
Indices: 145930--145992 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
145920 TTCAACAATT
*
145930 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
145962 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
145993 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:146053 original size:13 final size:13
Alignment explanation
Indices: 146035--146060 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
146025 CATTTTTCTG
146035 TGTATCGATACAT
1 TGTATCGATACAT
146048 TGTATCGATACAT
1 TGTATCGATACAT
146061 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:146057 original size:33 final size:33
Alignment explanation
Indices: 146015--146081 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
146005 GCCAAGGAAA
***
146015 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
146048 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
146081 T
1 T
146082 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:148595 original size:28 final size:27
Alignment explanation
Indices: 148528--148600 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
148518 CTTCACAATC
* *
148528 GGGGACACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
148555 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
148583 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
148601 ACTTTATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 21 0.51
28 20 0.49
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.21
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:148645 original size:51 final size:51
Alignment explanation
Indices: 148583--148753 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
148573 TTATTTCTGA
* * *
148583 GGGGATACTCCAACCCCGACTTTATTTTCAAAATATCGATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTTTTCATAATC
* * * * *
148634 GGGGATACTCCAACCCCGGTTTTATTTTCACAACACCAATTTCTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTT-TTC-ATAATC
** * *
148687 GGGGATACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTTC-AAAATACCAATTTTTCATAATC
*
148739 GAGGATACTCCAACC
1 GGGGATACTCCAACC
148754 TCGTTATTTC
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 36 0.37
52 18 0.19
53 32 0.33
54 11 0.11
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTTTTCATAATC
Found at i:148772 original size:28 final size:28
Alignment explanation
Indices: 148736--148817 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
148726 ATTTTTCACA
*
148736 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
* *
148764 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
*
148792 --CGAGGGAACACTCCAACCTCGTTATT
1 ATCG-GGG-ATACTCCAACCTCGTTATT
148818 ATCTCCAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 3 0.07
28 41 0.89
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCTCGTTATTTC
Found at i:161217 original size:24 final size:25
Alignment explanation
Indices: 161190--161252 Score: 94
Period size: 23 Copynumber: 2.6 Consensus size: 25
161180 ACCTTCTCTT
161190 CAAAAAAAAAAAAAAAAAC-AAAAA
1 CAAAAAAAAAAAAAAAAACAAAAAA
161214 C-AAAAAAAAAAAAAAAACAAAAAA
1 CAAAAAAAAAAAAAAAAACAAAAAA
* *
161238 CAAAACAAAGAAAAA
1 CAAAAAAAAAAAAAA
161253 GAGAGAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
23 17 0.49
24 7 0.20
25 11 0.31
ACGTcount: A:0.89, C:0.10, G:0.02, T:0.00
Consensus pattern (25 bp):
CAAAAAAAAAAAAAAAAACAAAAAA
Found at i:161218 original size:17 final size:17
Alignment explanation
Indices: 161192--161246 Score: 83
Period size: 17 Copynumber: 3.2 Consensus size: 17
161182 CTTCTCTTCA
*
161192 AAAAAAAAAAAAAAAAC
1 AAAAACAAAAAAAAAAC
*
161209 AAAAACAAAAAAAAAAA
1 AAAAACAAAAAAAAAAC
161226 AAAAACAAAAAACAAAAC
1 AAAAACAAAAAA-AAAAC
161244 AAA
1 AAA
161247 GAAAAAGAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
17 27 0.79
18 7 0.21
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAACAAAAAAAAAAC
Found at i:161224 original size:29 final size:29
Alignment explanation
Indices: 161191--161252 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 29
161181 CCTTCTCTTC
161191 AAAAAAAAAAA-AAAAAACAAAAACAAAAA
1 AAAAAAAAAAACAAAAAAC-AAAACAAAAA
*
161220 AAAAAAAAAAACAAAAAACAAAACAAAGA
1 AAAAAAAAAAACAAAAAACAAAACAAAAA
161249 AAAA
1 AAAA
161253 GAGAGAAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 24 0.77
30 7 0.23
ACGTcount: A:0.90, C:0.08, G:0.02, T:0.00
Consensus pattern (29 bp):
AAAAAAAAAAACAAAAAACAAAACAAAAA
Found at i:161261 original size:24 final size:24
Alignment explanation
Indices: 161192--161252 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
161182 CTTCTCTTCA
161192 AAAAAAAAAAAAAAAAC-AAAAAC
1 AAAAAAAAAAAAAAAACAAAAAAC
161215 AAAAAAAAAAAAAAAACAAAAAAC
1 AAAAAAAAAAAAAAAACAAAAAAC
* *
161239 AAAACAAAGAAAAA
1 AAAAAAAAAAAAAA
161253 GAGAGAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
23 17 0.49
24 18 0.51
ACGTcount: A:0.90, C:0.08, G:0.02, T:0.00
Consensus pattern (24 bp):
AAAAAAAAAAAAAAAACAAAAAAC
Found at i:161267 original size:1 final size:1
Alignment explanation
Indices: 161191--161252 Score: 70
Period size: 1 Copynumber: 62.0 Consensus size: 1
161181 CCTTCTCTTC
* * * * * *
161191 AAAAAAAAAAAAAAAAACAAAAACAAAAAAAAAAAAAAAACAAAAAACAAAACAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
161253 GAGAGAAAAG
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.90, C:0.08, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:162295 original size:55 final size:55
Alignment explanation
Indices: 162230--162691 Score: 732
Period size: 55 Copynumber: 8.4 Consensus size: 55
162220 TCTCCTTCCG
*
162230 CTTTTCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
* * *
162285 TTTTCCAGTCCTCAAAGAGCAAGACACCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
*
162340 TTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
* *
162395 CCTTT-CAGTCCCCAAAGAGCAGGACACCT-TTCAAAGCCCACCCAAGTTGGTGGCA
1 -CTTTCCAGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCA
* *
162450 TTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCG
1 CTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
* *
162505 CCTTCCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
*
162560 CCTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCG
1 -CTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
* *
162616 CCTTCTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
*
162671 CCTTT-CAGTCCCCAAAGAGCA
1 -CTTTCCAGTCCTCAAAGAGCA
162692 AGTTGGTGGC
Statistics
Matches: 375, Mismatches: 26, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
54 5 0.01
55 310 0.83
56 60 0.16
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (55 bp):
CTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
Found at i:162589 original size:27 final size:27
Alignment explanation
Indices: 162507--162589 Score: 69
Period size: 28 Copynumber: 3.0 Consensus size: 27
162497 TGGTGGCGCC
162507 TTCCAGTCCTCAAAGAGCAGGACACCT
1 TTCCAGTCCTCAAAGAGCAGGACACCT
* * * * * **
162534 CTCAAAGCCCACACAAGTTGGTGG-CACCT
1 TTC-CAGTCCTCA-AAG-AGCAGGACACCT
162563 TTCCAGTCCTCAAAGAGCAGGACACCT
1 TTCCAGTCCTCAAAGAGCAGGACACCT
162590 CTTAAAGCCC
Statistics
Matches: 38, Mismatches: 14, Indels: 8
0.63 0.23 0.13
Matches are distributed among these distances:
26 3 0.08
27 10 0.26
28 12 0.32
29 10 0.26
30 3 0.08
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.18
Consensus pattern (27 bp):
TTCCAGTCCTCAAAGAGCAGGACACCT
Found at i:162698 original size:32 final size:32
Alignment explanation
Indices: 162658--162723 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
162648 AAAGCCCACA
162658 CAAGTTGGTGGCACCTTT-CAGTCCCCAAAGAG
1 CAAGTTGGTGGCA-CTTTCCAGTCCCCAAAGAG
* *
162690 CAAGTTGGTGGCATTTTCCAGTCCTCAAAGAG
1 CAAGTTGGTGGCACTTTCCAGTCCCCAAAGAG
162722 CA
1 CA
162724 GGACACCTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 3 0.10
32 28 0.90
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (32 bp):
CAAGTTGGTGGCACTTTCCAGTCCCCAAAGAG
Found at i:162749 original size:87 final size:87
Alignment explanation
Indices: 162603--162778 Score: 266
Period size: 87 Copynumber: 2.0 Consensus size: 87
162593 AAAGCCCACA
* *
162603 CAAGTTGGTGGCGCCTTCTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTG
1 CAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTG
162668 GCACCTTT-CAGTCCCCAAAGAG
66 GCA-CTTTCCAGTCCCCAAAGAG
**
162690 CAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGT
1 CAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGT
* *
162754 GGCATTTTCCAGTCCTCAAAGAG
65 GGCACTTTCCAGTCCCCAAAGAG
162777 CA
1 CA
162779 GGACACCTTT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
86 5 0.06
87 76 0.94
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (87 bp):
CAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTG
GCACTTTCCAGTCCCCAAAGAG
Found at i:162818 original size:142 final size:143
Alignment explanation
Indices: 162547--162833 Score: 497
Period size: 142 Copynumber: 2.0 Consensus size: 143
162537 AAAGCCCACA
162547 CAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGT
1 CAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGT
* *
162612 GGCGCCTTCTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
66 GGCACCTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
162677 AGTCCCCAAAGAG
131 AGTCCCCAAAGAG
*
162690 CAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGG
1 CAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGG
** *
162753 TGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
65 TGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTT
162818 CAGTCCCCAAAGAG
130 CAGTCCCCAAAGAG
162832 CA
1 CA
162834 GGACACCTCT
Statistics
Matches: 137, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
141 2 0.01
142 122 0.89
143 13 0.09
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (143 bp):
CAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGT
GGCACCTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
AGTCCCCAAAGAG
Done.