Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold79
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4189514
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 5041 characters in sequence are not A, C, G, or T
File 26 of 26
Found at i:4011958 original size:42 final size:43
Alignment explanation
Indices: 4011895--4011988 Score: 115
Period size: 42 Copynumber: 2.2 Consensus size: 43
4011885 TTTATTTGTA
*
4011895 ATATAATT-TTATTATAATATATTATATGAATATTATTT-TA-TT
1 ATATATTTGTTATTATAATATATTAT-T-AATATTATTTATATTT
* *
4011937 ATAT-TTTGTTATTGTAATATATTATTTATATTATTTATATTT
1 ATATATTTGTTATTATAATATATTATTAATATTATTTATATTT
4011979 ATATATTTGT
1 ATATATTTGT
4011989 ATATATATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
40 9 0.20
41 5 0.11
42 26 0.58
43 5 0.11
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (43 bp):
ATATATTTGTTATTATAATATATTATTAATATTATTTATATTT
Found at i:4011974 original size:26 final size:28
Alignment explanation
Indices: 4011885--4011997 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 28
4011875 TAAATATCAT
* *
4011885 TTTATTTGTAATATAATTTTATTATAATA
1 TTTATATGTAATAT-ATTTTATTATATTA
*
4011914 TATTATATG-AATATTATTTTATTATATTT
1 T-TTATATGTAATA-TATTTTATTATATTA
*
4011943 TGTTAT-TGTAATATATTAT-TTATATTA
1 T-TTATATGTAATATATTTTATTATATTA
*
4011970 TTTATAT-TTATATATTTGTATATATATT
1 TTTATATGTAATATATTT-TAT-TATATT
4011998 TAGAAAACTA
Statistics
Matches: 69, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
26 12 0.17
27 10 0.14
28 8 0.12
29 32 0.46
30 7 0.10
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (28 bp):
TTTATATGTAATATATTTTATTATATTA
Found at i:4012180 original size:25 final size:22
Alignment explanation
Indices: 4012156--4012199 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
4012146 GTTGAGTTTA
4012156 AAATGATTCAAAATTTATTAATTT
1 AAAT-ATT-AAAATTTATTAATTT
*
4012180 AAATATTAAATTTTATTAAT
1 AAATATTAAAATTTATTAAT
4012200 CTGAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 3 0.16
24 4 0.21
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
AAATATTAAAATTTATTAATTT
Found at i:4013420 original size:31 final size:29
Alignment explanation
Indices: 4013384--4013441 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
4013374 TAAATTTTAA
* *
4013384 AAAAATATTATTTTAATCTTAAAAGATAAGT
1 AAAAATATT-TTTAAAT-TTAAAAAATAAGT
4013415 AAAAATATTTTTAAATTTAAAAAATAA
1 AAAAATATTTTTAAATTTAAAAAATAA
4013442 TAATATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 10 0.40
30 6 0.24
31 9 0.36
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (29 bp):
AAAAATATTTTTAAATTTAAAAAATAAGT
Found at i:4014138 original size:13 final size:13
Alignment explanation
Indices: 4014122--4014146 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4014112 TTTAGGTTTG
4014122 ATTTTTGCCTCTC
1 ATTTTTGCCTCTC
4014135 ATTTTTGCCTCT
1 ATTTTTGCCTCT
4014147 TTGGAGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.08, T:0.56
Consensus pattern (13 bp):
ATTTTTGCCTCTC
Found at i:4020961 original size:46 final size:46
Alignment explanation
Indices: 4020893--4021000 Score: 189
Period size: 46 Copynumber: 2.3 Consensus size: 46
4020883 CTCTCTCCGA
4020893 AGTAATTTTTCTTCTTTTTCAAACTCAAGATTAATTACTGATTACGT
1 AGTAATTTTT-TTCTTTTTCAAACTCAAGATTAATTACTGATTACGT
* *
4020940 AGTAATTTTTTTCTTTTTCAAACTCAAGATTATTTACTGATTTCGT
1 AGTAATTTTTTTCTTTTTCAAACTCAAGATTAATTACTGATTACGT
4020986 AGTAATTTTTTTCTT
1 AGTAATTTTTTTCTT
4021001 CTTTTTTTTT
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
46 49 0.83
47 10 0.17
ACGTcount: A:0.27, C:0.13, G:0.08, T:0.52
Consensus pattern (46 bp):
AGTAATTTTTTTCTTTTTCAAACTCAAGATTAATTACTGATTACGT
Found at i:4023612 original size:3 final size:3
Alignment explanation
Indices: 4023604--4023644 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
4023594 TTGGTTGTCT
4023604 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
4023645 TAAATTGCAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4027358 original size:22 final size:22
Alignment explanation
Indices: 4027330--4027372 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
4027320 GCACAACCTT
*
4027330 AGCATTAAATGCATGAAAAGCA
1 AGCATTAAATGCATCAAAAGCA
*
4027352 AGCATTAAATGCGTCAAAAGC
1 AGCATTAAATGCATCAAAAGC
4027373 TGATCGTCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (22 bp):
AGCATTAAATGCATCAAAAGCA
Found at i:4027518 original size:24 final size:26
Alignment explanation
Indices: 4027485--4027562 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 26
4027475 ACGAATCAAG
4027485 TTAATTATTAATTTTTTAAATATAAT-
1 TTAA-TATTAATTTTTTAAATATAATA
* *
4027511 TT-ATATTAATTTTTAAAAATAAAATA
1 TTAATATTAATTTTT-TAAATATAATA
4027537 TTAATATTAAAATATTTTTAAATATA
1 TTAATATT--AAT-TTTTTAAATATA
4027563 TAAATTTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
24 11 0.26
25 9 0.21
26 4 0.10
27 5 0.12
29 9 0.21
30 4 0.10
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
TTAATATTAATTTTTTAAATATAATA
Found at i:4028997 original size:23 final size:22
Alignment explanation
Indices: 4028951--4028998 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
4028941 TTCCGGTCAA
*
4028951 ATTAAAAATAGTAGTTGGTAAG
1 ATTAAAAATAGTAGTGGGTAAG
*
4028973 ATTAAAAATAGTAGTAGGGTGAG
1 ATTAAAAATAGTAGT-GGGTAAG
4028996 ATT
1 ATT
4028999 GAGTATTGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (22 bp):
ATTAAAAATAGTAGTGGGTAAG
Found at i:4030847 original size:2 final size:2
Alignment explanation
Indices: 4030840--4030875 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
4030830 ACATATACAC
4030840 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4030876 AATTACAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4033023 original size:3 final size:3
Alignment explanation
Indices: 4033015--4033043 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
4033005 TTTACACCAG
4033015 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4033044 AAGAAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4036001 original size:50 final size:50
Alignment explanation
Indices: 4035942--4036201 Score: 423
Period size: 50 Copynumber: 5.2 Consensus size: 50
4035932 TATACTTAGA
*
4035942 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
*
4035992 GTCAACAATTATGGCCACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
*
4036042 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATTT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAA-TC
* *
4036093 GTCAACAATTATGGCCACCTCCTTCTATTGTCAAAGGTTGGTGAAAAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
* * *
4036143 GTCAACAATTATGACCACCTCTCTCTATTGTCAAAGGTTGGTGAATG-ATA
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAA-GAATC
4036193 GTCAACAAT
1 GTCAACAAT
4036202 GATAACAACT
Statistics
Matches: 196, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
50 149 0.76
51 47 0.24
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (50 bp):
GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
Found at i:4036143 original size:101 final size:100
Alignment explanation
Indices: 4035942--4036201 Score: 459
Period size: 101 Copynumber: 2.6 Consensus size: 100
4035932 TATACTTAGA
4035942 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATTGTCAACAATTATGGC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATTGTCAACAATTATGGC
*
4036007 CACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
66 CACCTCCTTCTATTGTCAAAGGTTGGTGAAAAATC
4036042 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATTTGTCAACAATTATGG
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAA-TTGTCAACAATTATGG
4036107 CCACCTCCTTCTATTGTCAAAGGTTGGTGAAAAATC
65 CCACCTCCTTCTATTGTCAAAGGTTGGTGAAAAATC
* * *
4036143 GTCAACAATTATGACCACCTCTCTCTATTGTCAAAGGTTGGTGAATG-ATAGTCAACAAT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAA-GAATTGTCAACAAT
4036202 GATAACAACT
Statistics
Matches: 154, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
100 58 0.38
101 95 0.62
102 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (100 bp):
GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATTGTCAACAATTATGGC
CACCTCCTTCTATTGTCAAAGGTTGGTGAAAAATC
Found at i:4040655 original size:50 final size:50
Alignment explanation
Indices: 4040596--4040855 Score: 423
Period size: 50 Copynumber: 5.2 Consensus size: 50
4040586 TATACTTAGA
*
4040596 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
* *
4040646 GTCAACAATTATGGTCACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
*
4040696 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATTT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAA-TC
*
4040747 GTCAACAATTATGGCCACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
* * *
4040797 GTCAACAATTATGACCACCTCTCTCTATTGTCAAAGGTTGGTGAATG-ATA
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAA-GAATC
4040847 GTCAACAAT
1 GTCAACAAT
4040856 GACAACAACT
Statistics
Matches: 196, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
50 147 0.75
51 49 0.25
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (50 bp):
GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
Found at i:4040795 original size:101 final size:100
Alignment explanation
Indices: 4040596--4040855 Score: 459
Period size: 101 Copynumber: 2.6 Consensus size: 100
4040586 TATACTTAGA
*
4040596 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATTGTCAACAATTATGGT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATTGTCAACAATTATGGC
4040661 CACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
66 CACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
4040696 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATTTGTCAACAATTATGG
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAA-TTGTCAACAATTATGG
4040761 CCACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
65 CCACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
* * *
4040797 GTCAACAATTATGACCACCTCTCTCTATTGTCAAAGGTTGGTGAATG-ATAGTCAACAAT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAA-GAATTGTCAACAAT
4040856 GACAACAACT
Statistics
Matches: 154, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
100 58 0.38
101 95 0.62
102 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (100 bp):
GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATTGTCAACAATTATGGC
CACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
Found at i:4042695 original size:22 final size:21
Alignment explanation
Indices: 4042661--4042708 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
4042651 ACTTAATATT
4042661 TTTAAAATAAAATAATATTTAA
1 TTTAAAATAAAATAAT-TTTAA
* * *
4042683 TTTAAATTTAAATTATTTTAA
1 TTTAAAATAAAATAATTTTAA
*
4042704 ATTAA
1 TTTAA
4042709 TTAATTGAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTAAAATAAAATAATTTTAA
Found at i:4047196 original size:16 final size:17
Alignment explanation
Indices: 4047175--4047208 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
4047165 GTGAGTTTTG
*
4047175 AAATAAAATTA-TATTT
1 AAATAAAAATATTATTT
4047191 AAATAAAAATATTATTT
1 AAATAAAAATATTATTT
4047208 A
1 A
4047209 GGAAAACCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATAAAAATATTATTT
Found at i:4048477 original size:2 final size:2
Alignment explanation
Indices: 4048466--4048495 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
4048456 CTACGTATGG
4048466 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4048496 GCACGAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4048844 original size:6 final size:6
Alignment explanation
Indices: 4048833--4048861 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
4048823 ATTGATTGCT
4048833 ATCTAA ATCTAA ATCTAA ATCTAA ATCTA
1 ATCTAA ATCTAA ATCTAA ATCTAA ATCTA
4048862 TCTGCTGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (6 bp):
ATCTAA
Found at i:4053801 original size:6 final size:6
Alignment explanation
Indices: 4053790--4053816 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
4053780 AATTTGCGAG
4053790 TTCCAA TTCCAA TTCCAA TTCCAA TTC
1 TTCCAA TTCCAA TTCCAA TTCCAA TTC
4053817 TAGATAGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (6 bp):
TTCCAA
Found at i:4053996 original size:2 final size:2
Alignment explanation
Indices: 4053989--4054022 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
4053979 AATGATGTGA
4053989 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4054023 TTGCTTATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4055334 original size:17 final size:18
Alignment explanation
Indices: 4055312--4055345 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
4055302 TTAAAGATGC
4055312 AATTATATT-TTTATTTT
1 AATTATATTATTTATTTT
4055329 AATTATATTATTTATTT
1 AATTATATTATTTATTT
4055346 ATTAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
AATTATATTATTTATTTT
Found at i:4056128 original size:11 final size:11
Alignment explanation
Indices: 4056112--4056147 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
4056102 GATATTTTTC
4056112 TTTCTTTTCTT
1 TTTCTTTTCTT
*
4056123 TTTCTTTTTTT
1 TTTCTTTTCTT
4056134 TTTACTTTTCTT
1 TTT-CTTTTCTT
4056146 TT
1 TT
4056148 GGTGCTGCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 13 0.59
12 9 0.41
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTCTTTTCTT
Found at i:4072086 original size:6 final size:6
Alignment explanation
Indices: 4072075--4072114 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
4072065 TTGCTTGCTT
* * *
4072075 GCTGGG GCTGGG ACTGGA GCTGGG GCTGGG GCTGAG GCTG
1 GCTGGG GCTGGG GCTGGG GCTGGG GCTGGG GCTGGG GCTG
4072115 AGATCGGGAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.07, C:0.17, G:0.57, T:0.17
Consensus pattern (6 bp):
GCTGGG
Found at i:4073844 original size:2 final size:2
Alignment explanation
Indices: 4073837--4073879 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
4073827 ATTGGGAAAC
* *
4073837 AT AT AT AT TT AT A- AT AT AT AT AT AT AT AT AT A- AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4073877 AT A
1 AT A
4073880 ACATATAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4073861 original size:19 final size:19
Alignment explanation
Indices: 4073837--4073879 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
4073827 ATTGGGAAAC
* *
4073837 ATATATATTTATAATATAT
1 ATATATATATATAACATAT
4073856 ATATATATATATAACATAT
1 ATATATATATATAACATAT
4073875 ATATA
1 ATATA
4073880 ACATATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
ATATATATATATAACATAT
Found at i:4073874 original size:11 final size:11
Alignment explanation
Indices: 4073850--4073886 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
4073840 TATATTTATA
*
4073850 ATATATAT-AT
1 ATATATATAAC
4073860 ATATATATAAC
1 ATATATATAAC
4073871 ATATATATAAC
1 ATATATATAAC
4073882 ATATA
1 ATATA
4073887 AATTGTGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (11 bp):
ATATATATAAC
Found at i:4074175 original size:15 final size:14
Alignment explanation
Indices: 4074138--4074175 Score: 53
Period size: 12 Copynumber: 2.8 Consensus size: 14
4074128 TTTAACATAT
4074138 TTTAAAAAT--TAA
1 TTTAAAAATAATAA
4074150 TTTAAAAATAATAA
1 TTTAAAAATAATAA
4074164 TTTAAGAAATAA
1 TTTAA-AAATAA
4074176 AAAAATATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.39
14 8 0.35
15 6 0.26
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (14 bp):
TTTAAAAATAATAA
Found at i:4077392 original size:17 final size:19
Alignment explanation
Indices: 4077354--4077392 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
4077344 TTCTCTTCTC
*
4077354 TTCTCTTCATCTTTCATTT
1 TTCTCCTCATCTTTCATTT
4077373 TTCTCCTCAT-TTTC-TTT
1 TTCTCCTCATCTTTCATTT
4077390 TTC
1 TTC
4077393 ATAAATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 4 0.21
19 9 0.47
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (19 bp):
TTCTCCTCATCTTTCATTT
Found at i:4083342 original size:3 final size:3
Alignment explanation
Indices: 4083334--4083361 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
4083324 TCTTACTTGC
4083334 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
4083362 ATTATCTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:4083673 original size:2 final size:2
Alignment explanation
Indices: 4083666--4083701 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4083656 TATTGCTCCA
4083666 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4083702 TCATACATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4084572 original size:3 final size:3
Alignment explanation
Indices: 4084564--4084615 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
4084554 TGCACAAATT
* *
4084564 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4084612 ATA A
1 ATA A
4084616 AGAGCTTCCC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4084675 original size:4 final size:4
Alignment explanation
Indices: 4084644--4084698 Score: 65
Period size: 4 Copynumber: 13.8 Consensus size: 4
4084634 TAGTACAAGT
* * * * *
4084644 TATA TATC TATC TATC TATC TATC TATA TATA TATA TATA TATA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
4084692 TATA TAT
1 TATA TAT
4084699 TCTACCTGCA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (4 bp):
TATA
Found at i:4086993 original size:71 final size:71
Alignment explanation
Indices: 4086869--4087009 Score: 194
Period size: 71 Copynumber: 2.0 Consensus size: 71
4086859 ACTTGAAATT
* * * * *
4086869 TTATTTGAGAAAAATAAATGTCGAATTACTTAAATCAATCACATTTAGATTTTTTAATAAACAAT
1 TTATTTAAGAAAAACAAATATCGAATCACTTAAATCAATCACATCTAGATTTTTTAATAAACAAT
4086934 ATCATA
66 ATCATA
* * *
4086940 TTATTTAAGAAAAACAAATATTGAATCACTTAAA-CTAATCACGTCTAGGTTTTTTAATAAACAA
1 TTATTTAAGAAAAACAAATATCGAATCACTTAAATC-AATCACATCTAGATTTTTTAATAAACAA
4087004 TATCAT
65 TATCAT
4087010 GTTACAATGA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
70 1 0.02
71 60 0.98
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.37
Consensus pattern (71 bp):
TTATTTAAGAAAAACAAATATCGAATCACTTAAATCAATCACATCTAGATTTTTTAATAAACAAT
ATCATA
Found at i:4088491 original size:2 final size:2
Alignment explanation
Indices: 4088484--4088513 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4088474 ATCTGAATAC
4088484 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4088514 GACTTTCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4089532 original size:7 final size:7
Alignment explanation
Indices: 4089520--4089556 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
4089510 AACAGAATGG
4089520 AAAACAA
1 AAAACAA
4089527 AAAACAA
1 AAAACAA
4089534 AAAACAA
1 AAAACAA
4089541 AAAACAA
1 AAAACAA
4089548 AAAA-AA
1 AAAACAA
4089554 AAA
1 AAA
4089557 GAAATAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAACAA
Found at i:4092093 original size:6 final size:6
Alignment explanation
Indices: 4092082--4092121 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
4092072 TAAGAAAATC
4092082 TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAG
1 TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAG
4092122 GTGTAAGTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (6 bp):
TCAGAT
Found at i:4094716 original size:5 final size:5
Alignment explanation
Indices: 4094706--4094754 Score: 55
Period size: 5 Copynumber: 9.8 Consensus size: 5
4094696 GAGAGAAAGG
* * *
4094706 AAGAA AAGAA AAAAA AAGAA AAAAA AAG-G AAGAAA AAGAA AAGAA AAGA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAG-AA AAGAA AAGAA AAGA
4094755 GAACAAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
4 3 0.08
5 30 0.83
6 3 0.08
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:4094724 original size:10 final size:10
Alignment explanation
Indices: 4094709--4094754 Score: 65
Period size: 10 Copynumber: 4.6 Consensus size: 10
4094699 AGAAAGGAAG
4094709 AAAAGAAAAA
1 AAAAGAAAAA
4094719 AAAAGAAAAA
1 AAAAGAAAAA
* *
4094729 AAAAGGAAGA
1 AAAAGAAAAA
*
4094739 AAAAGAAAAG
1 AAAAGAAAAA
4094749 AAAAGA
1 AAAAGA
4094755 GAACAAATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:4094822 original size:19 final size:19
Alignment explanation
Indices: 4094794--4094857 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 19
4094784 TATCATTTAA
4094794 AATA-TTATAAATTTATAT
1 AATATTTATAAATTTATAT
*
4094812 AATATTTATAAATTT-TTT
1 AATATTTATAAATTTATAT
* * * *
4094830 TATGTTTTTATATTTATAT
1 AATATTTATAAATTTATAT
*
4094849 TATATTTAT
1 AATATTTAT
4094858 TTTTTATATT
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
18 17 0.47
19 19 0.53
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
AATATTTATAAATTTATAT
Found at i:4094846 original size:26 final size:24
Alignment explanation
Indices: 4094828--4094918 Score: 80
Period size: 23 Copynumber: 3.7 Consensus size: 24
4094818 TATAAATTTT
4094828 TTTATGTTTTTATATTTATATTATA
1 TTTAT-TTTTTATATTTATATTATA
*
4094853 TTTATTTTTTATATTT-TATTTTA
1 TTTATTTTTTATATTTATATTATA
* * *
4094876 ATTAATTTTTA-ATATTATGTT-TA
1 TTTATTTTTTATAT-TTATATTATA
4094899 TATTATTTTTTGTATATTTA
1 T-TTA-TTTTT-TATATTTA
4094919 AAGTATTAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
22 2 0.04
23 19 0.35
24 17 0.31
25 9 0.17
26 5 0.09
27 2 0.04
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.69
Consensus pattern (24 bp):
TTTATTTTTTATATTTATATTATA
Found at i:4095032 original size:14 final size:11
Alignment explanation
Indices: 4095001--4095037 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
4094991 TCGTATAGTA
4095001 TTTTTATTATT
1 TTTTTATTATT
*
4095012 TTTTTATTATG
1 TTTTTATTATT
*
4095023 TTTTAATTATT
1 TTTTTATTATT
4095034 TTTT
1 TTTT
4095038 AGTTACGTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (11 bp):
TTTTTATTATT
Found at i:4095343 original size:16 final size:15
Alignment explanation
Indices: 4095310--4095348 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
4095300 TTTTGACATA
4095310 TTTATGTATTTATAT
1 TTTATGTATTTATAT
* *
4095325 TTTATTTATGTTATTT
1 TTTATGTAT-TTATAT
4095341 TTTATGTA
1 TTTATGTA
4095349 GTATTTCCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (15 bp):
TTTATGTATTTATAT
Found at i:4095877 original size:26 final size:27
Alignment explanation
Indices: 4095826--4095885 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
4095816 ATAATTATTT
4095826 AATA-TAATTTAACTTAAATTTATATA
1 AATATTAATTTAACTTAAATTTATATA
*
4095852 ATTATTAATTTAA-TTAAATATT-TATA
1 AATATTAATTTAACTTAAAT-TTATATA
4095878 AATATTAA
1 AATATTAA
4095886 AAATTTCCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (27 bp):
AATATTAATTTAACTTAAATTTATATA
Found at i:4095994 original size:2 final size:2
Alignment explanation
Indices: 4095989--4096025 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
4095979 TTTGTGTGTG
*
4095989 TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4096026 ATTATAAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:4100968 original size:15 final size:16
Alignment explanation
Indices: 4100950--4100986 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
4100940 AAATTTTGTA
4100950 TATTTTTA-TTTTTTT
1 TATTTTTATTTTTTTT
4100965 TATTTTTATTTTTTTT
1 TATTTTTATTTTTTTT
4100981 TATTTT
1 TATTTT
4100987 GTTACTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (16 bp):
TATTTTTATTTTTTTT
Found at i:4100971 original size:16 final size:16
Alignment explanation
Indices: 4100950--4100997 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
4100940 AAATTTTGTA
4100950 TATTTTTA-TTTTTTT
1 TATTTTTACTTTTTTT
*
4100965 TATTTTTATTTTTTTT
1 TATTTTTACTTTTTTT
4100981 TATTTTGTTACTTTTTT
1 TA-TTT-TTACTTTTTT
4100998 ACACCACATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 8 0.28
16 9 0.31
17 3 0.10
18 9 0.31
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (16 bp):
TATTTTTACTTTTTTT
Found at i:4102400 original size:2 final size:2
Alignment explanation
Indices: 4102393--4102427 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4102383 CCATTTTAAG
4102393 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
4102428 CCTTTTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:4103867 original size:2 final size:2
Alignment explanation
Indices: 4103860--4103886 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4103850 TCATGGATAC
4103860 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
4103887 GGTTTCTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4103871 original size:29 final size:29
Alignment explanation
Indices: 4103813--4103871 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
4103803 AATTGAGTGC
* * *
4103813 TCCTATTCTCATTGATATATATGTAGATA
1 TCCTATTCTCATGGATACATATATAGATA
*
4103842 TCCTATTCTCATGGATACATATATATATA
1 TCCTATTCTCATGGATACATATATAGATA
4103871 T
1 T
4103872 ATATATATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.32, C:0.15, G:0.08, T:0.44
Consensus pattern (29 bp):
TCCTATTCTCATGGATACATATATAGATA
Found at i:4108872 original size:14 final size:14
Alignment explanation
Indices: 4108853--4108881 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
4108843 GTGAGGAAGC
4108853 AAAGAGAGAGAGAG
1 AAAGAGAGAGAGAG
4108867 AAAGAGAGAGAGAG
1 AAAGAGAGAGAGAG
4108881 A
1 A
4108882 GAAACAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (14 bp):
AAAGAGAGAGAGAG
Found at i:4109864 original size:14 final size:15
Alignment explanation
Indices: 4109847--4109876 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
4109837 TTTAATTAAA
4109847 AAAATTAAT-AATTT
1 AAAATTAATCAATTT
4109861 AAAATTAATCAATTT
1 AAAATTAATCAATTT
4109876 A
1 A
4109877 TGAATAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATTAATCAATTT
Found at i:4114552 original size:23 final size:25
Alignment explanation
Indices: 4114510--4114557 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 25
4114500 TTAAAGTATA
*
4114510 AAAAATTTATTTTTTTTATTTTTTT
1 AAAAATTTATTTTTTATATTTTTTT
4114535 AAAAA-TTA-TTTTTATATTTTTTT
1 AAAAATTTATTTTTTATATTTTTTT
4114558 GTATCATGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.64
24 3 0.14
25 5 0.23
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (25 bp):
AAAAATTTATTTTTTATATTTTTTT
Found at i:4114760 original size:14 final size:14
Alignment explanation
Indices: 4114731--4114768 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
4114721 CTAAGTAAGA
*
4114731 AATTTA-TTTTATT
1 AATTTATTTTTAAT
4114744 AATTTATTTTTAAT
1 AATTTATTTTTAAT
*
4114758 AATGTATTTTT
1 AATTTATTTTT
4114769 TAAAAGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (14 bp):
AATTTATTTTTAAT
Found at i:4117467 original size:2 final size:2
Alignment explanation
Indices: 4117460--4117523 Score: 68
Period size: 2 Copynumber: 35.0 Consensus size: 2
4117450 TTTCTGTTCT
* *
4117460 TA TA TA TA TA TA TA TA -A TA TA TA TA -A TA TG T- TA CA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4117498 TA TA T- TA TA TA TA T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4117524 GATGAATTAA
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
1 6 0.11
2 47 0.89
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4117481 original size:9 final size:9
Alignment explanation
Indices: 4117460--4117521 Score: 65
Period size: 9 Copynumber: 6.9 Consensus size: 9
4117450 TTTCTGTTCT
4117460 TATATAT-A
1 TATATATAA
4117468 TATATATAA
1 TATATATAA
4117477 TATATATAA
1 TATATATAA
*
4117486 TATGT-TACA
1 TATATATA-A
*
4117495 TATTATATTA
1 TA-TATATAA
*
4117505 TATATATTA
1 TATATATAA
4117514 TATATATA
1 TATATATA
4117522 TAGATGAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
8 9 0.20
9 31 0.67
10 5 0.11
11 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (9 bp):
TATATATAA
Found at i:4121117 original size:31 final size:31
Alignment explanation
Indices: 4121065--4121130 Score: 73
Period size: 31 Copynumber: 2.1 Consensus size: 31
4121055 TGGTAATAGC
* *
4121065 CAATTAATTAAGGGATTATTAT-AGTATAAGT
1 CAATTAATTAAGGGATAATTATGA-TAAAAGT
*
4121096 CAATTAATTGA-GGAGTAATTATGATAAAAGT
1 CAATTAATTAAGGGA-TAATTATGATAAAAGT
4121127 CAAT
1 CAAT
4121131 AGAAAGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
30 3 0.10
31 26 0.87
32 1 0.03
ACGTcount: A:0.44, C:0.05, G:0.17, T:0.35
Consensus pattern (31 bp):
CAATTAATTAAGGGATAATTATGATAAAAGT
Found at i:4122374 original size:33 final size:32
Alignment explanation
Indices: 4122330--4122398 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 32
4122320 CCGTTATAAG
* *
4122330 CAATGTGTCGATACAATTCAT-TATGTATCGATA
1 CAATGTATCGATAC-ATT-ATACATGTATCGATA
4122363 CAATGTATCGATACATTATACCATGTATCGATA
1 CAATGTATCGATACATTATA-CATGTATCGATA
4122396 CAA
1 CAA
4122399 ACAGTGATAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 2 0.06
32 3 0.09
33 27 0.84
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
Consensus pattern (32 bp):
CAATGTATCGATACATTATACATGTATCGATA
Found at i:4122383 original size:20 final size:20
Alignment explanation
Indices: 4122360--4122397 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4122350 TTATGTATCG
4122360 ATACAATGTATCGATACATT
1 ATACAATGTATCGATACATT
*
4122380 ATACCATGTATCGATACA
1 ATACAATGTATCGATACA
4122398 AACAGTGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (20 bp):
ATACAATGTATCGATACATT
Found at i:4122396 original size:13 final size:13
Alignment explanation
Indices: 4122352--4122377 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4122342 ACAATTCATT
4122352 ATGTATCGATACA
1 ATGTATCGATACA
4122365 ATGTATCGATACA
1 ATGTATCGATACA
4122378 TTATACCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4122471 original size:19 final size:18
Alignment explanation
Indices: 4122426--4122483 Score: 89
Period size: 19 Copynumber: 3.1 Consensus size: 18
4122416 ACTGCCGGTT
4122426 TCATGTATCGATACAATTG
1 TCATGTATCGATACAA-TG
4122445 TCCATGTATCGATACAATG
1 T-CATGTATCGATACAATG
4122464 ATCATGTATCGATACAATG
1 -TCATGTATCGATACAATG
4122483 T
1 T
4122484 ATCGATACAA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.03
19 20 0.54
20 16 0.43
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (18 bp):
TCATGTATCGATACAATG
Found at i:4122485 original size:13 final size:13
Alignment explanation
Indices: 4122467--4122506 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
4122457 TACAATGATC
4122467 ATGTATCGATACA
1 ATGTATCGATACA
4122480 ATGTATCGATACA
1 ATGTATCGATACA
4122493 ATGTATCGATACA
1 ATGTATCGATACA
4122506 A
1 A
4122507 AGCATAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4123017 original size:5 final size:5
Alignment explanation
Indices: 4123002--4123051 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
4122992 AGAAGGAAGG
* * *
4123002 AAAGAA AAAGA AAAGA AAACA AAAGA AAGAGG AAAGA AAGGA AAAGA AAA
1 AAAG-A AAAGA AAAGA AAAGA AAAGA AA-AGA AAAGA AAAGA AAAGA AAA
4123052 AAATAATTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
5 29 0.78
6 8 0.22
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:4123027 original size:21 final size:21
Alignment explanation
Indices: 4123002--4123052 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
4122992 AGAAGGAAGG
4123002 AAAGAAAAAGAAAAGAAAACA
1 AAAGAAAAAGAAAAGAAAACA
* * **
4123023 AAAGAAAGAGGAAAGAAAGGA
1 AAAGAAAAAGAAAAGAAAACA
4123044 AAAGAAAAA
1 AAAGAAAAA
4123053 AATAATTATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (21 bp):
AAAGAAAAAGAAAAGAAAACA
Found at i:4124635 original size:2 final size:2
Alignment explanation
Indices: 4124589--4124616 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4124579 TATATTATGC
4124589 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4124617 GAAGGATATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4125166 original size:23 final size:22
Alignment explanation
Indices: 4125119--4125171 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
4125109 TTTTTATCCT
*
4125119 ATTTTAAAAAATCGTTATTTGA
1 ATTTTAAAAAATCGTTATTTAA
*
4125141 ATTTTAAAAAATTGTTATTTAA
1 ATTTTAAAAAATCGTTATTTAA
*
4125163 AATTTAAAA
1 ATTTTAAAA
4125172 TTTAAATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (22 bp):
ATTTTAAAAAATCGTTATTTAA
Found at i:4125555 original size:19 final size:19
Alignment explanation
Indices: 4125514--4125556 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
4125504 AACCAAAATT
* *
4125514 TTTTGTATTTATTATTTGC
1 TTTTATATTTATTATTTGA
4125533 TTTTATATTTATTTATTT-A
1 TTTTATATTTA-TTATTTGA
4125552 TTTTA
1 TTTTA
4125557 GATACGTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (19 bp):
TTTTATATTTATTATTTGA
Found at i:4125754 original size:22 final size:22
Alignment explanation
Indices: 4125726--4125767 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
4125716 CAGGCCTATA
*
4125726 TGCCTAAGTGAAATTTAAAAGT
1 TGCCTAAGTGAAACTTAAAAGT
*
4125748 TGCCTAAGTGAGACTTAAAA
1 TGCCTAAGTGAAACTTAAAA
4125768 ATAAGACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (22 bp):
TGCCTAAGTGAAACTTAAAAGT
Found at i:4129198 original size:52 final size:52
Alignment explanation
Indices: 4129050--4129178 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
4129040 CGAAATATGA
*
4129050 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTGTCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
4129102 AAATTTGCCTGTATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
4129154 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
4129179 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:4129274 original size:13 final size:13
Alignment explanation
Indices: 4129256--4129366 Score: 78
Period size: 13 Copynumber: 7.3 Consensus size: 13
4129246 AGCTTCGTAG
4129256 CGATACATTGTAT
1 CGATACATTGTAT
4129269 CGATACAAGCTTATGTAT
1 CGATAC-A---T-TGTAT
4129287 CGATACATTGTAT
1 CGATACATTGTAT
4129300 CGATACAAGCTTATGTAT
1 CGATAC-A---T-TGTAT
4129318 CGATACATTGTAT
1 CGATACATTGTAT
4129331 CGATACAACACTTATGTAT
1 CGAT---ACA--T-TGTAT
4129350 CGATACATTGTAT
1 CGATACATTGTAT
4129363 CGAT
1 CGAT
4129367 TCAACACTTA
Statistics
Matches: 82, Mismatches: 0, Indels: 32
0.72 0.00 0.28
Matches are distributed among these distances:
13 35 0.43
14 5 0.06
16 6 0.07
17 4 0.05
18 23 0.28
19 9 0.11
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:4129291 original size:31 final size:32
Alignment explanation
Indices: 4129256--4129388 Score: 225
Period size: 31 Copynumber: 4.2 Consensus size: 32
4129246 AGCTTCGTAG
*
4129256 CGATACATTGTATCGATACAA-GCTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
*
4129287 CGATACATTGTATCGATACAA-GCTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
4129318 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
*
4129350 CGATACATTGTATCGATTCAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
4129382 CGATACA
1 CGATACA
4129389 AATCGTTGAA
Statistics
Matches: 99, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
31 52 0.53
32 47 0.47
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:4131801 original size:22 final size:23
Alignment explanation
Indices: 4131764--4131807 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
4131754 CAATTCCAAT
*
4131764 ACTGCATTGAAGAAGTATTAGTA
1 ACTGCATTGAAGAAGTAGTAGTA
4131787 ACTGCATT-AAGAAGTAGTAGT
1 ACTGCATTGAAGAAGTAGTAGT
4131808 TAAAAAGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (23 bp):
ACTGCATTGAAGAAGTAGTAGTA
Found at i:4133731 original size:31 final size:31
Alignment explanation
Indices: 4133653--4133732 Score: 115
Period size: 32 Copynumber: 2.5 Consensus size: 31
4133643 TGACATTGAG
* *
4133653 TTTAGAAGGGTTGTCACCAACTTGTGTGGGC
1 TTTAGAAGGGTTGCCACCAACTTATGTGGGC
* *
4133684 TTTAGAGAAGGTTGCCACCAGCTTATGTGGGC
1 TTTAGA-AGGGTTGCCACCAACTTATGTGGGC
4133716 TTTAGAAGGGTTGCCAC
1 TTTAGAAGGGTTGCCAC
4133733 TGACTTGTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 16 0.37
32 27 0.63
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.30
Consensus pattern (31 bp):
TTTAGAAGGGTTGCCACCAACTTATGTGGGC
Found at i:4133768 original size:28 final size:28
Alignment explanation
Indices: 4133709--4134204 Score: 505
Period size: 28 Copynumber: 17.4 Consensus size: 28
4133699 CACCAGCTTA
* *
4133709 TGTGGGCTTTAGAAGGGTTGCCACTGACT
1 TGTGGGCTTTA-AAAGGATGCCACTGACT
* *
4133738 TGTAGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * ** * *
4133766 TGTGAGATTCGAAAGGGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
4133794 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
4133822 TGTGGGCTTTGAGAGAGATTGCCACCGACT
1 TGTGGGCTTTAAAAG-GA-TGCCACTGACT
*
4133852 TGTGGGCTTTGAGAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * *
4133881 TGTAGGCTTTGAGAGAGGTTGCCACTGACT
1 TGTGGGCTTT-A-AAAGGATGCCACTGACT
4133911 TGTGGGCTTTAAGAAGGATGCCACTGACT
1 TGTGGGCTTTAA-AAGGATGCCACTGACT
*
4133940 CGTGGGCTTTGAAAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* ** *
4133969 CGTGGGCTTTGAAAATAATGCCACCGACTT
1 TGTGGGCTTT-AAAAGGATGCCACTGAC-T
** *
4133999 GTGTGGGCTTCGAAAGGGTGCCACTGACT
1 -TGTGGGCTTTAAAAGGATGCCACTGACT
*
4134028 TGTGAGCTTTAAAAAGG-TGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * * *
4134056 TGTGAGCTTTTAAAGGTTGCCGCTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
4134084 TGTGGGCTTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* *
4134112 TGTGGGCTTTGAAAGGATGCCACTGCCT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
4134140 TGTGGGCTTTGAAAA-G-TGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* *
4134167 TGTGAGCTTTAAAAGGATACCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
4134195 TGTGGGCTTT
1 TGTGGGCTTT
4134205 GGAAAGGTGA
Statistics
Matches: 396, Mismatches: 56, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.01
27 30 0.08
28 182 0.46
29 111 0.28
30 59 0.15
31 10 0.03
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTAAAAGGATGCCACTGACT
Found at i:4135480 original size:10 final size:10
Alignment explanation
Indices: 4135459--4135500 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
4135449 ATCTGGACCC
4135459 TTTTTTGTTTG
1 TTTTTTG-TTG
4135470 TTTTTTGTTG
1 TTTTTTGTTG
4135480 TTTTTT-TTG
1 TTTTTTGTTG
*
4135489 TTTTTTTTTG
1 TTTTTTGTTG
4135499 TT
1 TT
4135501 ACGGAGGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.30
10 14 0.47
11 7 0.23
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (10 bp):
TTTTTTGTTG
Found at i:4135482 original size:14 final size:12
Alignment explanation
Indices: 4135459--4135497 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
4135449 ATCTGGACCC
*
4135459 TTTTTTG-TTTG
1 TTTTTTGTTTTT
*
4135470 TTTTTTGTTGTT
1 TTTTTTGTTTTT
4135482 TTTTTTGTTTTT
1 TTTTTTGTTTTT
4135494 TTTT
1 TTTT
4135498 GTTACGGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 7 0.29
12 17 0.71
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (12 bp):
TTTTTTGTTTTT
Found at i:4135488 original size:19 final size:20
Alignment explanation
Indices: 4135460--4135500 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
4135450 TCTGGACCCT
4135460 TTTTTGTTTGTTTTTTGTTG
1 TTTTTGTTTGTTTTTTGTTG
*
4135480 TTTTT-TTTGTTTTTTTTTG
1 TTTTTGTTTGTTTTTTGTTG
4135499 TT
1 TT
4135501 ACGGAGGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (20 bp):
TTTTTGTTTGTTTTTTGTTG
Found at i:4148234 original size:32 final size:32
Alignment explanation
Indices: 4148193--4148263 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
4148183 AGCTTCGTAG
*
4148193 CGATACATTGTATCGACACAAAATTTATGTAT
1 CGATACATTGTATCGACACAAAACTTATGTAT
* *
4148225 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGACACAAAACTTATGTAT
4148257 CGATACA
1 CGATACA
4148264 AATCGTTGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGACACAAAACTTATGTAT
Found at i:4148238 original size:13 final size:13
Alignment explanation
Indices: 4148220--4148244 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4148210 ACAAAATTTA
4148220 TGTATCGATACAT
1 TGTATCGATACAT
4148233 TGTATCGATACA
1 TGTATCGATACA
4148245 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4152639 original size:20 final size:19
Alignment explanation
Indices: 4152612--4152688 Score: 91
Period size: 20 Copynumber: 3.9 Consensus size: 19
4152602 GTAAAAAGAC
*
4152612 AAAATGTATTGATACATTG
1 AAAATGTATCGATACATTG
*
4152631 AAGAATGTATCGATACATTC
1 AA-AATGTATCGATACATTG
*
4152651 ATACATGTATCGATACATTG
1 A-AAATGTATCGATACATTG
*
4152671 AAAAATATATCGATACAT
1 -AAAATGTATCGATACAT
4152689 CTGGGTAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
19 2 0.04
20 45 0.92
21 2 0.04
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (19 bp):
AAAATGTATCGATACATTG
Found at i:4152748 original size:24 final size:23
Alignment explanation
Indices: 4152658--4152750 Score: 72
Period size: 20 Copynumber: 4.0 Consensus size: 23
4152648 TTCATACATG
4152658 TATCGATACAT-T-G-AAAAATA
1 TATCGATACATCTGGTAAAAATA
4152678 TATCGATACATCTGGGTAAAAGATTGAA
1 TATCGATACATCT-GGTAAAA-A-T--A
4152706 TGTATCGATACA-CT-G-AAAAATA
1 --TATCGATACATCTGGTAAAAATA
4152728 TATCGATACATCTAGGTAAAAAT
1 TATCGATACATCT-GGTAAAAAT
4152751 GTGACTTTTC
Statistics
Matches: 59, Mismatches: 0, Indels: 24
0.71 0.00 0.29
Matches are distributed among these distances:
20 21 0.36
21 3 0.05
22 1 0.02
23 2 0.03
24 11 0.19
25 2 0.03
26 5 0.08
27 1 0.02
28 1 0.02
29 2 0.03
30 10 0.17
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (23 bp):
TATCGATACATCTGGTAAAAATA
Found at i:4153725 original size:22 final size:23
Alignment explanation
Indices: 4153688--4153731 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
4153678 CAATTCCACT
*
4153688 ACTGCATTGAAGAAGTATTAGTA
1 ACTGCATTGAAGAAGTAGTAGTA
4153711 ACTGCATT-AAGAAGTAGTAGT
1 ACTGCATTGAAGAAGTAGTAGT
4153732 TAGAAAGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (23 bp):
ACTGCATTGAAGAAGTAGTAGTA
Found at i:4159591 original size:26 final size:27
Alignment explanation
Indices: 4159562--4159614 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
4159552 TAGTTTTTTG
4159562 TCGAA-AAACAAGGTTGGAGTATCCCC
1 TCGAAGAAACAAGGTTGGAGTATCCCC
**
4159588 TCGAAGAAATGAGGTTGGAGTATCCCC
1 TCGAAGAAACAAGGTTGGAGTATCCCC
4159615 GACAATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (27 bp):
TCGAAGAAACAAGGTTGGAGTATCCCC
Found at i:4161887 original size:33 final size:33
Alignment explanation
Indices: 4161843--4161908 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
4161833 AAATTCCTAG
4161843 ATGTATCGATACAAAG-ATCAATGTATCGATACA
1 ATGTATCGATACAAAGAAT-AATGTATCGATACA
* **
4161876 ATGTATTGATACATTGAATAATGTATCGATACA
1 ATGTATCGATACAAAGAATAATGTATCGATACA
4161909 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.93
34 2 0.07
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (33 bp):
ATGTATCGATACAAAGAATAATGTATCGATACA
Found at i:4161954 original size:13 final size:13
Alignment explanation
Indices: 4161936--4161961 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4161926 AGGGCAGCTT
4161936 TGTATCGATACAA
1 TGTATCGATACAA
4161949 TGTATCGATACAA
1 TGTATCGATACAA
4161962 CACTTATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4168764 original size:23 final size:22
Alignment explanation
Indices: 4168711--4168761 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
4168701 TCATTTACTT
4168711 GCATCAATCTTCACGTTTTTTA
1 GCATCAATCTTCACGTTTTTTA
4168733 GCATCAATCTTCACGTTTTTTA
1 GCATCAATCTTCACGTTTTTTA
*
4168755 GCTTCAA
1 GCATCAA
4168762 ATCAAAGGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.43
Consensus pattern (22 bp):
GCATCAATCTTCACGTTTTTTA
Found at i:4170176 original size:22 final size:25
Alignment explanation
Indices: 4170149--4170202 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 25
4170139 TTTTTATTTC
*
4170149 ATATTATA-AATATAAATG-A-TAA
1 ATATTATACAATACAAATGAATTAA
4170171 ATATTAATACAATACAAATGAATTAA
1 ATATT-ATACAATACAAATGAATTAA
4170197 ATATTA
1 ATATTA
4170203 ATATTCATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 5 0.19
23 3 0.11
24 9 0.33
25 2 0.07
26 8 0.30
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTATACAATACAAATGAATTAA
Found at i:4170203 original size:26 final size:23
Alignment explanation
Indices: 4170149--4170205 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 23
4170139 TTTTTATTTC
*
4170149 ATATT-ATAAATATAAATGATAA
1 ATATTAATAAATACAAATGATAA
4170171 ATATTAATACAATACAAATGAATTAA
1 ATATTAATA-AATACAAATG-A-TAA
4170197 ATATTAATA
1 ATATTAATA
4170206 TTCATCATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 5 0.17
23 3 0.10
24 9 0.30
25 1 0.03
26 12 0.40
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (23 bp):
ATATTAATAAATACAAATGATAA
Found at i:4173589 original size:3 final size:3
Alignment explanation
Indices: 4173581--4173614 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
4173571 TAGGAATTAA
*
4173581 AAT AAT AAT AAT AAT AAC AAT AAT AATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
4173615 TAACAAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:4176974 original size:14 final size:14
Alignment explanation
Indices: 4176957--4176985 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
4176947 CCTCCTTATC
4176957 TTTTCCTTTTTTTT
1 TTTTCCTTTTTTTT
4176971 TTTTCCTTTTTTTT
1 TTTTCCTTTTTTTT
4176985 T
1 T
4176986 CCAGCTACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTCCTTTTTTTT
Found at i:4177081 original size:14 final size:14
Alignment explanation
Indices: 4177046--4177082 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
4177036 CTTAAATAAT
4177046 AATTATATATTTAA
1 AATTATATATTTAA
4177060 AATT-TATATTTAA
1 AATTATATATTTAA
4177073 AATTATATAT
1 AATTATATAT
4177083 CAATTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
AATTATATATTTAA
Found at i:4177999 original size:12 final size:12
Alignment explanation
Indices: 4177979--4178009 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
4177969 AAAATTCTAC
*
4177979 ATAAGAAACAAA
1 ATAAAAAACAAA
4177991 ATAAAAAACAAA
1 ATAAAAAACAAA
4178003 ATAAAAA
1 ATAAAAA
4178010 CTCAACACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.81, C:0.06, G:0.03, T:0.10
Consensus pattern (12 bp):
ATAAAAAACAAA
Found at i:4178139 original size:21 final size:21
Alignment explanation
Indices: 4178108--4178167 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
4178098 TAGGGTTTAG
*
4178108 GATTTGAGGTTTGGATGTTCGA
1 GATTTGAGGTTTGGA-GTTCAA
*
4178130 GATTT-AGGTTCGGAGTTCAA
1 GATTTGAGGTTTGGAGTTCAA
*
4178150 GGTTTGAGGTTTAGGAGT
1 GATTTGAGGTTT-GGAGT
4178168 CTAGGGTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 9 0.28
21 13 0.41
22 10 0.31
ACGTcount: A:0.20, C:0.05, G:0.37, T:0.38
Consensus pattern (21 bp):
GATTTGAGGTTTGGAGTTCAA
Found at i:4178211 original size:7 final size:7
Alignment explanation
Indices: 4178201--4178248 Score: 60
Period size: 7 Copynumber: 6.9 Consensus size: 7
4178191 GGTTTGGGAT
4178201 TTGGGGC
1 TTGGGGC
4178208 TTGGGGC
1 TTGGGGC
**
4178215 TAAGGGC
1 TTGGGGC
*
4178222 TTGAGGC
1 TTGGGGC
4178229 TTGGGGC
1 TTGGGGC
*
4178236 ATGGGGC
1 TTGGGGC
4178243 TTGGGG
1 TTGGGG
4178249 ATCGGGCATC
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.08, C:0.12, G:0.54, T:0.25
Consensus pattern (7 bp):
TTGGGGC
Found at i:4178375 original size:21 final size:21
Alignment explanation
Indices: 4178289--4178452 Score: 97
Period size: 21 Copynumber: 8.0 Consensus size: 21
4178279 TGAGGTTGGG
**
4178289 GAGTTTGGGGTTCGGGGTTT-
1 GAGTTTGGGGTTTAGGGTTTA
*
4178309 GAGTTTAGGGTTTA-GGTTTA
1 GAGTTTGGGGTTTAGGGTTTA
* * *
4178329 G-GATTT-GGATTTAAGGTTTT
1 GAG-TTTGGGGTTTAGGGTTTA
* *
4178349 GGGTTTGGGGTTTAGAGTTTA
1 GAGTTTGGGGTTTAGGGTTTA
***
4178370 GAGTTTAAAGTTTAGGGTTTA
1 GAGTTTGGGGTTTAGGGTTTA
* * *
4178391 GAGTTTGAGG-TAAGGGTTAA
1 GAGTTTGGGGTTTAGGGTTTA
* *
4178411 GGGTTTAGGGTTTTA-GGTTTA
1 GAGTTT-GGGGTTTAGGGTTTA
* *
4178432 GGGTTTAGGGGTTTGGGGTTT
1 GAGTTT-GGGGTTTAGGGTTT
4178453 TGGGGCCTGG
Statistics
Matches: 111, Mismatches: 25, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
19 12 0.11
20 37 0.33
21 55 0.50
22 7 0.06
ACGTcount: A:0.17, C:0.01, G:0.40, T:0.43
Consensus pattern (21 bp):
GAGTTTGGGGTTTAGGGTTTA
Found at i:4178423 original size:27 final size:29
Alignment explanation
Indices: 4178356--4178452 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 29
4178346 TTTGGGTTTG
* * *
4178356 GGGTTTAGAGTTTAGAGTTTAA-AGTTT-A
1 GGGTTTAGGGTTT-GAGGTTAAGGGTTTAA
*
4178384 GGGTTTAGAGTTTGAGG-TAAGGG-TTAA
1 GGGTTTAGGGTTTGAGGTTAAGGGTTTAA
* * *
4178411 GGGTTTAGGGTTTTAGGTTTAGGGTTTAG
1 GGGTTTAGGGTTTGAGGTTAAGGGTTTAA
*
4178440 GGGTTTGGGGTTT
1 GGGTTTAGGGTTT
4178453 TGGGGCCTGG
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
26 5 0.09
27 20 0.34
28 18 0.31
29 15 0.26
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (29 bp):
GGGTTTAGGGTTTGAGGTTAAGGGTTTAA
Found at i:4178427 original size:8 final size:7
Alignment explanation
Indices: 4178311--4178956 Score: 418
Period size: 7 Copynumber: 91.9 Consensus size: 7
4178301 CGGGGTTTGA
4178311 GTTTAGG
1 GTTTAGG
4178318 GTTTA-G
1 GTTTAGG
4178324 GTTTAGG
1 GTTTAGG
*
4178331 ATTT-GG
1 GTTTAGG
* *
4178337 ATTTAAG
1 GTTTAGG
*
4178344 GTTTTGG
1 GTTTAGG
*
4178351 GTTTGGG
1 GTTTAGG
*
4178358 GTTTAGA
1 GTTTAGG
*
4178365 GTTTAGA
1 GTTTAGG
**
4178372 GTTTAAA
1 GTTTAGG
4178379 GTTTAGG
1 GTTTAGG
*
4178386 GTTTAGA
1 GTTTAGG
4178393 GTTT-GAG
1 GTTTAG-G
*
4178400 G-TAAGG
1 GTTTAGG
*
4178406 GTTAAGG
1 GTTTAGG
4178413 GTTTAGG
1 GTTTAGG
4178420 GTTTTA-G
1 G-TTTAGG
4178427 GTTTAGG
1 GTTTAGG
4178434 GTTTAGGG
1 GTTTA-GG
*
4178442 GTTTGGG
1 GTTTAGG
*
4178449 GTTTTGGG
1 G-TTTAGG
** *
4178457 GCCTGGG
1 GTTTAGG
* *
4178464 GTCTGGG
1 GTTTAGG
4178471 GTTTAGG
1 GTTTAGG
** *
4178478 GCCTGGG
1 GTTTAGG
* *
4178485 GTCTGGG
1 GTTTAGG
4178492 GTTTAGG
1 GTTTAGG
*
4178499 GTTTTAAG
1 G-TTTAGG
*
4178507 ATTT-GG
1 GTTTAGG
* *
4178513 GATATGGG
1 G-TTTAGG
4178521 GTTTAGG
1 GTTTAGG
4178528 GTTT-GG
1 GTTTAGG
*
4178534 G-ATATGG
1 GTTTA-GG
4178541 GATTTAGG
1 G-TTTAGG
4178549 GTTTAGG
1 GTTTAGG
*
4178556 GCTTAGG
1 GTTTAGG
* *
4178563 GTCTGGG
1 GTTTAGG
*
4178570 GTCT-GAG
1 GTTTAG-G
* *
4178577 GTCTCGG
1 GTTTAGG
* * *
4178584 GTCTCGT
1 GTTTAGG
* * *
4178591 GTCTCGA
1 GTTTAGG
* * *
4178598 GTGTCGCA
1 GTTTAG-G
* * *
4178606 GTGTCGA
1 GTTTAGG
4178613 GTTTAGG
1 GTTTAGG
*
4178620 GGTTAGG
1 GTTTAGG
4178627 GTTTTAGG
1 G-TTTAGG
4178635 GTTTAGG
1 GTTTAGG
4178642 GTTTTAGG
1 G-TTTAGG
4178650 GTTTA-G
1 GTTTAGG
4178656 GTTTA-G
1 GTTTAGG
4178662 GTTTAGG
1 GTTTAGG
4178669 GTTGCTAGG
1 GTT--TAGG
4178678 GTTTAGG
1 GTTTAGG
4178685 GTTTAGG
1 GTTTAGG
4178692 GTTTAGG
1 GTTTAGG
4178699 GTTTAGG
1 GTTTAGG
4178706 GTTTAGG
1 GTTTAGG
4178713 GTTTAGG
1 GTTTAGG
4178720 G-TTA-G
1 GTTTAGG
4178725 G-TTA-G
1 GTTTAGG
*
4178730 TTTTAGG
1 GTTTAGG
4178737 GTTTAGG
1 GTTTAGG
4178744 GTTTAGG
1 GTTTAGG
4178751 GTTTATTAGG
1 G--T-TTAGG
4178761 TGTTTAGG
1 -GTTTAGG
4178769 GTTTA-G
1 GTTTAGG
4178775 GTTTAGG
1 GTTTAGG
4178782 G--TAGG
1 GTTTAGG
4178787 GTTTAGG
1 GTTTAGG
4178794 GTTTAGG
1 GTTTAGG
4178801 G-TTAGG
1 GTTTAGG
4178807 GTTTAGG
1 GTTTAGG
*
4178814 GTTTA-C
1 GTTTAGG
4178820 GTTTA-G
1 GTTTAGG
4178826 GTTTAGG
1 GTTTAGG
4178833 GTTTGAGG
1 GTTT-AGG
4178841 GTTTA-G
1 GTTTAGG
4178847 GTTTGAGG
1 GTTT-AGG
4178855 GTTTAGG
1 GTTTAGG
*
4178862 GTTTCGG
1 GTTTAGG
4178869 GTTTACGG
1 GTTTA-GG
4178877 GTTTAGG
1 GTTTAGG
4178884 GTTTAGG
1 GTTTAGG
4178891 GTTTAAGG
1 GTTT-AGG
4178899 GATTTAGG
1 G-TTTAGG
4178907 GTTTTAGG
1 G-TTTAGG
4178915 GTTTTAGG
1 G-TTTAGG
*
4178923 GTTGAGG
1 GTTTAGG
*
4178930 GTTTCGG
1 GTTTAGG
4178937 GTTTAGG
1 GTTTAGG
* *
4178944 TTTTCGG
1 GTTTAGG
4178951 GTTTAG
1 GTTTAG
4178957 TGTCGGGGTG
Statistics
Matches: 535, Mismatches: 63, Indels: 82
0.79 0.09 0.12
Matches are distributed among these distances:
5 12 0.02
6 70 0.13
7 337 0.63
8 96 0.18
9 14 0.03
10 5 0.01
11 1 0.00
ACGTcount: A:0.14, C:0.04, G:0.41, T:0.41
Consensus pattern (7 bp):
GTTTAGG
Found at i:4179256 original size:18 final size:17
Alignment explanation
Indices: 4179233--4179510 Score: 101
Period size: 15 Copynumber: 18.0 Consensus size: 17
4179223 GGTATCGGGA
4179233 TTTCCGGGTTATCGGGTT
1 TTTCCGGGTT-TCGGGTT
4179251 TTTCCGGGTTTCCGGGTT
1 TTTCCGGGTTT-CGGGTT
* *
4179269 TTTCAGGGTTTCGGGATA
1 TTTCCGGGTTTCGGG-TT
*
4179287 ATT-CGGG-TTCGGG--
1 TTTCCGGGTTTCGGGTT
* *
4179300 TTT-CGGGTGTCGGGAT
1 TTTCCGGGTTTCGGGTT
4179316 TTT-CGGGTTTTCGGG--
1 TTTCCGGG-TTTCGGGTT
*
4179331 TTT-CGAGGTTTCGGTTT
1 TTTCCG-GGTTTCGGGTT
** *
4179348 CGGTTTTAGGGTTTCGGG-A
1 ---TTTCCGGGTTTCGGGTT
4179367 TTT-CGGGTTTCGGG--
1 TTTCCGGGTTTCGGGTT
4179381 TTT-CGGG-TTCGGG--
1 TTTCCGGGTTTCGGGTT
4179394 TTTCCGGGTTTCGGG--
1 TTTCCGGGTTTCGGGTT
4179409 -TT-CGGGCTTTCGGG--
1 TTTCCGGG-TTTCGGGTT
4179423 TTT-C-GGTTTC-GG--
1 TTTCCGGGTTTCGGGTT
*
4179435 TTT-CGGGTTACGGG--
1 TTTCCGGGTTTCGGGTT
4179449 TTTCCGGGTTTC-GGTAT
1 TTTCCGGGTTTCGGGT-T
*
4179466 ATT-CGGGTTTCGGG-T
1 TTTCCGGGTTTCGGGTT
4179481 TTT-CGGGTTTCGGG--
1 TTTCCGGGTTTCGGGTT
4179495 TTT-CGGGTTTCGGGTT
1 TTTCCGGGTTTCGGGTT
4179511 GCGGGTTTTG
Statistics
Matches: 218, Mismatches: 16, Indels: 54
0.76 0.06 0.19
Matches are distributed among these distances:
12 6 0.03
13 28 0.13
14 48 0.22
15 51 0.23
16 26 0.12
17 18 0.08
18 29 0.13
20 11 0.05
21 1 0.00
ACGTcount: A:0.04, C:0.15, G:0.38, T:0.42
Consensus pattern (17 bp):
TTTCCGGGTTTCGGGTT
Found at i:4179732 original size:27 final size:27
Alignment explanation
Indices: 4179702--4179807 Score: 88
Period size: 27 Copynumber: 3.7 Consensus size: 27
4179692 CCGTGTCTTC
*
4179702 GGGCTTCGGGCTTCGGGCTTAGGGCTA
1 GGGCTTCGGGCTTAGGGCTTAGGGCTA
* * *
4179729 GGGCCTCGTGCTTAGGGCTTAGGGCTTTC
1 GGGCTTCGGGCTTAGGGCTTAGGGC--TA
*
4179758 GGGCTTTCAGGGCTTAGGGCCTTTAGGGCTT
1 GGGC-TTC-GGGCTTAGGG-C-TTAGGGCTA
* *
4179789 GGGGTT-GGGCTTGGGGCTT
1 GGGCTTCGGGCTTAGGGCTT
4179808 GGGGTTTGGG
Statistics
Matches: 64, Mismatches: 9, Indels: 13
0.74 0.10 0.15
Matches are distributed among these distances:
26 2 0.03
27 23 0.36
28 9 0.14
29 5 0.08
30 4 0.06
31 13 0.20
32 1 0.02
33 7 0.11
ACGTcount: A:0.07, C:0.20, G:0.43, T:0.30
Consensus pattern (27 bp):
GGGCTTCGGGCTTAGGGCTTAGGGCTA
Found at i:4179772 original size:9 final size:8
Alignment explanation
Indices: 4179740--4179788 Score: 57
Period size: 8 Copynumber: 6.1 Consensus size: 8
4179730 GGCCTCGTGC
4179740 TTAGGGC-
1 TTAGGGCT
4179747 TTAGGGCT
1 TTAGGGCT
*
4179755 TTCGGGCT
1 TTAGGGCT
4179763 TTCAGGGC-
1 TT-AGGGCT
4179771 TTAGGGCCT
1 TTAGGG-CT
4179780 TTAGGGCT
1 TTAGGGCT
4179788 T
1 T
4179789 GGGGTTGGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
7 11 0.31
8 15 0.42
9 10 0.28
ACGTcount: A:0.10, C:0.18, G:0.37, T:0.35
Consensus pattern (8 bp):
TTAGGGCT
Found at i:4180793 original size:47 final size:46
Alignment explanation
Indices: 4180730--4180839 Score: 132
Period size: 47 Copynumber: 2.4 Consensus size: 46
4180720 GGAGTTATCA
* *
4180730 GTTTCGGAATTGCGGGTGTCGAG-GTCCCGAGGGTTTCGGGATTCGG
1 GTTTCGGAGTTTCGGGTGTCG-GCGTCCCGAGGGTTTCGGGATTCGG
* ** * *
4180776 GTTTCGGAGTTTTCGGGTTTCGGCGTTTCGGGGGTTTCGGGTTTCGG
1 GTTTCGGAG-TTTCGGGTGTCGGCGTCCCGAGGGTTTCGGGATTCGG
4180823 GTTTCGGAGTTTCGGGT
1 GTTTCGGAGTTTCGGGT
4180840 TTTCGGGTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 17 0.31
47 38 0.69
ACGTcount: A:0.06, C:0.15, G:0.43, T:0.35
Consensus pattern (46 bp):
GTTTCGGAGTTTCGGGTGTCGGCGTCCCGAGGGTTTCGGGATTCGG
Found at i:4182657 original size:6 final size:7
Alignment explanation
Indices: 4178853--4189514 Score: 7667
Period size: 7 Copynumber: 1454.0 Consensus size: 7
4178843 TTAGGTTTGA
*
4178853 GGGTTTA
1 GGGTTTC
4178860 GGGTTTC
1 GGGTTTC
4178867 GGGTTTAC
1 GGGTTT-C
*
4178875 GGGTTTA
1 GGGTTTC
*
4178882 GGGTTTA
1 GGGTTTC
*
4178889 GGGTTTAA
1 GGGTTT-C
*
4178897 GGGATTTA
1 GGG-TTTC
*
4178905 GGGTTTTA
1 GGG-TTTC
*
4178913 GGGTTTTA
1 GGG-TTTC
**
4178921 GGGTTGA
1 GGGTTTC
4178928 GGGTTTC
1 GGGTTTC
*
4178935 GGGTTTA
1 GGGTTTC
*
4178942 GGTTTTC
1 GGGTTTC
4178949 GGGTTT-
1 GGGTTTC
* *
4178955 -AGTGTC
1 GGGTTTC
*
4178961 GGGGTGTGC
1 -GGGT-TTC
*
4178970 GGGGTTC
1 GGGTTTC
4178977 GGGTTTTC
1 GGG-TTTC
4178985 GGGTTTC
1 GGGTTTC
4178992 GGGTTATC
1 GGGTT-TC
**
4179000 GTTTTTC
1 GGGTTTC
*
4179007 GGGGTTC
1 GGGTTTC
*
4179014 --GTTTA
1 GGGTTTC
4179019 GGGTTTC
1 GGGTTTC
4179026 GGG-TTC
1 GGGTTTC
*
4179032 AGGTTTC
1 GGGTTTC
4179039 GGGTTTAC
1 GGGTTT-C
4179047 GGGTTTC
1 GGGTTTC
4179054 GAGGTTTTC
1 G-GG-TTTC
4179063 GGGTTTC
1 GGGTTTC
4179070 GGG-TTC
1 GGGTTTC
* *
4179076 GGTTTTAG
1 GGGTTT-C
4179084 GGGTTTC
1 GGGTTTC
4179091 GGGTTTC
1 GGGTTTC
4179098 GGGTTTC
1 GGGTTTC
4179105 GGGTTTC
1 GGGTTTC
4179112 GGGTTTC
1 GGGTTTC
*
4179119 GGGGTTC
1 GGGTTTC
4179126 GGGTTTC
1 GGGTTTC
4179133 GGAGTTTC
1 GG-GTTTC
4179141 GGGTTTC
1 GGGTTTC
4179148 GGGTTTTC
1 GGG-TTTC
4179156 GGGGTTTC
1 -GGGTTTC
4179164 GGGTTTAC
1 GGGTTT-C
4179172 GGGTTTC
1 GGGTTTC
*
4179179 GGGTGTC
1 GGGTTTC
*
4179186 GGGGTATC
1 -GGGTTTC
4179194 GGGGTTTC
1 -GGGTTTC
4179202 GGG-TTC
1 GGGTTTC
4179208 GGGTTTTC
1 GGG-TTTC
4179216 -GGTTTC
1 GGGTTTC
*
4179222 GGGTATC
1 GGGTTTC
4179229 GGGATTTCC
1 GGG-TTT-C
4179238 GGGTTATC
1 GGGTT-TC
4179246 GGGTTTTTCC
1 GGG--TTT-C
4179256 GGGTTTCC
1 GGGTTT-C
4179264 GGGTTTTTC
1 GGG--TTTC
4179273 AGGGTTTC
1 -GGGTTTC
4179281 GGGATAATTC
1 GGG-T--TTC
4179291 GGG-TTC
1 GGGTTTC
4179297 GGGTTTC
1 GGGTTTC
*
4179304 GGGTGTC
1 GGGTTTC
4179311 GGGATTTTC
1 GGG--TTTC
4179320 GGGTTTTC
1 GGG-TTTC
4179328 GGGTTTC
1 GGGTTTC
4179335 GAGGTTTC
1 G-GGTTTC
4179343 -GGTTTC
1 GGGTTTC
* *
4179349 GGTTTTA
1 GGGTTTC
4179356 GGGTTTC
1 GGGTTTC
4179363 GGGATTTC
1 GGG-TTTC
4179371 GGGTTTC
1 GGGTTTC
4179378 GGGTTTC
1 GGGTTTC
4179385 GGG-TTC
1 GGGTTTC
4179391 GGGTTTCC
1 GGGTTT-C
4179399 GGGTTTC
1 GGGTTTC
4179406 GGG-TTC
1 GGGTTTC
4179412 GGGCTTTC
1 GGG-TTTC
4179420 GGGTTTC
1 GGGTTTC
4179427 -GGTTTC
1 GGGTTTC
4179433 -GGTTTC
1 GGGTTTC
*
4179439 GGGTTAC
1 GGGTTTC
4179446 GGGTTTCC
1 GGGTTT-C
4179454 GGGTTTC
1 GGGTTTC
*
4179461 GGTATATTC
1 GG-GT-TTC
4179470 GGGTTTC
1 GGGTTTC
4179477 GGGTTTTC
1 GGG-TTTC
4179485 GGGTTTC
1 GGGTTTC
4179492 GGGTTTC
1 GGGTTTC
4179499 GGGTTTC
1 GGGTTTC
*
4179506 GGGTTGC
1 GGGTTTC
*
4179513 GGGTTTT
1 GGGTTTC
4179520 GGG--TC
1 GGGTTTC
4179525 GGGATTTC
1 GGG-TTTC
4179533 TGGGTTTC
1 -GGGTTTC
4179541 -GGTTTC
1 GGGTTTC
4179547 -GGTTTAC
1 GGGTTT-C
4179554 GGGTTTC
1 GGGTTTC
*
4179561 GGGGTTC
1 GGGTTTC
4179568 AGGGTTTC
1 -GGGTTTC
4179576 GGGTTTTC
1 GGG-TTTC
4179584 GGGGGATTTC
1 --GGG-TTTC
4179594 GGGTATTC
1 GGGT-TTC
4179602 GGGTTTC
1 GGGTTTC
4179609 GGGTTTC
1 GGGTTTC
4179616 GGGTTT-
1 GGGTTTC
* *
4179622 AGTTTTC
1 GGGTTTC
*
4179629 GGGCTTC
1 GGGTTTC
4179636 AGGGCGTTTC
1 --GG-GTTTC
******
4179646 CCCCCCC
1 GGGTTTC
*******
4179653 AAAAAAG
1 GGGTTTC
*
4179660 GGGCTTC
1 GGGTTTC
**
4179667 GGGCTTAA
1 GGG-TTTC
* *
4179675 GGGCTTA
1 GGGTTTC
*
4179682 GGG-CT-
1 GGGTTTC
* **
4179687 GCGTGCC
1 GGGTTTC
*
4179694 GTGTCTTC
1 GGGT-TTC
*
4179702 GGGCTTC
1 GGGTTTC
*
4179709 GGGCTTC
1 GGGTTTC
* *
4179716 GGGCTTA
1 GGGTTTC
* *
4179723 GGG-CTA
1 GGGTTTC
**
4179729 GGGCCTC
1 GGGTTTC
* * *
4179736 GTGCTTA
1 GGGTTTC
* *
4179743 GGGCTTA
1 GGGTTTC
4179750 GGGCTTTC
1 GGG-TTTC
4179758 GGGCTTTC
1 GGG-TTTC
* *
4179766 AGGGCTTA
1 -GGGTTTC
*
4179774 GGGCCTTTA
1 GGG--TTTC
*
4179783 GGGCTT-
1 GGGTTTC
*
4179789 GGGGTT-
1 GGGTTTC
* *
4179795 GGGCTTG
1 GGGTTTC
* *
4179802 GGGCTTG
1 GGGTTTC
4179809 GGGTTT-
1 GGGTTTC
* *
4179815 GGGGTTG
1 GGGTTTC
*
4179822 GGGTTTG
1 GGGTTTC
4179829 GGGTTT-
1 GGGTTTC
* *
4179835 GGGGTTG
1 GGGTTTC
4179842 GGGTTT-
1 GGGTTTC
*
4179848 GGGTTTAAG
1 GGGTTT--C
*
4179857 GGGTTTT
1 GGGTTTC
* *
4179864 GGGGTTG
1 GGGTTTC
4179871 GGGTTT-
1 GGGTTTC
*
4179877 GGGTTTG
1 GGGTTTC
4179884 GGGTTT-
1 GGGTTTC
*
4179890 GGGTTTT
1 GGGTTTC
*
4179897 GGGTTTG
1 GGGTTTC
*
4179904 GGGTTTG
1 GGGTTTC
*
4179911 GGGTTATG
1 GGGTT-TC
*
4179919 GGGTTTTG
1 GGG-TTTC
* *
4179927 GGGGTTG
1 GGGTTTC
*
4179934 GGGTTTAG
1 GGGTTT-C
*
4179942 GGGTTTG
1 GGGTTTC
**
4179949 GGGTTGG
1 GGGTTTC
*
4179956 GGGTTATG
1 GGGTT-TC
4179964 GGGTTT-
1 GGGTTTC
* *
4179970 --TTTTG
1 GGGTTTC
*
4179975 GGGTTTTTTG
1 GGG---TTTC
*
4179985 GGGATTTG
1 GGG-TTTC
*
4179993 GGGTTTTG
1 GGG-TTTC
4180001 GGGTTT-
1 GGGTTTC
*
4180007 GGGTTTG
1 GGGTTTC
4180014 GGGTTT-
1 GGGTTTC
* *
4180020 GGGGTTG
1 GGGTTTC
* *
4180027 GGGGTTG
1 GGGTTTC
*
4180034 GGGTTTG
1 GGGTTTC
*
4180041 GGGTTTG
1 GGGTTTC
*
4180048 GGAGTTTG
1 GG-GTTTC
*
4180056 GGGTTTG
1 GGGTTTC
*
4180063 GGGTATTG
1 GGGT-TTC
*
4180071 GGGTGTTG
1 GGGT-TTC
*
4180079 GGGTTTT
1 GGGTTTC
*
4180086 GGGTGTTG
1 GGGT-TTC
*
4180094 GGGTTTG
1 GGGTTTC
*
4180101 GGGTTTTG
1 GGG-TTTC
*
4180109 GGGTTTG
1 GGGTTTC
*
4180116 GGGTTTG
1 GGGTTTC
*
4180123 GGGTTTGG
1 GGGTTT-C
*
4180131 GTGGTTTTG
1 G-GG-TTTC
*
4180140 GGGTTTG
1 GGGTTTC
*
4180147 GGGTTTT
1 GGGTTTC
*
4180154 GGGTTGGTT
1 GGGTT--TC
*
4180163 GGGTTTG
1 GGGTTTC
*
4180170 GGGTTTT
1 GGGTTTC
*
4180177 GGG-GTC
1 GGGTTTC
*
4180183 TGGGTTTG
1 -GGGTTTC
*
4180191 GGGTTTG
1 GGGTTTC
4180198 GGGTTT-
1 GGGTTTC
*
4180204 GGGGTT-
1 GGGTTTC
4180210 GGG-TT-
1 GGGTTTC
*
4180215 GGG-TTG
1 GGGTTTC
*
4180221 GGTGTTTTG
1 GG-G-TTTC
*
4180230 GGGTTTTG
1 GGG-TTTC
*
4180238 GGGTTTG
1 GGGTTTC
*
4180245 GGCGTTTG
1 GG-GTTTC
*
4180253 GGGTTTG
1 GGGTTTC
*
4180260 GGGTTTTT
1 GGG-TTTC
4180268 GGGTTT-
1 GGGTTTC
*
4180274 GGGTTTG
1 GGGTTTC
*
4180281 GGGTTTG
1 GGGTTTC
4180288 GGGTTT-
1 GGGTTTC
*
4180294 GGGTTTG
1 GGGTTTC
*
4180301 GGGTTTG
1 GGGTTTC
*
4180308 GGGTGT-
1 GGGTTTC
*
4180314 GGTGTTTGG
1 GG-GTTT-C
4180323 GGGTTT-
1 GGGTTTC
4180329 GGG-TT-
1 GGGTTTC
**
4180334 -GGTTGG
1 GGGTTTC
*
4180340 GGTGTTTG
1 GG-GTTTC
*
4180348 GGGTTTG
1 GGGTTTC
*
4180355 GGGTTTG
1 GGGTTTC
*
4180362 GGGTTTG
1 GGGTTTC
*
4180369 GGGTTTTT
1 GGG-TTTC
4180377 GGG-TT-
1 GGGTTTC
*
4180382 GGGGTT-
1 GGGTTTC
*
4180388 GGGTTTGG
1 GGGTTT-C
*
4180396 GGGTTTG
1 GGGTTTC
*
4180403 GGGTTTG
1 GGGTTTC
4180410 GGGTTT-
1 GGGTTTC
* *
4180416 GTGTTTG
1 GGGTTTC
*
4180423 GGGTTTG
1 GGGTTTC
4180430 GGGTTT-
1 GGGTTTC
*
4180436 GGG-TTG
1 GGGTTTC
4180442 GGGTTT-
1 GGGTTTC
* *
4180448 GGG-GTG
1 GGGTTTC
* *
4180454 GGGGTTG
1 GGGTTTC
*
4180461 GGGTTTGG
1 GGGTTT-C
*
4180469 GGGTTTG
1 GGGTTTC
4180476 GGGTTTC
1 GGGTTTC
*
4180483 GGGTTTG
1 GGGTTTC
*
4180490 GGGTTTG
1 GGGTTTC
*
4180497 GGGTTTTG
1 GGG-TTTC
4180505 GGGTTTC
1 GGGTTTC
4180512 GGGTTTC
1 GGGTTTC
4180519 -GGTTTC
1 GGGTTTC
4180525 GGGTTTC
1 GGGTTTC
4180532 GGGTTTC
1 GGGTTTC
4180539 GGGTTTC
1 GGGTTTC
4180546 GGGTTTC
1 GGGTTTC
4180553 GGGTTTC
1 GGGTTTC
*
4180560 AGGTATTC
1 GGGT-TTC
4180568 GGGGTTTC
1 -GGGTTTC
4180576 GGAAGTCTTC
1 GG--GT-TTC
4180586 GTAGG-TTC
1 G--GGTTTC
*
4180594 GGGCTAGTC
1 GGG-T-TTC
4180603 GGGTAGTTC
1 GGGT--TTC
4180612 GGGTATTTC
1 GGG--TTTC
4180621 GGGGTATTTC
1 -GGG--TTTC
4180631 GGGTTTC
1 GGGTTTC
4180638 GGGTTTC
1 GGGTTTC
4180645 GGGTTTC
1 GGGTTTC
4180652 GGGTTTTAC
1 GGG-TTT-C
4180661 GGG-TTC
1 GGGTTTC
4180667 GGGTTTC
1 GGGTTTC
4180674 GGGTTATTTC
1 GGG---TTTC
4180684 GGGTTTC
1 GGGTTTC
*
4180691 GGGTGTC
1 GGGTTTC
4180698 GGGTTTC
1 GGGTTTC
4180705 GGGTTTGC
1 GGGTTT-C
4180713 GGGTTTC
1 GGGTTTC
4180720 GGAGTTATC
1 GG-GTT-TC
*
4180729 -AGTTTC
1 GGGTTTC
* *
4180735 GGAATTGC
1 GG-GTTTC
*
4180743 GGGTGTC
1 GGGTTTC
**
4180750 GAGGTCCC
1 G-GGTTTC
4180758 GAGGGTTTC
1 --GGGTTTC
*
4180767 GGGATTC
1 GGGTTTC
4180774 GGGTTTC
1 GGGTTTC
4180781 GGAGTTTTC
1 GG-G-TTTC
4180790 GGGTTTC
1 GGGTTTC
4180797 GGCGTTTC
1 GG-GTTTC
4180805 GGGGGTTTC
1 --GGGTTTC
4180814 GGGTTTC
1 GGGTTTC
4180821 GGGTTTC
1 GGGTTTC
4180828 GGAGTTTC
1 GG-GTTTC
4180836 GGGTTTTC
1 GGG-TTTC
4180844 GGGTTTC
1 GGGTTTC
4180851 -GGTTTC
1 GGGTTTC
4180857 GGGATTTC
1 GGG-TTTC
4180865 GGGGTTTC
1 -GGGTTTC
4180873 GGGTTT-
1 GGGTTTC
4180879 GGGTTTC
1 GGGTTTC
4180886 -GGTTTC
1 GGGTTTC
*
4180892 TCGGTATTAC
1 -GGGT-TT-C
4180902 GGGTTTC
1 GGGTTTC
4180909 GGGTTATC
1 GGGTT-TC
4180917 -GGTTTGC
1 GGGTTT-C
4180924 GGGTTTC
1 GGGTTTC
4180931 GGGTTATC
1 GGGTT-TC
4180939 GGGTTTTC
1 GGG-TTTC
*
4180947 GGGTTTA
1 GGGTTTC
4180954 GGGTTTTC
1 GGG-TTTC
4180962 GGGTTTC
1 GGGTTTC
4180969 GGGTTTTC
1 GGG-TTTC
4180977 GGGTTT-
1 GGGTTTC
4180983 GGGTTTC
1 GGGTTTC
4180990 --GTTTC
1 GGGTTTC
4180995 GGGTTTC
1 GGGTTTC
4181002 GGGTTTC
1 GGGTTTC
4181009 GGGTTTC
1 GGGTTTC
4181016 GAGG-TTC
1 G-GGTTTC
*
4181023 -GTTGTTC
1 GGGT-TTC
4181030 AGGGTTTC
1 -GGGTTTC
4181038 -GGTTATC
1 GGGTT-TC
4181045 GGG-TTC
1 GGGTTTC
4181051 GGGTTTTC
1 GGG-TTTC
4181059 GGGTTTC
1 GGGTTTC
4181066 GGGTTTC
1 GGGTTTC
4181073 GGGTTTTC
1 GGG-TTTC
4181081 GGGTTTTC
1 GGG-TTTC
*
4181089 GGGTTTA
1 GGGTTTC
4181096 GGGTTTC
1 GGGTTTC
4181103 GGGTTTC
1 GGGTTTC
*
4181110 GGGTTTA
1 GGGTTTC
*
4181117 GGGTTGC
1 GGGTTTC
4181124 AGGGTTTC
1 -GGGTTTC
4181132 GAGGTTTC
1 G-GGTTTC
* *
4181140 TGTTTTC
1 GGGTTTC
4181147 GGGGTTGTCC
1 -GGGTT-T-C
4181157 GGGTTTC
1 GGGTTTC
4181164 GGGTGTTC
1 GGGT-TTC
4181172 GGGTTTC
1 GGGTTTC
4181179 GGGTTTC
1 GGGTTTC
4181186 GGGTTTC
1 GGGTTTC
4181193 GGGTTTC
1 GGGTTTC
4181200 -GGTATTC
1 GGGT-TTC
4181207 -GGTTTC
1 GGGTTTC
4181213 GGGTTTC
1 GGGTTTC
4181220 GGGTTTC
1 GGGTTTC
4181227 AGGGTTTC
1 -GGGTTTC
4181235 GGGTTTTC
1 GGG-TTTC
4181243 -GGTTTC
1 GGGTTTC
4181249 GGGTTTC
1 GGGTTTC
4181256 GGGTTTC
1 GGGTTTC
4181263 AGAGGTTTC
1 -G-GGTTTC
4181272 GGGTTATC
1 GGGTT-TC
4181280 GGG-TTC
1 GGGTTTC
4181286 GGG-TTC
1 GGGTTTC
4181292 GGGTTTC
1 GGGTTTC
4181299 -GGTTTGAC
1 GGGTTT--C
4181307 GGGTTTC
1 GGGTTTC
4181314 GAGGTTTC
1 G-GGTTTC
4181322 GGGTTTC
1 GGGTTTC
4181329 GGGTATTGC
1 GGGT-TT-C
4181338 GGGTTTC
1 GGGTTTC
4181345 GGGTTATC
1 GGGTT-TC
4181353 GGGTTTCC
1 GGGTTT-C
4181361 GGGTTTC
1 GGGTTTC
*
4181368 GGGTTGC
1 GGGTTTC
4181375 -GGTTTC
1 GGGTTTC
4181381 GGGGTTTC
1 -GGGTTTC
4181389 GGGTTTCC
1 GGGTTT-C
4181397 GGGTTGTC
1 GGGTT-TC
4181405 GGGTTTC
1 GGGTTTC
4181412 GGGTTTC
1 GGGTTTC
*
4181419 GGTTTTC
1 GGGTTTC
4181426 GGGTATTC
1 GGGT-TTC
4181434 -GGTTTC
1 GGGTTTC
4181440 GGGTTTTC
1 GGG-TTTC
4181448 -GGTTTC
1 GGGTTTC
4181454 GGGTTTATC
1 GGG-TT-TC
*
4181463 GGGTTGC
1 GGGTTTC
4181470 GGGTTTC
1 GGGTTTC
4181477 GGGTTTC
1 GGGTTTC
4181484 -GGTTTAC
1 GGGTTT-C
4181491 AGGGTTTC
1 -GGGTTTC
4181499 GGGTTTC
1 GGGTTTC
4181506 GGGTGTTC
1 GGGT-TTC
4181514 AGGGTTTTC
1 -GGG-TTTC
*
4181523 -GGTTTA
1 GGGTTTC
4181529 GGG-TTC
1 GGGTTTC
4181535 GGGTTTC
1 GGGTTTC
4181542 GGGTATTC
1 GGGT-TTC
4181550 GGG-TTC
1 GGGTTTC
4181556 GGGTGTTC
1 GGGT-TTC
*
4181564 TGG---C
1 GGGTTTC
4181568 GGGTTTC
1 GGGTTTC
4181575 GGGTTTC
1 GGGTTTC
*
4181582 GAGTTTC
1 GGGTTTC
4181589 GGGTTTC
1 GGGTTTC
*
4181596 GGGTGTAC
1 GGGT-TTC
4181604 GGGTTTTC
1 GGG-TTTC
4181612 GGGTTTC
1 GGGTTTC
4181619 AGGGATTGTC
1 -GGG-TT-TC
4181629 GGG-TTC
1 GGGTTTC
4181635 GGGTATTC
1 GGGT-TTC
*
4181643 GGTTTTAC
1 GGGTTT-C
4181651 GGGTTTTC
1 GGG-TTTC
4181659 GGAAGTTTC
1 GG--GTTTC
4181668 GGGTTTC
1 GGGTTTC
4181675 GAGGTATTC
1 G-GGT-TTC
4181684 GGGTTTC
1 GGGTTTC
4181691 GGGTTTAC
1 GGGTTT-C
4181699 GGG-TTC
1 GGGTTTC
4181705 GGGTTTC
1 GGGTTTC
4181712 GGG-TTC
1 GGGTTTC
4181718 GAGGTTTC
1 G-GGTTTC
4181726 GTGGTTTC
1 G-GGTTTC
4181734 GGAGGTTGTC
1 -G-GGTT-TC
4181744 GGGTTTC
1 GGGTTTC
4181751 GGGTTTC
1 GGGTTTC
4181758 GGGTTTC
1 GGGTTTC
4181765 GGAGTTTC
1 GG-GTTTC
4181773 GGGTTTTC
1 GGG-TTTC
*
4181781 GAGGGTATC
1 --GGGTTTC
4181790 GGG-TTC
1 GGGTTTC
4181796 GGGTTTC
1 GGGTTTC
4181803 GGGTTTC
1 GGGTTTC
4181810 GGGTTT-
1 GGGTTTC
4181816 GAGGTTATC
1 G-GGTT-TC
4181825 GGGTTTTC
1 GGG-TTTC
*
4181833 -GGTTCC
1 GGGTTTC
4181839 GGGTTTC
1 GGGTTTC
4181846 -GGTTTC
1 GGGTTTC
4181852 GGGTTTC
1 GGGTTTC
4181859 GGAGTTTC
1 GG-GTTTC
4181867 GGGTTTAAC
1 GGGTTT--C
4181876 AGGAGTTTC
1 -GG-GTTTC
4181885 GGGGTTTC
1 -GGGTTTC
4181893 AGGGTTTC
1 -GGGTTTC
4181901 GGG-TTC
1 GGGTTTC
4181907 AGGGTTTC
1 -GGGTTTC
*
4181915 GGAGTTGC
1 GG-GTTTC
4181923 GGGTTTTC
1 GGG-TTTC
4181931 GGGTTGTC
1 GGGTT-TC
4181939 GGGTTTC
1 GGGTTTC
4181946 GGGTTTC
1 GGGTTTC
4181953 GGGGTTT-
1 -GGGTTTC
* *
4181960 GGGGTAC
1 GGGTTTC
4181967 -GGTTTC
1 GGGTTTC
4181973 GGGGTTTTAC
1 -GGG-TTT-C
4181983 GGGTTTTC
1 GGG-TTTC
4181991 GGGTTTC
1 GGGTTTC
4181998 GGG-TTC
1 GGGTTTC
4182004 GGGTTTC
1 GGGTTTC
4182011 GGGTTTTTC
1 GGG--TTTC
*
4182020 GGTTTTC
1 GGGTTTC
4182027 -GGTTTC
1 GGGTTTC
4182033 GGGTTTTC
1 GGG-TTTC
4182041 GGGGTGTTC
1 -GGGT-TTC
4182050 -GGTATTC
1 GGGT-TTC
4182057 GCGGTTTC
1 G-GGTTTC
4182065 GAGGTTTC
1 G-GGTTTC
*
4182073 GGG-TGC
1 GGGTTTC
4182079 GGGTTTC
1 GGGTTTC
4182086 GGGTTTC
1 GGGTTTC
4182093 GGG-TTC
1 GGGTTTC
4182099 GGGGTTTC
1 -GGGTTTC
4182107 GTGGTTTC
1 G-GGTTTC
4182115 GGGTTTTC
1 GGG-TTTC
4182123 GGGATTGTC
1 GGG-TT-TC
4182132 GGGTTTC
1 GGGTTTC
4182139 GGGGTTTC
1 -GGGTTTC
*
4182147 GGGTTGC
1 GGGTTTC
*
4182154 GGGTTGC
1 GGGTTTC
4182161 GGGTTTC
1 GGGTTTC
4182168 AGGGTTTC
1 -GGGTTTC
4182176 GGGTTT-
1 GGGTTTC
4182182 GGGTTTC
1 GGGTTTC
4182189 GGGTTTC
1 GGGTTTC
4182196 GGGTATTC
1 GGGT-TTC
4182204 GGGTTTC
1 GGGTTTC
4182211 -GGTTTC
1 GGGTTTC
4182217 GGGTTTC
1 GGGTTTC
4182224 GGGTTTC
1 GGGTTTC
4182231 GGGTTTC
1 GGGTTTC
4182238 -GGTTTC
1 GGGTTTC
*
4182244 GGTATTTC
1 GG-GTTTC
4182252 GGGATTTC
1 GGG-TTTC
4182260 GGGTTTC
1 GGGTTTC
4182267 GGG-TTC
1 GGGTTTC
4182273 GGGTTTC
1 GGGTTTC
4182280 GGGTTTC
1 GGGTTTC
*
4182287 GGGGTTC
1 GGGTTTC
4182294 GGG-TTC
1 GGGTTTC
4182300 -GG-TTC
1 GGGTTTC
*
4182305 GGGTGTC
1 GGGTTTC
4182312 GGGTTGTC
1 GGGTT-TC
4182320 GGGTTTC
1 GGGTTTC
4182327 GGGTTTC
1 GGGTTTC
4182334 GGGTTTC
1 GGGTTTC
4182341 -GGTATTC
1 GGGT-TTC
4182348 GGGTTTTC
1 GGG-TTTC
4182356 GGGACTTTC
1 GGG--TTTC
4182365 GGGTTTC
1 GGGTTTC
4182372 GGGTTTC
1 GGGTTTC
4182379 -GG-TTC
1 GGGTTTC
4182384 GGGTTTC
1 GGGTTTC
4182391 AGGGTTTTC
1 -GGG-TTTC
*
4182400 GGGTTTT
1 GGGTTTC
4182407 GGGTTTC
1 GGGTTTC
4182414 -GGTTTC
1 GGGTTTC
4182420 GGGTTTC
1 GGGTTTC
4182427 -GGTTTC
1 GGGTTTC
4182433 GGGGTTTC
1 -GGGTTTC
4182441 GGGTTTAC
1 GGGTTT-C
4182449 GGGTATTTTC
1 GGG---TTTC
*
4182459 GGAGGATTTA
1 -G-GG-TTTC
**
4182469 GGG-GGC
1 GGGTTTC
4182475 GGGATTTC
1 GGG-TTTC
4182483 GGGTATTC
1 GGGT-TTC
4182491 GGGTTTC
1 GGGTTTC
4182498 GGGTTTC
1 GGGTTTC
4182505 GCGG-TTC
1 G-GGTTTC
4182512 GGGTTTC
1 GGGTTTC
4182519 -GGTTTCC
1 GGGTTT-C
4182526 GGGGTATTC
1 -GGGT-TTC
4182535 GGGTTTTC
1 GGG-TTTC
4182543 GGGTATTC
1 GGGT-TTC
4182551 GGG-TTC
1 GGGTTTC
4182557 GGGTTTC
1 GGGTTTC
4182564 -GGTATTC
1 GGGT-TTC
4182571 GGGTTTC
1 GGGTTTC
4182578 GGGTATTC
1 GGGT-TTC
4182586 -GGTCATT-
1 GGGT--TTC
4182593 GGCAGTTTTC
1 GG--G-TTTC
4182603 GGGTTTC
1 GGGTTTC
4182610 -GGTATTC
1 GGGT-TTC
4182617 GGGTTTTC
1 GGG-TTTC
4182625 GGAGTTTC
1 GG-GTTTC
4182633 GGGTTATC
1 GGGTT-TC
4182641 GGGTTTTC
1 GGG-TTTC
4182649 GGG-TTC
1 GGGTTTC
4182655 GGGTTTGC
1 GGGTTT-C
4182663 GGGTTTC
1 GGGTTTC
4182670 GGGTATTC
1 GGGT-TTC
4182678 GGGTTTAC
1 GGGTTT-C
*
4182686 GGGGTTC
1 GGGTTTC
4182693 GGG-TTC
1 GGGTTTC
4182699 GGGTTATC
1 GGGTT-TC
*
4182707 GGGTTGC
1 GGGTTTC
*
4182714 AGGTTT-
1 GGGTTTC
*
4182720 GGGTTGC
1 GGGTTTC
4182727 -GGTTCTC
1 GGGTT-TC
*
4182734 CGGTTGATC
1 GGGTT--TC
4182743 GGGGTTTC
1 -GGGTTTC
4182751 GGGTGTTC
1 GGGT-TTC
4182759 GGGTTTTC
1 GGG-TTTC
4182767 GGGTATTC
1 GGGT-TTC
4182775 GGG-TTC
1 GGGTTTC
*
4182781 GTGTATTTC
1 G-G-GTTTC
4182790 GGG-TTC
1 GGGTTTC
*
4182796 GGGGTTC
1 GGGTTTC
4182803 GGGTTTC
1 GGGTTTC
*
4182810 -GGTTGC
1 GGGTTTC
4182816 GGGTTTCC
1 GGGTTT-C
4182824 GGGTTTC
1 GGGTTTC
*
4182831 GGTTTTC
1 GGGTTTC
4182838 GGGTTTC
1 GGGTTTC
4182845 TGGAGTGTGTC
1 -GG-GT-T-TC
4182856 GGGATTTC
1 GGG-TTTC
4182864 GGGTTTACC
1 GGGTTT--C
4182873 GGGTTTCC
1 GGGTTT-C
4182881 GGGTTTTC
1 GGG-TTTC
4182889 GGGTATATTC
1 GGG--T-TTC
4182899 GGAGTTTC
1 GG-GTTTC
4182907 GGGTTTC
1 GGGTTTC
*
4182914 GGGTTGC
1 GGGTTTC
4182921 -GGTGTTC
1 GGGT-TTC
4182928 GGGTTTC
1 GGGTTTC
4182935 GGGTTTAC
1 GGGTTT-C
*
4182943 GGTGATATC
1 GG-G-TTTC
4182952 GGGTTATGC
1 GGGTT-T-C
4182961 GAGGGTTTC
1 --GGGTTTC
*
4182970 AGGGTTGC
1 -GGGTTTC
*
4182978 GGTTTTC
1 GGGTTTC
4182985 GAGGTTTC
1 G-GGTTTC
4182993 GGGTTTC
1 GGGTTTC
4183000 GGGTTTGC
1 GGGTTT-C
4183008 GGGTTTC
1 GGGTTTC
4183015 GGGGTTTAC
1 -GGGTTT-C
4183024 GGGTTTCC
1 GGGTTT-C
*
4183032 GGGTGTC
1 GGGTTTC
4183039 GGGTTATC
1 GGGTT-TC
*
4183047 GGGGTTGC
1 -GGGTTTC
4183055 GGGTTTC
1 GGGTTTC
4183062 GGGGTTTAC
1 -GGGTTT-C
4183071 GGGTTTC
1 GGGTTTC
4183078 GGGTTTC
1 GGGTTTC
4183085 GGGTTTTC
1 GGG-TTTC
*
4183093 GGGTATTTAA
1 GGG--TTT-C
*
4183103 GGGTTAC
1 GGGTTTC
*
4183110 GGGGTTC
1 GGGTTTC
4183117 GGGTTTC
1 GGGTTTC
4183124 -GGTTTC
1 GGGTTTC
4183130 GGG-TTC
1 GGGTTTC
4183136 GGG-TTC
1 GGGTTTC
4183142 GAGGTTTC
1 G-GGTTTC
4183150 GGG-TTC
1 GGGTTTC
*
4183156 GGGTTGC
1 GGGTTTC
4183163 GGGTTTTC
1 GGG-TTTC
*
4183171 GGGTGTAC
1 GGGT-TTC
4183179 GGGTTTC
1 GGGTTTC
4183186 GGGTTTC
1 GGGTTTC
4183193 GGGTTTC
1 GGGTTTC
4183200 -GG-TTC
1 GGGTTTC
4183205 -GG-TTC
1 GGGTTTC
*
4183210 GGTTTTC
1 GGGTTTC
*
4183217 GGGGATTC
1 -GGGTTTC
4183225 GGGTTTC
1 GGGTTTC
4183232 GGGTTTC
1 GGGTTTC
*
4183239 GGGGTTC
1 GGGTTTC
*
4183246 GGTTTTC
1 GGGTTTC
*
4183253 GGTTTTCC
1 GGGTTT-C
4183261 GGGTTTC
1 GGGTTTC
4183268 GGGTTTC
1 GGGTTTC
4183275 GGGGTTTC
1 -GGGTTTC
4183283 GGG-TTC
1 GGGTTTC
*
4183289 TGGTTTC
1 GGGTTTC
4183296 GGGTTTC
1 GGGTTTC
4183303 GGGTTTC
1 GGGTTTC
*
4183310 -GGTTGC
1 GGGTTTC
4183316 GGGTTTC
1 GGGTTTC
4183323 GGGTTTC
1 GGGTTTC
4183330 -GGTATTC
1 GGGT-TTC
4183337 GGAGTTTC
1 GG-GTTTC
4183345 GAGGTTTC
1 G-GGTTTC
4183353 GGGTTTTC
1 GGG-TTTC
4183361 GGGTTTC
1 GGGTTTC
4183368 GGGGTTTTAC
1 -GGG-TTT-C
*
4183378 TGGATTTC
1 -GGGTTTC
4183386 GGGTTTTC
1 GGG-TTTC
4183394 GAGGTTTC
1 G-GGTTTC
4183402 GGGTTTC
1 GGGTTTC
4183409 GGGATTTC
1 GGG-TTTC
4183417 GGG-TTC
1 GGGTTTC
4183423 GGGTTTTCTC
1 GGG--TT-TC
4183433 GGGTTTC
1 GGGTTTC
4183440 GGGGTTTTC
1 -GGG-TTTC
4183449 GGGTTTTC
1 GGG-TTTC
4183457 --GTTTC
1 GGGTTTC
4183462 GGG-TTC
1 GGGTTTC
4183468 GGGTTTTC
1 GGG-TTTC
4183476 -GGTTTC
1 GGGTTTC
4183482 GGGTTTC
1 GGGTTTC
4183489 GGGTTTC
1 GGGTTTC
4183496 -GGTTTC
1 GGGTTTC
*
4183502 GGGGTTGCC
1 -GGGTT-TC
4183511 GGGTTTC
1 GGGTTTC
4183518 -GGTTTC
1 GGGTTTC
4183524 GGGTTTC
1 GGGTTTC
4183531 GGGTTTC
1 GGGTTTC
4183538 GGGTTTTC
1 GGG-TTTC
4183546 GGGTTTC
1 GGGTTTC
4183553 GGGTTTC
1 GGGTTTC
4183560 GGGTTT-
1 GGGTTTC
*
4183566 AGGTTATAC
1 GGGTT-T-C
4183575 GGG-TTC
1 GGGTTTC
4183581 GGGTTTC
1 GGGTTTC
4183588 GGGTTTC
1 GGGTTTC
4183595 GGGTTTC
1 GGGTTTC
4183602 GGAGTTTC
1 GG-GTTTC
*
4183610 GGGTTTA
1 GGGTTTC
*
4183617 GGGTTTA
1 GGGTTTC
*
4183624 GGGTTTATA
1 GGG-TT-TC
4183633 GGGTTTGC
1 GGGTTT-C
*
4183641 GGGTTTA
1 GGGTTTC
*
4183648 GGTTTTC
1 GGGTTTC
*
4183655 GGGTTTTA
1 GGG-TTTC
*
4183663 GGGTTTA
1 GGGTTTC
*
4183670 GGGTTTA
1 GGGTTTC
4183677 GGG--T-
1 GGGTTTC
4183681 GAGGTTTC
1 G-GGTTTC
*
4183689 AGGTTTTC
1 -GGGTTTC
4183697 GGGTTTC
1 GGGTTTC
4183704 GGAGTTT-
1 GG-GTTTC
*
4183711 AGGTTTC
1 GGGTTTC
4183718 -GGTTTC
1 GGGTTTC
4183724 GGGTTTC
1 GGGTTTC
4183731 -GGTTTC
1 GGGTTTC
4183737 -GGTTTC
1 GGGTTTC
4183743 GGGTTTC
1 GGGTTTC
4183750 GGGTTTC
1 GGGTTTC
*
4183757 GGAGTTTA
1 GG-GTTTC
4183765 GGGTTTC
1 GGGTTTC
*
4183772 GGGTTTTA
1 GGG-TTTC
4183780 GGGTTTC
1 GGGTTTC
4183787 GGGTTTC
1 GGGTTTC
*
4183794 AGGG-TTA
1 -GGGTTTC
4183801 GGGTTT-
1 GGGTTTC
*
4183807 AGGTTTC
1 GGGTTTC
4183814 GGGTTTAC
1 GGGTTT-C
4183822 GGGTTTC
1 GGGTTTC
4183829 GGGTTTC
1 GGGTTTC
4183836 GGGTTTC
1 GGGTTTC
*
4183843 GGGTTTAA
1 GGGTTT-C
4183851 GGGTTTC
1 GGGTTTC
*
4183858 GGTGTTTT
1 GG-GTTTC
4183866 GGGTATTC
1 GGGT-TTC
4183874 GGGTTTC
1 GGGTTTC
4183881 GGGTTTATC
1 GGG-TT-TC
4183890 GGGTTTC
1 GGGTTTC
*
4183897 -GGTTTA
1 GGGTTTC
4183903 GGGTTT-
1 GGGTTTC
*
4183909 AGGTTTC
1 GGGTTTC
4183916 GGG-TTC
1 GGGTTTC
*
4183922 GGGATTTTA
1 GGG--TTTC
4183931 GGGTTTTC
1 GGG-TTTC
4183939 GGGTTTC
1 GGGTTTC
4183946 GGGTTTC
1 GGGTTTC
4183953 GGGTTTTC
1 GGG-TTTC
4183961 GGGATTTTC
1 GGG--TTTC
4183970 GGG-TTC
1 GGGTTTC
4183976 GGGTTTC
1 GGGTTTC
4183983 GGGTTTC
1 GGGTTTC
*
4183990 GGGTTGC
1 GGGTTTC
4183997 GGGTTTC
1 GGGTTTC
4184004 -GGTTTC
1 GGGTTTC
4184010 GGGTTT-
1 GGGTTTC
**
4184016 GGGTTGA
1 GGGTTTC
4184023 GGGTTTC
1 GGGTTTC
4184030 GGGATTTATTC
1 GGG---T-TTC
*
4184041 GGTTTTC
1 GGGTTTC
4184048 GGGTTTTTC
1 GGG--TTTC
* *
4184057 GGGGGTTA
1 -GGGTTTC
* *
4184065 GTGTTTA
1 GGGTTTC
4184072 GGGTTTC
1 GGGTTTC
4184079 GGGTTTC
1 GGGTTTC
4184086 -GGTTTC
1 GGGTTTC
4184092 GGGTTTC
1 GGGTTTC
4184099 GGGTTTC
1 GGGTTTC
*
4184106 -GGTTTA
1 GGGTTTC
4184112 GGGTTTC
1 GGGTTTC
*
4184119 CGGTTTC
1 GGGTTTC
4184126 GGGTTT-
1 GGGTTTC
4184132 -GGTATTC
1 GGGT-TTC
4184139 GGGTTT-
1 GGGTTTC
4184145 GGGTATTC
1 GGGT-TTC
4184153 GGGTTATC
1 GGGTT-TC
4184161 GGGTTTC
1 GGGTTTC
4184168 GGGTTTC
1 GGGTTTC
4184175 GGGTTTC
1 GGGTTTC
*
4184182 GGGGTTC
1 GGGTTTC
*
4184189 TGGTTTC
1 GGGTTTC
4184196 GGGTTTC
1 GGGTTTC
4184203 GGGTTTC
1 GGGTTTC
4184210 GGGTTTC
1 GGGTTTC
4184217 GGGTTTC
1 GGGTTTC
4184224 GGGTTTC
1 GGGTTTC
4184231 GGGTTTC
1 GGGTTTC
4184238 AGGGTGTTC
1 -GGGT-TTC
4184247 GGGTTTC
1 GGGTTTC
4184254 GGGAATTTC
1 GGG--TTTC
4184263 -GGTTTC
1 GGGTTTC
4184269 GGGTTGTC
1 GGGTT-TC
4184277 GGGGTATTTAC
1 -GGG--TTT-C
4184288 GGGTTTC
1 GGGTTTC
4184295 GGGTTTC
1 GGGTTTC
4184302 -GGTTTC
1 GGGTTTC
*
4184308 -GGTTGTA
1 GGGTT-TC
4184315 GGGTTTCC
1 GGGTTT-C
4184323 GGGTTTTC
1 GGG-TTTC
4184331 GGGTTTC
1 GGGTTTC
4184338 GGGTTTC
1 GGGTTTC
4184345 -GGTTTGC
1 GGGTTT-C
4184352 GGGTTTAC
1 GGGTTT-C
*
4184360 GGGGTTC
1 GGGTTTC
4184367 GGG-TTC
1 GGGTTTC
4184373 GGGTTTAC
1 GGGTTT-C
*
4184381 GGGTTTA
1 GGGTTTC
4184388 GGGTCTTC
1 GGGT-TTC
*
4184396 GGGTTTT
1 GGGTTTC
*
4184403 GGGTATC
1 GGGTTTC
4184410 GGGGTTTTC
1 -GGG-TTTC
4184419 GGGTTTC
1 GGGTTTC
4184426 GGGTGTTC
1 GGGT-TTC
4184434 -GGTTTC
1 GGGTTTC
*
4184440 GGGTTTTA
1 GGG-TTTC
4184448 GGGTTTC
1 GGGTTTC
4184455 GGGTTTC
1 GGGTTTC
4184462 -GGTTTC
1 GGGTTTC
*
4184468 GGGGTTGC
1 -GGGTTTC
*
4184476 GGTTTTTC
1 GG-GTTTC
4184484 -GGTTTGC
1 GGGTTT-C
4184491 GGGTTTC
1 GGGTTTC
4184498 GGGGTTTTAC
1 -GGG-TTT-C
*
4184508 GGTTTTC
1 GGGTTTC
4184515 GGGTTTC
1 GGGTTTC
4184522 GGGTATTC
1 GGGT-TTC
4184530 GGGTTTC
1 GGGTTTC
4184537 GGGTTTC
1 GGGTTTC
4184544 -GGTTTC
1 GGGTTTC
4184550 GGGTTTC
1 GGGTTTC
4184557 GGGTTTC
1 GGGTTTC
*
4184564 GGGGTTC
1 GGGTTTC
4184571 GGGTTTTC
1 GGG-TTTC
*
4184579 GGAGTGTC
1 GG-GTTTC
4184587 -GGTTTC
1 GGGTTTC
4184593 GGGTTTC
1 GGGTTTC
4184600 GGGTTT-
1 GGGTTTC
*
4184606 AGG-TTC
1 GGGTTTC
4184612 GGGTTTC
1 GGGTTTC
*
4184619 GGGTTTA
1 GGGTTTC
*
4184626 GGGGTTC
1 GGGTTTC
4184633 GGGTTTC
1 GGGTTTC
*
4184640 GGGTTGC
1 GGGTTTC
4184647 -GGTTTC
1 GGGTTTC
4184653 GGGTTTC
1 GGGTTTC
4184660 GGGTTT-
1 GGGTTTC
*
4184666 GGGTTGTTT
1 GGG-T-TTC
4184675 GCGGTTTC
1 G-GGTTTC
4184683 GGGTTTC
1 GGGTTTC
4184690 GGGATTTC
1 GGG-TTTC
* **
4184698 GGATGCC
1 GGGTTTC
4184705 GGGTTTC
1 GGGTTTC
4184712 GGGATTTTC
1 GGG--TTTC
4184721 -GGTTTC
1 GGGTTTC
4184727 -GGTTTC
1 GGGTTTC
4184733 GGGTTTC
1 GGGTTTC
4184740 GGGTTTC
1 GGGTTTC
4184747 GGGTTTC
1 GGGTTTC
4184754 AGGGTTTTC
1 -GGG-TTTC
*
4184763 GGGATTC
1 GGGTTTC
4184770 GGGTTTTC
1 GGG-TTTC
*
4184778 -GGTTGC
1 GGGTTTC
4184784 GGGTTTC
1 GGGTTTC
4184791 GGGTTTC
1 GGGTTTC
4184798 GGGTTTC
1 GGGTTTC
*
4184805 TGGTTTC
1 GGGTTTC
*
4184812 GGG-TTA
1 GGGTTTC
*
4184818 GGGTTTA
1 GGGTTTC
4184825 GGGTTTTC
1 GGG-TTTC
4184833 GGGTTTC
1 GGGTTTC
4184840 -GGTTTC
1 GGGTTTC
4184846 GGGTTTC
1 GGGTTTC
4184853 GGGTATTC
1 GGGT-TTC
4184861 GGGTTTC
1 GGGTTTC
***
4184868 GGGCACAAAC
1 GGG---TTTC
***
4184878 TGAGGGAAC
1 -G-GGTTTC
***
4184887 GAAGAAGAAGC
1 G--G--GTTTC
*
4184898 GCACAGTTTTC
1 G----GGTTTC
*
4184909 GGGTTGAC
1 GGGTT-TC
4184917 GGGTTTC
1 GGGTTTC
4184924 GGGTTTGC
1 GGGTTT-C
4184932 GGGTTTC
1 GGGTTTC
4184939 GGGTTCTC
1 GGGTT-TC
4184947 GGGTTTC
1 GGGTTTC
4184954 GGG-TTC
1 GGGTTTC
4184960 GGGTTTC
1 GGGTTTC
*
4184967 -GGTTTA
1 GGGTTTC
4184973 GGGTTTC
1 GGGTTTC
4184980 -GGTTTCC
1 GGGTTT-C
4184987 GGGTTTC
1 GGGTTTC
*
4184994 GGGGTTC
1 GGGTTTC
**
4185001 GGGTGGC
1 GGGTTTC
4185008 GGGTTTC
1 GGGTTTC
4185015 GGGTTTC
1 GGGTTTC
4185022 GGGTTATTC
1 GGG-T-TTC
*
4185031 GGGTGTC
1 GGGTTTC
4185038 GGGTTTC
1 GGGTTTC
4185045 GGGTTATC
1 GGGTT-TC
*
4185053 GGGTTGC
1 GGGTTTC
4185060 AGGGTTATC
1 -GGGTT-TC
4185069 AAGGGTTTC
1 --GGGTTTC
*
4185078 AGGTTTTC
1 -GGGTTTC
4185086 GGGTTTC
1 GGGTTTC
4185093 GGG-TTC
1 GGGTTTC
4185099 GGGTTTC
1 GGGTTTC
4185106 GGAG-TTC
1 GG-GTTTC
4185113 GGG-TTC
1 GGGTTTC
*
4185119 GGAGGTTAC
1 -G-GGTTTC
4185128 -GGTTTC
1 GGGTTTC
4185134 GGGTTTC
1 GGGTTTC
4185141 GGGTTTC
1 GGGTTTC
4185148 GGGTTTC
1 GGGTTTC
4185155 -GGTTTC
1 GGGTTTC
4185161 -GGTTTC
1 GGGTTTC
4185167 GGGTTTC
1 GGGTTTC
4185174 GGGTTTC
1 GGGTTTC
4185181 GGGTTTC
1 GGGTTTC
4185188 GGGTTTC
1 GGGTTTC
4185195 AGGG-TTC
1 -GGGTTTC
4185202 GGGTTTC
1 GGGTTTC
4185209 -GGTTTC
1 GGGTTTC
4185215 AGGGGTTTC
1 --GGGTTTC
4185224 GGGTTATC
1 GGGTT-TC
4185232 GGGTTTC
1 GGGTTTC
*
4185239 GGGGTTC
1 GGGTTTC
*
4185246 GGGTTGC
1 GGGTTTC
*
4185253 GGG-TTA
1 GGGTTTC
4185259 GGG-TTC
1 GGGTTTC
4185265 GGG-TTC
1 GGGTTTC
4185271 GGGTTTTC
1 GGG-TTTC
4185279 GGGTTTC
1 GGGTTTC
4185286 GGGATATGTC
1 GGG-T-T-TC
4185296 GGGTTATC
1 GGGTT-TC
*
4185304 GGGTTGC
1 GGGTTTC
4185311 GGGATTTC
1 GGG-TTTC
*
4185319 ATGGTTTC
1 -GGGTTTC
4185327 GGG-TTC
1 GGGTTTC
4185333 GGGTTTC
1 GGGTTTC
4185340 --GTTTC
1 GGGTTTC
4185345 -GGTTATAC
1 GGGTT-T-C
4185353 -GGTTTC
1 GGGTTTC
4185359 GGGTTTC
1 GGGTTTC
* *
4185366 -TGTTGC
1 GGGTTTC
4185372 GGGTATTC
1 GGGT-TTC
4185380 GGGATTTTC
1 GGG--TTTC
4185389 GGGTTTC
1 GGGTTTC
4185396 GGGTTTC
1 GGGTTTC
4185403 GGGTTTC
1 GGGTTTC
4185410 GGGTTATC
1 GGGTT-TC
4185418 AGGGTTTC
1 -GGGTTTC
4185426 GGG-TTC
1 GGGTTTC
4185432 GGGTTTGC
1 GGGTTT-C
4185440 GGGTTTC
1 GGGTTTC
4185447 GGGTTTC
1 GGGTTTC
4185454 GGGTTTC
1 GGGTTTC
4185461 GGGTTTC
1 GGGTTTC
*
4185468 -GGTTACC
1 GGGTT-TC
4185475 GGGTTTC
1 GGGTTTC
4185482 GGGTGTTC
1 GGGT-TTC
4185490 GGGTTTGC
1 GGGTTT-C
**
4185498 GAGG--GG
1 G-GGTTTC
4185504 GGGTTT-
1 GGGTTTC
*
4185510 --GTTTT
1 GGGTTTC
** *
4185515 GTTATTTTT
1 G--GGTTTC
*
4185524 GTTGGTTTT
1 G--GGTTTC
** *
4185533 GTTTTTTT
1 G-GGTTTC
** *
4185541 ATGTTGC
1 GGGTTTC
4185548 -GG-TTC
1 GGGTTTC
4185553 GGGTTTAC
1 GGGTTT-C
*
4185561 AGGGGTT-
1 -GGGTTTC
4185568 -GGTTT-
1 GGGTTTC
**
4185573 -TTTTTC
1 GGGTTTC
4185579 GGGTTTGC
1 GGGTTT-C
4185587 GGGTTTC
1 GGGTTTC
4185594 GGGTTATC
1 GGGTT-TC
4185602 GGGTTTC
1 GGGTTTC
*
4185609 GGGGTTAC
1 -GGGTTTC
4185617 GGG-TTC
1 GGGTTTC
4185623 GGGTTTC
1 GGGTTTC
4185630 -GGTTTC
1 GGGTTTC
4185636 GGGTTTC
1 GGGTTTC
4185643 GGGTTTC
1 GGGTTTC
4185650 GGGTTTC
1 GGGTTTC
4185657 GGGTTTC
1 GGGTTTC
4185664 GGGTTTTC
1 GGG-TTTC
4185672 -GGTTTC
1 GGGTTTC
*
4185678 GGGGTTC
1 GGGTTTC
4185685 GGGGTTTTTC
1 -GGG--TTTC
4185695 GGGTTTC
1 GGGTTTC
4185702 -GGTATTC
1 GGGT-TTC
4185709 GGGTTTC
1 GGGTTTC
*
4185716 GGGGTTC
1 GGGTTTC
4185723 -GGTTTC
1 GGGTTTC
4185729 -GGTTCTC
1 GGGTT-TC
4185736 GGAGTTTTC
1 GG-G-TTTC
4185745 GGGTTTC
1 GGGTTTC
4185752 GGGTTTC
1 GGGTTTC
4185759 -GGTATTC
1 GGGT-TTC
*
4185766 GGGGTTGCC
1 -GGGTT-TC
4185775 GGGTTTC
1 GGGTTTC
4185782 GGAGTTTC
1 GG-GTTTC
**
4185790 GGGTTGA
1 GGGTTTC
*
4185797 GGTTTTC
1 GGGTTTC
4185804 AGGGTTTCC
1 -GGGTTT-C
4185813 GGGTTGTC
1 GGGTT-TC
4185821 -GGTTTC
1 GGGTTTC
4185827 -GGTTTC
1 GGGTTTC
4185833 GGGTTTC
1 GGGTTTC
4185840 GGGATTTC
1 GGG-TTTC
4185848 GGGTTAGTC
1 GGGTT--TC
4185857 GGGTTTC
1 GGGTTTC
4185864 GAGGTTTC
1 G-GGTTTC
4185872 GGGTTTC
1 GGGTTTC
4185879 GGGTTT-
1 GGGTTTC
4185885 GGGTTTC
1 GGGTTTC
4185892 GGGTTTC
1 GGGTTTC
4185899 GGAG-TTC
1 GG-GTTTC
4185906 -GGTTTC
1 GGGTTTC
4185912 GTGGGTTTC
1 --GGGTTTC
4185921 GGGGTTTC
1 -GGGTTTC
4185929 GGGGTTTC
1 -GGGTTTC
*
4185937 GGGGTTGC
1 -GGGTTTC
4185945 GGGATTTC
1 GGG-TTTC
4185953 GGGTTTTGACCC
1 GGG-TTT----C
4185965 GGG-TTC
1 GGGTTTC
4185971 GGG-TTC
1 GGGTTTC
4185977 GGGTTTC
1 GGGTTTC
4185984 -GGTTTC
1 GGGTTTC
4185990 GAGGTTTC
1 G-GGTTTC
*
4185998 GGTTTATC
1 GGGTT-TC
4186006 -GGTTTC
1 GGGTTTC
*
4186012 GAGTTTC
1 GGGTTTC
4186019 GGGTTTAC
1 GGGTTT-C
4186027 GGGTTTC
1 GGGTTTC
4186034 GGGTTTC
1 GGGTTTC
4186041 GGG-TTC
1 GGGTTTC
4186047 GGGTTATC
1 GGGTT-TC
4186055 GGGTTTC
1 GGGTTTC
4186062 GGGTTTC
1 GGGTTTC
4186069 GGGTTTC
1 GGGTTTC
4186076 GGGTTTTC
1 GGG-TTTC
4186084 GGGTTATC
1 GGGTT-TC
4186092 GGG-TTC
1 GGGTTTC
4186098 GGG-TTC
1 GGGTTTC
4186104 GGGGTTTC
1 -GGGTTTC
4186112 GGGTTTAC
1 GGGTTT-C
4186120 GGGTTTTC
1 GGG-TTTC
4186128 GGGTTTC
1 GGGTTTC
4186135 GGGGTTTC
1 -GGGTTTC
4186143 GGG-TTC
1 GGGTTTC
4186149 GGGTTTC
1 GGGTTTC
4186156 GGGTTTC
1 GGGTTTC
4186163 GGGTTTC
1 GGGTTTC
4186170 GGGTTTC
1 GGGTTTC
4186177 GGG-TTC
1 GGGTTTC
4186183 -GGTTTC
1 GGGTTTC
4186189 -GGTATTC
1 GGGT-TTC
4186196 -GGTTTC
1 GGGTTTC
4186202 GGGTTTC
1 GGGTTTC
4186209 GGG-TTC
1 GGGTTTC
4186215 GGAGTTTC
1 GG-GTTTC
4186223 GGGTTTC
1 GGGTTTC
4186230 GGGTTTTC
1 GGG-TTTC
4186238 GGGTTTC
1 GGGTTTC
*
4186245 GAGGGTTC
1 G-GGTTTC
*
4186253 -GGTTGC
1 GGGTTTC
4186259 GGGTTTC
1 GGGTTTC
4186266 GAGGTTTC
1 G-GGTTTC
4186274 GGG-TTC
1 GGGTTTC
4186280 GGGATTTC
1 GGG-TTTC
4186288 GGGTTTC
1 GGGTTTC
4186295 GGGTCTTC
1 GGGT-TTC
*
4186303 GGGATTGC
1 GGG-TTTC
4186311 GGGTTTC
1 GGGTTTC
4186318 GGGTTTC
1 GGGTTTC
*
4186325 GGTTTTC
1 GGGTTTC
4186332 GGGTTTC
1 GGGTTTC
* *
4186339 GGGGTTA
1 GGGTTTC
4186346 GGGTTTC
1 GGGTTTC
*
4186353 GGGTTGC
1 GGGTTTC
4186360 -GGTTCTC
1 GGGTT-TC
*
4186367 GGGTTGC
1 GGGTTTC
4186374 GCGGATTTC
1 G-GG-TTTC
4186383 GGGTTTC
1 GGGTTTC
**
4186390 GGGTTGG
1 GGGTTTC
4186397 GGGTTTC
1 GGGTTTC
4186404 GGGTTTC
1 GGGTTTC
4186411 GGGTTT-
1 GGGTTTC
4186417 GGGTTTC
1 GGGTTTC
4186424 TGGGGTTTC
1 --GGGTTTC
4186433 AGGGTTTCC
1 -GGGTTT-C
4186442 GGGTTTTCC
1 GGG-TTT-C
*
4186451 GGGTTGAC
1 GGGTT-TC
4186459 AGGG-TTC
1 -GGGTTTC
*
4186466 GCGATATT-
1 G-GGT-TTC
4186474 GGGTTTC
1 GGGTTTC
4186481 GGGTTTC
1 GGGTTTC
4186488 GGG-TTC
1 GGGTTTC
4186494 -GGTTT-
1 GGGTTTC
4186499 GGG-TTC
1 GGGTTTC
*
4186505 GGGATTAC
1 GGG-TTTC
4186513 GGGTTTGC
1 GGGTTT-C
4186521 GGGTTTTC
1 GGG-TTTC
4186529 GGGTTTC
1 GGGTTTC
4186536 GGGTTTC
1 GGGTTTC
4186543 GGG-TTC
1 GGGTTTC
4186549 GGGTTTC
1 GGGTTTC
4186556 GGGTAATTC
1 GGGT--TTC
4186565 -GGTTTC
1 GGGTTTC
*
4186571 GTGTTATAC
1 GGGTT-T-C
*
4186580 GGATTTC
1 GGGTTTC
4186587 GGGTTTC
1 GGGTTTC
4186594 GGTGTTTCC
1 GG-GTTT-C
4186603 GGGTTTC
1 GGGTTTC
*
4186610 AGGTTTTC
1 -GGGTTTC
4186618 GGGTTTC
1 GGGTTTC
4186625 GGGTTTC
1 GGGTTTC
*
4186632 TGGTTTC
1 GGGTTTC
4186639 GGGTTTC
1 GGGTTTC
4186646 -GGTTTC
1 GGGTTTC
4186652 GGGTTTC
1 GGGTTTC
*
4186659 GAGGGGTTGC
1 ---GGGTTTC
*
4186669 GAGTTTC
1 GGGTTTC
4186676 GGGAAGTTTC
1 -GG--GTTTC
4186686 GGGTATTTC
1 GGG--TTTC
4186695 GGGGTTT-
1 -GGGTTTC
*
4186702 GCGGTTTA
1 G-GGTTTC
4186710 GGGTTTC
1 GGGTTTC
*
4186717 GGGGTTC
1 GGGTTTC
4186724 GGGTTTC
1 GGGTTTC
*
4186731 GGAGTAT-
1 GG-GTTTC
*
4186738 GCGGTGATC
1 G-GGT-TTC
4186747 AGGGTTTC
1 -GGGTTTC
4186755 GGGTTTC
1 GGGTTTC
4186762 -GG-TTC
1 GGGTTTC
*
4186767 GGTTTTC
1 GGGTTTC
4186774 GGGTTTC
1 GGGTTTC
4186781 GGGTTTGC
1 GGGTTT-C
4186789 GGGTTTTC
1 GGG-TTTC
4186797 GGGTTTC
1 GGGTTTC
4186804 GAGGTTTC
1 G-GGTTTC
4186812 GGGTTTC
1 GGGTTTC
4186819 GGGTTTAC
1 GGGTTT-C
*
4186827 CGGTTTC
1 GGGTTTC
*
4186834 GGTTTTC
1 GGGTTTC
4186841 GGGTTTC
1 GGGTTTC
4186848 GGGTTTC
1 GGGTTTC
4186855 GGGGTTTTC
1 -GGG-TTTC
4186864 TGGGTTTC
1 -GGGTTTC
4186872 GGGTTTC
1 GGGTTTC
4186879 TGGGTTTC
1 -GGGTTTC
*
4186887 CGGTTTC
1 GGGTTTC
4186894 GGGATTTC
1 GGG-TTTC
*
4186902 --GTGTC
1 GGGTTTC
4186907 GGAGTTTC
1 GG-GTTTC
4186915 GGAGAATTTC
1 GG-G--TTTC
4186925 -GGTTTC
1 GGGTTTC
4186931 -GGTTTC
1 GGGTTTC
4186937 GGGTTTC
1 GGGTTTC
4186944 GGGTTTTC
1 GGG-TTTC
*
4186952 GGAGGTTC
1 GG-GTTTC
4186960 GGG-TTC
1 GGGTTTC
4186966 GGGTTTTC
1 GGG-TTTC
*
4186974 GGGGTTGC
1 -GGGTTTC
4186982 GGGTTTCC
1 GGGTTT-C
4186990 GGGTTT-
1 GGGTTTC
4186996 GCGG-TTC
1 G-GGTTTC
4187003 GGGTTTC
1 GGGTTTC
4187010 GGGTTTC
1 GGGTTTC
4187017 GGGTTTC
1 GGGTTTC
4187024 GGGTTTC
1 GGGTTTC
4187031 GGGGTTTC
1 -GGGTTTC
4187039 AGGGGATTTC
1 --GGG-TTTC
4187049 GGG-TTC
1 GGGTTTC
4187055 GCAGGTTTCC
1 G--GGTTT-C
4187065 GGGTTTC
1 GGGTTTC
*
4187072 -CGTTT-
1 GGGTTTC
*
4187077 TGGTTTC
1 GGGTTTC
4187084 GGGTTTC
1 GGGTTTC
4187091 GGGTTTC
1 GGGTTTC
4187098 GGGTTTC
1 GGGTTTC
4187105 GGGTTTCC
1 GGGTTT-C
4187113 GGGTTTC
1 GGGTTTC
4187120 -GG-TTC
1 GGGTTTC
4187125 GGGTTTTC
1 GGG-TTTC
4187133 GGGTTTC
1 GGGTTTC
4187140 GGGTTTC
1 GGGTTTC
*
4187147 GGGTTGC
1 GGGTTTC
4187154 GGGATTTC
1 GGG-TTTC
*
4187162 GGGTGTC
1 GGGTTTC
4187169 GGGTTTC
1 GGGTTTC
4187176 GGGTTTAGC
1 GGGTTT--C
4187185 GGGTTTC
1 GGGTTTC
*
4187192 GAGGGGTTC
1 --GGGTTTC
4187201 GGGTTTC
1 GGGTTTC
4187208 GAGGTATTCC
1 G-GGT-TT-C
4187218 GGGTTTTC
1 GGG-TTTC
4187226 GGGTTTC
1 GGGTTTC
4187233 GGGTTTTC
1 GGG-TTTC
4187241 AGGGTTTC
1 -GGGTTTC
4187249 GGGTTTGC
1 GGGTTT-C
4187257 GGGTTTCC
1 GGGTTT-C
4187265 GGGTTGTC
1 GGGTT-TC
*
4187273 GGATTTTAC
1 GG-GTTT-C
4187282 GGGTTTGC
1 GGGTTT-C
4187290 GGGTTTC
1 GGGTTTC
4187297 -GGTTTC
1 GGGTTTC
4187303 GGGTTTTATC
1 GGG--TT-TC
4187313 GGGTTTC
1 GGGTTTC
4187320 GGGTTTC
1 GGGTTTC
4187327 GGGTTTC
1 GGGTTTC
*
4187334 -CGTGTTC
1 GGGT-TTC
4187341 GGGGTTTC
1 -GGGTTTC
4187349 GGG-TTC
1 GGGTTTC
*
4187355 CGGTTTC
1 GGGTTTC
*
4187362 GGGTTTT
1 GGGTTTC
4187369 GGGTTTTC
1 GGG-TTTC
4187377 GGGTTTC
1 GGGTTTC
*
4187384 GGATTTC
1 GGGTTTC
4187391 GGGTTTGC
1 GGGTTT-C
4187399 GGGTTTC
1 GGGTTTC
4187406 GGGTTTC
1 GGGTTTC
4187413 GGGTTTC
1 GGGTTTC
4187420 GGGTTTC
1 GGGTTTC
4187427 GGGTTTC
1 GGGTTTC
4187434 GGGTTTC
1 GGGTTTC
4187441 -GGTTTC
1 GGGTTTC
4187447 GGGTTTC
1 GGGTTTC
4187454 GGGTTTC
1 GGGTTTC
4187461 GGGTTTC
1 GGGTTTC
**
4187468 GGGGTGCCCAC
1 -GGGT---TTC
4187479 GGGTTTC
1 GGGTTTC
*
4187486 GCGTTTC
1 GGGTTTC
*
4187493 GGGATTTA
1 GGG-TTTC
4187501 GGAGTTTC
1 GG-GTTTC
4187509 GGGTTTAC
1 GGGTTT-C
*
4187517 GGGGTTC
1 GGGTTTC
*
4187524 GGTTTTC
1 GGGTTTC
4187531 GGAGTTATC
1 GG-GTT-TC
4187540 GGGTTATC
1 GGGTT-TC
4187548 AGGGTTTC
1 -GGGTTTC
4187556 GGGGTTTC
1 -GGGTTTC
4187564 GGGTTTC
1 GGGTTTC
* *
4187571 GTGTTTA
1 GGGTTTC
4187578 GGGTTTTC
1 GGG-TTTC
4187586 GGGTTTC
1 GGGTTTC
4187593 GGGTTTTC
1 GGG-TTTC
4187601 GGGTTATTC
1 GGG-T-TTC
4187610 GGGTTTC
1 GGGTTTC
4187617 GAGGTTTTC
1 G-GG-TTTC
4187626 GGGTTTTC
1 GGG-TTTC
4187634 -GGTTTC
1 GGGTTTC
4187640 GGGTTAATCC
1 GGGTT--T-C
4187650 GGGTTTC
1 GGGTTTC
4187657 GGGTTTTC
1 GGG-TTTC
* *
4187665 GTG-TAC
1 GGGTTTC
4187671 GGGGTTTC
1 -GGGTTTC
4187679 GGGTTTC
1 GGGTTTC
*
4187686 GGGTTAC
1 GGGTTTC
4187693 AGGGTTTAC
1 -GGGTTT-C
4187702 GGGTTTC
1 GGGTTTC
*
4187709 GAGGTTTT
1 G-GGTTTC
4187717 GGAGATTTTC
1 GG-G--TTTC
4187727 GGGTTTC
1 GGGTTTC
4187734 GGGTTTC
1 GGGTTTC
4187741 GGGTTTC
1 GGGTTTC
4187748 GGG-TTC
1 GGGTTTC
4187754 GGGTTTC
1 GGGTTTC
4187761 GGGTTTC
1 GGGTTTC
4187768 GGGTTTC
1 GGGTTTC
4187775 GGG-TTC
1 GGGTTTC
4187781 GGGTTTC
1 GGGTTTC
4187788 GGGTTTAC
1 GGGTTT-C
*
4187796 GGGATGTC
1 GGG-TTTC
4187804 GGGTTTC
1 GGGTTTC
4187811 GGGTTTC
1 GGGTTTC
4187818 GGGTTTCGC
1 GGGTTT--C
4187827 GGGGTGTTC
1 -GGGT-TTC
4187836 -GGTTTC
1 GGGTTTC
4187842 GGGTTATC
1 GGGTT-TC
4187850 -GGTTTC
1 GGGTTTC
4187856 GGGTTTC
1 GGGTTTC
4187863 -GGTTTAC
1 GGGTTT-C
4187870 GGGTTTC
1 GGGTTTC
*
4187877 GGGAGTTC
1 GGG-TTTC
4187885 GGGTTTTC
1 GGG-TTTC
4187893 GGGTTTC
1 GGGTTTC
*
4187900 GGGTATC
1 GGGTTTC
*
4187907 --ATTTC
1 GGGTTTC
4187912 GGGTTTC
1 GGGTTTC
*
4187919 GGGTTTA
1 GGGTTTC
4187926 GGGTTTC
1 GGGTTTC
4187933 GGGTTTC
1 GGGTTTC
4187940 -GGTTTCC
1 GGGTTT-C
4187947 GAGGTTTC
1 G-GGTTTC
4187955 GGGTTTTC
1 GGG-TTTC
4187963 GAAGGTTTC
1 G--GGTTTC
*
4187972 GGTCTTTC
1 GG-GTTTC
4187980 GGGTGTTTC
1 -GG-GTTTC
*
4187989 GGGGTTCC
1 -GGGTTTC
4187997 GGGTTTC
1 GGGTTTC
*
4188004 GGTTTTC
1 GGGTTTC
4188011 GGGTTTC
1 GGGTTTC
4188018 GGGTTTC
1 GGGTTTC
4188025 GGGTTTC
1 GGGTTTC
*
4188032 GGGTTGC
1 GGGTTTC
4188039 GGGTTTC
1 GGGTTTC
4188046 -GGTTTC
1 GGGTTTC
*
4188052 GAGGTGTC
1 G-GGTTTC
*
4188060 GGTTTTC
1 GGGTTTC
4188067 AAGGGTTTC
1 --GGGTTTC
4188076 GGGTTTATC
1 GGG-TT-TC
*
4188085 GGGGTTGC
1 -GGGTTTC
4188093 GGG-TTC
1 GGGTTTC
*
4188099 GGGTTTA
1 GGGTTTC
4188106 GGGTTTC
1 GGGTTTC
4188113 GGGTTTC
1 GGGTTTC
4188120 AGGGTTTTC
1 -GGG-TTTC
4188129 GGGTTTC
1 GGGTTTC
4188136 TGGGGGGTATTC
1 ----GGGT-TTC
4188148 GGGTTTC
1 GGGTTTC
4188155 GGAGTTTC
1 GG-GTTTC
4188163 GGGTTTC
1 GGGTTTC
4188170 GGGTTTTTC
1 GGG--TTTC
*
4188179 GGGTTGC
1 GGGTTTC
4188186 GGGTTCTTCC
1 GGG-T-TT-C
4188196 GGGTTTC
1 GGGTTTC
* *
4188203 AGGATTC
1 GGGTTTC
4188210 GAGGTTTC
1 G-GGTTTC
*
4188218 GGGTTGC
1 GGGTTTC
4188225 GGGTTTTTC
1 GGG--TTTC
4188234 GCGGTTTC
1 G-GGTTTC
4188242 GGGGTTTC
1 -GGGTTTC
4188250 GGG-TTC
1 GGGTTTC
4188256 GGG-TTC
1 GGGTTTC
4188262 AGGGATTATC
1 -GGG-TT-TC
4188272 GGGTTTC
1 GGGTTTC
4188279 GGGTTTC
1 GGGTTTC
4188286 AGGGTTTC
1 -GGGTTTC
4188294 GGGTTTC
1 GGGTTTC
4188301 GAGGTTTC
1 G-GGTTTC
4188309 GGGTTTC
1 GGGTTTC
4188316 GGGGTATTC
1 -GGGT-TTC
4188325 GGGTTT-
1 GGGTTTC
*
4188331 AGGTTTC
1 GGGTTTC
4188338 -GGTTTC
1 GGGTTTC
4188344 GGGCGTTTTC
1 -GG-G-TTTC
4188354 GGG-TTC
1 GGGTTTC
4188360 GGGTTTC
1 GGGTTTC
4188367 GGGTTTTC
1 GGG-TTTC
4188375 GGGATTTC
1 GGG-TTTC
4188383 GGGTTTC
1 GGGTTTC
*
4188390 GGGGTTC
1 GGGTTTC
4188397 GGGTTTC
1 GGGTTTC
4188404 GGGATTTC
1 GGG-TTTC
4188412 GGG-TTC
1 GGGTTTC
4188418 GGGTTTC
1 GGGTTTC
****
4188425 GGGGGGG
1 GGGTTTC
**
4188432 GGGTGAC
1 GGGTTTC
*
4188439 GGG-TGC
1 GGGTTTC
*
4188445 GAG-TTC
1 GGGTTTC
4188451 GGGATTTC
1 GGG-TTTC
4188459 AGGGTTATC
1 -GGGTT-TC
4188468 GGGTTTCC
1 GGGTTT-C
4188476 GGGTTTC
1 GGGTTTC
4188483 GGGTTTC
1 GGGTTTC
4188490 GGGTTTC
1 GGGTTTC
4188497 GGGTTTC
1 GGGTTTC
4188504 -GGTTTC
1 GGGTTTC
4188510 GGGTTTC
1 GGGTTTC
*
4188517 GGGTTGC
1 GGGTTTC
4188524 -GGTTTC
1 GGGTTTC
4188530 GGAGTTTC
1 GG-GTTTC
4188538 -GGTTTC
1 GGGTTTC
4188544 -GGTTTC
1 GGGTTTC
4188550 GGGTTTC
1 GGGTTTC
4188557 -GGTTTC
1 GGGTTTC
4188563 GGGTTTTC
1 GGG-TTTC
4188571 GGGTTTC
1 GGGTTTC
*
4188578 GGAGTTGAC
1 GG-GTT-TC
*
4188587 AGGTTTC
1 GGGTTTC
4188594 AGGGTTTC
1 -GGGTTTC
4188602 GGGTTTC
1 GGGTTTC
*
4188609 GAGTTTC
1 GGGTTTC
4188616 GGGTTTTC
1 GGG-TTTC
4188624 GGGTTTC
1 GGGTTTC
*
4188631 GGGTCTC
1 GGGTTTC
* *
4188638 GGGTCTA
1 GGGTTTC
4188645 GCGGTTTC
1 G-GGTTTC
4188653 GGGTTTC
1 GGGTTTC
4188660 GGGTTTC
1 GGGTTTC
4188667 AGGGATGTTC
1 -GGG-T-TTC
4188677 GGGTTTC
1 GGGTTTC
4188684 GGGTTTC
1 GGGTTTC
4188691 GGGTTTC
1 GGGTTTC
4188698 -GGTTTC
1 GGGTTTC
4188704 GGGTTTC
1 GGGTTTC
4188711 -GGTTTC
1 GGGTTTC
4188717 GGGTTTC
1 GGGTTTC
4188724 GGGTTTC
1 GGGTTTC
4188731 GGGTTTTTTC
1 GGG---TTTC
4188741 GGGTTTC
1 GGGTTTC
*
4188748 GGGTGTC
1 GGGTTTC
4188755 GGGTTTTC
1 GGG-TTTC
4188763 GGGTTTAC
1 GGGTTT-C
4188771 GGGTTTC
1 GGGTTTC
4188778 -GGTATGTC
1 GGGT-T-TC
4188786 -GGTTTC
1 GGGTTTC
4188792 GGGTTTC
1 GGGTTTC
4188799 AGGGTTTC
1 -GGGTTTC
4188807 GGGTTTC
1 GGGTTTC
4188814 GGGTATTTC
1 GGG--TTTC
4188823 GGGTTTTC
1 GGG-TTTC
4188831 GGAGTTTGTC
1 GG-G-TT-TC
*
4188841 GGGGAGTTC
1 -GGG-TTTC
4188850 GGGGTTTC
1 -GGGTTTC
4188858 GGGTTTC
1 GGGTTTC
*
4188865 GGGTTTTA
1 GGG-TTTC
*
4188873 GGTTTTC
1 GGGTTTC
4188880 AGGAGTTTC
1 -GG-GTTTC
4188889 GGGTTTTC
1 GGG-TTTC
4188897 GGGTATTC
1 GGGT-TTC
4188905 GGGTTTC
1 GGGTTTC
*
4188912 GGTTTTTC
1 GG-GTTTC
4188920 GGGTTTTC
1 GGG-TTTC
4188928 GGGTTTC
1 GGGTTTC
4188935 GGGTTTC
1 GGGTTTC
4188942 GGGGTATTTTTC
1 -GGG----TTTC
4188954 AGGGGTTTC
1 --GGGTTTC
4188963 GGAGTTTTC
1 GG-G-TTTC
*
4188972 GGAGTTGC
1 GG-GTTTC
4188980 AGGGTTTTC
1 -GGG-TTTC
4188989 GGGTTTC
1 GGGTTTC
4188996 GGG-TT-
1 GGGTTTC
4189001 GGGTTTTC
1 GGG-TTTC
4189009 GGGTTTTTC
1 GGG--TTTC
4189018 GGG-TTC
1 GGGTTTC
4189024 GGGTCTTTTC
1 GGG---TTTC
4189034 GGAGTTTC
1 GG-GTTTC
4189042 GGGTTTC
1 GGGTTTC
4189049 GGAGTTTC
1 GG-GTTTC
4189057 GAGGGGTTTCC
1 ---GGGTTT-C
4189068 GGGTATTC
1 GGGT-TTC
4189076 GGGTTAATAC
1 GGGTT--T-C
*
4189086 GGG-TCC
1 GGGTTTC
4189092 GGGTTTC
1 GGGTTTC
*
4189099 GGGATTTTA
1 GGG--TTTC
4189108 GGGTTTC
1 GGGTTTC
4189115 GGGTGTTC
1 GGGT-TTC
4189123 GGGTGTTC
1 GGGT-TTC
4189131 GGG-TTC
1 GGGTTTC
4189137 GGGTTTC
1 GGGTTTC
4189144 GGG-TTC
1 GGGTTTC
4189150 -GGTTTAC
1 GGGTTT-C
*
4189157 GGTTTTC
1 GGGTTTC
4189164 GGGTTTC
1 GGGTTTC
**
4189171 GGGGGTC
1 GGGTTTC
4189178 GGGATTTC
1 GGG-TTTC
4189186 -GGTTTC
1 GGGTTTC
4189192 GGGATTTC
1 GGG-TTTC
4189200 GGGTTTC
1 GGGTTTC
4189207 GGGTTTC
1 GGGTTTC
*
4189214 GGTTTTC
1 GGGTTTC
4189221 GGGTTTC
1 GGGTTTC
4189228 GGGTTTTTTC
1 GGG---TTTC
4189238 GGGTTTC
1 GGGTTTC
4189245 GGGTTTC
1 GGGTTTC
4189252 GGGTTTC
1 GGGTTTC
*
4189259 GTGTTTC
1 GGGTTTC
4189266 GGGTTTC
1 GGGTTTC
4189273 GGGTTTTTC
1 GGG--TTTC
*
4189282 GAGTTTTC
1 G-GGTTTC
*
4189290 GGGGTTC
1 GGGTTTC
4189297 GGGTTTC
1 GGGTTTC
4189304 GGGTTTC
1 GGGTTTC
4189311 -GGTTTC
1 GGGTTTC
4189317 GGGGTTTTTC
1 -GGG--TTTC
4189327 -GGTTTC
1 GGGTTTC
4189333 GGGTTTTC
1 GGG-TTTC
4189341 GGGTTTC
1 GGGTTTC
4189348 -GGTTTC
1 GGGTTTC
4189354 -GGTTTC
1 GGGTTTC
4189360 GGGTTTC
1 GGGTTTC
4189367 GGGTTTC
1 GGGTTTC
4189374 GGAGTTTGC
1 GG-GTTT-C
4189383 GGGTTTAC
1 GGGTTT-C
*
4189391 GGGTGT-
1 GGGTTTC
*
4189397 GGTTTTC
1 GGGTTTC
4189404 GGGTTTC
1 GGGTTTC
4189411 GGGTTTC
1 GGGTTTC
4189418 GGGTTTC
1 GGGTTTC
4189425 GGGTTTC
1 GGGTTTC
4189432 GGGTTTC
1 GGGTTTC
4189439 GGAGTTTC
1 GG-GTTTC
4189447 GGGTTTTC
1 GGG-TTTC
**
4189455 -GGTAGC
1 GGGTTTC
4189461 GGGATTTTC
1 GGG--TTTC
4189470 GGAGTTTC
1 GG-GTTTC
4189478 GGGTTTC
1 GGGTTTC
*
4189485 GGGTTGC
1 GGGTTTC
4189492 GGGTTTTC
1 GGG-TTTC
*
4189500 GGGGTTC
1 GGGTTTC
4189507 GGTGTTTC
1 GG-GTTTC
Statistics
Matches: 8939, Mismatches: 699, Indels: 2033
0.77 0.06 0.17
Matches are distributed among these distances:
4 13 0.00
5 102 0.01
6 1179 0.13
7 4209 0.47
8 2393 0.27
9 722 0.08
10 253 0.03
11 46 0.01
12 16 0.00
13 6 0.00
ACGTcount: A:0.05, C:0.13, G:0.42, T:0.41
Consensus pattern (7 bp):
GGGTTTC
Found at i:4185531 original size:18 final size:19
Alignment explanation
Indices: 4185510--4185546 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
4185500 GGGGGGGTTT
4185510 GTTTTGTTATTTT-TGTTG
1 GTTTTGTTATTTTATGTTG
*
4185528 GTTTTGTTTTTTTATGTTG
1 GTTTTGTTATTTTATGTTG
4185547 CGGTTCGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.05, C:0.00, G:0.22, T:0.73
Consensus pattern (19 bp):
GTTTTGTTATTTTATGTTG
Found at i:4189498 original size:45 final size:42
Alignment explanation
Indices: 4178863--4189514 Score: 5714
Period size: 44 Copynumber: 240.7 Consensus size: 42
4178853 GGGTTTAGGG
* * * *
4178863 TTTCGGGTTTACGGGTTTAGGGTTTAGGGTTTAAGGGATTTAGGGT
1 TTTC-GGTTT-CGGGTTTCGGGTTTCGGGTTT-CGGG-TTTCGGGT
* * ** * *
4178909 TTTAGGGTTTTAGGGTTGAGGGTTTCGGGTTTAGGTTTTCGGG-
1 TTT-CGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* * * *
4178952 TTT-AGTGTCGGGGTGTGCGGGGTTCGGGTTTTCGGGTTTCGGGT
1 TTTCGGTTTC-GGGT-TTCGGGTTTCGGG-TTTCGGGTTTCGGGT
* * * * *
4178996 TATCGTTTTTCGGGGTTC--GTTTAGGGTTTCGGG-TTCAGG-
1 TTTCG-GTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
4179035 TTTCGGGTTTACGGGTTTCGAGGTTTTCGGGTTTCGGG-TTC-GGT
1 TTTC-GGTTT-CGGGTTTCG-GG-TTTCGGGTTTCGGGTTTCGGGT
*
4179079 TTTAGGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGG-
1 TTT--CGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
*
4179122 GTTCGGGTTTCGGAGTTTCGGGTTTCGGGTTTTCGGGGTTTCGGGT
1 TTTC-GGTTTCGG-GTTTCGGGTTTCGGG-TTTC-GGGTTTCGGGT
* * *
4179168 TTACGGGTTTCGGGTGTCGGGGTATCGGGGTTTCGGG-TTCGGGT
1 TTTC-GGTTTCGGGTTTC-GGGTTTC-GGGTTTCGGGTTTCGGGT
*
4179212 TTTCGGTTTCGGGTATCGGGATTTCCGGGTTATCGGGTTTTTCCGGGT
1 TTTCGGTTTCGGGTTTCGGG-TTT-CGGGTT-TCGGG--TTT-CGGGT
*
4179260 TTCCGGGTTTTTCAGGGTTTCGGGATAATTCGGG-TTCGGGTTTCGGG-
1 TTTC-GG--TTTC-GGGTTTCGGG-T--TTCGGGTTTCGGGTTTCGGGT
*
4179307 TGTCGGGATTTTCGGGTTTTCGGGTTTCGAGGTTTC-GGTTTC-GGT
1 TTTC-GG--TTTCGGG-TTTCGGGTTTCG-GGTTTCGGGTTTCGGGT
*
4179352 TTTAGGGTTTCGGGATTTCGGGTTTCGGGTTTCGGG-TTCGGGT
1 TTT-CGGTTTCGGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGT
*
4179395 TTCCGGGTTTCGGG-TTCGGGCTTTCGGGTTTC-GGTTTC-GG-
1 TTTC-GGTTTCGGGTTTCGGG-TTTCGGGTTTCGGGTTTCGGGT
* *
4179435 TTTCGGGTTACGGGTTTCCGGGTTTCGGTATATTCGGGTTTCGGGT
1 TTTC-GGTTTCGGGTTT-CGGGTTTCGG-GT-TTCGGGTTTCGGGT
*
4179481 TTTCGGGTTTCGGGTTTCGGGTTTCGGGTTGCGGGTTTTGGGTCGGGAT
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGG--TT---TCGGG-T
* *
4179530 TTCTGGGTTTC-GGTTTC-GGTTTACGGGTTTCGGGGTTCAGGG-
1 TT-TCGGTTTCGGGTTTCGGGTTT-CGGGTTTCGGGTTTC-GGGT
4179572 TTTCGGGTTTTCGGGGGATTTCGGGTATTCGGGTTTCGGGTTTCGGG-
1 TTTC-GG-TTTC--GGG-TTTCGGGT-TTCGGGTTTCGGGTTTCGGGT
* * * ****** *
4179619 TTTAGTTTTCGGGCTTCAGGGCGTTTCCCCCCCCAAAAAAGGGGCTTCGGGCT
1 TTTCGGTTTCGGGTTTC--GG-GTTTCGGGTTTC-------GGGTTTCGGG-T
*** * * * * ** * *
4179672 TAAGGGCTTAGGG-CT-GCGTGCCGTGTCTTCGGGCTTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGT-TTCGGGTTTCGGGT
* * * * * ** * * * * * *
4179712 CTTCGGGCTTAGGG-CTAGGGCCTCGTGCTTAGGGCTTAGGGC
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* * * * * *
4179754 TTTCGGGCTTTCAGGGCTTAGGGCCTTTAGGGCTT-GGGGTT-GGGC
1 TTTC-GG-TTTC-GGGTTTCGGG--TTTCGGGTTTCGGGTTTCGGGT
** * * * * * *
4179799 TTGGGGCTTGGGGTTT-GGGGTTGGGGTTTGGGGTTT-GGGG
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
** * * * *
4179839 TTGGGGTTT-GGGTTTAAGGGGTTTTGGGGTTGGGGTTT-GGGT
1 TTTCGGTTTCGGGTTT--CGGGTTTCGGGTTTCGGGTTTCGGGT
** * * * *
4179881 TTGGGGTTT-GGGTTTTGGGTTTGGGGTTTGGGGTTATGGGGT
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTT-TCGGGT
* * * * * ** *
4179923 TTTGGGGGTTGGGGTTTAGGGGTTTGGGGTTGGGGGTTATGGGGT
1 TTT-CGGTTTCGGGTTT-CGGGTTTCGGGTTTCGGGTT-TCGGGT
* * * * *
4179968 TTT---TTTGGGGTTT----TTTGGGGATTTGGGGTTTTGGGG
1 TTTCGGTTTCGGGTTTCGGGTTTCGGG-TTTCGGGTTTCGGGT
* * * * * * *
4180004 TTTGGGTTTGGGGTTT-GGGGTTGGGGGTTGGGGTTTGGGGT
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
** * * * * *
4180045 TTGGGAGTTTGGGGTTTGGGGTATTGGGGTGTTGGGGTTTTGGGT
1 TTTCG-GTTTCGGGTTTCGGGT-TTCGGGT-TTCGGGTTTCGGGT
** * * * * *
4180090 GTTGGGGTTTGGGGTTTTGGGGTTTGGGGTTTGGGGTTTGGGTGGT
1 -TTTCGGTTTCGGG-TTTCGGGTTTCGGGTTTCGGGTTT-CG-GGT
* * * * * * *
4180136 TTTGGGGTTTGGGGTTTTGGGTTGGTTGGGTTTGGGGTTTTGGGG
1 TTT-CGGTTTCGGGTTTCGGGTT--TCGGGTTTCGGGTTTCGGGT
* * * * *
4180181 TCTGGGTTTGGGGTTTGGGGTTT-GGGGTT-GGG-TT-GGGT
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* * * * * * *
4180219 TGGGT-GTTTTGGGGTTTTGGGGTTTGGGCGTTTGGGGTTTGGGGTT
1 T--TTCGGTTTCGGG-TTTCGGGTTTCGG-GTTTCGGGTTTCGGG-T
* * * *
4180265 TTTGGGTTT-GGGTTTGGGGTTTGGGGTTT-GGGTTTGGGGT
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
** * * * *
4180305 TTGGGGTGT-GGTGTTTGGGGGTTT-GGGTTGGTTGGGGTGTTTGGGGT
1 TTTCGGTTTCGG-GTTT-CGGGTTTCGGG-T--TT-CGG-GTTTCGGGT
** * * * *
4180352 TTGGGGTTTGGGGTTTGGGGTTTTTGGG-TT-GGGGTT-GGGT
1 TTTCGGTTTCGGGTTTCGGG-TTTCGGGTTTCGGGTTTCGGGT
** * * * * *
4180392 TTGGGGGTTTGGGGTTTGGGGTTT-GTGTTTGGGGTTT-GGGG
1 TT-TCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* * * * * * *
4180433 TTT-GGGTTGGGGTTT-GGG-GTGGGGGTTGGGGTTTGGGGGT
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTT-CGGGT
** * * *
4180473 TTGGGGTTTCGGGTTTGGGGTTTGGGGTTTTGGGGTTTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGG-TTTCGGGTTTCGGGT
4180515 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
*
4180556 TTTCAGGTATTCGGGGTTTCGGAAGTCTTCGTAGG-TTCGGGCTAGTCGGGT
1 TTTC-GGT-TTC-GGGTTTCGG--GT-TTCG--GGTTTCGGG-T-TTCGGGT
*
4180607 AGTTCGGGTATTTCGGGGTATTTCGGGTTTCGGGTTTCGGGTTTCGGGT
1 -TTTC-GG--TTTC-GGG--TTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* *
4180656 TTTACGGGTTCGGGTTTCGGGTTATTTCGGGTTTCGGGTGTCGGG-
1 TTT-CGGTTTCGGGTTTCGGG---TTTCGGGTTTCGGGTTTCGGGT
* * *
4180701 TTTCGGGTTTGCGGGTTTCGGAGTTATC-AGTTTCGGAATTGCGGG-
1 TTTC-GGTTT-CGGGTTTCGG-GTT-TCGGGTTTCGG-GTTTCGGGT
* ** *
4180746 TGTCGAGGTCCCGAGGGTTTCGGGATTCGGGTTTCGGAGTTTTCGGG-
1 TTTC--GGTTTC--GGGTTTCGGGTTTCGGGTTTCGG-G-TTTCGGGT
4180793 TTTCGGCGTTTCGGGGGTTTCGGGTTTCGGGTTTCGGAGTTTCGGGT
1 TTTC-G-GTTTC--GGGTTTCGGGTTTCGGGTTTCGG-GTTTCGGGT
4180840 TTTCGGGTTTC-GGTTTCGGGATTTCGGGGTTTCGGGTTT-GGG-
1 TTTC-GGTTTCGGGTTTCGGG-TTTC-GGGTTTCGGGTTTCGGGT
*
4180882 TTTCGGTTTCTCGGTATTACGGGTTTCGGGTTATC-GGTTTGCGGG-
1 TTTCGGTTTC-GGGT-TT-CGGGTTTCGGGTT-TCGGGTTT-CGGGT
*
4180927 TTTCGGGTTATCGGGTTTTCGGGTTTAGGGTTTTCGGGTTTCGGGT
1 TTTC-GGTT-TCGGG-TTTCGGGTTTCGGG-TTTCGGGTTTCGGGT
*
4180973 TTTCGGGTTTGGGTTTCGTTTCGGGTTTCGGGTTTCGGGTTTCGAGG-
1 TTTC-GGTTTCGG----GTTTCGGGTTTCGGGTTTCGGGTTTCG-GGT
*
4181020 -TTCGTTGTTCAGGGTTTC-GGTTATCGGG-TTCGGGTTTTCGGG-
1 TTTCGGT-TTC-GGGTTTCGGGTT-TCGGGTTTCGGG-TTTCGGGT
*
4181062 TTTCGGGTTTCGGGTTTTCGGGTTTTCGGGTTTAGGGTTTCGGG-
1 TTTC-GGTTTCGGG-TTTCGGG-TTTCGGGTTTCGGGTTTCGGGT
* * * *
4181106 TTTCGGGTTTAGGGTTGCAGGGTTTCGAGGTTTCTGTTTTCGGGGT
1 TTTC-GGTTTCGGGTTTC-GGGTTTCG-GGTTTCGGGTTTC-GGGT
*
4181152 TGTCCGGGTTTCGGGTGTTCGGGTTTCGGGTTTCGGGTTTCGGG-
1 T-TTC-GGTTTCGGGT-TTCGGGTTTCGGGTTTCGGGTTTCGGGT
4181196 TTTCGGTATTC-GGTTTCGGGTTTCGGGTTTCAGGGTTTCGGGT
1 TTTCGGT-TTCGGGTTTCGGGTTTCGGGTTTC-GGGTTTCGGGT
4181239 TTTCGGTTTCGGGTTTCGGGTTTCAGAGGTTTCGGGTTATCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTC-G-GGTTTCGGGTT-TCGGGT
*
4181283 -TTCGGGTTCGGGTTTC-GGTTTGACGGGTTTCGAGGTTTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTT--CGGGTTTCG-GGTTTCGGGT
4181325 TTTCGGGTATTGCGGGTTTCGGGTTATCGGGTTTCCGGGTTTCGGG-
1 TTTC-GGT-TT-CGGGTTTCGGGTT-TCGGGTTT-CGGGTTTCGGGT
*
4181371 TTGCGGTTTCGGGGTTTCGGGTTTCCGGGTTGTCGGGTTTCGGG-
1 TTTCGGTTTC-GGGTTTCGGGTTT-CGGGTT-TCGGGTTTCGGGT
4181415 TTTCGGTTTTCGGGTATTC-GGTTTCGGGTTTTC-GGTTTCGGGT
1 TTTCGG-TTTCGGGT-TTCGGGTTTCGGG-TTTCGGGTTTCGGGT
*
4181458 TTATCGGGTTGCGGGTTTCGGGTTTC-GGTTTACAGGGTTTCGGG-
1 TT-TC-GGTTTCGGGTTTCGGGTTTCGGGTTT-C-GGGTTTCGGGT
*
4181502 TTTCGGGTGTTCAGGGTTTTC-GGTTTAGGG-TTCGGGTTTCGGGT
1 TTTC-GGT-TTC-GGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* * *
4181546 ATTCGGGTTCGGGTGTTCTGGCGGGTTTCGGGTTTCGAGTTTCGGG-
1 TTTCGGTTTC-GG-GTT-T--CGGGTTTCGGGTTTCGGGTTTCGGGT
*
4181592 TTTCGGGTGTACGGGTTTTCGGGTTTCAGGGATTGTCGGG-TTCGGGT
1 TTTC-GGT-TTCGGG-TTTCGGGTTTC-GGG-TT-TCGGGTTTCGGGT
*
4181639 ATTCGGTTTTACGGGTTTTCGGAAGTTTCGGGTTTCGAGGTATTCGGG-
1 TTTCGG-TTT-CGGG-TTTCGG--GTTTCGGGTTTCG-GGT-TTCGGGT
4181687 TTTCGGGTTTACGGG-TTCGGGTTTCGGG-TTCGAGGTTTCGTGG-
1 TTTC-GGTTT-CGGGTTTCGGGTTTCGGGTTTCG-GGTTTCG-GGT
4181730 TTTCGGAGGTTGTCGGGTTTCGGGTTTCGGGTTTCGGAGTTTCGGGT
1 TTTC---GGTT-TCGGGTTTCGGGTTTCGGGTTTCGG-GTTTCGGGT
*
4181777 TTTCGAGGGTATCGGG-TTCGGGTTTCGGGTTTCGGGTTT-GAGGT
1 TTTC---GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCG-GGT
* *
4181821 TATCGGGTTTTC-GGTTCCGGGTTTC-GGTTTCGGGTTTCGGAG-
1 TTTC-GG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGG-GT
4181863 TTTCGGGTTTAACAGGAGTTTCGGGGTTTCAGGGTTTCGGG-TTCAGGG-
1 TTTC-GGTTT--C-GG-GTTTC-GGGTTTC-GGGTTTCGGGTTTC-GGGT
* *
4181911 TTTCGGAGTTGCGGGTTTTCGGGTTGTCGGGTTTCGGGTTTCGGGG
1 TTTC-G-GTTTCGGG-TTTCGGGTT-TCGGGTTTCGGGTTTCGGGT
* * *
4181957 TTTGGGGTAC-GGTTTCGGGGTTTTACGGGTTTTCGGGTTTCGGG-
1 TTTCGGTTTCGGGTTTC-GGG-TTT-CGGG-TTTCGGGTTTCGGGT
*
4182001 -TTCGGGTTTCGGGTTTTTCGGTTTTC-GGTTTCGGGTTTTCGGGGT
1 TTTC-GGTTTCGGG--TTTCGGGTTTCGGGTTTCGGG-TTTC-GGGT
* *
4182046 GTTCGGTATTCGCGGTTTCGAGGTTTCGGG-TGCGGGTTTCGGG-
1 TTTCGGT-TTCG-GGTTTCG-GGTTTCGGGTTTCGGGTTTCGGGT
*
4182089 TTTCGGGTTCGGGGTTTCGTGGTTTCGGGTTTTCGGGATTGTCGGG-
1 TTTCGGTTTC-GGGTTTCG-GGTTTCGGG-TTTCGGG-TT-TCGGGT
* *
4182135 TTTC-G----GGGTTTCGGGTTGCGGGTTGCGGGTTTCAGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTC-GGGT
4182172 TTTCGGGTTT-GGGTTTCGGGTTTCGGGTATTCGGGTTTC-GG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGT-TTCGGGTTTCGGGT
* *
4182213 TTTCGGGTTTCGGGTTTCGGGTTTC-GGTTTCGGTATTTCGGGA
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGG-GTTTCGGGT
*
4182256 TTTCGGGTTTCGGG-TTCGGGTTTCGGGTTTCGGGGTTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
*
4182297 -TTCGG-TTCGGGTGTCGGGTTGTCGGGTTTCGGGTTTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTT-TCGGGTTTCGGGTTTCGGGT
4182337 TTTCGGTATTCGGGTTTTCGGGACTTTCGGGTTTCGGGTTTC-GG-
1 TTTCGGT-TTCGGG-TTTCGGG--TTTCGGGTTTCGGGTTTCGGGT
*
4182381 -TTCGGGTTTCAGGGTTTTCGGGTTTTGGGTTTC-GGTTTCGGG-
1 TTTC-GGTTTC-GGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGT
*
4182423 TTTCGGTTTCGGGGTTTCGGGTTTACGGGTATTTTCGGAGGATTTAGGG-
1 TTTCGGTTTC-GGGTTTCGGGTTT-CGGG---TTTC-G-GG-TTTCGGGT
**
4182472 -GGCGGGATTTCGGGTATTCGGGTTTCGGGTTTCGCGG-TTCGGG-
1 TTTC-GG-TTTCGGGT-TTCGGGTTTCGGGTTTCG-GGTTTCGGGT
4182515 TTTCGGTTTCCGGGGTATTCGGGTTTTCGGGTATTCGGG-TTCGGG-
1 TTTCGGTTT-C-GGGT-TTCGGG-TTTCGGGT-TTCGGGTTTCGGGT
4182560 TTTCGGTATTCGGGTTTCGGGTATTC-GGTCATT-GGCAGTTTTCGGG-
1 TTTCGGT-TTCGGGTTTCGGGT-TTCGGGT--TTCGG--G-TTTCGGGT
4182606 TTTCGGTATTCGGGTTTTCGGAGTTTCGGGTTATCGGGTTTTCGGG-
1 TTTCGGT-TTCGGG-TTTCGG-GTTTCGGGTT-TCGGG-TTTCGGGT
*
4182652 -TTCGGGTTTGCGGGTTTCGGGTATTCGGGTTTACGGGGTTCGGG-
1 TTTC-GGTTT-CGGGTTTCGGGT-TTCGGGTTT-CGGGTTTCGGGT
* * * *
4182696 -TTCGGGTTATCGGGTTGCAGGTTT-GGGTTGC-GGTTCTCCGGT
1 TTTC-GGTT-TCGGGTTTCGGGTTTCGGGTTTCGGGTT-TCGGGT
* *
4182738 TGATCGGGGTTTCGGGTGTTCGGGTTTTCGGGTATTCGGG-TTCGTGT
1 T-TTC--GGTTTCGGGT-TTCGGG-TTTCGGGT-TTCGGGTTTCGGGT
* * *
4182785 ATTTCGGGTTCGGGGTTCGGGTTTC-GGTTGCGGGTTTCCGGG-
1 -TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTT-CGGGT
4182827 TTTCGGTTTTCGGGTTTCTGGAGTGTGTCGGGATTTCGGGTTTACCGGGT
1 TTTCGG-TTTCGGGTTTC-GG-GT-T-TCGGG-TTTCGGGTTT--CGGGT
* *
4182877 TTCCGGGTTTTCGGGTATATTCGGAGTTTCGGGTTTCGGGTTGC-GGT
1 TTTC-GG-TTTCGGG--T-TTCGG-GTTTCGGGTTTCGGGTTTCGGGT
* *
4182924 GTTCGGGTTTCGGGTTTACGGTGATATCGGGTTATGCGAGGGTTTCAGGG-
1 TTTC-GGTTTCGGGTTT-CGG-G-TTTCGGGTT-T-C--GGGTTTC-GGGT
*
4182974 TTGCGGTTTTCGAGGTTTCGGGTTTCGGGTTTGCGGGTTTCGGGGT
1 TTTCGG-TTTCG-GGTTTCGGGTTTCGGGTTT-CGGGTTTC-GGGT
* * *
4183020 TTACGGGTTTCCGGGTGTCGGGTTATCGGGGTTGCGGGTTTCGGGGT
1 TTTC-GGTTT-CGGGTTTCGGGTT-TC-GGGTTTCGGGTTTC-GGGT
* * *
4183067 TTACGGGTTTCGGGTTTCGGGTTTTCGGGTATTTAAGGGTTACGGG-
1 TTTC-GGTTTCGGGTTTCGGG-TTTCGGG--TTT-CGGGTTTCGGGT
*
4183113 GTTCGGGTTTC-GGTTTCGGG-TTCGGG-TTCGAGGTTTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCG-GGTTTCGGGT
* *
4183153 -TTCGGGTTGCGGGTTTTCGGGTGTACGGGTTTCGGGTTTCGGG-
1 TTTC-GGTTTCGGG-TTTCGGGT-TTCGGGTTTCGGGTTTCGGGT
* *
4183196 TTTCGGTTCGGTTCGGTTTTCGGGGATTCGGGTTTCGGGTTTCGGG-
1 TTTCGG-T---TTCGGGTTTC-GGGTTTCGGGTTTCGGGTTTCGGGT
* *
4183242 GTTCGGTTTTCGGTTTTCCGGGTTTCGGGTTTCGGGGTTTCGGGT
1 TTTCGG-TTTCGGGTTT-CGGGTTTCGGGTTTC-GGGTTTCGGGT
* *
4183287 TCT-GGTTTCGGGTTTCGGGTTTC-GGTTGCGGGTTTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
4183326 TTTCGGTATTCGGAGTTTCGAGGTTTCGGGTTTTCGGGTTTCGGGGT
1 TTTCGGT-TTCGG-GTTTCG-GGTTTCGGG-TTTCGGGTTTC-GGGT
4183373 TTTACTGGATTTCGGGTTTTCGAGGTTTCGGGTTTCGGGATTTCGGG-
1 TTT-C-GG-TTTCGGG-TTTCG-GGTTTCGGGTTTCGGG-TTTCGGGT
*
4183420 -TTCGGGTTTTCTCGGGTTTCGGGGTTTTCGGGTTTTCGTTTCGGGTTCGGGT
1 TTTC-GG--TT-TCGGGTTTC-GGG-TTTCGGG-TTTCG----GGTTTCGGGT
*
4183472 TTTCGGTTTCGGGTTTCGGGTTTC-GGTTTCGGGGTTGCCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTC-GGGTT-TCGGGT
4183514 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTTCGGGTTTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGG-TTTCGGGTTTCGGGT
*
4183556 TTTCGGGTTT-AGGTTATACGGG-TTCGGGTTTCGGGTTTCGGG-
1 TTTC-GGTTTCGGGTT-T-CGGGTTTCGGGTTTCGGGTTTCGGGT
* * *
4183598 TTTCGGAGTTTCGGGTTTAGGGTTTAGGGTTTATAGGGTTTGCGGG-
1 TTTC-G-GTTTCGGGTTTCGGGTTTCGGG-TT-TCGGGTTT-CGGGT
* * * * *
4183644 TTTAGGTTTTCGGGTTTTAGGGTTTAGGGTTTAGGGTGAGGTTTCAGGT
1 TTTCGG-TTTCGGG-TTTCGGGTTTCGGGTTT----CG-GGTTTCGGGT
*
4183693 TTTCGGGTTTCGGAGTTT-AGGTTTC-GGTTTCGGGTTTC-GG-
1 TTTC-GGTTTCGG-GTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
*
4183733 TTTCGGTTTCGGGTTTCGGGTTTCGGAGTTTAGGGTTTCGGGT
1 TTTCGGTTTCGGGTTTCGGGTTTCGG-GTTTCGGGTTTCGGGT
* * *
4183776 TTTAGGGTTTCGGGTTTCAGGG-TTAGGGTTT-AGGTTTCGGGT
1 TTT-CGGTTTCGGGTTTC-GGGTTTCGGGTTTCGGGTTTCGGGT
* *
4183818 TTACGGGTTTCGGGTTTCGGGTTTCGGGTTTAAGGGTTTCGGTGT
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTT-CGGGTTTCGG-GT
* *
4183863 TTTGGGTATTCGGGTTTCGGGTTTATCGGGTTTC-GGTTTAGGG-
1 TTTCGGT-TTCGGGTTTCGGG-TT-TCGGGTTTCGGGTTTCGGGT
* *
4183906 TTTAGGTTTCGGG-TTCGGGATTTTAGGGTTTTCGGGTTTCGGG-
1 TTTCGGTTTCGGGTTTCGGG--TTTCGGG-TTTCGGGTTTCGGGT
4183949 TTTCGGGTTTTCGGGATTTTCGGG-TTCGGGTTTCGGGTTTCGGG-
1 TTTC-GG-TTTCGGG--TTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* **
4183993 TTGCGGGTTTC-GGTTTCGGGTTT-GGGTTGAGGGTTTCGGGATT
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGG--T
* * * *
4184036 TATTCGGTTTTCGGGTTTTTCGGGGGTTAGTGTTTAGGGTTTCGGG-
1 T-TTCGG-TTTCGGG--TTTC-GGGTTTCGGGTTTCGGGTTTCGGGT
* *
4184082 TTTCGGTTTCGGGTTTCGGGTTTC-GGTTTAGGGTTTCCGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
4184122 TTTCGGGTTT--GGTATTCGGGTTT-GGGTATTCGGGTTATCGGG-
1 TTTC-GGTTTCGGGT-TTCGGGTTTCGGGT-TTCGGGTT-TCGGGT
* *
4184164 TTTCGGGTTTCGGGTTTCGGGGTTCTGGTTTCGGGTTTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
4184206 TTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCAGGGTGTTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTC-GGGT-TTCGGGT
4184250 TTTCGGGAATTTC-GGTTTCGGGTTGTCGGGGTATTTACGGGTTTCGGG-
1 TTTC-GG--TTTCGGGTTTCGGGTT-TC-GGG--TTT-CGGGTTTCGGGT
*
4184298 TTTCGGTTTC-GGTTGTAGGGTTTCCGGGTTTTCGGGTTTCGGG-
1 TTTCGGTTTCGGGTT-TCGGGTTT-CGGG-TTTCGGGTTTCGGGT
*
4184341 TTTCGGTTTGCGGGTTTACGGGGTTCGGG-TTCGGGTTTACGGGT
1 TTTCGGTTT-CGGGTTT-CGGGTTTCGGGTTTCGGGTTT-CGGGT
** * *
4184385 TTAGGGTCTTCGGGTTTTGGGTATCGGGGTTTTCGGGTTTCGGGT
1 TTTCGGT-TTCGGGTTTCGGGTTTC-GGG-TTTCGGGTTTCGGGT
* * *
4184430 GTTCGGTTTCGGGTTTTAGGGTTTCGGGTTTC-GGTTTCGGGG
1 TTTCGGTTTCGGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* *
4184472 TTGCGGTTTTTC-GGTTTGCGGGTTTCGGGGTTTTACGGTTTTCGGG-
1 TTTCGG--TTTCGGGTTT-CGGGTTTC-GGG-TTT-CGGGTTTCGGGT
4184518 TTTCGGGTATTCGGGTTTCGGGTTTC-GGTTTCGGGTTTCGGG-
1 TTTC-GGT-TTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* *
4184560 TTTCGGGGTTCGGGTTTTCGGAGTGTC-GGTTTCGGGTTTCGGG-
1 TTTC-GGTTTCGGG-TTTCGG-GTTTCGGGTTTCGGGTTTCGGGT
* * *
4184603 TTTAGG-TTCGGGTTTCGGGTTTAGGGGTTCGGGTTTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* *
4184643 TTGCGGTTTCGGGTTTCGGGTTT-GGGTTGTTTGCGGTTTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGG-T-TTCG-GGTTTCGGGT
* **
4184686 TTTCGGGATTTCGGATGCCGGGTTTCGGGATTTTC-GGTTTC-GG-
1 TTTC-GG-TTTCGGGTTTCGGGTTTCGGG--TTTCGGGTTTCGGGT
*
4184729 TTTCGGGTTTCGGGTTTCGGGTTTCAGGGTTTTCGGGATTCGGGT
1 TTTC-GGTTTCGGGTTTCGGGTTTC-GGG-TTTCGGGTTTCGGGT
* *
4184774 TTTCGGTTGCGGGTTTCGGGTTTCGGGTTTCTGGTTTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
** *
4184815 TTAGGGTTTAGGGTTTTCGGGTTTC-GGTTTCGGGTTTCGGGT
1 TTTCGGTTTCGGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* ** **** ** ** *** *
4184857 ATTCGGGTTTCGGG-CACAAACTGAGGG-AACGAAGAAGAAGCGCACAGT
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCG--G--GTTTCG---GGT
*
4184905 TTTCGGGTTGACGGGTTTCGGGTTTGCGGGTTTCGGGTTCTCGGG-
1 TTTC-GGTT-TCGGGTTTCGGGTTT-CGGGTTTCGGGTT-TCGGGT
* *
4184950 TTTCGGGTTCGGGTTTC-GGTTTAGGGTTTC-GGTTTCCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTT-CGGGT
* **
4184990 TTTCGGGGTTCGGGTGGCGGGTTTCGGGTTTCGGGTTATTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGG-T-TTCGGGT
* * *
4185034 TGTCGGGTTTCGGGTTATCGGGTTGCAGGGTTATCAAGGGTTTCAGGT
1 TTTC-GGTTTCGGGTT-TCGGGTTTC-GGGTT-TC--GGGTTTCGGGT
*
4185082 TTTCGGGTTTCGGG-TTCGGGTTTCGGAG-TTCGGG-TTCGGAGG
1 TTTC-GGTTTCGGGTTTCGGGTTTCGG-GTTTCGGGTTTCGG-GT
*
4185124 TTACGGTTTCGGGTTTCGGGTTTCGGGTTTC-GGTTTC-GG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
4185163 TTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCAGGG-TTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTC-GGGTTTCGGGT
*
4185205 TTTCGGTTTCAGGGGTTTCGGGTTATCGGGTTTCGGGGTTCGGG-
1 TTTCGGTTTC--GGGTTTCGGGTT-TCGGGTTTCGGGTTTCGGGT
* * *
4185249 TTGCGGGTTAGGG-TTCGGG-TTCGGGTTTTCGGGTTTCGGGAT
1 TTTCGGTTTCGGGTTTCGGGTTTCGGG-TTTCGGGTTTCGGG-T
* * *
4185291 ATGTCGGGTTATCGGGTTGCGGGATTTCATGGTTTCGGG-TTCGGG-
1 -TTTC-GGTT-TCGGGTTTCGGG-TTTC-GGGTTTCGGGTTTCGGGT
* *
4185336 TTTC-GTTTC-GGTTATAC-GGTTTCGGGTTTC-TGTTGCGGGT
1 TTTCGGTTTCGGGTT-T-CGGGTTTCGGGTTTCGGGTTTCGGGT
*
4185376 ATTCGGGATTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTATCAGGG-
1 TTTC-GG--TTTCGGGTTTCGGGTTTCGGGTTTCGGGTT-TC-GGGT
*
4185422 TTTCGGGTTCGGGTTTGCGGGTTTCGGGTTTCGGGTTTCGGG-
1 TTTCGGTTTCGGGTTT-CGGGTTTCGGGTTTCGGGTTTCGGGT
* *
4185464 TTTCGGTTACCGGGTTTCGGGTGTTCGGGTTTGCGAGGGGGGGTTT--GTT
1 TTTCGGTT-TCGGGTTTCGGGT-TTCGGGTTT-C------GGGTTTCGGGT
*** * * ** *** *
4185513 TTGTTATTTTTGTTGGTTTTGTTTTTTTATGTTGC-GG-TTCGGGT
1 TT-TCGGTTTCG--GGTTTCG-GGTTTCGGGTTTCGGGTTTCGGGT
* * **
4185557 TTACAGGGGTT--GGTTT--TTTTTCGGGTTTGCGGGTTTCGGGT
1 TTTC--GGTTTCGGGTTTCGGGTTTCGGGTTT-CGGGTTTCGGGT
* *
4185598 TATCGGGTTTCGGGGTTACGGG-TTCGGGTTTC-GGTTTCGGG-
1 TTTC-GGTTTC-GGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
4185639 TTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTTC-GGTTTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGG-TTTCGGGTTTCGGGT
* *
4185681 GTTCGGGGTTTTTCGGGTTTC-GGTATTCGGGTTTCGGGGTTC-GG-
1 TTTC--GG--TTTCGGGTTTCGGGT-TTCGGGTTTCGGGTTTCGGGT
4185725 TTTCGGTTCTCGGAGTTTTCGGGTTTCGGGTTTC-GGTATTCGGGGT
1 TTTCGGTT-TCGG-G-TTTCGGGTTTCGGGTTTCGGGT-TTC-GGGT
** ** *
4185771 TGCCGGGTTTCGGAGTTTCGGGTTGAGGTTTTCAGGGTTTCCGGGT
1 TTTC-GGTTTCGG-GTTTCGGGTTTCGGGTTTC-GGGTTT-CGGGT
*
4185817 TGTCGGTTTC-GGTTTCGGGTTTCGGGATTTCGGGTTAGTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGG-TTTCGGGTT--TCGGGT
4185860 TTTCGAGGTTTCGGGTTTCGGGTTT-GGGTTTCGGGTTTCGGAG-
1 TTTC--GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGG-GT
* *
4185903 -TTCGGTTTCGTGGGTTTCGGGGTTTCGGGGTTTCGGGGTTGCGGGA
1 TTTCGGTTTC--GGGTTTC-GGGTTTC-GGGTTTC-GGGTTTCGGGT
4185949 TTTCGGGTTTTGACCCGGG-TTCGGG-TTCGGGTTTC-GGTTTCGAGG-
1 TTTC-GG-TTT----CGGGTTTCGGGTTTCGGGTTTCGGGTTTCG-GGT
*
4185994 TTTCGGTTTATC-GGTTTCGAGTTTCGGGTTTACGGGTTTCGGG-
1 TTTCGG-TT-TCGGGTTTCGGGTTTCGGGTTT-CGGGTTTCGGGT
*
4186037 TTTCGGGTTCGGGTTATCGGGTTTCGGGTTTCGGGTTTCGGGT
1 TTTCGGTTTCGGGTT-TCGGGTTTCGGGTTTCGGGTTTCGGGT
4186080 TTTCGGGTTATCGGG-TTCGGG-TTCGGGGTTTCGGGTTTACGGGT
1 TTTC-GGTT-TCGGGTTTCGGGTTTC-GGGTTTCGGGTTT-CGGGT
4186124 TTTCGGGTTTCGGGGTTTCGGG-TTCGGGTTTCGGGTTTCGGG-
1 TTTC-GGTTTC-GGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
4186166 TTTCGGGTTTCGGG-TTC-GGTTTC-GGTATTC-GGTTTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGT-TTCGGGTTTCGGGT
*
4186205 TTTCGGGTTCGGAGTTTCGGGTTTCGGGTTTTCGGGTTTCGAGG-
1 TTTCGGTTTCGG-GTTTCGGGTTTCGGG-TTTCGGGTTTCG-GGT
* *
4186249 GTTCGGTTGCGGGTTTCGAGGTTTCGGG-TTCGGGATTTCGGG-
1 TTTCGGTTTCGGGTTTCG-GGTTTCGGGTTTCGGG-TTTCGGGT
* *
4186291 TTTCGGGTCTTCGGGATTGCGGGTTTCGGGTTTCGGTTTTCGGG-
1 TTTC-GGT-TTCGGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* * * * *
4186335 TTTCGGGGTTAGGGTTTCGGGTTGC-GGTTCTCGGGTTGCGCGGA
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTT-TCGGGTTTCG-GGT
**
4186379 TTTCGGGTTTCGGGTTGGGGGTTTCGGGTTTCGGGTTT-GGGT
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* * *
4186421 TTCTGGGGTTTCAGGGTTTCCGGGTTTTCCGGGTTGACAGGG-TTCGCGAT
1 TT-T-CGGTTTC-GGGTTT-CGGG-TTT-CGGGTT-TC-GGGTTTCG-GGT
* * *
4186471 ATTGGGTTTCGGGTTTCGGG-TTC-GGTTT-GGG-TTCGGGA
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
*
4186509 TTACGGGTTTGCGGGTTTTCGGGTTTCGGGTTTCGGG-TTCGGG-
1 TTTC-GGTTT-CGGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* *
4186552 TTTCGGGTAATTC-GGTTTCGTGTTATACGGATTTCGGGTTTCGGTGT
1 TTTC-GGT--TTCGGGTTTCGGGTT-T-CGGGTTTCGGGTTTCGG-GT
* * *
4186599 TTCCGGGTTTCAGGTTTTCGGGTTTCGGGTTTCTGGTTTCGGG-
1 TTTC-GGTTTC-GGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* *
4186642 TTTCGGTTTCGGGTTTCGAGGGGTTGCGAGTTTCGGGAAGTTTCGGGT
1 TTTCGGTTTCGGGTTTC---GGGTTTCGGGTTTC-GG--GTTTCGGGT
* *
4186690 ATTTCGGGGTTT-GCGGTTTAGGGTTTCGGGGTTCGGGTTTCGGAGT
1 -TTTC--GGTTTCG-GGTTTCGGGTTTCGGGTTTCGGGTTTCGG-GT
* * *
4186736 ATGCGGTGATCAGGGTTTCGGGTTTCGGTTCGGTTTTCGGGTTTCGGGT
1 TTTCGGT-TTC-GGGTTTCGGGTTTC-G---GG-TTTCGGGTTTCGGGT
* *
4186785 TTGCGGGTTTTCGGGTTTCGAGGTTTCGGGTTTCGGGTTTACCGG-
1 TTTC-GG-TTTCGGGTTTCG-GGTTTCGGGTTTCGGGTTT-CGGGT
4186830 TTTCGGTTTTCGGGTTTCGGGTTTCGGGGTTTTCTGGGTTTCGGGT
1 TTTCGG-TTTCGGGTTTCGGGTTTC-GGG-TTTC-GGGTTTCGGGT
* * * *
4186876 TTCTGGGTTTCCGGTTTCGGGATTTC--GTGTCGGAGTTTCGGAGAA
1 TT-TCGGTTTCGGGTTTCGGG-TTTCGGGTTTCGG-GTTTCGG-G-T
*
4186921 TTTCGGTTTC-GGTTTCGGGTTTCGGGTTTTCGGAGGTTCGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGG-TTTCGG-GTTTCGGGT
*
4186963 -TTCGGGTTTTCGGGGTTGCGGGTTTCCGGGTTT-GCGG-TTCGGG-
1 TTTC-GG-TTTC-GGGTTTCGGGTTT-CGGGTTTCG-GGTTTCGGGT
4187006 TTTCGGGTTTCGGGTTTCGGGTTTCGGGGTTTCAGGGGATTTCGGGT
1 TTTC-GGTTTCGGGTTTCGGGTTTC-GGGTTTC--GGG-TTTCGGGT
**
4187053 TCGCAGGTTTCCGGGTTTCCGTTTTGGTTTCGGGTTTCGGGTTTCGGG-
1 TTTC-GGTTT-CGGGTTT-CG----GGTTTCGGGTTTCGGGTTTCGGGT
4187101 TTTCGGGTTTCCGGGTTTC-GG-TTCGGGTTTTCGGGTTTCGGG-
1 TTTC-GGTTT-CGGGTTTCGGGTTTCGGG-TTTCGGGTTTCGGGT
* *
4187143 TTTCGGGTTGCGGGATTTCGGGTGTCGGGTTTCGGGTTTAGCGGG-
1 TTTC-GGTTTCGGG-TTTCGGGTTTCGGGTTTCGGGTTT--CGGGT
*
4187188 TTTCGAGGGGTTCGGGTTTCGAGGTATTCCGGGTTTTCGGGTTTCGGGT
1 TTTC---GGTTTCGGGTTTCG-GGT-TT-CGGG-TTTCGGGTTTCGGGT
*
4187237 TTTCAGGGTTTCGGGTTTGCGGGTTTCCGGGTTGTCGGATTTTACGGGT
1 TTTC--GGTTTCGGGTTT-CGGGTTT-CGGGTT-TCGG-GTTT-CGGGT
*
4187286 TTGCGGGTTTC-GGTTTCGGGTTTTATCGGGTTTCGGGTTTCGGG-
1 TTTC-GGTTTCGGGTTTCGGG--TT-TCGGGTTTCGGGTTTCGGGT
* * *
4187330 TTTCCGTGTTCGGGGTTTCGGG-TTCCGGTTTCGGGTTTTGGGT
1 TTTCGGT-TTC-GGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
*
4187373 TTTCGGGTTTCGGATTTCGGGTTTGCGGGTTTCGGGTTTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTT-CGGGTTTCGGGTTTCGGGT
4187416 TTTCGGGTTTCGGGTTTCGGGTTTC-GGTTTCGGGTTTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
** * *
4187457 TTTCGGGTTTCGGGGTGCCCACGGGTTTCGCGTTTCGGGATTTAGGAG-
1 TTTC-GGTTTC-GGGT---TTCGGGTTTCGGGTTTCGGG-TTTCGG-GT
* *
4187505 TTTCGGGTTTACGGGGTTCGGTTTTCGGAGTTATCGGGTTATCAGGG-
1 TTTC-GGTTT-CGGGTTTCGGGTTTCGG-GTT-TCGGGTT-TC-GGGT
* *
4187552 TTTCGGGGTTTCGGGTTTCGTGTTTAGGGTTTTCGGGTTTCGGGT
1 TTTC--GGTTTCGGGTTTCGGGTTTCGGG-TTTCGGGTTTCGGGT
4187597 TTTCGGGTTATTCGGGTTTCGAGGTTTTCGGGTTTTC-GGTTTCGGGT
1 TTTC-GG-T-TTCGGGTTTCG-GG-TTTCGGG-TTTCGGGTTTCGGGT
* * *
4187644 TAATCCGGGTTTCGGGTTTTCGTG-TACGGGGTTTCGGGTTTCGGG-
1 T--TTC-GGTTTCGGG-TTTCGGGTTTC-GGGTTTCGGGTTTCGGGT
* *
4187689 TTACAGGGTTTACGGGTTTCGAGGTTTTGGAGATTTTCGGGTTTCGGG-
1 TTTC--GGTTT-CGGGTTTCG-GGTTTCGG-G--TTTCGGGTTTCGGGT
4187737 TTTCGGGTTTCGGG-TTCGGGTTTCGGGTTTCGGGTTTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
*
4187778 -TTCGGGTTTCGGGTTTACGGGATGTCGGGTTTCGGGTTTCGGGT
1 TTTC-GGTTTCGGGTTT-CGGG-TTTCGGGTTTCGGGTTTCGGGT
*
4187822 TTCGCGGGGTGTTC-GGTTTCGGGTTATC-GGTTTCGGGTTTC-GGT
1 TT-TC--GGT-TTCGGGTTTCGGGTT-TCGGGTTTCGGGTTTCGGGT
* * * *
4187866 TTACGGGTTTCGGGAGTTCGGGTTTTCGGGTTTCGGGTATC---A
1 TTTC-GGTTTCGGG-TTTCGGG-TTTCGGGTTTCGGGTTTCGGGT
*
4187908 TTTCGGGTTTCGGGTTTAGGGTTTCGGGTTTC-GGTTTCCGAGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTT-CG-GGT
* *
4187951 TTTCGGGTTTTCGAAGGTTTCGGTCTTTCGGGTGTTTCGGGGTTCCGGG-
1 TTTC-GG-TTTCG--GGTTTCGG-GTTTC-GG-GTTTC-GGGTTTCGGGT
*
4188000 TTTCGGTTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTGCGGG-
1 TTTCGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* * *
4188042 TTTCGGTTTCGAGGTGTCGGTTTTCAAGGGTTTCGGGTTTATCGGGG
1 TTTCGGTTTCG-GGTTTCGGGTTTC--GGGTTTCGGG-TT-TCGGGT
* * *
4188089 TTGCGGGTTCGGGTTTAGGGTTTCGGGTTTCAGGGTTTTCGGGT
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTC-GGG-TTTCGGGT
*
4188133 TTCTGGGGGGTATTCGGGTTTCGGAGTTTCGGGTTTCGGGTTTTTCGGG-
1 TT-T---CGGT-TTCGGGTTTCGG-GTTTCGGGTTTCGGG--TTTCGGGT
* * * *
4188182 TTGCGGGTTCTTCCGGGTTTCAGGATTCGAGGTTTCGGGTTGCGGGTT
1 TTTC-GG-T-TT-CGGGTTTCGGGTTTCG-GGTTTCGGGTTTCGGG-T
4188230 TTTCGCGGTTTCGGGGTTTCGGG-TTCGGG-TTCAGGGATTATCGGG-
1 TTT--CGGTTTC-GGGTTTCGGGTTTCGGGTTTC-GGG-TT-TCGGGT
4188275 TTTCGGGTTTCAGGGTTTCGGGTTTCGAGGTTTCGGGTTTCGGGGT
1 TTTC-GGTTTC-GGGTTTCGGGTTTCG-GGTTTCGGGTTTC-GGGT
* *
4188321 ATTCGGGTTT-AGGTTTC-GGTTTCGGGCGTTTTCGGG-TTCGGG-
1 TTTC-GGTTTCGGGTTTCGGGTTTC-GG-G-TTTCGGGTTTCGGGT
* *
4188363 TTTCGGGTTTTCGGGATTTCGGGTTTCGGGGTTCGGGTTTCGGGA
1 TTTC-GG-TTTCGGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* **** ** *
4188408 TTTCGGGTTCGGGTTTCGGGGGGGGGGTGACGGGTGCGAGTTCGGGA
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT-----TTCGGGT
4188455 TTTCAGGGTTATCGGGTTTCCGGGTTTCGGGTTTCGGGTTTCGGG-
1 TTTC--GGTT-TCGGGTTT-CGGGTTTCGGGTTTCGGGTTTCGGGT
*
4188500 TTTCGGTTTCGGGTTTCGGGTTGC-GGTTTCGGAGTTTC-GG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGG-GTTTCGGGT
4188540 TTTCGGTTTCGGGTTTC-GGTTTCGGGTTTTCGGGTTTCGGAGT
1 TTTCGGTTTCGGGTTTCGGGTTTCGGG-TTTCGGGTTTCGG-GT
** *
4188583 TGACAGGTTTCAGGGTTTCGGGTTTCGAGTTTCGGGTTTTCGGG-
1 TTTC-GGTTTC-GGGTTTCGGGTTTCGGGTTTCGGG-TTTCGGGT
* * *
4188627 TTTCGGGTCTCGGGTCTAGCGGTTTCGGGTTTCGGGTTTCAGGGAT
1 TTTC-GGTTTCGGGTTTCG-GGTTTCGGGTTTCGGGTTTC-GGG-T
*
4188673 GTTCGGGTTTCGGGTTTCGGGTTTC-GGTTTCGGGTTTC-GG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
*
4188713 TTTCGGGTTTCGGGTTTCGGGTTTTTTCGGGTTTCGGGTGTCGGGT
1 TTTC-GGTTTCGGGTTTCGGG---TTTCGGGTTTCGGGTTTCGGGT
4188759 TTTCGGGTTTACGGGTTTC-GGTATGTC-GGTTTCGGGTTTCAGGG-
1 TTTC-GGTTT-CGGGTTTCGGGT-T-TCGGGTTTCGGGTTTC-GGGT
* *
4188803 TTTCGGGTTTCGGGTATTTCGGGTTTTCGGAGTTTGTCGGGGAGTTCGGGG
1 TTTC-GGTTTCGGG--TTTCGGG-TTTCGG-G-TT-TC-GGG-TTTCGGGT
* *
4188854 TTTCGGGTTTCGGGTTTTAGGTTTTCAGGAGTTTCGGGTTTTCGGGT
1 TTTC-GGTTTCGGG-TTTCGGGTTTC-GG-GTTTCGGG-TTTCGGGT
* *
4188901 ATTCGGGTTTCGGTTTTTCGGGTTTTCGGGTTTCGGGTTTCGGGGTATT
1 TTTC-GGTTTCGG-GTTTCGGG-TTTCGGGTTTCGGGTTTC-GGG---T
*
4188950 TTTCAGGGGTTTCGGAGTTTTCGGAGTTGCAGGGTTTTCGGGTTTCGGG-
1 TTTC---GGTTTCGG-G-TTTCGG-GTTTC-GGG-TTTCGGGTTTCGGGT
*
4188999 -TTGGGTTTTCGGGTTTTTCGGG-TTCGGGTCTTTTCGGAGTTTCGGG-
1 TTTCGG-TTTCGGG--TTTCGGGTTTCGGG---TTTCGG-GTTTCGGGT
*
4189045 TTTCGGAGTTTCGAGGGGTTTCCGGGTATTCGGGTTAATACGGG-TCCGGG-
1 TTTC-G-GTTTC---GGGTTT-CGGGT-TTCGGGTT--T-CGGGTTTCGGGT
*
4189095 TTTCGGGATTTTAGGGTTTCGGGTGTTCGGGTGTTCGGG-TTCGGG-
1 TTTC-GG--TTTCGGGTTTCGGGT-TTCGGGT-TTCGGGTTTCGGGT
* * ** *
4189140 TTTCGGGTTC-GGTTTACGGTTTTCGGGTTTCGGGGGTCGGGA
1 TTTCGGTTTCGGGTTT-CGGGTTTCGGGTTTCGGGTTTCGGGT
*
4189182 TTTCGGTTTCGGGATTTCGGGTTTCGGGTTTCGGTTTTCGGG-
1 TTTCGGTTTCGGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGT
*
4189224 TTTCGGGTTT----TTTCGGGTTTCGGGTTTCGGGTTTCGTG-
1 TTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
* *
4189262 TTTCGGGTTTCGGGTTTTTCGAGTTTTCGGGGTTCGGGTTTCGGG-
1 TTTC-GGTTTCGGG--TTTCG-GGTTTCGGGTTTCGGGTTTCGGGT
4189307 TTTCGGTTTCGGGGTTTTTC-GGTTTCGGGTTTTCGGGTTTC-GG-
1 TTTCGGTTTC-GGG--TTTCGGGTTTCGGG-TTTCGGGTTTCGGGT
4189350 TTTCGGTTTCGGGTTTCGGGTTTCGGAGTTTGCGGGTTTACGGG-
1 TTTCGGTTTCGGGTTTCGGGTTTCGG-GTTT-CGGGTTT-CGGGT
*
4189394 TGT-GGTTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGG-
1 TTTCGG-TTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
**
4189435 TTTCGGAGTTTCGGGTTTTC-GGTAGCGGGATTTTCGGAGTTTCGGG-
1 TTTC-G-GTTTCGGG-TTTCGGGTTTCGGG--TTTCGG-GTTTCGGGT
* *
4189481 TTTCGGGTTGCGGGTTTTCGGGGTTCGGTGTTTC
1 TTTC-GGTTTCGGG-TTTCGGGTTTCGG-GTTTC
Statistics
Matches: 8744, Mismatches: 807, Indels: 2111
0.75 0.07 0.18
Matches are distributed among these distances:
36 16 0.00
37 18 0.00
38 88 0.01
39 163 0.02
40 443 0.05
41 609 0.07
42 1146 0.13
43 1154 0.13
44 1252 0.14
45 1101 0.13
46 919 0.11
47 682 0.08
48 442 0.05
49 292 0.03
50 167 0.02
51 131 0.01
52 55 0.01
53 43 0.00
54 17 0.00
55 6 0.00
ACGTcount: A:0.05, C:0.13, G:0.42, T:0.41
Consensus pattern (42 bp):
TTTCGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGT
Done.