genome.fa.s792.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold792
Parameters: 2 7 7 80 10 50 1000
Length:  24561

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9622--9732	1	111.0	1	76	0	96	87	9	1	1	0.69
9622--9732	39	2.9	37	79	11	127	87	9	1	1	0.69
9622--9732	46	2.5	44	84	11	145	87	9	1	1	0.69
11170--11607	88	5.0	87	82	7	476	30	28	17	23	1.97
11172--11607	30	14.9	29	78	9	379	30	28	17	23	1.97
11618--11707	43	2.1	43	91	0	144	27	23	17	31	1.97
11661--11814	52	2.9	53	79	4	175	25	23	16	35	1.95
12575--12599	13	1.9	13	100	0	50	36	16	16	32	1.90
12555--12621	33	2.0	33	88	0	98	32	11	14	40	1.83
12682--12862	52	3.5	52	98	0	344	34	19	17	28	1.95
15713--15782	28	2.5	28	80	0	86	25	30	15	28	1.96
15823--15891	28	2.5	28	82	0	84	23	34	17	24	1.96
15666--15938	107	2.6	107	78	4	302	28	25	12	32	1.93
15876--16043	51	3.3	51	81	3	176	29	27	12	30	1.93
16995--17199	112	1.8	110	83	5	268	31	17	17	34	1.92
17481--17553	20	3.6	20	72	15	60	21	19	10	47	1.79
19758--20842	81	13.4	80	76	6	745	19	23	15	41	1.89
19972--20077	41	2.6	40	72	8	106	21	20	13	44	1.86
19769--20842	161	6.7	160	78	6	825	20	22	15	41	1.89
19847--20833	242	4.1	243	79	6	957	20	22	14	41	1.89
19860--20649	405	2.0	405	83	3	1027	20	22	15	41	1.90
20433--20842	41	10.1	40	67	11	138	19	22	15	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20674--20805	40	3.3	40	75	12	117	18	15	16	49	1.80
20831--21035	90	2.3	91	86	4	290	20	24	19	36	1.95

Tables:   1

The End!