Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold794
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14380
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Found at i:2278 original size:475 final size:476
Alignment explanation
Indices: 70--2458 Score: 3682
Period size: 476 Copynumber: 5.0 Consensus size: 476
60 AGGGTTTAGG
*
70 TTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCAATATCGTT
1 TTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCAATATCATT
* * *
135 TATCCTAATAAGGATAGGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAATACTATAA
66 TATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAATACTAGAA
* *
200 TCCTTGTTTGGCACATTTTAGGCACGGAGATAGACTTTATAATAATTGGTCGAAAGAAAACCTCT
131 TCCTTGTTTGGCACATTTTAGGCACAGACATAGACTTTATAATAATTGGTCGAAAGAAAACCTCT
* *
265 CTTGAGAAACCAAAGCTTCATTATCATGCATCCCTAAGAGAAGACTACGTTTATGGTGCCTAATC
196 CTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGTGCCTAATC
* * *
330 CCGAAAGGAATGGGGATTAGTATGACGATTCATGTTTGTCTTTTTTAAGAGGCAAACTTTCATTC
261 CCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAACTTTCATTC
*
395 TATCAAAAACGGTGGAATGAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGTATCCTAA
326 TATCAAAAATGGTGGAATGAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGTATCCTAA
*** * * *
460 AGAAGGGAACAAGTTTTTGGGTCCCAATCTTGAAAAGAATAGAGAATGTTTCGAGAATCGATGCT
391 AGAAGGGAATGTGTTTTTGGGTCCAAATCTTGAAAAGAATGGAGATTGTTTCGAGAATCGATGCT
*
525 TGTCTTATTTAAGTGATA-AAA
456 TGTCTTATTTAAGTGA-AGAAC
* * * *
546 TTTGATTATATGGAAAATAAGGGTAAAGAAAAGATTTCCATG-AAA-AAAATCAGCAATATCATT
1 TTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCAATATCATT
* * ** * ** * ** * *
609 TA-CTGTAATGAGCATATTGTGTGTATAGTTCCTAATCACAAAACAAATGAAGAACAATACTAGA
66 TATC-CTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAATACTAGA
* * *
673 ATCCATGTTTGGCACATTTTAGGCACGGACATAGACTTTATAACAATTGGTCGAAAGAAAACCTC
130 ATCCTTGTTTGGCACATTTTAGGCACAGACATAGACTTTATAATAATTGGTCGAAAGAAAACCTC
738 TCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGTGCCTAAT
195 TCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGTGCCTAAT
*
803 CCCGAAAAGAATGGGGATTAGTATGACCATTCTTGTTTGTCTTATTTAAGAGGCAAACTTTCATT
260 CCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAACTTTCATT
* *
868 CTATCAAAAATGGTGGAATGAAAAGCTTTTCTTGGGACACCAAAGCGTCAATGTCGTGTATCCTA
325 CTATCAAAAATGGTGGAATGAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGTATCCTA
** * * * * * *
933 GTGAAGTGAATGTGTTTTTTGGGTCCCAATCTTGAAAAGAAAT-GAGAATGTTTCCAGAATTGGT
390 AAGAAGGGAATGTG-TTTTTGGGTCCAAATCTTGAAAAG-AATGGAGATTGTTTCGAGAATCGAT
* * ** *
997 GCTTGTCTGATTTAAGGGTTGAGC
453 GCTTGTCTTATTTAAGTGAAGAAC
* * * *
1021 TTTGATTTTAAGGAAAATAAGGCCAAAGAAAAGATTTCTATGAAATGAAAATCATCAATATCGTT
1 TTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCAATATCATT
1086 TATCCTAATGAGGATAAGGTGTTTTATAGGGCCTATTCACAAAATGATTGAAGATCAATACTAGA
66 TATCCTAATGAGGATAAGGTG-TTTATAGGGCCTATTCACAAAATGATTGAAGATCAATACTAGA
* *
1151 ATCCTTGTTTGGCACA-TTTAGGCAC-GAACATAGACTTTATAATAATTAGTCGACAGAAAAACC
130 ATCCTTGTTTGGCACATTTTAGGCACAG-ACATAGACTTTATAATAATTGGTCGAAAG-AAAACC
*
1214 TCTGTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGTGCCTA
193 TCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGTGCCTA
*
1279 ATCCC-AGAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTTTTTAAGAGGCAAAACTTT
258 ATCCCGA-AAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGC-AAACTTT
* * * * *
1343 CATTCTATTAAAAACGGTGGAAT-AAAAGCTTTTTTTGTGACACTAAAGCGTCAATGTCGTGTAT
321 CATTCTATCAAAAATGGTGGAATGAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGTAT
* *
1407 CCTAAAGAAGGGAATGTGTTTTTGGGTCCAAATCATGAAAAGAATGGAGATTGTTACGAGAATCG
386 CCTAAAGAAGGGAATGTGTTTTTGGGTCCAAATCTTGAAAAGAATGGAGATTGTTTCGAGAATCG
*
1472 ATGCTTGTCTTATTTAAGAGAAGAAC
451 ATGCTTGTCTTATTTAAGTGAAGAAC
** *
1498 TTTGGCTTTAAGGAAAACAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCAATATCATT
1 TTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCAATATCATT
1563 TATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAATACTAGAA
66 TATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAATACTAGAA
*
1628 TCCTTGTTTGGCACATTTTAGGCACAGACATAGACTTTATAATAATTGGTCGAAAGAAAACCTTT
131 TCCTTGTTTGGCACATTTTAGGCACAGACATAGACTTTATAATAATTGGTCGAAAGAAAACCTCT
* *
1693 CTTGAGAAACCAAAGCTTCATTATCTTGCATCCTTATGAGAAGGCTACGTTTATGGTGCCTAATC
196 CTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGTGCCTAATC
*
1758 CCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAGCTTTCATTC
261 CCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAACTTTCATTC
* *
1823 TATCAAAAATGGTGGAATAAAAAGCTTTTCTTTTGACACCAAAGCTTCAATGTCGTGTATCCTAA
326 TATCAAAAATGGTGGAATGAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGTATCCTAA
* *
1888 TGAAGGGAATGTGTTTTTGGGTCCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCT
391 AGAAGGGAATGTGTTTTTGGGTCCAAATCTTGAAAAGAATGGAGATTGTTTCGAGAATCGATGCT
1953 TGTCTTATTTAAGTGAAGAAC
456 TGTCTTATTTAAGTGAAGAAC
*
1974 TTTAATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCAATATCATT
1 TTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCAATATCATT
* * * * ** * *
2039 TATCCTAATAAGGATAACGTGTTTATAAGGCCCATTCACAAGGTGAGTGAAGATCAATACTAGAT
66 TATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAATACTAGAA
* * * *
2104 TCCTTGTTTGGCACA-TTTAGGCACAGACATAGACTATATAATAATAGGTCGAAAGAAAAGCTTT
131 TCCTTGTTTGGCACATTTTAGGCACAGACATAGACTTTATAATAATTGGTCGAAAGAAAACCTCT
* * *
2168 CTTGAGAAACCAAAGCTTCCTTATCATGCATCCTTATGAGAAGACTATGTTTATGGTGGCTAATC
196 CTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGTGCCTAATC
*
2233 CCGAAAAGAATGGGGATTAGTGTGACCATTCATGTTTGTCTTATTTAAGAGGCAAACTTTCATTC
261 CCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAACTTTCATTC
*
2298 TATCAAAAATGATGGAATGAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGTATCCTAA
326 TATCAAAAATGGTGGAATGAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGTATCCTAA
* *
2363 CGAAGGGAATGTGTTTTTGGGTCCAAATCTTGGAAAGAATGGAGATTGTTTCGAGAATCGATGCT
391 AGAAGGGAATGTGTTTTTGGGTCCAAATCTTGAAAAGAATGGAGATTGTTTCGAGAATCGATGCT
* * *
2428 GGACTTATTTAAGTGAGGAAC
456 TGTCTTATTTAAGTGAAGAAC
*
2449 TTTCATTTTA
1 TTTGATTTTA
2459 TGGCACATTT
Statistics
Matches: 1747, Mismatches: 149, Indels: 35
0.90 0.08 0.02
Matches are distributed among these distances:
473 1 0.00
474 320 0.18
475 446 0.26
476 485 0.28
477 240 0.14
478 227 0.13
479 28 0.02
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (476 bp):
TTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCAATATCATT
TATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAATACTAGAA
TCCTTGTTTGGCACATTTTAGGCACAGACATAGACTTTATAATAATTGGTCGAAAGAAAACCTCT
CTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGTGCCTAATC
CCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAACTTTCATTC
TATCAAAAATGGTGGAATGAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGTATCCTAA
AGAAGGGAATGTGTTTTTGGGTCCAAATCTTGAAAAGAATGGAGATTGTTTCGAGAATCGATGCT
TGTCTTATTTAAGTGAAGAAC
Found at i:2904 original size:641 final size:643
Alignment explanation
Indices: 1836--3055 Score: 1869
Period size: 641 Copynumber: 1.9 Consensus size: 643
1826 CAAAAATGGT
*
1836 GGAATAAAAAGCTTTTCTTTTGACACCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTG
1 GGAATAAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* *
1901 TTTTTGGGTCCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
66 TTTTTGGGTCCAAATCTTGAAAAGAATAGAGAATGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * * * * *
1966 TGAAGAACTTTAATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
131 GGAAGAAATTTAATTATAAGGAAAATAAGGGCAAAGAAAAGATTTACACGAAAAGAAAATCAGCA
* * ** * *
2031 ATATCATTTATCCTAATAAGGATAACGTGTTTATAAGGCCCATTCACAAGGTGAGTGAAGATCAA
196 ATATCATTTATCCTAATAAGCATAACGTGTTTATAAGGCCCAATCACAA-GCAAATGAAGAACAA
* *
2096 TACTAGATTCCTTGTTTGGCACATTTAGGCACAGACATAGACTATATAATAATAGGTCGAAAGAA
260 TACTAGAATCCATGTTTGGCACATTTAGGCACAGACATAGACTATATAATAATAGGTCGAAAGAA
* * * *
2161 AAGCTTTCTTGAGAAACCAAAGCTTCCTTATCATGCATCCTTATGAGAAGACTATGTTTATGGTG
325 AACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGTG
*
2226 GCTAATCCCGAAAAGAATGGGGATTAGTGTGACCATTCATGTTTGTCTTATTTAAGAGGCAAACT
390 CCTAATCCCGAAAAGAATGGGGATTAGTGTGACCATTCATGTTTGTCTTATTTAAGAGGCAAACT
* * * *
2291 TTCATTCTATCAAAAATGATGGAATGAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGT
455 TTCATTCTATCAAAAACGATGGAATGAAAAGCTTTTCATGGGACACCAAAGCGTCAATGTCGTGT
* *
2356 ATCCTAACGAAGGGAATGTGTTTTTGGGTCCAAATCTTGGAAAG-AATGGAGATTGTTTCGAGAA
520 ATCCTAACAAAGGGAATGTGTTTTTGGGTCCAAATCTTGGAAAGAAAT-GAGAATGTTTCGAGAA
2420 TCGATGCTGGACTTATTTAAGTGAGGAACTTTCATTTTATGGCACATTTTAGGCACGAAG
584 TCGATGCTGGACTTATTTAAGTGAGGAACTTTCATTTTATGGCACATTTTAGGCACGAAG
* * *
2480 GGAATGAAATGCTTTTCTTGTGACACCAAGGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTG
1 GGAATAAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* *
2545 TTTTTGGGTCC-CA-CTTGAAAAGAATAGAGAATGTTTCGAGAATCGATGCTTGTCTTATTTAAG
66 TTTTTGGGTCCAAATCTTGAAAAGAATAGAGAATGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * *
2608 GGATA-AAATTTGATTATAAGGAAAATAAGGGTAAAGAAAAGATTTAGACGAAAAGAAAATCAGC
131 GGA-AGAAATTTAATTATAAGGAAAATAAGGGCAAAGAAAAGATTTACACGAAAAGAAAATCAGC
* * ** * *
2672 AATATCATTTA-CTGTAATGAGCATATTGTGTTTAT-AGTTCCTAATCACAA-CAAATGAAGAAC
195 AATATCATTTATC-CTAATAAGCATAACGTGTTTATAAG-GCCCAATCACAAGCAAATGAAGAAC
** * * *
2734 AATACTAGAATCCATGTTTGGCACATTTTAGGCATGGACATAGACTTTATAATAATTGGTCGACA
258 AATACTAGAATCCATGTTTGGCACA-TTTAGGCACAGACATAGACTATATAATAATAGGTCGAAA
2799 GAAAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATG
322 GAAAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATG
*
2864 GTGCCTAATCCCGAAAAGAATGGGGATTAGTGTGACCATTCATGTTTGTCTTATTTAAGAGGTAA
387 GTGCCTAATCCCGAAAAGAATGGGGATTAGTGTGACCATTCATGTTTGTCTTATTTAAGAGGCAA
*
2929 ACTTTCATTCTATCAAAAACGGTGGAATGAAAAGCTTTTCATGGGACACCAAAGCGTCAATGTCG
452 ACTTTCATTCTATCAAAAACGATGGAATGAAAAGCTTTTCATGGGACACCAAAGCGTCAATGTCG
* * *
2994 TGTATCCTAATAAAGGGAATGTGTTTTTGGGTCCCAATCTTGTAAAGAAATGAGAATGTTTC
517 TGTATCCTAACAAAGGGAATGTGTTTTTGGGTCCAAATCTTGGAAAGAAATGAGAATGTTTC
3056 AAAAACTGAT
Statistics
Matches: 519, Mismatches: 52, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
640 31 0.06
641 274 0.53
642 140 0.27
643 2 0.00
644 72 0.14
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (643 bp):
GGAATAAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTG
TTTTTGGGTCCAAATCTTGAAAAGAATAGAGAATGTTACGAGAATCGATGCTTGTCTTATTTAAG
GGAAGAAATTTAATTATAAGGAAAATAAGGGCAAAGAAAAGATTTACACGAAAAGAAAATCAGCA
ATATCATTTATCCTAATAAGCATAACGTGTTTATAAGGCCCAATCACAAGCAAATGAAGAACAAT
ACTAGAATCCATGTTTGGCACATTTAGGCACAGACATAGACTATATAATAATAGGTCGAAAGAAA
ACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGTGC
CTAATCCCGAAAAGAATGGGGATTAGTGTGACCATTCATGTTTGTCTTATTTAAGAGGCAAACTT
TCATTCTATCAAAAACGATGGAATGAAAAGCTTTTCATGGGACACCAAAGCGTCAATGTCGTGTA
TCCTAACAAAGGGAATGTGTTTTTGGGTCCAAATCTTGGAAAGAAATGAGAATGTTTCGAGAATC
GATGCTGGACTTATTTAAGTGAGGAACTTTCATTTTATGGCACATTTTAGGCACGAAG
Found at i:3368 original size:476 final size:476
Alignment explanation
Indices: 2480--9005 Score: 9791
Period size: 476 Copynumber: 13.8 Consensus size: 476
2470 AGGCACGAAG
* * *
2480 GGAATGAAATGCTTTTCTTGTGACACCAAGGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* * *
2545 TTTTTGGGTCCC-A-CTTGAAAAGAATAGAGAATGTTTCGAGAATCGATGCTTGTCTTATTTAAG
66 TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * * * * ** * *
2608 GGATAAAATTTGATTATAAGGAAAATAAGGGTAAAGAAAAGATTTAGACGAAAAGAAAATCAGCA
131 TGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
* * ** ** * *
2673 ATATCATTTA-CTGTAATGAGCATATTGTGTTTATAGTTCCTAATCACAACAA--A-TGAAGAAC
196 ATATCATTTATC-CTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAA-AATGATTGAAGATC
* * *
2734 AATACTAGAATCCATGTTTGGCACATTTTAGGCATGGACATAGACTTTATAATAATTGGTCGACA
259 AATACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAA
2799 GAAAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATG
324 GAAAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATG
* *
2864 GTGCCTAATCCCGAAAAGAATGGGGATTAGTGTGACCATTCATGTTTGTCTTATTTAAGAGGTAA
389 GTGCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAA
2929 ACTTTCATTCTATCAAAAACGGT
454 ACTTTCATTCTATCAAAAACGGT
* * *
2952 GGAATGAAAAGCTTTTCATGGGACACCAAAGCGTCAATGTCGTGTATCCTAATAAAGGGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* * * * * *
3017 TTTTTGGGTCCCAATCTTGTAAAGAAAT-GAGAATGTTTC-AAAAACTGATGCTTGTCTGATTTA
66 TTTTTGGGTCCCAATCTTGAAAAG-AATGGAGATTGTTACGAGAATC-GATGCTTGTCTTATTTA
* * **
3080 AGGGTTGAGGTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCAT
129 AGTGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCAT
* * *
3145 CAATATCGTTTATCCTAATAAGGATAGGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATC
194 CAATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATC
* *
3210 AATACTATAATCCTTGTTTGGCACATTTTAGGCACGGAGATAGACTTTATAATAATTGGTCGAAA
259 AATACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAA
* * *
3275 GAAATCCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCCTAAGAGAAGACTACGTTTATG
324 GAAAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATG
* * *
3340 GTGCCTAATCCCGAAAGGAATGGGGATTAGTATGACGATTCATGTTTGTCTTTTTTAAGAGGCAA
389 GTGCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAA
*
3405 ACTTTCATTCTGTCAAAAACGGT
454 ACTTTCATTCTATCAAAAACGGT
* * * *
3428 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAACGAG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* * *
3493 TTTTTGGGTCCCAATCTTGAAAAGAATAGAGAATGTTTCGAGAATCGATGCTTGTCTTATTTAAG
66 TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * * * * * *
3558 TGAT-AAATTTGATTATATGGAAAATAAGGGTAAAG-AAATATTTCCAAGAAAAGAAAATCAGCA
131 TGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
* * ** * ** * ** * *
3621 ATATCATTTA-CTGTAATGAGCATATTGTGTGTATAGTTCCTAATCACAAAACAAATGAAGAACA
196 ATATCATTTATC-CTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCA
* ** *
3685 ATACTAGAATCCATGTTTGGCACATTTTAGGCACATACATAGACTTTATAATAATTGGTCAAAAG
260 ATACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAAG
*
3750 AAAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTATGTTTATGG
325 AAAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGG
*
3815 TGCCTAATCCCCAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAA
390 TGCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAA
*
3880 CTTTCATTCTATCAAAAATGGT
455 CTTTCATTCTATCAAAAACGGT
* * *
3902 GGAATGAAAAGCTTTTCTTGGGACACCAAAGCGTCAATGTCGTGTATGCTAATGAAGTGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* * * * *
3967 TTTTTGGGTCCCAATCTTGAAAAGAAAT-GAGAATGTTTCCAGAATTGATGCTTGTCTGATTTAA
66 TTTTTGGGTCCCAATCTTGAAAAG-AATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAA
* * * * *
4031 GGGTTGAGCTTTGATTTTAAGGAAAATAAGGCCAAAGAAAAGATTTCCATGAAATGAAAATCATC
130 GTGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATC
*
4096 AATATCGTTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCA
195 AATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCA
*
4161 ATACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGACAG
260 ATACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAAG
*
4226 AAAACCTCTGTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGG
325 AAAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGG
*
4291 TGCCTAATCCC-AGAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTTTTTAAGAGGCAA
390 TGCCTAATCCCGA-AAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAA
*
4355 ACTTTCATTCTATTAAAAACGGT
454 ACTTTCATTCTATCAAAAACGGT
* *
4378 GGAAT-AAAAGCTTTTTTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAAAGAAGGGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* *
4442 TTTTTTGGGTCCAAATCATGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAA
66 -TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAA
* * * *
4507 GAGAAGAACTTTGACTTTAAGGAAAAAAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATC
130 GTGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATC
4572 AATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCA
195 AATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCA
* *
4637 ATACTAGAATCCTTGTTTGGCACATTTTAGGCACAGACATAGACTTTATAATAATTGGTCGACAG
260 ATACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAAG
* * *
4702 AAAACCTTTCTTGAGAAACCAAAGCTTCATTATCTTGCATCCTTATGAGAAGGCTACGTTTATGG
325 AAAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGG
4767 TGCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAA
390 TGCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAA
4832 CTTTCATTCTATCAAAAACGGT
455 CTTTCATTCTATCAAAAACGGT
* * *
4854 GGAATAAAAAGCTTTTCTTTTGACACCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
*
4919 TTTTTGGGTCCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
66 TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
*
4984 TGAAGAAC-TTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
131 TGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
5048 ATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAA
196 ATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAA
** *
5113 TACTAGAATCCTTGTTTGGCACATTTTAGGCAAAGACATAGACTTTATAATAATTGGTTGAAAGA
261 TACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAAGA
* * * *
5178 AAACTTTTCTTGAGAAACCAAAGCTTCATTATCTTGCATCCTTATGAGAAGGCTACGTTTATGGT
326 AAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGT
5243 GCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAAC
391 GCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAAC
5308 TTTCATTCTATCAAAAACGGT
456 TTTCATTCTATCAAAAACGGT
* * *
5329 GGAATAAAAAGCTTTTCTTTTGACACCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
*
5394 TTTTTGGGTCCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
66 TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
*
5459 TGAAGAAC-TTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
131 TGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
5523 ATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAA
196 ATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAA
* * *
5588 TACTAGAATCCTTGTTTGGCACATTTTAGGCGCGGACATAGACTTTAGAATAATTGGTCGACAGA
261 TACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAAGA
*
5653 AAACCTCTCTTGAGAAACCAAAGCTTCATTATCTTGCATCCTTATGAGAAGACTACGTTTATGGT
326 AAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGT
* * *
5718 GCCTAATCCCGGAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTTTTTAAAAGGCAAAC
391 GCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAAC
*
5783 TTTCATTCTAT-TAAAACGGT
456 TTTCATTCTATCAAAAACGGT
*
5803 GGAATGAAAAGCTTTTCTTGGGACACCAAAGCGTCAATGTCGTGTATCC----------AATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* * *
5858 TTTTTGGGTCCCAATCTTGAAAAGAAAT-GAGAATGTTTCGAGAATTGATGCTTGT-TTGATTTA
66 TTTTTGGGTCCCAATCTTGAAAAG-AATGGAGATTGTTACGAGAATCGATGCTTGTCTT-ATTTA
* * * **
5921 AGGGTTGAGCTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAATTAAAATCAT
129 AGTGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCAT
* *
5986 CAATATCGTTTATCCTAACGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATC
194 CAATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATC
*
6051 AATACTAGAATCCTTGTTTGGCACATTTTAGGCACAGACATAGACTTTATAATAATTGGTCGAAA
259 AATACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAA
* *** * *
6116 GAAAACCTTTCCAAAGAAACCAAAGCTTCATTATCTTGCATCCTTATGAGAAGGCTACGTTTATG
324 GAAAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATG
*
6181 GTGCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTGAGAGGCAA
389 GTGCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAA
6246 ACTTTCATTCTATCAAAAACGGT
454 ACTTTCATTCTATCAAAAACGGT
* * * *
6269 GGAATAAAAAGCTTTTCTTTTGACACCAAAGCTTCAATGTCGTGTATCCTAAAGAAGGGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* *
6334 TTTTTGGGTCCAAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
66 TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
*
6399 TGAAGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
131 TGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
6464 ATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAA
196 ATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAA
* *
6529 TACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTAGAATAATTGGTCGACAGA
261 TACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAAGA
6594 AAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGT
326 AAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGT
* *
6659 GCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTTTTTAAGAGGGAAAC
391 GCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAAC
*
6724 TTTCATTCTATTAAAAACGGT
456 TTTCATTCTATCAAAAACGGT
* * * *
6745 GGAATGAAAAGCTTTTTTTGTCACACCAAAGCGTCAATGTCGTGTACCCTAAAGAAGGGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* *
6810 TTTTTGGGTCCAAATCATGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
66 TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* *
6875 TGAAGAACTTTGACTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
131 TGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
* * * *
6940 ATATCATTCATCCTAATGAGGAGAAGGTATATATAGGGCCTATTCACAAAATGATTGAAGATCAA
196 ATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAA
* * *
7005 TCCTAGAATCCATGTTTGGCACATTTTAGGCATGGACATAGACTTTATAATAATTGGTCGAAAGA
261 TACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAAGA
* *
7070 AAACCTTTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGGCTACGTTTATGGT
326 AAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGT
7135 GCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAAC
391 GCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAAC
*
7200 TTTCATTCTATCAAAAACGGG
456 TTTCATTCTATCAAAAACGGT
* * *
7221 GGAATAAAAAGCTTTTCTTTTGACACCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* *
7286 TTTTTGGGTCCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATTGATGCTTG-CTTTATTTAA
66 TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTC-TTATTTAA
* *
7350 GTGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCGATGAAAAAAAAATCATC
130 GTGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATC
* * ** * * * * *
7415 AATATCATTTATCATAATAAGGATAATATGCTTATAGTGCCCTA-TCACAAAACT-AATGATGAA
195 AATATCATTTATCCTAATGAGGATAAGGTGTTTATAG-GGCCTATTCACAAAA-TGATTGAAGAT
** ** * * *
7478 CAATACTAGAATCCTTGTTTGGCTTATTTTAGGCACGGACCGAGACTTTGTAACAGTTGGTCGGA
258 CAATACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTC-GA
* * * * * *
7543 AA-AAAGCCGT-TCTTGAGAAACCAAAGCTTCATTATCGTGTATCCTTTTAAGAAGACCACGTTT
322 AAGAAAACC-TCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTT
** * *
7606 ATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACCTTTCATGTTTGTCTTATTTAAGAGC
386 ATGGTGCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGG
* *
7671 CAAACTTTGATTCTATCAAAAACGAT
451 CAAACTTTCATTCTATCAAAAACGGT
* * * *
7697 GGAATGAAAAGCTTTTCCTGTGGCACCAAAGCATCAATGTCGTGTATCCTAATTAAGGGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* **
7762 TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATTGATGCTTGTCAGATTTAAG
66 TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * *
7827 GGTTGAGCTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
131 TGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
* *
7892 ATATCATTTATCCTAATGAGGATAACGTGTTTATAGGGCCTATTCACAAAATGAATGAAGATCAA
196 ATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAA
** * * * *
7957 TACCGGAATCCTCGTTTGGCAAATTTTGGGCACAGACATAGACTTTATAATAATTGGTCGAAAGA
261 TACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAAGA
* *
8022 AAACCTTTCTTGAGAAACCAAAGCTTCATTATTATGCATCCTTATGAGAAGACTACGTTTATGGT
326 AAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGT
*
8087 GCCTAATCCCGGAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAAC
391 GCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAAC
* *
8152 TTTCATTCTATCAAAGATGGT
456 TTTCATTCTATCAAAAACGGT
* * *
8173 GGTATGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATATCGTGTATCCTAATGAAGGGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
** *
8238 TTTTTGGGTCCCAATCTTGAAAAGAAAT-GAGGA-TGTTTTGAGAATCGATGCTTATCTTATTTA
66 TTTTTGGGTCCCAATCTTGAAAAG-AATGGA-GATTGTTACGAGAATCGATGCTTGTCTTATTTA
* * * * * * *
8301 AGGGATAAACTTTGATTATAAGAAAAAGAAGGGTAAAGAAAAGATTTCCATGAAAAGAAAATCAG
129 AGTGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCAT
* * ** * * ** ** *
8366 CAATATCATTTA-CTATAATGAGCATATTGTGTTTATAGTGCCTAATCACAAAACAAACGAAGAA
194 CAATATCATTTATC-CTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGAT
* * *
8430 CAATACTCGAATCCATGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAG
258 CAATACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAA
* * *
8495 AGAAAATCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATTAGAAGACTACATTTAT
323 AGAAAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTAT
* * *
8560 GGTTCCTAATCCTGAAAAGAATGGGCATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCA
388 GGTGCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCA
* *
8625 AACTTTCATGCTATCAAAAATGGT
453 AACTTTCATTCTATCAAAAACGGT
* * *
8649 GGAATGAAAAGTTTTTCTTGTGACACCTAAGCATCAATGTCGTGTATCCTAATGAAGGGAATGTG
1 GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
* * ** *
8714 TTTTTGGGTCCCAATCTTGAAAAGAATGGGGATTGTGATAAGAATTGATGCTTGTCTTATTTAAG
66 TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
8779 TGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
131 TGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
* * * * * * * * * *
8844 ATATCATTTATCATAATAAGGATAATGTGTTTATAGTGCCCAATCAGAAAACT-AATGATGAGCA
196 ATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAA-TGATTGAAGATCA
* *** * * * *
8908 ATACTAGAGTCCTTGTTTGGCTTTTTTTAGGCACGGACCTAGACTTTGTAATAATTAGTCGGAAG
260 ATACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAAG
* *
8973 AAAGCCAT-TCTTTAGAAACCAAAGCTTCATTAT
325 AAAACC-TCTCTTGAGAAACCAAAGCTTCATTAT
9006 TGATAAAAAC
Statistics
Matches: 5531, Mismatches: 469, Indels: 104
0.91 0.08 0.02
Matches are distributed among these distances:
463 2 0.00
464 64 0.01
465 313 0.06
466 53 0.01
472 71 0.01
473 8 0.00
474 575 0.10
475 925 0.17
476 3438 0.62
477 82 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (476 bp):
GGAATGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAATGAAGGGAATGTG
TTTTTGGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
TGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAGAAAATCATCA
ATATCATTTATCCTAATGAGGATAAGGTGTTTATAGGGCCTATTCACAAAATGATTGAAGATCAA
TACTAGAATCCTTGTTTGGCACATTTTAGGCACGGACATAGACTTTATAATAATTGGTCGAAAGA
AAACCTCTCTTGAGAAACCAAAGCTTCATTATCATGCATCCTTATGAGAAGACTACGTTTATGGT
GCCTAATCCCGAAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGGCAAAC
TTTCATTCTATCAAAAACGGT
Found at i:5498 original size:159 final size:160
Alignment explanation
Indices: 4383--5498 Score: 399
Period size: 158 Copynumber: 7.0 Consensus size: 160
4373 ACGGTGGAAT
* * * *
4383 AAAAGCTTTT-TTTGTGACACCAAAGCGTCAATGTCGTGTATCCTAAAGAAGGGAATGTGTTTTT
1 AAAAGCTTTTCTTT-TGAAACCAAAGCTTCAATATCGTGTATCCTAATGAAGGGAATGTG-TTTT
* *
4447 TGGGTCCAAATCATGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGAGAA
64 TGGGTCCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGTGAA
* * *
4512 GAACTTTGACTTTAAGGAAAAAAAGG-GCAAAG
129 -AACATTGATTTTAAGGAAAATAAGGTGCAAAG
* ** ** * * * * * *
4544 AAAAG-ATTTC-CATGAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGATAAGGTGTTTA
1 AAAAGCTTTTCTTTTG-AAACCAAAGCTTCAATATCGTGTATCCTAATGAAGG-GAATGTGTTT-
* * * ** * * *** * ** * * ** *
4606 TAGGG-CCTATTC-ACAAAATGATTGAAGATCAATACTAGAATCCTTGTTTGGCACATTTTAG-G
63 TTGGGTCCAAATCTTGAAAA-GAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGTG
* * * * * *
4668 CACAGACATAGACTTTATA--ATAAT-TGGT-CGACAG
127 -A-AAACATTGATTTTA-AGGAAAATAAGGTGC-AAAG
* ** * * * * * * ** *
4702 AAAA-CCTTTCTTGAGAAACCAAAGCTTCATTATCTTGCATCCTTATGAGAAGG-CTACGTTTAT
1 AAAAGCTTTTCTTTTGAAACCAAAGCTTCAATATCGTGTATCCTAATGA-AGGGAATGTGTTTTT
* ** * * * * * *
4765 -GGTGCCTAATCCCGAAAAGAATGGGGATTAG-TATGACCATTC-ATGTTTGTCTTATTTAAGAG
65 GGGT-CCAAATCTTGAAAAGAATGGAGATT-GTTACGA-GAATCGATGCTTGTCTTATTTAAG-T
* * * * ** * *
4827 GCAAACTTTCATTCT-ATCAAAA-ACGGTGGAATA-
126 GAAAACATTGATTTTAAGGAAAATAAGGTGCAA-AG
* *
4860 AAAAGCTTTTCTTTTGACACCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTGTTTTTG
1 AAAAGCTTTTCTTTTGAAACCAAAGCTTCAATATCGTGTATCCTAATGAAGGGAATGTGTTTTTG
4925 GGTCCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGTGAAGA
66 GGTCCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGTGAA-A
4990 AC-TTGATTTTAAGGAAAATAAGG-GCAAAG
130 ACATTGATTTTAAGGAAAATAAGGTGCAAAG
* ** ** * * * * * *
5019 AAAAG-ATTTC-CATGAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGATAAGGTGTTTA
1 AAAAGCTTTTCTTTTG-AAACCAAAGCTTCAATATCGTGTATCCTAATGAAGG-GAATGTGTTT-
* * * ** * * *** * ** * * ** *
5081 TAGGG-CCTATTC-ACAAAATGATTGAAGATCAATACTAGAATCCTTGTTTGGCACATTTTAG-G
63 TTGGGTCCAAATCTTGAAAA-GAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGTG
* * * *
5143 CAAAGACATAGACTTTATA--ATAAT-TGGTTG-AAAG
127 -AAA-ACATTGATTTTA-AGGAAAATAAGG-TGCAAAG
** * * * * * * ** *
5177 AAAA-CTTTTCTTGAGAAACCAAAGCTTCATTATCTTGCATCCTTATGAGAAGG-CTACGTTTAT
1 AAAAGCTTTTCTTTTGAAACCAAAGCTTCAATATCGTGTATCCTAATGA-AGGGAATGTGTTTTT
* ** * * * * * *
5240 -GGTGCCTAATCCCGAAAAGAATGGGGATTAG-TATGACCATTC-ATGTTTGTCTTATTTAAGAG
65 GGGT-CCAAATCTTGAAAAGAATGGAGATT-GTTACGA-GAATCGATGCTTGTCTTATTTAAG-T
* * * * ** * *
5302 GCAAACTTTCATTCT-ATCAAAA-ACGGTGGAATA-
126 GAAAACATTGATTTTAAGGAAAATAAGGTGCAA-AG
* *
5335 AAAAGCTTTTCTTTTGACACCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTGTTTTTG
1 AAAAGCTTTTCTTTTGAAACCAAAGCTTCAATATCGTGTATCCTAATGAAGGGAATGTGTTTTTG
5400 GGTCCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGTGAAGA
66 GGTCCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGTGAA-A
5465 AC-TTGATTTTAAGGAAAATAAGG-GCAAAG
130 ACATTGATTTTAAGGAAAATAAGGTGCAAAG
5494 AAAAG
1 AAAAG
5499 ATTTCCATGA
Statistics
Matches: 657, Mismatches: 228, Indels: 142
0.64 0.22 0.14
Matches are distributed among these distances:
156 6 0.01
157 18 0.03
158 288 0.44
159 284 0.43
160 56 0.09
161 5 0.01
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (160 bp):
AAAAGCTTTTCTTTTGAAACCAAAGCTTCAATATCGTGTATCCTAATGAAGGGAATGTGTTTTTG
GGTCCAAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGTGAAAA
CATTGATTTTAAGGAAAATAAGGTGCAAAG
Found at i:10636 original size:12 final size:11
Alignment explanation
Indices: 10617--10688 Score: 62
Period size: 12 Copynumber: 6.5 Consensus size: 11
10607 AGAGAAAGAA
10617 GAGATAGGAGG
1 GAGATAGGAGG
10628 GATGATAGGAGG
1 GA-GATAGGAGG
*
10640 AGAGATA--AGA
1 -GAGATAGGAGG
*
10650 GAGATAGTA--
1 GAGATAGGAGG
10659 GAGATAGGAGG
1 GAGATAGGAGG
10670 GATGATAGGAGG
1 GA-GATAGGAGG
10682 AGAGATA
1 -GAGATA
10689 AGAGAGATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
9 14 0.27
10 2 0.04
11 5 0.10
12 26 0.51
13 4 0.08
ACGTcount: A:0.42, C:0.00, G:0.44, T:0.14
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:10663 original size:42 final size:42
Alignment explanation
Indices: 10607--10725 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
10597 TAGCCCTTAA
* *
10607 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
10649 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
* * *
10691 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAG
10726 GAGAAAAAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.45, C:0.01, G:0.44, T:0.11
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
Found at i:10746 original size:42 final size:41
Alignment explanation
Indices: 10606--10749 Score: 166
Period size: 42 Copynumber: 3.5 Consensus size: 41
10596 GTAGCCCTTA
* *
10606 AAGAGA-AAGAAGAGATAGGAGGGATGATAGGAGGAGAGAT
1 AAGAGAGATGAAGAGAGAGGAGGGATGATAGGAGGAGAGAT
* *
10646 AAGAGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGAT
1 AAGAGAGAT-GAAGAGAGAGGAGGGATGATAGGAGGAGAGAT
* *
10688 AAGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGGAGA-
1 AAGAGAGATGA-AGAGAGAGGAGGGATGATAGGAGGA-GAGAT
* *
10730 AAAAAAGATGGAAGAGAGAG
1 AAGAGAGAT-GAAGAGAGAG
10750 AAAATGAGAG
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
40 6 0.07
41 1 0.01
42 78 0.87
43 5 0.06
ACGTcount: A:0.47, C:0.01, G:0.42, T:0.10
Consensus pattern (41 bp):
AAGAGAGATGAAGAGAGAGGAGGGATGATAGGAGGAGAGAT
Done.