Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold796
Parameters: 2 7 7 80 10 50 1000
Length:  61010

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3353--3377
11
2.3
11
100
0
50
0
8
0
92
0.40
4749--4852
40
2.6
41
83
7
124
45
0
1
52
1.11
4840--4891
14
3.6
14
77
12
52
34
0
0
65
0.93
6065--6106
18
2.3
19
87
4
59
45
0
7
47
1.30
6388--6417
3
10.0
3
100
0
60
66
0
0
33
0.92
6630--6673
16
2.8
16
85
0
52
50
0
0
50
1.00
9260--9305
7
6.3
7
82
9
56
39
0
0
60
0.97
9264--9316
14
3.6
15
78
16
58
39
0
0
60
0.97
10984--11037
16
3.4
16
82
10
74
33
0
3
62
1.12
12593--12629
18
2.1
18
100
0
74
27
5
0
67
1.12
15575--15685
36
3.1
35
82
6
134
49
9
6
35
1.60
17748--17836
16
5.7
15
74
9
72
34
4
6
53
1.47
17753--17836
31
2.7
31
79
5
89
33
4
7
54
1.49
18278--18327
7
6.9
7
77
8
55
32
0
2
66
1.03
18269--18316
23
2.1
23
100
0
96
39
0
0
60
0.97
18822--18928
56
1.9
56
92
0
178
44
2
13
39
1.58
22052--22082
16
2.0
15
93
6
53
19
0
3
77
0.90
23444--23497
5
10.8
5
89
0
72
51
7
20
20
1.70
23444--23497
10
5.4
10
90
0
81
51
7
20
20
1.70
23436--23497
15
4.2
15
89
2
90
51
8
20
19
1.72
23547--23581
15
2.3
16
90
9
56
62
5
14
17
1.49
26291--26354
21
3.1
21
62
8
51
32
6
10
50
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31903--31947
18
2.5
18
96
0
81
53
0
0
46
1.00
32511--32547
19
1.9
20
94
5
67
29
13
0
56
1.37
33328--33465
68
2.0
68
94
0
240
39
15
24
19
1.91
33525--33560
18
2.0
18
89
10
56
19
13
0
66
1.24
34331--34375
16
2.8
16
83
9
56
40
4
2
53
1.33
37018--37042
12
2.1
12
100
0
50
0
8
0
92
0.40
38422--38454
15
2.2
15
89
10
50
54
3
0
42
1.15
38405--38449
22
2.1
22
84
12
58
55
2
2
40
1.24
38459--38508
25
2.0
23
85
11
64
48
0
0
52
1.00
38548--38609
14
4.4
14
78
8
54
32
1
1
64
1.13
38560--38609
14
3.5
14
75
5
55
32
2
2
64
1.16
38838--38867
13
2.3
13
94
0
51
33
3
6
56
1.42
39651--39688
18
2.1
18
85
9
51
15
13
0
71
1.16
39572--39748
79
2.3
78
96
2
327
16
12
4
65
1.42
39938--39982
18
2.5
18
85
0
54
42
4
8
44
1.56
40333--40370
17
2.2
18
85
4
51
68
0
5
26
1.11
40451--40516
16
4.1
16
79
11
55
36
3
4
56
1.35
40458--40527
16
4.4
16
82
7
52
38
4
4
52
1.41
44575--44620
14
3.2
14
78
6
56
50
0
0
50
1.00
44852--44901
25
2.0
25
84
4
64
36
0
2
62
1.07
45012--45716
235
3.0
229
82
6
778
47
10
14
27
1.78
45727--45759
16
2.1
16
88
5
50
45
3
3
48
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47157--47196
14
2.9
14
92
0
62
37
17
35
10
1.83
47196--48065
235
3.8
230
85
5
1034
46
11
14
27
1.79
48260--48309
26
2.0
25
84
11
66
36
2
4
58
1.29
49536--49575
14
2.9
14
96
0
71
35
17
37
10
1.83
49558--50675
236
4.9
232
85
4
1310
46
11
14
27
1.79
52185--53285
229
4.8
229
85
5
1348
47
11
13
26
1.77
52185--53285
468
2.4
459
85
4
1425
47
11
13
26
1.77
54927--54981
27
2.0
27
92
0
92
58
16
0
25
1.38
57475--57508
15
2.3
15
89
0
50
32
0
0
67
0.91
58754--58794
14
2.9
14
86
13
57
56
0
4
39
1.21
58973--59010
18
2.0
19
85
10
51
44
0
2
52
1.14
59022--59061
21
2.0
21
90
5
64
50
2
0
47
1.14
59022--59069
21
2.3
21
85
3
62
50
2
0
47
1.12

Tables:   1

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