Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold799

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7272
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30


Found at i:2789 original size:2 final size:2

Alignment explanation


    Indices: 2782--2816  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       2772 CTACTTGTTC

                                                    *           
       2782 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       2817 ATGGGTGAAA


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46


Consensus pattern (2 bp):   
AT

Done.